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Castaldi S, Valkov VT, Ricca E, Chiurazzi M, Isticato R. Use of halotolerant Bacillus amyloliquefaciens RHF6 as a bio-based strategy for alleviating salinity stress in Lotus japonicus cv Gifu. Microbiol Res 2023; 268:127274. [PMID: 36527786 DOI: 10.1016/j.micres.2022.127274] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Revised: 11/25/2022] [Accepted: 11/28/2022] [Indexed: 12/12/2022]
Abstract
Halotolerant (HT) bacteria are a group of microorganisms able to thrive in environments with relatively high salt concentrations. HT-microorganisms with plant growth-promoting (PGP) characteristics have been proposed to increase plant tolerance in salty soil. Here, we evaluated the PGP properties at increasing NaCl concentrations of HT-Bacillus strains, previously shown to have beneficial effects under physiological conditions. Most of the isolated showed indole acetic acid and ammonia production and were able to solubilize phosphate and suppress the proliferation of the phytopathogenic fungus Macrophomina phaseolina 2013-1 at high salt concentrations. One of the selected strains, Bacillus amyloliquefaciens RHF6, which retained its beneficial properties up to 400 mM NaCl in vitro, was tested on the legume model plant Lotus japonicus cv Gifu under salt stress. The inoculation with RHF6 significantly improved the survival of plants under high salinity conditions, as reflected in seedling root and shoot growth and total fresh weight (increased by 40%) when compared with non-inoculated plants. The ability of RHF6 to induce a plant antioxidant response, secrete the osmoprotectant proline and reduce ethylene level via the enzymatic ACC deaminase activity indicated this strain as a potentially helpful PGPB for the treatment of degraded soils.
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Affiliation(s)
- Stefany Castaldi
- Department of Biology, University of Naples Federico II, Complesso Universitario Monte S. Angelo, Naples, Italy
| | - Vladimir Totev Valkov
- Institute of Biosciences and Bioresources (IBBR), Italian National Research Council (CNR), Napoli, Italy
| | - Ezio Ricca
- Department of Biology, University of Naples Federico II, Complesso Universitario Monte S. Angelo, Naples, Italy
| | - Maurizio Chiurazzi
- Institute of Biosciences and Bioresources (IBBR), Italian National Research Council (CNR), Napoli, Italy
| | - Rachele Isticato
- Department of Biology, University of Naples Federico II, Complesso Universitario Monte S. Angelo, Naples, Italy; Interuniversity Center for Studies on Bioinspired Agro-Environmental Technology (BAT Center), Portici, NA, Italy; National Biodiversity Future Center (NBFC), Palermo 90133, Italy.
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2
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Chourasia KN, Lal MK, Tiwari RK, Dev D, Kardile HB, Patil VU, Kumar A, Vanishree G, Kumar D, Bhardwaj V, Meena JK, Mangal V, Shelake RM, Kim JY, Pramanik D. Salinity Stress in Potato: Understanding Physiological, Biochemical and Molecular Responses. Life (Basel) 2021; 11:life11060545. [PMID: 34200706 PMCID: PMC8228783 DOI: 10.3390/life11060545] [Citation(s) in RCA: 44] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 06/01/2021] [Accepted: 06/04/2021] [Indexed: 12/20/2022] Open
Abstract
Among abiotic stresses, salinity is a major global threat to agriculture, causing severe damage to crop production and productivity. Potato (Solanum tuberosum) is regarded as a future food crop by FAO to ensure food security, which is severely affected by salinity. The growth of the potato plant is inhibited under salt stress due to osmotic stress-induced ion toxicity. Salinity-mediated osmotic stress leads to physiological changes in the plant, including nutrient imbalance, impairment in detoxifying reactive oxygen species (ROS), membrane damage, and reduced photosynthetic activities. Several physiological and biochemical phenomena, such as the maintenance of plant water status, transpiration, respiration, water use efficiency, hormonal balance, leaf area, germination, and antioxidants production are adversely affected. The ROS under salinity stress leads to the increased plasma membrane permeability and extravasations of substances, which causes water imbalance and plasmolysis. However, potato plants cope with salinity mediated oxidative stress conditions by enhancing both enzymatic and non-enzymatic antioxidant activities. The osmoprotectants, such as proline, polyols (sorbitol, mannitol, xylitol, lactitol, and maltitol), and quaternary ammonium compound (glycine betaine) are synthesized to overcome the adverse effect of salinity. The salinity response and tolerance include complex and multifaceted mechanisms that are controlled by multiple proteins and their interactions. This review aims to redraw the attention of researchers to explore the current physiological, biochemical and molecular responses and subsequently develop potential mitigation strategies against salt stress in potatoes.
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Affiliation(s)
- Kumar Nishant Chourasia
- ICAR-Central Potato Research Institute, Shimla 171001, Himachal Pradesh, India; (M.K.L.); (R.K.T.); (H.B.K.); (V.U.P.); (G.V.); (D.K.); (V.B.); (V.M.)
- Correspondence: (K.N.C.); (D.P.)
| | - Milan Kumar Lal
- ICAR-Central Potato Research Institute, Shimla 171001, Himachal Pradesh, India; (M.K.L.); (R.K.T.); (H.B.K.); (V.U.P.); (G.V.); (D.K.); (V.B.); (V.M.)
| | - Rahul Kumar Tiwari
- ICAR-Central Potato Research Institute, Shimla 171001, Himachal Pradesh, India; (M.K.L.); (R.K.T.); (H.B.K.); (V.U.P.); (G.V.); (D.K.); (V.B.); (V.M.)
| | - Devanshu Dev
- School of Agricultural Sciences, G D Goenka University, Gurugram 122103, Haryana, India;
| | - Hemant Balasaheb Kardile
- ICAR-Central Potato Research Institute, Shimla 171001, Himachal Pradesh, India; (M.K.L.); (R.K.T.); (H.B.K.); (V.U.P.); (G.V.); (D.K.); (V.B.); (V.M.)
| | - Virupaksh U. Patil
- ICAR-Central Potato Research Institute, Shimla 171001, Himachal Pradesh, India; (M.K.L.); (R.K.T.); (H.B.K.); (V.U.P.); (G.V.); (D.K.); (V.B.); (V.M.)
| | - Amarjeet Kumar
- Department of Genetics and Plant Breeding, MTTC&VTC, Central Agriculture University, Imphal 795004, Manipur, India;
| | - Girimalla Vanishree
- ICAR-Central Potato Research Institute, Shimla 171001, Himachal Pradesh, India; (M.K.L.); (R.K.T.); (H.B.K.); (V.U.P.); (G.V.); (D.K.); (V.B.); (V.M.)
| | - Dharmendra Kumar
- ICAR-Central Potato Research Institute, Shimla 171001, Himachal Pradesh, India; (M.K.L.); (R.K.T.); (H.B.K.); (V.U.P.); (G.V.); (D.K.); (V.B.); (V.M.)
| | - Vinay Bhardwaj
- ICAR-Central Potato Research Institute, Shimla 171001, Himachal Pradesh, India; (M.K.L.); (R.K.T.); (H.B.K.); (V.U.P.); (G.V.); (D.K.); (V.B.); (V.M.)
| | - Jitendra Kumar Meena
- ICAR-Central Research Institute for Jute and Allied Fibres, Kolkata 700120, West Bengal, India;
| | - Vikas Mangal
- ICAR-Central Potato Research Institute, Shimla 171001, Himachal Pradesh, India; (M.K.L.); (R.K.T.); (H.B.K.); (V.U.P.); (G.V.); (D.K.); (V.B.); (V.M.)
| | - Rahul Mahadev Shelake
- Division of Applied Life Science (BK21 FOUR Program), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701, Korea; (R.M.S.); (J.-Y.K.)
| | - Jae-Yean Kim
- Division of Applied Life Science (BK21 FOUR Program), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701, Korea; (R.M.S.); (J.-Y.K.)
| | - Dibyajyoti Pramanik
- Division of Applied Life Science (BK21 FOUR Program), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701, Korea; (R.M.S.); (J.-Y.K.)
- Correspondence: (K.N.C.); (D.P.)
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Nadeem MA, Yeken MZ, Shahid MQ, Habyarimana E, Yılmaz H, Alsaleh A, Hatipoğlu R, Çilesiz Y, Khawar KM, Ludidi N, Ercişli S, Aasim M, Karaköy T, Baloch FS. Common bean as a potential crop for future food security: an overview of past, current and future contributions in genomics, transcriptomics, transgenics and proteomics. BIOTECHNOL BIOTEC EQ 2021. [DOI: 10.1080/13102818.2021.1920462] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Affiliation(s)
- Muhammad Azhar Nadeem
- Faculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, Sivas, Turkey
| | - Mehmet Zahit Yeken
- Department of Field Crops, Faculty of Agriculture, Bolu Abant İzzet Baysal University, Bolu, Turkey
| | - Muhammad Qasim Shahid
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, PR China
| | | | - Hilal Yılmaz
- Department of Plant and Animal Production, Izmit Vocational School, Kocaeli University, Kocaeli, Turkey
| | - Ahmad Alsaleh
- Department of Food and Agriculture, Insitutue of Hemp Research, Yozgat Bozok University, 66200, Yozgat, Turkey
| | - Rüştü Hatipoğlu
- Department of Field Crops, Faculty of Agricultural, University of Cukurova, Adana, Turkey
| | - Yeter Çilesiz
- Faculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, Sivas, Turkey
| | - Khalid Mahmood Khawar
- Department of Field Crops, Faculty of Agriculture, Ankara University, Ankara, Turkey
| | - Ndiko Ludidi
- Department of Biotechnology and DSI-NRF Center of Excellence in Food Security, University of the Western Cape, Bellville, South Africa
| | - Sezai Ercişli
- Department of Horticulture, Faculty of Agriculture, Ataturk University, Erzurum, Turkey
| | - Muhammad Aasim
- Faculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, Sivas, Turkey
| | - Tolga Karaköy
- Faculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, Sivas, Turkey
| | - Faheem Shehzad Baloch
- Faculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, Sivas, Turkey
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Shoaib A, Meraj S, Nafisa, Khan KA, Javaid MA. Influence of salinity and Fusarium oxysporum as the stress factors on morpho-physiological and yield attributes in onion. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2018; 24:1093-1101. [PMID: 30425426 PMCID: PMC6214432 DOI: 10.1007/s12298-018-0570-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Revised: 06/05/2018] [Accepted: 06/10/2018] [Indexed: 06/09/2023]
Abstract
Occurrence of salt stress with the soil borne fungus Fusarium oxysporum f. sp. cepa (FOC) are potential threat to the crop yield. This investigation reports effect of the concurrent stresses (salinity and FOC) on morpho-physiological and yield attributes in onion. In vitro growth tests revealed proliferation of FOC biomass at different levels of salinity (2-8 dS m-1). A greenhouse pot experiment with the proposed levels of salinity (2.5, 3.5 and 4.5 dS m-1) in combination with FOC inoculation showed more drastic effect of combined stress on disease severity, plant growth and bulb as compared to the individual stress. In general, osmotic potential, total chlorophyll content, membrane stability index and total protein content of the leaf were decreased, while total phenolics were increased due to the given stress/s. Total sugar content decreased due to effect of the individual stress of FOC, while it increased under the individual stress of salinity and in combination with FOC. FOC infection did not change activity of polyphenol oxidase (PPO), while it improved peroxidase (POX) and phenylalanine ammonia lyase (PAL) and decreased catalase (CAT) activity. Activities of POX and PPO increased, however PAL and CAT declined under individual as well as simultaneous stress of salinity and FOC. The research work concluded that FOC will be a more severe disease threat for onion cultivation in saline soils.
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Affiliation(s)
- Amna Shoaib
- Institute of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
| | - Sidra Meraj
- Institute of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
| | - Nafisa
- Institute of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
| | - Kashif Ali Khan
- Institute of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
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5
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Pinto MV, H. S. P, M. S. R, R. T, Naik VG. Association mapping of quantitative resistance to charcoal root rot in mulberry germplasm. PLoS One 2018; 13:e0200099. [PMID: 29979732 PMCID: PMC6034859 DOI: 10.1371/journal.pone.0200099] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2018] [Accepted: 06/19/2018] [Indexed: 02/04/2023] Open
Abstract
Outbreaks of root rot disease in the productive South Indian sericulture belt have threatened the sustainability of the industry. Macrophomina phaseolina (Tassi) Goid. causing charcoal rot is the predominant pathogen to which all productive mulberry cultivars are susceptible. The present study was undertaken to identify molecular markers associated with charcoal rot resistance in mulberry. A mapping panel comprising 214 diverse entries from the Indian germplasm collection was assessed for charcoal rot resistance by artificial inoculation. Resistance to the pathogen was observed in 20 entries, and 51 were found to be moderately resistant. A total of 773 alleles generated across 105 SSR loci and 20,384 AFLP markers generated using 32 EcoRI-NN and MseI-CNN primer combinations were used in genetic analysis. The panel was weakly structured with two subpopulations. However, most entries were found to be admixtures. Survival of cuttings and number of roots per sapling were associated with root rot resistance. Association mapping was performed using different linear mixed models. Five AFLP markers explaining 9.6-12.7% of the total phenotypic variance were found to be significantly (p < 0.05) associated with root rot resistance. Significant associations were also detected in four AFLP markers for survival of cuttings, and these markers explained 10.7-14.2% of the total phenotypic variance. These markers should be validated using mapping populations derived from contrasting biparental combinations by linkage analysis for use in marker-assisted gene pyramiding for durable resistance. The resistant genotypes identified in this study will substantially contribute to genetic improvement of mulberry for charcoal rot resistance and can be integrated into conventional breeding programmes.
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Affiliation(s)
- Marian Vincent Pinto
- Molecular Biology Laboratory– 1, Central Sericultural Research and Training Institute, Mysuru, Karnataka, India
| | - Poornima H. S.
- Molecular Biology Laboratory– 1, Central Sericultural Research and Training Institute, Mysuru, Karnataka, India
| | - Rukmangada M. S.
- Molecular Biology Laboratory– 1, Central Sericultural Research and Training Institute, Mysuru, Karnataka, India
| | - Triveni R.
- Molecular Biology Laboratory– 1, Central Sericultural Research and Training Institute, Mysuru, Karnataka, India
| | - V. Girish Naik
- Molecular Biology Laboratory– 1, Central Sericultural Research and Training Institute, Mysuru, Karnataka, India
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Garcia-Molina A, Altmann M, Alkofer A, Epple PM, Dangl JL, Falter-Braun P. LSU network hubs integrate abiotic and biotic stress responses via interaction with the superoxide dismutase FSD2. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:1185-1197. [PMID: 28207043 PMCID: PMC5441861 DOI: 10.1093/jxb/erw498] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
In natural environments, plants often experience different stresses simultaneously, and adverse abiotic conditions can weaken the plant immune system. Interactome mapping revealed that the LOW SULPHUR UPREGULATED (LSU) proteins are hubs in an Arabidopsis protein interaction network that are targeted by virulence effectors from evolutionarily diverse pathogens. Here we show that LSU proteins are up-regulated in several abiotic and biotic stress conditions, such as nutrient depletion or salt stress, by both transcriptional and post-translational mechanisms. Interference with LSU expression prevents chloroplastic reactive oxygen species (ROS) production and proper stomatal closure during sulphur stress. We demonstrate that LSU1 interacts with the chloroplastic superoxide dismutase FSD2 and stimulates its enzymatic activity in vivo and in vitro. Pseudomonas syringae virulence effectors interfere with this interaction and preclude re-localization of LSU1 to chloroplasts. We demonstrate that reduced LSU levels cause a moderately enhanced disease susceptibility in plants exposed to abiotic stresses such as nutrient deficiency, high salinity, or heavy metal toxicity, whereas LSU1 overexpression confers significant disease resistance in several of these conditions. Our data suggest that the network hub LSU1 plays an important role in co-ordinating plant immune responses across a spectrum of abiotic stress conditions.
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Affiliation(s)
- Antoni Garcia-Molina
- Technische Universität München (TUM), School for Life Sciences Weihenstephan (WZW), Plant Systems Biology, Emil-Ramann-Straße, 4, D-85354 Freising, Germany
| | - Melina Altmann
- Technische Universität München (TUM), School for Life Sciences Weihenstephan (WZW), Plant Systems Biology, Emil-Ramann-Straße, 4, D-85354 Freising, Germany
| | - Angela Alkofer
- Technische Universität München (TUM), School for Life Sciences Weihenstephan (WZW), Plant Systems Biology, Emil-Ramann-Straße, 4, D-85354 Freising, Germany
| | - Petra M Epple
- Howard Hughes Medical Institute and Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
| | - Jeffery L Dangl
- BASF Plant Science LP, Research Triangle Park, NC 27709, USA
| | - Pascal Falter-Braun
- Institute of Network Biology (INET), Helmholtz Zentrum München (HMGU), German Research Center for Environmental Health, 85764 Neuherberg, Germany
- Department of Microbe-Host Interactions, Ludwig-Maximilians-Universität München (LMU Munich), Planegg-Martinsried, Germany
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7
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Marcenaro D, Valkonen JPT. Seedborne Pathogenic Fungi in Common Bean (Phaseolus vulgaris cv. INTA Rojo) in Nicaragua. PLoS One 2016; 11:e0168662. [PMID: 27997595 PMCID: PMC5173241 DOI: 10.1371/journal.pone.0168662] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2016] [Accepted: 12/05/2016] [Indexed: 12/03/2022] Open
Abstract
Common bean (Phaseolus vulgaris L.) is an important legume with high nutritional value. In Nicaragua, certified healthy seeds of local bean varieties are not available, and seedborne fungi have gained little attention. Here, were surveyed seedborne pathogenic fungi in an important local bean cultivar, 'INTA Rojo'. Beans grown in the four main production areas in Nicaragua (Boaco, Carazo, Estelí, Matagalpa) for future use as seed stock were sampled from four seed storehouses and six seed lots. A total of 133 fungal strains were isolated from surface-sterilized beans and inoculated to healthy lima beans (Phaseolus lunatus) under controlled conditions. Eighty-seven isolates caused symptoms of varying severity in the seedlings, including discoloration, necrotic lesions, cankers, rot, and lethal necrosis. Pathogenic isolates were divided into eight phenotypically distinguishable groups based on morphology and growth characteristics on artificial growth medium, and further identified by analysis of the internal transcribed spacer sequences (ITS1 and ITS2) of the ribosomal RNA genes. The pathogenic isolates belonged to eight genera. Fusarium spp. (F. chlamydosporum, F. equiseti, F. incarnatum), Lasiodiplodia theobromae, Macrophomina phaseolina, and Penicillium citrinum were the most damaging and common fungi found in the seed lots. Furthermore, Corynespora cassiicola, Colletotrichum capsisi, Colletotrichum gloeosporioides, Aspergillus flavus, and Diaporthe sp. (Phomopsis) were seedborne in cultivar 'INTA Rojo' and found to be pathogenic to bean seedlings. This study reveals, for the first time, many seedborne pathogenic fungi in beans in Nicaragua; furthermore, prior to this study, little information was available concerning F. equiseti, F. incarnatum, L. theobromae, C. cassiicola, and Diaporthe spp. as seedborne pathogens of common bean. Our results lay the basis for developing diagnostic tools for seed health inspection and for further study of the epidemiology, ecology, and control of the pathogenic fungi of common beans in the field.
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Affiliation(s)
- Delfia Marcenaro
- Nicaraguan Institute of Agricultural Technology (CNIAB-INTA), Managua, Nicaragua
- Department of Agricultural Sciences, University of Helsinki, (Latokartanonkaari 7), Helsinki, Finland
| | - Jari P. T. Valkonen
- Department of Agricultural Sciences, University of Helsinki, (Latokartanonkaari 7), Helsinki, Finland
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Martínez-Villarreal R, Garza-Romero TS, Moreno-Medina VR, Hernández-Delgado S, Mayek-Pérez N. [Biochemical basis of tolerance to osmotic stress in phytopathogenic fungus: The case of Macrophomina phaseolina (Tassi) Goid.]. Rev Argent Microbiol 2016; 48:347-357. [PMID: 28341024 DOI: 10.1016/j.ram.2016.05.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2016] [Revised: 04/09/2016] [Accepted: 05/10/2016] [Indexed: 01/21/2023] Open
Abstract
Fungus Macrophomina phaseolina (Tassi) Goid. is the causative agent of charcoal rot disease which causes significant yield losses in major crops such as maize, sorghum, soybean and common beans in Mexico. This fungus is a facultative parasite which shows broad ability to adapt itself to stressed environments where water deficits and/or high temperature stresses commonly occur. These environmental conditions are common for most cultivable lands throughout Mexico. Here we describe some basic facts related to the etiology and epidemiology of the fungus as well as to the importance of responses to stressed environments, particularly to water deficits, based on morphology and growth traits, as well as on physiology, biochemistry and pathogenicity of fungus M. phaseolina. To conclude, we show some perspectives related to future research into the genus, which emphasize the increasing need to improve the knowledge based on the application of both traditional and biotechnological tools in order to elucidate the mechanisms of resistance to environmental stress which can be extrapolated to other useful organisms to man.
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Affiliation(s)
| | - Tamar S Garza-Romero
- Instituto Politécnico Nacional, Centro de Biotecnología Genómica, Reynosa, Tamaulipas, México
| | - Víctor R Moreno-Medina
- Instituto Politécnico Nacional, Centro de Biotecnología Genómica, Reynosa, Tamaulipas, México
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Patil S, Paradeshi J, Chaudhari B. Suppression of charcoal rot in soybean by moderately halotolerant Pseudomonas aeruginosa GS-33 under saline conditions. J Basic Microbiol 2016; 56:889-99. [PMID: 27213894 DOI: 10.1002/jobm.201600008] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2016] [Accepted: 03/18/2016] [Indexed: 01/13/2023]
Abstract
Charcoal rot severely limits the soybean crop yield under saline conditions. The present studies focus on biocontrol and plant growth promoting potential of phenazine producing moderately halotolerant Pseudomonas aeruginosa (GS-33) in soybean under saline soil conditions. A marine isolate; GS-33 was identified as P. aeruginosa based on polyphasic characterization. This strain showed potent in vitro biocontrol activity against charcoal rot causing fungus Macrophomina phaseolina. It was capable of producing phenazine-1-carboxylic acid even at elevated salt concentrations. Moreover, GS-33 possessed other biocontrol traits like production of siderophores, HCN and protease under saline conditions. Multiple traits for plant growth promotion such as synthesis of IAA, NH3 , and solubilization of phosphate were also exhibited by GS-33. Plant growth promoting and biocontrol control potentials of GS-33 were evaluated by pot assay under saline soil conditions. Higher biomass and chlorophyll content were observed in GS-33 treated seedlings. A greater reduction in charcoal rot caused by fungal pathogens under both normal and saline soil conditions in GS-33 treated seedlings was observed. In a nut shell, phenazine producing halotolerant strain GS-33 could mitigate saline soil conditions (abiotic stress) and infestation of M. phaseolina (biotic stress) in soybean.
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Affiliation(s)
- Sandeep Patil
- School of Life Sciences, North Maharashtra University, Jalgaon, India
| | | | - Bhushan Chaudhari
- School of Life Sciences, North Maharashtra University, Jalgaon, India
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Kissoudis C, van de Wiel C, Visser RGF, van der Linden G. Enhancing crop resilience to combined abiotic and biotic stress through the dissection of physiological and molecular crosstalk. FRONTIERS IN PLANT SCIENCE 2014; 5:207. [PMID: 24904607 PMCID: PMC4032886 DOI: 10.3389/fpls.2014.00207] [Citation(s) in RCA: 152] [Impact Index Per Article: 15.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2014] [Accepted: 04/28/2014] [Indexed: 05/18/2023]
Abstract
Plants growing in their natural habitats are often challenged simultaneously by multiple stress factors, both abiotic and biotic. Research has so far been limited to responses to individual stresses, and understanding of adaptation to combinatorial stress is limited, but indicative of non-additive interactions. Omics data analysis and functional characterization of individual genes has revealed a convergence of signaling pathways for abiotic and biotic stress adaptation. Taking into account that most data originate from imposition of individual stress factors, this review summarizes these findings in a physiological context, following the pathogenesis timeline and highlighting potential differential interactions occurring between abiotic and biotic stress signaling across the different cellular compartments and at the whole plant level. Potential effects of abiotic stress on resistance components such as extracellular receptor proteins, R-genes and systemic acquired resistance will be elaborated, as well as crosstalk at the levels of hormone, reactive oxygen species, and redox signaling. Breeding targets and strategies are proposed focusing on either manipulation and deployment of individual common regulators such as transcription factors or pyramiding of non- (negatively) interacting components such as R-genes with abiotic stress resistance genes. We propose that dissection of broad spectrum stress tolerance conferred by priming chemicals may provide an insight on stress cross regulation and additional candidate genes for improving crop performance under combined stress. Validation of the proposed strategies in lab and field experiments is a first step toward the goal of achieving tolerance to combinatorial stress in crops.
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Islam MS, Haque MS, Islam MM, Emdad EM, Halim A, Hossen QMM, Hossain MZ, Ahmed B, Rahim S, Rahman MS, Alam MM, Hou S, Wan X, Saito JA, Alam M. Tools to kill: genome of one of the most destructive plant pathogenic fungi Macrophomina phaseolina. BMC Genomics 2012; 13:493. [PMID: 22992219 PMCID: PMC3477038 DOI: 10.1186/1471-2164-13-493] [Citation(s) in RCA: 84] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2012] [Accepted: 09/13/2012] [Indexed: 02/08/2023] Open
Abstract
BACKGROUND Macrophomina phaseolina is one of the most destructive necrotrophic fungal pathogens that infect more than 500 plant species throughout the world. It can grow rapidly in infected plants and subsequently produces a large amount of sclerotia that plugs the vessels, resulting in wilting of the plant. RESULTS We sequenced and assembled ~49 Mb into 15 super-scaffolds covering 92.83% of the M. phaseolina genome. We predict 14,249 open reading frames (ORFs) of which 9,934 are validated by the transcriptome. This phytopathogen has an abundance of secreted oxidases, peroxidases, and hydrolytic enzymes for degrading cell wall polysaccharides and lignocelluloses to penetrate into the host tissue. To overcome the host plant defense response, M. phaseolina encodes a significant number of P450s, MFS type membrane transporters, glycosidases, transposases, and secondary metabolites in comparison to all sequenced ascomycete species. A strikingly distinct set of carbohydrate esterases (CE) are present in M. phaseolina, with the CE9 and CE10 families remarkably higher than any other fungi. The phenotypic microarray data indicates that M. phaseolina can adapt to a wide range of osmotic and pH environments. As a broad host range pathogen, M. phaseolina possesses a large number of pathogen-host interaction genes including those for adhesion, signal transduction, cell wall breakdown, purine biosynthesis, and potent mycotoxin patulin. CONCLUSIONS The M. phaseolina genome provides a framework of the infection process at the cytological and molecular level which uses a diverse arsenal of enzymatic and toxin tools to destroy the host plants. Further understanding of the M. phaseolina genome-based plant-pathogen interactions will be instrumental in designing rational strategies for disease control, essential to ensuring global agricultural crop production and security.
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Affiliation(s)
- Md Shahidul Islam
- Basic and Applied Research on Jute Project, Bangladesh Jute Research Institute, Manik Mia Avenue, Dhaka 1207, Bangladesh
| | - Md Samiul Haque
- Basic and Applied Research on Jute Project, Bangladesh Jute Research Institute, Manik Mia Avenue, Dhaka 1207, Bangladesh
| | - Mohammad Moinul Islam
- Basic and Applied Research on Jute Project, Bangladesh Jute Research Institute, Manik Mia Avenue, Dhaka 1207, Bangladesh
| | - Emdadul Mannan Emdad
- Basic and Applied Research on Jute Project, Bangladesh Jute Research Institute, Manik Mia Avenue, Dhaka 1207, Bangladesh
| | - Abdul Halim
- Basic and Applied Research on Jute Project, Bangladesh Jute Research Institute, Manik Mia Avenue, Dhaka 1207, Bangladesh
| | - Quazi Md Mosaddeque Hossen
- Basic and Applied Research on Jute Project, Bangladesh Jute Research Institute, Manik Mia Avenue, Dhaka 1207, Bangladesh
| | - Md Zakir Hossain
- Basic and Applied Research on Jute Project, Bangladesh Jute Research Institute, Manik Mia Avenue, Dhaka 1207, Bangladesh
| | - Borhan Ahmed
- Basic and Applied Research on Jute Project, Bangladesh Jute Research Institute, Manik Mia Avenue, Dhaka 1207, Bangladesh
| | - Sifatur Rahim
- Basic and Applied Research on Jute Project, Bangladesh Jute Research Institute, Manik Mia Avenue, Dhaka 1207, Bangladesh
| | - Md Sharifur Rahman
- Basic and Applied Research on Jute Project, Bangladesh Jute Research Institute, Manik Mia Avenue, Dhaka 1207, Bangladesh
| | - Md Monjurul Alam
- Basic and Applied Research on Jute Project, Bangladesh Jute Research Institute, Manik Mia Avenue, Dhaka 1207, Bangladesh
| | - Shaobin Hou
- Advanced Studies in Genomics, Proteomics and Bioinformatics, University of Hawaii, 2565 McCarthy Mall, Keller 319, Honolulu, Hawaii 96822, USA
| | - Xuehua Wan
- Advanced Studies in Genomics, Proteomics and Bioinformatics, University of Hawaii, 2565 McCarthy Mall, Keller 319, Honolulu, Hawaii 96822, USA
| | - Jennifer A Saito
- Centre for Chemical Biology, Universiti Sains Malaysia, Penang, 11800, Malaysia
| | - Maqsudul Alam
- Basic and Applied Research on Jute Project, Bangladesh Jute Research Institute, Manik Mia Avenue, Dhaka 1207, Bangladesh
- Advanced Studies in Genomics, Proteomics and Bioinformatics, University of Hawaii, 2565 McCarthy Mall, Keller 319, Honolulu, Hawaii 96822, USA
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Cavalieri A, Merchant A, van Volkenburgh E. Why not beans? FUNCTIONAL PLANT BIOLOGY : FPB 2011; 38:iii-vi. [PMID: 32480950 DOI: 10.1071/fpv38n12_fo] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Changes in climate and urbanisation rapidly affecting human livelihood are particularly threatening to developing nations in tropical regions. Food production crises have focused the global development agenda on agricultural research, a proven approach for increasing crop yield. A few crops benefit from private investment, but improvement of most crops will rely on limited public funding that must be deployed strategically, pushing forward both proven approaches and new ideas. Why not invest in beans? More than 300 million people rely on this crop, considered to be the most important grain legume for human consumption. Yet the yield of beans, especially in poor regions or marginal soils, is reduced by abiotic stresses such as phosphorus deficiency, aluminum toxicity and especially drought. Is it possible to assemble resources, including genetic diversity in beans, breeding expertise, genomic information and tools, and physiological insight to generate rapid progress in developing new lines of beans more tolerant to abiotic stress? A workshop to address this question was held in November 2010 at the International Center for Tropical Agriculture (CIAT) in Colombia. The resulting 'call to action' is presented in this issue which also includes research papers focused on tolerance of beans to stress.
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Affiliation(s)
- Anthony Cavalieri
- International Centre for Tropical Agriculture (CIAT), Palmira 6713, Colombia
| | - Andrew Merchant
- Faculty of Agriculture, Food and Natural Resources, The University of Sydney, Sydney, NSW 2006, Australia
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