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Gagnon L, Moreau C, Laprise C, Vézina H, Girard SL. Deciphering the genetic structure of the Quebec founder population using genealogies. Eur J Hum Genet 2024; 32:91-97. [PMID: 37016017 PMCID: PMC10772069 DOI: 10.1038/s41431-023-01356-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Revised: 03/07/2023] [Accepted: 03/22/2023] [Indexed: 04/06/2023] Open
Abstract
Using genealogy to study the demographic history of a population makes it possible to overcome the models and assumptions often used in population genetics. The Quebec founder population is one of the few populations in the world having access to the complete genealogy of the last 400 years. The goal of this study is to follow the evolution of the Quebec population structure over time from the beginning of European colonization until the present day. To do so, we calculated the kinship coefficients of all ancestors' pairs in the ascending genealogy of 665 subjects from eight regional and ethnocultural groups per 25-year period. We show that the Quebec population structure appeared progressively in the St. Lawrence valley as early as 1750 with the distinction of the Saguenay and Gaspesian groups. At that time, the ancestors of two groups, the Sagueneans and the Acadians from the Gaspé Peninsula, experienced a marked increase in kinship and inbreeding levels which have shaped the structure and led to the contemporary population structure. Interestingly, this structure arose before the colonization of the Saguenay region and at the very beginning of the Gaspé Peninsula settlement. The resulting regional founder effects in these groups led to differences in the present-day identity-by-descent sharing, the Gaspé and North Shore groups sharing more large segments and the Sagueneans more short segments. This is also reflected by the distribution of the number of most recent common ancestors at different generations and their genetic contribution to the studied subjects.
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Affiliation(s)
- Laurence Gagnon
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, Saguenay, Québec, G7H 2B1, Canada
- Centre Intersectoriel en Santé Durable (CISD), Université du Québec à Chicoutimi, Saguenay, Québec, G7H 2B1, Canada
| | - Claudia Moreau
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, Saguenay, Québec, G7H 2B1, Canada
- Centre Intersectoriel en Santé Durable (CISD), Université du Québec à Chicoutimi, Saguenay, Québec, G7H 2B1, Canada
| | - Catherine Laprise
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, Saguenay, Québec, G7H 2B1, Canada
- Centre Intersectoriel en Santé Durable (CISD), Université du Québec à Chicoutimi, Saguenay, Québec, G7H 2B1, Canada
- Centre Intégré Universitaire en Santé et Services Sociaux du Saguenay-Lac-Saint-Jean, Saguenay, Québec, G7H 7K9, Canada
| | - Hélène Vézina
- Centre Intersectoriel en Santé Durable (CISD), Université du Québec à Chicoutimi, Saguenay, Québec, G7H 2B1, Canada
- Département des Sciences Humaines et Sociales, Université du Québec à Chicoutimi, Saguenay, Québec, G7H 2B1, Canada
- Projet BALSAC, Université du Québec à Chicoutimi, Saguenay, Québec, G7H 2B1, Canada
| | - Simon L Girard
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, Saguenay, Québec, G7H 2B1, Canada.
- Centre Intersectoriel en Santé Durable (CISD), Université du Québec à Chicoutimi, Saguenay, Québec, G7H 2B1, Canada.
- Centre de Recherche CERVO, Université Laval, Québec, Québec, G1V 0A6, Canada.
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2
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McCormack JL, Arbuckle K, Fullard K, Amos W, Nichols HJ. Lack of intergenerational reproductive conflict, rather than lack of inclusive fitness benefits, explains absence of post-reproductive lifespan in long-finned pilot whales. Behav Ecol 2023; 34:950-959. [PMID: 37969551 PMCID: PMC10636734 DOI: 10.1093/beheco/arad062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Revised: 06/28/2023] [Accepted: 07/17/2023] [Indexed: 11/17/2023] Open
Abstract
Life-history theory suggests that individuals should reproduce until death, yet females of a small number of mammals live for a significant period after ceasing reproduction, a phenomenon known as post-reproductive lifespan. It is thought that the evolution of this trait is facilitated by increasing local relatedness throughout a female's lifetime. This allows older females to gain inclusive fitness through helping their offspring (known as a mother effect) and/or grandoffspring (known as a grandmother effect), rather than gaining direct fitness through reproducing. However, older females may only benefit from stopping reproducing when their direct offspring compete with those of their daughters. Here, we investigate whether a lack of post-reproductive lifespan in long-finned pilot whales (Globicephala melas) results from minimal benefits incurred from the presence of older females, or from a lack of costs resulting from mother-daughter co-reproduction. Using microsatellite data, we conducted parentage analysis on individuals from 25 pods and find that younger females were more likely to have offspring if their mother was present in their pod, indicating that mothers may assist inexperienced daughters to reproduce. However, we found no evidence of reproductive conflict between co-reproducing mothers and daughters, indicating that females may be able to reproduce into old age while simultaneously aiding their daughters in reproduction. This highlights the importance of reproductive conflict in the evolution of a post-reproductive lifespan and demonstrates that mother and grandmother effects alone do not result in the evolution of a post-reproductive lifespan.
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Affiliation(s)
- Jack L McCormack
- Department of Biosciences, Swansea University, Swansea SA2 8PP, Swansea, UK
| | - Kevin Arbuckle
- Department of Biosciences, Swansea University, Swansea SA2 8PP, Swansea, UK
| | - Karen Fullard
- Department of Radiology, Royal Prince Alfred Hospital, Missenden Road, Sydney, New South Wales 2050, Australia
| | - William Amos
- Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, Cambridgeshire, UK
| | - Hazel J Nichols
- Department of Biosciences, Swansea University, Swansea SA2 8PP, Swansea, UK
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3
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Reynolds TA. Response to Commentaries: Variation in Women's Intrasexual Sociality by Life History Strategy, Patrilocal Legacy, and Polygyny. ARCHIVES OF SEXUAL BEHAVIOR 2022; 51:3299-3310. [PMID: 35854162 DOI: 10.1007/s10508-022-02378-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2022] [Revised: 06/28/2022] [Accepted: 06/29/2022] [Indexed: 06/15/2023]
Affiliation(s)
- Tania A Reynolds
- Department of Psychology, University of New Mexico, Logan Hall, MSC03-2220, Albuquerque, NM, 87131-0001, USA.
- The Kinsey Institute, Indiana University, Bloomington, USA.
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Labuda D, Harding T, Milot E, Vézina H. The effective family size of immigrant founders predicts their long-term demographic outcome: From Québec settlers to their 20th-century descendants. PLoS One 2022; 17:e0266079. [PMID: 35507549 PMCID: PMC9067642 DOI: 10.1371/journal.pone.0266079] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Accepted: 03/14/2022] [Indexed: 11/19/2022] Open
Abstract
Population history reconstruction, using extant genetic diversity data, routinely relies on simple demographic models to project the past through ascending genealogical-tree branches. Because genealogy and genetics are intimately related, we traced descending genealogies of the Québec founders to pursue their fate and to assess their contribution to the present-day population. Focusing on the female and male founder lines, we observed important sex-biased immigration in the early colony years and documented a remarkable impact of these early immigrants on the genetic make-up of 20th-century Québec. We estimated the immigrants’ survival ratio as a proportion of lineages found in the 1931–60 Québec to their number introduced within the immigration period. We assessed the effective family size, EFS, of all immigrant parents and their Québec-born descendants. The survival ratio of the earliest immigrants was the highest and declined over centuries in association with the immigrants’ EFS. Parents with high EFS left plentiful married descendants, putting EFS as the most important variable determining the parental demographic success throughout time for generations ahead. EFS of immigrant founders appears to predict their long-term demographic and, consequently, their genetic outcome. Genealogically inferred immigrants’ "autosomal" genetic contribution to 1931–60 Québec from consecutive immigration periods follow the same yearly pattern as the corresponding maternal and paternal lines. Québec genealogical data offer much broader information on the ancestral diversity distribution than genetic scrutiny of a limited population sample. Genealogically inferred population history could assist studies of evolutionary factors shaping population structure and provide tools to target specific health interventions.
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Affiliation(s)
- Damian Labuda
- Centre de Recherche, CHU Sainte-Justine, Université de Montréal, Montreal, Québec, Canada
- Département de Pédiatrie, Université de Montréal, Montreal, Québec, Canada
- * E-mail:
| | - Tommy Harding
- Centre de Recherche, CHU Sainte-Justine, Université de Montréal, Montreal, Québec, Canada
- Département de chimie, biochimie et physique, Université du Québec à Trois-Rivières, Trois-Rivières, Québec, Canada
| | - Emmanuel Milot
- Département de chimie, biochimie et physique, Université du Québec à Trois-Rivières, Trois-Rivières, Québec, Canada
| | - Hélène Vézina
- Projet BALSAC, Université du Québec à Chicoutimi, Chicoutimi, Québec, Canada
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5
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OUP accepted manuscript. Hum Reprod Update 2022; 28:457-479. [DOI: 10.1093/humupd/dmac014] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Revised: 02/17/2022] [Indexed: 11/12/2022] Open
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Kun Á. Is there still evolution in the human population? Biol Futur 2022; 73:359-374. [PMID: 36592324 PMCID: PMC9806833 DOI: 10.1007/s42977-022-00146-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Accepted: 12/08/2022] [Indexed: 01/03/2023]
Abstract
It is often claimed that humanity has stopped evolving because modern medicine erased all selection on survival. Even if that would be true, and it is not, there would be other mechanisms of evolution which could still led to changes in allelic frequencies. Here I show, by applying basic evolutionary genetics knowledge, that we expect humanity to evolve. The results from genome sequencing projects have repeatedly affirmed that there are still recent signs of selection in our genomes. I give some examples of such adaptation. Then I briefly discuss what our evolutionary future has in store for us.
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Affiliation(s)
- Ádám Kun
- grid.5591.80000 0001 2294 6276Department of Plant Systematics, Ecology and Theoretical Biology, Eötvös University, Budapest, Hungary ,Parmenides Center for the Conceptual Foundations of Science, Pöcking, Germany ,grid.481817.3Institute of Evolution, Centre for Ecological Research, Budapest, Hungary ,grid.5018.c0000 0001 2149 4407MTA-ELTE Theoretical Biology and Evolutionary Ecology Research Group, Budapest, Hungary ,grid.5018.c0000 0001 2149 4407MTA-ELTE-MTM Ecology Research Group, Budapest, Hungary
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Zhang L, Liu J, Lummaa V. Intention to have a second child, family support and actual fertility behavior in current China: An evolutionary perspective. Am J Hum Biol 2021; 34:e23669. [PMID: 34398990 DOI: 10.1002/ajhb.23669] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Revised: 07/11/2021] [Accepted: 08/04/2021] [Indexed: 11/10/2022] Open
Abstract
OBJECTIVES This study provides an evolutionary perspective to a classic topic in demography, that is, the discrepancy between reproductive intention and subsequent behavior, in the context of China's two-child policy. METHODS We conduct an event history analysis of longitudinal data from the 2015 and 2018 waves of the Xi'an Fertility Survey (sample size = 321 followed one-child mothers) to test the hypotheses of how within-family support/conflict affects women's fertility behavior. RESULTS Only 50% of positive intentions (i.e., intending to have a second child) led to another (live) birth within the 3-year interval; meanwhile, 15% of uncertain intentions and 5% of negative intentions resulted in a birth. Husband's and the firstborn's emotional support raised the hazard of second childbirth along maternal life course, which cannot be fully mediated by mother's fertility intention and thus, contributed to an intention-behavior gap. Husband's sibship size had dual effects on female childbearing behavior: A positive indirect effect mediated by fertility intention, but a negative direct effect presumably due to sibling competition for intergenerational support. Finally, after controlling for fertility intention, having a firstborn son was still associated significantly with a lower second-childbirth hazard, presumably due to son preference as well as concern over parental investment. CONCLUSIONS Our study identifies a discrepancy between maternal fertility intention and realized childbearing, which was partly explained by (lack of) support from other (multiple) stakeholders in family reproduction.
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Affiliation(s)
- Lianchao Zhang
- The Institute for Population & Development Studies, The School of Public Policy & Administration, Xi'an Jiaotong University, Xi'an, China
| | - Jianghua Liu
- The Institute for Population & Development Studies, The School of Public Policy & Administration, Xi'an Jiaotong University, Xi'an, China
| | - Virpi Lummaa
- Department of Biology, University of Turku, Turku, Finland
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8
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Historical Context Changes Pathways of Parental Influence on Reproduction: An Empirical Test from 20th-Century Sweden. SOCIAL SCIENCES 2021. [DOI: 10.3390/socsci10070260] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Several studies have found that parental absences in childhood are associated with individuals’ reproductive strategies later in life. However, these associations vary across populations and the reasons for this heterogeneity remain debated. In this paper, we examine the diversity of parental associations in three ways. First, we test whether different kinds of parental availability in childhood and adolescence are associated with women’s and men’s ages at first birth using the intergenerational and longitudinal Uppsala Birth Cohort Study (UBCoS) dataset from Sweden. This cultural context provides a strong test of the hypothesis that parents influence life history strategies given that robust social safety nets may buffer parental absences. Second, we examine whether investments in education help explain why early parental presence is associated with delayed ages at first birth in many post-industrial societies, given that parents often support educational achievement. Third, we compare parental associations with reproductive timing across two adjacent generations in Sweden. This historical contrast allows us to control for many sources of heterogeneity while examining whether changing educational access and norms across the 20th-century change the magnitude and pathways of parental influence. We find that parental absences tend to be associated with earlier first births, and more reliably so for women. Many of these associations are partially mediated by university attendance. However, we also find important differences across cohorts. For example, the associations with paternal death become similar for sons and daughters in the more recent cohort. One possible explanation for this finding is that fathers start influencing sons and daughters more similarly. Our results illustrate that historical changes within a population can quickly shift how family affects life history.
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9
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Dutta A, Hartmann FE, Francisco CS, McDonald BA, Croll D. Mapping the adaptive landscape of a major agricultural pathogen reveals evolutionary constraints across heterogeneous environments. THE ISME JOURNAL 2021; 15:1402-1419. [PMID: 33452474 PMCID: PMC8115182 DOI: 10.1038/s41396-020-00859-w] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Revised: 11/17/2020] [Accepted: 11/24/2020] [Indexed: 02/06/2023]
Abstract
The adaptive potential of pathogens in novel or heterogeneous environments underpins the risk of disease epidemics. Antagonistic pleiotropy or differential resource allocation among life-history traits can constrain pathogen adaptation. However, we lack understanding of how the genetic architecture of individual traits can generate trade-offs. Here, we report a large-scale study based on 145 global strains of the fungal wheat pathogen Zymoseptoria tritici from four continents. We measured 50 life-history traits, including virulence and reproduction on 12 different wheat hosts and growth responses to several abiotic stressors. To elucidate the genetic basis of adaptation, we used genome-wide association mapping coupled with genetic correlation analyses. We show that most traits are governed by polygenic architectures and are highly heritable suggesting that adaptation proceeds mainly through allele frequency shifts at many loci. We identified negative genetic correlations among traits related to host colonization and survival in stressful environments. Such genetic constraints indicate that pleiotropic effects could limit the pathogen's ability to cause host damage. In contrast, adaptation to abiotic stress factors was likely facilitated by synergistic pleiotropy. Our study illustrates how comprehensive mapping of life-history trait architectures across diverse environments allows to predict evolutionary trajectories of pathogens confronted with environmental perturbations.
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Affiliation(s)
- Anik Dutta
- grid.5801.c0000 0001 2156 2780Plant Pathology, Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
| | - Fanny E. Hartmann
- grid.5801.c0000 0001 2156 2780Plant Pathology, Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland ,grid.417885.70000 0001 2185 8223Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, 91400 Orsay, France
| | - Carolina Sardinha Francisco
- grid.5801.c0000 0001 2156 2780Plant Pathology, Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland ,Present Address: Environmental Genomics Group, Botanical Institute, CAU Kiel, Germany
| | - Bruce A. McDonald
- grid.5801.c0000 0001 2156 2780Plant Pathology, Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
| | - Daniel Croll
- grid.10711.360000 0001 2297 7718Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchâtel, 2000 Neuchâtel, Switzerland
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10
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Liu L, Wang Y, Zhang D, Chen Z, Chen X, Su Z, He X. The Origin of Additive Genetic Variance Driven by Positive Selection. Mol Biol Evol 2021; 37:2300-2308. [PMID: 32243529 PMCID: PMC7403624 DOI: 10.1093/molbev/msaa085] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
Fisher's fundamental theorem of natural selection predicts no additive variance of fitness in a natural population. Consistently, studies in a variety of wild populations show virtually no narrow-sense heritability (h2) for traits important to fitness. However, counterexamples are occasionally reported, calling for a deeper understanding on the evolution of additive variance. In this study, we propose adaptive divergence followed by population admixture as a source of the additive genetic variance of evolutionarily important traits. We experimentally tested the hypothesis by examining a panel of ∼1,000 yeast segregants produced by a hybrid of two yeast strains that experienced adaptive divergence. We measured >400 yeast cell morphological traits and found a strong positive correlation between h2 and evolutionary importance. Because adaptive divergence followed by population admixture could happen constantly, particularly in species with wide geographic distribution and strong migratory capacity (e.g., humans), the finding reconciles the observation of abundant additive variances in evolutionarily important traits with Fisher's fundamental theorem of natural selection. Importantly, the revealed role of positive selection in promoting rather than depleting additive variance suggests a simple explanation for why additive genetic variance can be dominant in a population despite the ubiquitous between-gene epistasis observed in functional assays.
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Affiliation(s)
- Li Liu
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou, China
| | - Yayu Wang
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou, China
| | - Di Zhang
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou, China
| | - Zhuoxin Chen
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou, China
| | - Xiaoshu Chen
- Zhongshan School of Medicine, Sun Yat-Sen University, Guangzhou, China
| | - Zhijian Su
- Department of Cell Biology, Jinan University, Guangzhou, China
| | - Xionglei He
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou, China
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11
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12
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Lettinga N, Jacquet PO, André JB, Baumand N, Chevallier C. Environmental adversity is associated with lower investment in collective actions. PLoS One 2020; 15:e0236715. [PMID: 32730312 PMCID: PMC7392252 DOI: 10.1371/journal.pone.0236715] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Accepted: 07/13/2020] [Indexed: 02/07/2023] Open
Abstract
Environmental adversity is associated with a wide range of biological outcomes and behaviors that seem to fulfill a need to favor immediate over long-term benefits. Adversity is also associated with decreased investment in cooperation, which is defined as a long-term strategy. Beyond establishing the correlation between adversity and cooperation, the channel through which this relationship arises remains unclear. We propose that this relationship is mediated by a present bias at the psychological level, which is embodied in the reproduction-maintenance trade-off at the biological level. We report two pre-registered studies applying structural equation models to test this relationship on large-scale datasets (the European Values Study and the World Values Survey). The present study replicates existing research linking adverse environments (both in childhood and in adulthood) with decreased investment in adult cooperation and finds that this association is indeed mediated by variations in individuals’ reproduction-maintenance trade-off.
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Affiliation(s)
- N. Lettinga
- Laboratoire de Neurosciences Cognitives et Computationnelles (LNC), Département d’Études Cognitives, INSERM, École Normale Supérieure, PSL Research University, Paris, France
- * E-mail: (NL); (CC)
| | - P. O. Jacquet
- Laboratoire de Neurosciences Cognitives et Computationnelles (LNC), Département d’Études Cognitives, INSERM, École Normale Supérieure, PSL Research University, Paris, France
- Institut Jean-Nicod, Département d’Études Cognitives, INSERM, École Normale Supérieure, PSL Research University, Paris, France
| | - J-B. André
- Institut Jean-Nicod, Département d’Études Cognitives, INSERM, École Normale Supérieure, PSL Research University, Paris, France
| | - N. Baumand
- Institut Jean-Nicod, Département d’Études Cognitives, INSERM, École Normale Supérieure, PSL Research University, Paris, France
| | - C. Chevallier
- Laboratoire de Neurosciences Cognitives et Computationnelles (LNC), Département d’Études Cognitives, INSERM, École Normale Supérieure, PSL Research University, Paris, France
- * E-mail: (NL); (CC)
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13
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Carlson J, DeWitt WS, Harris K. Inferring evolutionary dynamics of mutation rates through the lens of mutation spectrum variation. Curr Opin Genet Dev 2020; 62:50-57. [PMID: 32619789 DOI: 10.1016/j.gde.2020.05.024] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Revised: 05/13/2020] [Accepted: 05/22/2020] [Indexed: 01/04/2023]
Abstract
There are many possible failure points in the transmission of genetic information that can produce heritable germline mutations. Once a mutation has been passed from parents to offspring for several generations, it can be difficult or impossible to identify its root cause; however, sometimes the nature of the ancestral and derived DNA sequences can provide mechanistic clues about a genetic change that happened hundreds or thousands of generations ago. Here, we review evidence that the sequence context 'spectrum' of germline mutagenesis has been evolving surprisingly rapidly over the history of humans and other species. We go on to discuss possible causal factors that might underlie rapid mutation spectrum evolution.
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Affiliation(s)
- Jedidiah Carlson
- Department of Genome Sciences, Foege Hall, University of Washington, Seattle, WA 98105, United States
| | - William S DeWitt
- Department of Genome Sciences, Foege Hall, University of Washington, Seattle, WA 98105, United States; Computational Biology Program, Fred Hutchinson Cancer Research Center, 1100 Eastlake Ave E, Seattle, WA 98109, United States
| | - Kelley Harris
- Department of Genome Sciences, Foege Hall, University of Washington, Seattle, WA 98105, United States; Computational Biology Program, Fred Hutchinson Cancer Research Center, 1100 Eastlake Ave E, Seattle, WA 98109, United States.
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14
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Life History Effects on Neutral Diversity Levels of Autosomes and Sex Chromosomes. Genetics 2020; 215:1133-1142. [PMID: 32554702 DOI: 10.1534/genetics.120.303119] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Accepted: 06/15/2020] [Indexed: 12/11/2022] Open
Abstract
Understanding the determinants of neutral diversity patterns on autosomes and sex chromosomes provides a bedrock for the interpretation of population genetic data; in particular, differences between the two informs our understanding of sex-specific demographic and mutation processes. While sex-specific age-structure and variation in reproductive success have long been known to affect neutral diversity, theoretical descriptions of these effects were complicated and lacking in generality, stymying attempts to relate diversity patterns of species with their life history. Here, we derive general yet simple expressions for these effects. In particular, we show that life history effects on X-to-autosome ratios of pairwise diversity levels (X:A diversity ratios) depend only on the male-to-female ratios of mutation rates, generation times, and reproductive variances. Our results reveal that changing the male-to-female ratio of generation times has opposite effects on X:A ratios of diversity and divergence. They also explain how sex-specific life histories modulate the response of X:A diversity ratios to changes in population size. More generally, they clarify that sex-specific life history-generation times in particular-should have marked effects on X:A diversity ratios in many taxa and enable further investigation of these effects.
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15
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Evans SR, Waldvogel D, Vasiljevic N, Postma E. Heritable spouse effects increase evolutionary potential of human reproductive timing. Proc Biol Sci 2019; 285:rspb.2017.2763. [PMID: 29643210 DOI: 10.1098/rspb.2017.2763] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Accepted: 03/19/2018] [Indexed: 12/31/2022] Open
Abstract
Sexual reproduction is inherently interactive, especially in animal species such as humans that exhibit extended pair bonding. Yet we have little knowledge of the role of male characteristics and their evolutionary impact on reproductive behavioural phenotypes, to the extent that biologists typically consider component traits (e.g. reproductive timing) as female-specific. Based on extensive genealogical data detailing the life histories of 6435 human mothers born across four centuries of modern history, we use an animal modelling approach to estimate the indirect genetic effect of men on the reproductive phenotype of their partners. These analyses show that a woman's reproductive timing (age at first birth) is influenced by her partner's genotype. This indirect genetic effect is positively correlated with the direct genetic effect expressed in women, such that total heritable variance in this trait is doubled when heritable partner effects are considered. Our study thus suggests that much of the heritable variation in women's reproductive timing is mediated via partner effects, and that the evolutionary potential of this trait is far greater than previously appreciated.
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Affiliation(s)
- Simon R Evans
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland .,Edward Grey Institute, Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
| | - Dominique Waldvogel
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland
| | - Nina Vasiljevic
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland
| | - Erik Postma
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland.,Centre for Ecology and Conservation, University of Exeter, Cornwall Campus, Penryn TR10 9FE, UK
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16
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Galor O, Klemp M. Human genealogy reveals a selective advantage to moderate fecundity. Nat Ecol Evol 2019; 3:853-857. [PMID: 30936434 DOI: 10.1038/s41559-019-0846-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2018] [Accepted: 02/18/2019] [Indexed: 11/09/2022]
Abstract
Life-history theory suggests that the level of fecundity of each organism reflects the effect of the trade-off between the quantity and quality of offspring on its long-run reproductive success. The present research provides evidence that moderate fecundity was conducive to long-run reproductive success in humans. Using a reconstructed genealogy for nearly half a million individuals in Quebec during the 1608-1800 period, the study establishes that, while high fecundity was associated with a larger number of children, perhaps paradoxically, moderate fecundity maximized the number of descendants after several generations. Moreover, the analysis further suggests that evolutionary forces decreased the level of fecundity in the population over this period, consistent with an additional finding that the level of fecundity that maximized long-run reproductive success was above the population mean. The research identifies several mechanisms that contributed to the importance of moderate fecundity for long-run reproductive success. It suggests that, while individuals with lower fecundity had fewer children, the observed hump-shaped effect of fecundity on long-run reproductive success reflects the beneficial effects of lower fecundity on various measures of child quality, such as marriageability and literacy, and thus on the reproductive success of each child.
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Affiliation(s)
| | - Marc Klemp
- University of Copenhagen, Copenhagen, Denmark.
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17
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Engelhardt SC, Bergeron P, Gagnon A, Dillon L, Pelletier F. Using Geographic Distance as a Potential Proxy for Help in the Assessment of the Grandmother Hypothesis. Curr Biol 2019; 29:651-656.e3. [PMID: 30744976 DOI: 10.1016/j.cub.2019.01.027] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2018] [Revised: 10/24/2018] [Accepted: 01/11/2019] [Indexed: 11/29/2022]
Abstract
Life-history theory predicts that selection could favor the decoupling of somatic and reproductive senescence if post-reproductive lifespan (PRLS) provides additional indirect fitness benefits [1, 2]. The grandmother hypothesis proposes that prolonged PRLS evolved because post-reproductive grandmothers gain inclusive fitness benefits by helping their daughters and grandchildren [3, 4]. Because most historical human data do not report direct evidence of help, we hypothesized that geographic distance between individuals may be inversely related to their capacity to help. Using an exceptionally detailed dataset of pre-industrial French settlers in the St. Lawrence Valley during the 17th and 18th centuries, we assessed the potential for grandmothers to improve their inclusive fitness by helping their descendants, and we evaluated how this effect varied with geographic distance, ranging between 0 and 325 km, while accounting for potential familial genetic and environmental effects [5-9]. Grandmothers (F0) who were alive allowed their daughters (F1) to increase their number of offspring (F2) born by 2.1 and to increase their number of offspring surviving to 15 years of age by 1.1 compared to when grandmothers were dead. However, the age at first reproduction was not influenced by the life status (alive or dead) of grandmothers. As geographic distance increased, the number of offspring born and lifetime reproductive success decreased, while the age at first reproduction increased, despite the grandmother being alive in these analyses. Our study suggests that geographic proximity has the potential to modulate inclusive fitness, supporting the grandmother hypothesis, and to contribute to our understanding of the evolution of PRLS.
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Affiliation(s)
- Sacha C Engelhardt
- Département de Biologie, Université de Sherbrooke, 2500 boul. de l'Université, Sherbrooke, QC J1K 2R1, Canada; Department of Biology, Institute of Ecology and Evolution, University of Bern, Ethologische Station Hasli, Wohlenstrasse 50a, CH-3032 Hinterkappelen, Switzerland
| | - Patrick Bergeron
- Department of Biology, Bishop's University, 2600 College St., Sherbrooke, QC J1M 1Z7, Canada.
| | - Alain Gagnon
- Département de démographie, Université de Montréal, 3150 Jean-Brillant St., Montréal, QC H3T 1N8, Canada
| | - Lisa Dillon
- Département de démographie, Université de Montréal, 3150 Jean-Brillant St., Montréal, QC H3T 1N8, Canada
| | - Fanie Pelletier
- Département de Biologie, Université de Sherbrooke, 2500 boul. de l'Université, Sherbrooke, QC J1K 2R1, Canada
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18
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Wolak ME, Arcese P, Keller LF, Nietlisbach P, Reid JM. Sex‐specific additive genetic variances and correlations for fitness in a song sparrow (
Melospiza melodia
) population subject to natural immigration and inbreeding. Evolution 2018; 72:2057-2075. [DOI: 10.1111/evo.13575] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2018] [Accepted: 07/23/2018] [Indexed: 12/15/2022]
Affiliation(s)
- Matthew E. Wolak
- School of Biological SciencesUniversity of Aberdeen Aberdeen Scotland
- Department of Biological SciencesAuburn University Auburn Alabama 36849
| | - Peter Arcese
- Department of Forest and Conservation SciencesUniversity of British Columbia Vancouver British Columbia Canada
| | - Lukas F. Keller
- Department of Evolutionary Biology and Environmental StudiesUniversity of Zurich Winterthurerstrasse 190 CH‐8057 Zurich Switzerland
- Zoological MuseumUniversity of Zurich Karl‐Schmid‐Strasse 4 CH‐8006 Zurich Switzerland
| | - Pirmin Nietlisbach
- Department of Evolutionary Biology and Environmental StudiesUniversity of Zurich Winterthurerstrasse 190 CH‐8057 Zurich Switzerland
- Department of ZoologyUniversity of British Columbia Vancouver British Columbia Canada
| | - Jane M. Reid
- School of Biological SciencesUniversity of Aberdeen Aberdeen Scotland
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19
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Briga M, Griffin RM, Berger V, Pettay JE, Lummaa V. What have humans done for evolutionary biology? Contributions from genes to populations. Proc Biol Sci 2018; 284:rspb.2017.1164. [PMID: 29118130 DOI: 10.1098/rspb.2017.1164] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2017] [Accepted: 10/09/2017] [Indexed: 12/15/2022] Open
Abstract
Many fundamental concepts in evolutionary biology were discovered using non-human study systems. Humans are poorly suited to key study designs used to advance this field, and are subject to cultural, technological, and medical influences often considered to restrict the pertinence of human studies to other species and general contexts. Whether studies using current and recent human populations provide insights that have broader biological relevance in evolutionary biology is, therefore, frequently questioned. We first surveyed researchers in evolutionary biology and related fields on their opinions regarding whether studies on contemporary humans can advance evolutionary biology. Almost all 442 participants agreed that humans still evolve, but fewer agreed that this occurs through natural selection. Most agreed that human studies made valuable contributions to evolutionary biology, although those less exposed to human studies expressed more negative views. With a series of examples, we discuss strengths and limitations of evolutionary studies on contemporary humans. These show that human studies provide fundamental insights into evolutionary processes, improve understanding of the biology of many other species, and will make valuable contributions to evolutionary biology in the future.
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Affiliation(s)
- Michael Briga
- Department of Biology, University of Turku, Turku 20014, Finland
| | - Robert M Griffin
- Department of Biology, University of Turku, Turku 20014, Finland
| | - Vérane Berger
- Department of Biology, University of Turku, Turku 20014, Finland
| | - Jenni E Pettay
- Department of Biology, University of Turku, Turku 20014, Finland
| | - Virpi Lummaa
- Department of Biology, University of Turku, Turku 20014, Finland
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20
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Measuring selection for genes that promote long life in a historical human population. Nat Ecol Evol 2017; 1:1773-1781. [DOI: 10.1038/s41559-017-0329-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2016] [Accepted: 08/30/2017] [Indexed: 11/08/2022]
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21
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van den Berg N, Beekman M, Smith KR, Janssens A, Slagboom PE. Historical demography and longevity genetics: Back to the future. Ageing Res Rev 2017; 38:28-39. [PMID: 28689042 DOI: 10.1016/j.arr.2017.06.005] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2017] [Revised: 06/30/2017] [Accepted: 06/30/2017] [Indexed: 11/30/2022]
Abstract
Research into the genetic component of human longevity can provide important insights in mechanisms that may protect against age-related diseases and multi-morbidity. Thus far only a limited number of robust longevity loci have been detected in either candidate or genome wide association studies. One of the issues in these genetic studies is the definition of the trait being either lifespan, including any age at death or longevity, i.e. survival above a diverse series of thresholds. Likewise heritability and segregation research have conflated lifespan with longevity. The heritability of lifespan estimated across most studies has been rather low. Environmental factors have not been sufficiently investigated and the total amount of genetic variance contributing to longevity has not been estimated in sufficiently well-defined and powered studies. Up to now, genetic longevity studies lack the required insights into the nature and size of the genetic component and the optimal strategies for meta-analysis and subject selection for Next Generation Sequencing efforts. Historical demographic data containing deep genealogical information may help in estimating the best definition and heritability for longevity, its transmission patterns in multi-generational datasets and may allow relevant additive and modifying environmental factors such as socio-economic status, geographical background, exposure to environmental effects, birth order, and number of children to be included. In this light historical demographic data may be very useful for identifying lineages in human populations that are worth investigating further by geneticists.
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Affiliation(s)
- Niels van den Berg
- Department of Molecular Epidemiology, Leiden University, Albinusdreef 2, 2333 ZA Leiden, The Netherlands.
| | - Marian Beekman
- Department of Molecular Epidemiology, Leiden University, Albinusdreef 2, 2333 ZA Leiden, The Netherlands.
| | - Ken Robert Smith
- Department of Family and Consumer Studies, Population Sciences, Huntsman Cancer Institute, University of Utah, 225 S. 1400 E. Rm 228, Salt Lake City, United States.
| | - Angelique Janssens
- Department of Economic, Social, and Demographic History, Radboud University, Erasmusplein 1, 6525 HT Nijmegen, The Netherlands.
| | - Pieternella Eline Slagboom
- Department of Molecular Epidemiology, Leiden University, Albinusdreef 2, 2333 ZA Leiden, The Netherlands.
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22
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Jasienska G, Bribiescas RG, Furberg AS, Helle S, Núñez-de la Mora A. Human reproduction and health: an evolutionary perspective. Lancet 2017; 390:510-520. [PMID: 28792413 DOI: 10.1016/s0140-6736(17)30573-1] [Citation(s) in RCA: 104] [Impact Index Per Article: 14.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/14/2015] [Revised: 08/30/2016] [Accepted: 12/20/2016] [Indexed: 01/05/2023]
Abstract
According to life history theory, increased investment in reproductive function (physiology and behaviour) at different times throughout the life course affects the risk of many diseases and, ultimately, longevity. Although genetic factors contribute to interindividual and interpopulation variation in reproductive traits, the dominant source of variability is phenotypic plasticity during development and adult life. Reproductive traits in both sexes evolved sensitivity to ecological conditions, as reflected in contemporary associations of hormone concentrations with geographical setting, nutritional status, and physical activity level. Lifetime exposure to increased concentrations of sex hormones is associated with the risk of some cancers, hence decreasing fertility patterns contribute to secular increases in their incidence. Conversely, increased investment in reproductive function might compromise somatic investment in health, such that faster sexual maturation and higher parity increases risk of diabetes and cardiovascular disease. An evolutionary perspective on reproductive biology could improve the efficacy of public health efforts to reduce the risk of hormone-sensitive cancers and other non-communicable diseases.
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Affiliation(s)
- Grazyna Jasienska
- Department of Environmental Health, Faculty of Health Sciences, Jagiellonian University Medical College, Krakow, Poland.
| | | | - Anne-Sofie Furberg
- Department of Community Medicine, Faculty of Health Sciences, University of Tromsø-The Arctic University of Norway, Tromsø, Norway; Department of Microbiology and Infection Control, University Hospital of North Norway, Tromsø, Norway
| | - Samuli Helle
- Section of Ecology, Department of Biology, University of Turku, Finland
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23
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Gavrus-Ion A, Sjøvold T, Hernández M, González-José R, Esteban Torné ME, Martínez-Abadías N, Esparza M. Measuring fitness heritability: Life history traits versus morphological traits in humans. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2017. [DOI: 10.1002/ajpa.23271] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Alina Gavrus-Ion
- Section of Zoology and Biological Anthropology; University of Barcelona; Barcelona Spain
| | | | - Miguel Hernández
- Section of Zoology and Biological Anthropology; University of Barcelona; Barcelona Spain
| | - Rolando González-José
- Instituto Patagónico de Ciencias Sociales y Humanas, Centro Nacional Patagónico, Consejo Nacional de Investigaciones Científicas y Técnicas; Puerto Madryn Argentina
| | - María Esther Esteban Torné
- Section of Zoology and Biological Anthropology; University of Barcelona; Barcelona Spain
- Institut de Recerca de la Biodiversitat (IRBIO), University of Barcelona; Barcelona Spain
| | - Neus Martínez-Abadías
- Section of Zoology and Biological Anthropology; University of Barcelona; Barcelona Spain
- Centre for Genomic Regulation (CRG); Barcelona Spain
- Universitat Pompeu Fabra; Barcelona Spain
| | - Mireia Esparza
- Section of Zoology and Biological Anthropology; University of Barcelona; Barcelona Spain
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24
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Lynch RF, Lynch EC. The impact of parental investment on lifetime reproductive success in Iceland. PeerJ 2017; 5:e2904. [PMID: 28133576 PMCID: PMC5251940 DOI: 10.7717/peerj.2904] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2016] [Accepted: 12/12/2016] [Indexed: 01/20/2023] Open
Abstract
BACKGROUND Demonstrating the impact that parents have on the fitness of their children is a crucial step towards understanding how parental investment has affected human evolution. Parents not only transfer genes to their children, they also influence their environments. By analyzing reproductive patterns within and between different categories of close relatives, this study provides insight into the genetic and environmental effects that parents have on the fitness of their offspring. METHODS We use data spanning over two centuries from an exceptionally accurate Icelandic genealogy, Íslendingabók, to analyze the relationship between the fertility rates of close relatives. Also, using genetic data, we determine narrow sense heritability estimates (h2) to further explore the genetic impact on lifetime reproductive success. Finally, we construct four simulations to model the expected contribution of genes and resources on reproductive success. RESULTS The relationship between the reproduction of all full sibling pairs was significant and positive across all birth decades (r = 0.19) while the reproductive relationship between parents and offspring was often negative across many decades and undetectable overall (r = 0.00) (Fig. 1 and Table 1). Meanwhile, genetic data among 8,456 pairs of full siblings revealed a narrow sense heritability estimate (h2) of 0.00 for lifetime reproductive success. A resources model (following the rule that resources are transmitted from parents to children, distributed equally among siblings, and are the only factor affecting reproductive success) revealed a similar trend: a negative relationship between parent and offspring reproduction (r = - 0.35) but a positive relationship among full siblings (r = 0.28). The relationship between parent and offspring lifetime reproductive success (LRS) and full sibling LRS was strongly and positively correlated across time (r = 0.799, p < 0.001). Similarly, the LRS among full siblings was positively correlated with both the LRS among half siblings (r = 0.532, p = 0.011) and the relationship between the LRS of aunts and uncles with their nieces and nephews (r = 0.438, p = 0.042). DISCUSSION We show that an individual's lifetime reproductive success is best predicted by the reproduction of their full and half siblings, but not their parents, grandparents or aunts and uncles. Because all siblings share at least one parent, we believe parental investment has had an important impact on fitness. Overall, these results indicate that direct parental investment, but not genes, is likely to have had an important and persistent impact on lifetime reproductive success across more than two centuries of Icelandic history.
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Affiliation(s)
- Robert F. Lynch
- Department of Anthropology, University of Missouri, Columbia, MO, United States
| | - Emily C. Lynch
- Department of Anthropology, University of Missouri, Columbia, MO, United States
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25
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Liu J, Duan C, Lummaa V. Parent-offspring conflict over family size in current China. Am J Hum Biol 2017; 29. [PMID: 28054420 DOI: 10.1002/ajhb.22946] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2016] [Revised: 10/07/2016] [Accepted: 11/16/2016] [Indexed: 11/09/2022] Open
Abstract
OBJECTIVES In China, the recent replacement of the one-child policy with a two-child policy could potentially change family ecology-parents may switch investment from exclusively one child to two. The parent-offspring conflict theory provides testable hypotheses concerning possible firstborn opposition toward further reproduction of their mother, and who wins the conflict. We tested the hypotheses that if there is any opposition, it will differ between sexes, weaken with offspring age and family resource availability, and affect maternal reproductive decision-making. METHODS Using survey data of 531 non-pregnant mothers of only one child from Xi'an (China), logistic regression was used to examine effects of age, family income, and sex on the attitudes of firstborn children toward having a sibling; ordinal regression was used to investigate how such attitudes affect maternal intention to reproduce again. RESULTS Firstborns' unsupportive attitude toward their mothers' further reproduction weakened with age and was overall more frequent in low-income families. Sons' unsupportive tendency displayed a somewhat U-shaped relationship, whereas daughters' weakened with family income; consequently, sons were more likely than daughters to be unsupportive in high-income families, suggesting a tendency to be more demanding. Forty-nine percent of mothers supported by their firstborns intended to reproduce again, whilst only 9% of mothers not supported by firstborns had such an intention. CONCLUSION Our study contributes to evolutionary literature on parent-offspring conflict and its influence on female reproductive strategy in modern human societies, and has also important implications for understanding fertility patterns and conducting interventions in family conflict in China.
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Affiliation(s)
- Jianghua Liu
- Institute for Population and Development Studies, Xi'an Jiaotong University, Xi'an, 710049, China
| | - Chongli Duan
- Institute for Population and Development Studies, Xi'an Jiaotong University, Xi'an, 710049, China
| | - Virpi Lummaa
- Department of Biology, University of Turku, Turku, FIN-20014, Finland
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26
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Hruschka DJ, Burger O. How does variance in fertility change over the demographic transition? Philos Trans R Soc Lond B Biol Sci 2016; 371:20150155. [PMID: 27022082 DOI: 10.1098/rstb.2015.0155] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/29/2015] [Indexed: 11/12/2022] Open
Abstract
Most work on the human fertility transition has focused on declines in mean fertility. However, understanding changes in the variance of reproductive outcomes can be equally important for evolutionary questions about the heritability of fertility, individual determinants of fertility and changing patterns of reproductive skew. Here, we document how variance in completed fertility among women (45-49 years) differs across 200 surveys in 72 low- to middle-income countries where fertility transitions are currently in progress at various stages. Nearly all (91%) of samples exhibit variance consistent with a Poisson process of fertility, which places systematic, and often severe, theoretical upper bounds on the proportion of variance that can be attributed to individual differences. In contrast to the pattern of total variance, these upper bounds increase from high- to mid-fertility samples, then decline again as samples move from mid to low fertility. Notably, the lowest fertility samples often deviate from a Poisson process. This suggests that as populations move to low fertility their reproduction shifts from a rate-based process to a focus on an ideal number of children. We discuss the implications of these findings for predicting completed fertility from individual-level variables.
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Affiliation(s)
- Daniel J Hruschka
- School of Human Evolution and Social Change, Arizona State University, Tempe, AZ, USA
| | - Oskar Burger
- School of Anthropology and Conservation, University of Kent, Canterbury, Kent, UK
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27
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Genetic Mechanisms Leading to Sex Differences Across Common Diseases and Anthropometric Traits. Genetics 2016; 205:979-992. [PMID: 27974502 DOI: 10.1534/genetics.116.193623] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2016] [Accepted: 12/08/2016] [Indexed: 01/10/2023] Open
Abstract
Common diseases often show sex differences in prevalence, onset, symptomology, treatment, or prognosis. Although studies have been performed to evaluate sex differences at specific SNP associations, this work aims to comprehensively survey a number of complex heritable diseases and anthropometric traits. Potential genetically encoded sex differences we investigated include differential genetic liability thresholds or distributions, gene-sex interaction at autosomal loci, major contribution of the X-chromosome, or gene-environment interactions reflected in genes responsive to androgens or estrogens. Finally, we tested the overlap between sex-differential association with anthropometric traits and disease risk. We utilized complementary approaches of assessing GWAS association enrichment and SNP-based heritability estimation to explore explicit sex differences, as well as enrichment in sex-implicated functional categories. We do not find consistent increased genetic load in the lower-prevalence sex, or a disproportionate role for the X-chromosome in disease risk, despite sex-heterogeneity on the X for several traits. We find that all anthropometric traits show less than complete correlation between the genetic contribution to males and females, and find a convincing example of autosome-wide genome-sex interaction in multiple sclerosis (P = 1 × 10-9). We also find some evidence for hormone-responsive gene enrichment, and striking evidence of the contribution of sex-differential anthropometric associations to common disease risk, implying that general mechanisms of sexual dimorphism determining secondary sex characteristics have shared effects on disease risk.
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28
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Guffanti G, Gameroff MJ, Warner V, Talati A, Glatt CE, Wickramaratne P, Weissman MM. Heritability of major depressive and comorbid anxiety disorders in multi-generational families at high risk for depression. Am J Med Genet B Neuropsychiatr Genet 2016; 171:1072-1079. [PMID: 27452917 DOI: 10.1002/ajmg.b.32477] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/09/2015] [Accepted: 07/08/2016] [Indexed: 11/08/2022]
Abstract
Family studies have shown that MDD is highly transmittable but have not studied its heritability. Twin studies show heritability of about 40% and do not include anxiety disorders. We assessed heritability of MDD and comorbid anxiety disorders in a multigenerational study of family members at high risk for MDD. In addition, we tested the hypothesis that examined clinical subtypes of MDD defined by early and late age of onset would be under relatively stronger genetic control than broadly defined DSM-IV MDD. The first generation with moderate to severe MDD was recruited from an ambulatory psychiatric treatment setting, and their descendants in the second, third, and fourth generation, were interviewed by clinicians up to six times during a 30-year period. Lifetime rates of MDD and anxiety disorders were collected for 545 participants from 65 multigenerational families. The heritability (h2 ) of MDD in this high risk sample was estimated at 67%. Anxiety and sequential comorbidity of anxiety disorders and MDD revealed h2 of 49% and 53%, respectively, and strong positive genetic correlation (rhog = 0.92, P = 7.3 × 10-7 ). Early onset MDD did not appear to be under greater genetic control than broadly defined DSM-IV MDD. Individuals who are direct descendants of subjects ascertained for moderate to severe MDD have strong genetic vulnerability to develop anxiety or MDD. Our findings support family based studies as appropriate and useful design to understand the heritability of common disorders such as MDD. © 2016 Wiley Periodicals, Inc.
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Affiliation(s)
- Guia Guffanti
- Department of Psychiatry, Columbia University College of Physicians and Surgeons, New York, New York.,Division of Epidemiology, New York State Psychiatric Institute, New York, New York
| | - Marc J Gameroff
- Department of Psychiatry, Columbia University College of Physicians and Surgeons, New York, New York.,Division of Epidemiology, New York State Psychiatric Institute, New York, New York
| | - Virginia Warner
- Department of Psychiatry, Columbia University College of Physicians and Surgeons, New York, New York.,Division of Epidemiology, New York State Psychiatric Institute, New York, New York
| | - Ardesheer Talati
- Department of Psychiatry, Columbia University College of Physicians and Surgeons, New York, New York.,Division of Epidemiology, New York State Psychiatric Institute, New York, New York
| | | | - Priya Wickramaratne
- Department of Psychiatry, Columbia University College of Physicians and Surgeons, New York, New York.,Division of Epidemiology, New York State Psychiatric Institute, New York, New York.,Mailman School of Public Health, Columbia University, New York, New York
| | - Myrna M Weissman
- Department of Psychiatry, Columbia University College of Physicians and Surgeons, New York, New York.,Division of Epidemiology, New York State Psychiatric Institute, New York, New York.,Mailman School of Public Health, Columbia University, New York, New York
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29
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Zhang WB, Sinha DB, Pittman WE, Hvatum E, Stroustrup N, Pincus Z. Extended Twilight among Isogenic C. elegans Causes a Disproportionate Scaling between Lifespan and Health. Cell Syst 2016; 3:333-345.e4. [PMID: 27720632 PMCID: PMC5111811 DOI: 10.1016/j.cels.2016.09.003] [Citation(s) in RCA: 58] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2016] [Revised: 07/30/2016] [Accepted: 09/08/2016] [Indexed: 12/21/2022]
Abstract
Although many genetic factors and lifestyle interventions are known to affect the mean lifespan of animal populations, the physiological variation displayed by individuals across their lifespans remains largely uncharacterized. Here, we use a custom culture apparatus to continuously monitor five aspects of aging physiology across hundreds of isolated Caenorhabditis elegans individuals kept in a constant environment from hatching until death. Aggregating these measurements into an overall estimate of senescence, we find two chief differences between longer- and shorter-lived individuals. First, though long- and short-lived individuals are physiologically equivalent in early adulthood, longer-lived individuals experience a lower rate of physiological decline throughout life. Second, and counter-intuitively, long-lived individuals have a disproportionately extended "twilight" period of low physiological function. While longer-lived individuals experience more overall days of good health, their proportion of good to bad health, and thus their average quality of life, is systematically lower than that of shorter-lived individuals. We conclude that, within a homogeneous population reared under constant conditions, the period of early-life good health is comparatively uniform, and the most plastic period in the aging process is end-of-life senescence.
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Affiliation(s)
- William B Zhang
- Department of Genetics, Washington University in St. Louis, St. Louis, MO 63110, USA; Department of Developmental Biology, Washington University in St. Louis, St. Louis, MO 63110, USA
| | - Drew B Sinha
- Department of Genetics, Washington University in St. Louis, St. Louis, MO 63110, USA; Department of Developmental Biology, Washington University in St. Louis, St. Louis, MO 63110, USA; Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA
| | - William E Pittman
- Department of Genetics, Washington University in St. Louis, St. Louis, MO 63110, USA; Department of Developmental Biology, Washington University in St. Louis, St. Louis, MO 63110, USA; Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA
| | - Erik Hvatum
- Department of Genetics, Washington University in St. Louis, St. Louis, MO 63110, USA; Department of Developmental Biology, Washington University in St. Louis, St. Louis, MO 63110, USA
| | - Nicholas Stroustrup
- Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA
| | - Zachary Pincus
- Department of Genetics, Washington University in St. Louis, St. Louis, MO 63110, USA; Department of Developmental Biology, Washington University in St. Louis, St. Louis, MO 63110, USA.
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30
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The effects of resource availability and the demographic transition on the genetic correlation between number of children and grandchildren in humans. Heredity (Edinb) 2016; 118:186-192. [PMID: 27624115 DOI: 10.1038/hdy.2016.81] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2016] [Revised: 07/29/2016] [Accepted: 08/01/2016] [Indexed: 11/08/2022] Open
Abstract
Studies of evolutionary change require an estimate of fitness, and lifetime reproductive success is widely used for this purpose. However, many species face a trade-off between the number and quality of offspring and in such cases number of grandoffspring may better represent the genetic contribution to future generations. Here, we apply quantitative genetic methods to a genealogical data set on humans from Finland to address how the genetic correlation between number of children and grandchildren is influenced by the severity of the trade-off between offspring quality and quantity, as estimated by different levels of resource access among individuals in the population. Further, we compare the genetic correlation before and after the demographic transition to low mortality and fertility rates. The genetic correlation was consistently high (0.79-0.92) with the strongest correlations occurring in individuals with higher access to resources and before the demographic transition, and a tendency for lower correlations in resource poor individuals and after the transition. These results indicate that number of grandoffspring is a slightly better predictor of long-term genetic fitness than number of offspring in a human population across a range of environmental conditions, and more generally, that patterns of resource availability need to be taken into account when estimating genetic covariances with fitness.
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What Explains the Heritability of Completed Fertility? Evidence from Two Large Twin Studies. Behav Genet 2016; 47:36-51. [PMID: 27522223 DOI: 10.1007/s10519-016-9805-3] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2016] [Accepted: 08/08/2016] [Indexed: 10/21/2022]
Abstract
In modern societies, individual differences in completed fertility are linked with genotypic differences between individuals. Explaining the heritability of completed fertility has been inconclusive, with alternative explanations centering on family formation timing, pursuit of education, or other psychological traits. We use the twin subsample from the Midlife Development in the United States study and the TwinsUK study to examine these issues. In total, 2606 adult twin pairs reported on their completed fertility, age at first birth and marriage, level of education, Big Five personality traits, and cognitive ability. Quantitative genetic Cholesky models were used to partition the variance in completed fertility into genetic and environmental variance that is shared with other phenotypes and residual variance. Genetic influences on completed fertility are strongly related to family formation timing and less strongly, but significantly, with psychological traits. Multivariate models indicate that family formation, demographic, and psychological phenotypes leave no residual genetic variance in completed fertility in either dataset. Results are largely consistent across U.S. and U.K. sociocultural contexts.
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Berg V, Lummaa V, Rickard IJ, Silventoinen K, Kaprio J, Jokela M. Genetic Associations Between Personality Traits and Lifetime Reproductive Success in Humans. Behav Genet 2016; 46:742-753. [DOI: 10.1007/s10519-016-9803-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2015] [Accepted: 07/27/2016] [Indexed: 02/01/2023]
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Scranton K, Lummaa V, Stearns SC. The importance of the timescale of the fitness metric for estimates of selection on phenotypic traits during a period of demographic change. Ecol Lett 2016; 19:854-61. [DOI: 10.1111/ele.12619] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2016] [Revised: 04/12/2016] [Accepted: 04/21/2016] [Indexed: 11/26/2022]
Affiliation(s)
- Katherine Scranton
- Department of Ecology and Evolutionary Biology; Yale University; 165 Prospect Street CT 06520-8102 New Haven CT USA
| | - Virpi Lummaa
- Department of Biology; University of Turku; FI-20014 Turku Finland
| | - Stephen C. Stearns
- Department of Ecology and Evolutionary Biology; Yale University; 165 Prospect Street CT 06520-8102 New Haven CT USA
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34
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Hayward AD, Nenko I, Lummaa V. Early-life reproduction is associated with increased mortality risk but enhanced lifetime fitness in pre-industrial humans. Proc Biol Sci 2015; 282:20143053. [PMID: 25740893 DOI: 10.1098/rspb.2014.3053] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Abstract
The physiology of reproductive senescence in women is well understood, but the drivers of variation in senescence rates are less so. Evolutionary theory predicts that early-life investment in reproduction should be favoured by selection at the cost of reduced survival and faster reproductive senescence. We tested this hypothesis using data collected from preindustrial Finnish church records. Reproductive success increased up to age 25 and was relatively stable until a decline from age 41. Women with higher early-life fecundity (ELF; producing more children before age 25) subsequently had higher mortality risk, but high ELF was not associated with accelerated senescence in annual breeding success. However, women with higher ELF experienced faster senescence in offspring survival. Despite these apparent costs, ELF was under positive selection: individuals with higher ELF had higher lifetime reproductive success. These results are consistent with previous observations in both humans and wild vertebrates that more births and earlier onset of reproduction are associated with reduced survival, and with evolutionary theory predicting trade-offs between early reproduction and later-life survival. The results are particularly significant given recent increases in maternal ages in many societies and the potential consequences for offspring health and fitness.
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Affiliation(s)
- Adam D Hayward
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, UK Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK
| | - Ilona Nenko
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, UK Department of Environmental Health, Faculty of Health Sciences, Jagiellonian University, Krakow, Poland
| | - Virpi Lummaa
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, UK
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Scarabino D, Scacchi R, Pinto A, Corbo RM. Genetic Basis of the Relationship Between Reproduction and Longevity: A Study on Common Variants of Three Genes in Steroid Hormone Metabolism—CYP17, HSD17B1, and COMT. Rejuvenation Res 2015; 18:464-72. [DOI: 10.1089/rej.2015.1665] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- Daniela Scarabino
- CNR Institute of Cellular Biology and Neurobiology, Monterotondo Scalo, Rome, Italy
| | - Renato Scacchi
- CNR Institute of Molecular Biology and Pathology, Rome, Italy
| | - Alessandro Pinto
- Experimental Medicine Department, Food Science and Human Nutrition Research Unit, La Sapienza University, Rome, Italy
| | - Rosa Maria Corbo
- CNR Institute of Molecular Biology and Pathology, Rome, Italy
- Department of Biology and Biotechnology, La Sapienza University, Rome, Italy
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36
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Balbontín J, Møller AP. Environmental conditions during early life accelerate the rate of senescence in a short-lived passerine bird. Ecology 2015; 96:948-59. [PMID: 26230016 DOI: 10.1890/14-1274.1] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Environmental conditions experienced in early life may shape subsequent phenotypic traits including life history. We investigated how predation risk caused by domestic cats (Felis silvestris catus) and local breeding density affected patterns of reproductive and survival senescence in Barn Swallows (Hirundo rustica) breeding semicolonially in Denmark. We recorded the abundance of cats and the number of breeding pairs at 39 breeding sites during 24 years and related these to age-specific survival rate and reproductive senescence to test predictions of the life history theory of senescence. We found evidence for actuarial senescence for the first time in this species. Survival rate increased until reaching a plateau in midlife and then decreased later. We also found that survival rate was higher for males than females. Local breeding density or predation risk did not affect survival as predicted by theory. Barn Swallows with short lives did not invest more in reproduction in early life, inconsistent with expectations for trade-offs between reproduction and survival as theory suggests. However, we found that the rate of reproductive decline during senescence was steeper for individuals exposed to intense competition, and predation pressure accelerated the rate of reproductive senescence, but only in sites with many breeding pairs. These latter results are in accordance with one of the predictions suggested by the life history theory of aging. These results emphasize the importance of considering intraspecific competition and interspecific interactions such as predation when analyzing reproductive and actuarial senescence.
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Intergenerational Transmission of Reproductive Traits in Spain during the Demographic Transition. HUMAN NATURE-AN INTERDISCIPLINARY BIOSOCIAL PERSPECTIVE 2015; 19:23-43. [PMID: 26181376 DOI: 10.1007/s12110-008-9032-6] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
In this paper intergenerational dimensions of reproductive behavior are studied within the context of the experience of a mid-sized Spanish town just before and during the demographic transition. Different indicators of reproduction are used in bivariate and multivariate approaches. Fertility shows a small, often statistically significant intergenerational dimension, with stronger effects working through women and their mothers than those stemming from the families of their husbands. These effects are materialized mainly through duration-related fertility variables, are singularly absent for variables such as age at first birth or birth intervals, and are much stronger in the case of firstborn daughters than with later siblings. There is a substantial increase in the strength of intergenerational effects during the course of the demographic transition, most visible in age at last birth and duration of reproduction (between women and their mothers), as well as in the effects working through the families of their husbands. These results underscore the on-going importance of biological dimensions of reproduction as well as the way attitudes toward reproduction are taught within the family. The changes identified in this study suggest that the transmission of values and attitudes became more important for reproductive outcomes during this period of demographic modernization.
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Intergenerational and Genealogical Approaches for the Study of Longevity in the Saguenay-Lac-St-Jean Population. HUMAN NATURE-AN INTERDISCIPLINARY BIOSOCIAL PERSPECTIVE 2015; 19:70-86. [PMID: 26181379 DOI: 10.1007/s12110-008-9031-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
The mechanisms of longevity have been the subject of investigations for a number of years. Although the role of genetic factors is generally acknowledged, important questions persist regarding the relative impact of environmental exposures, lifestyle characteristics, and genes. The BALSAC population register offers a unique opportunity to study longevity from an intergenerational and genealogical point of view. Individuals from the Saguenay-Lac-St-Jean population who died at age 90 or older between 1950 and 1974 were selected from this database (n = 576), along with a control group of individuals born in the same period who died between 50 and 75 years of age. For these subjects and controls, spouses' ages at death and parental ages at death and at their birth were investigated using regression analysis. Genealogical reconstructions were carried out for each individual, and various analyses were performed on both groups. Both fathers' and mothers' mean ages at death were significantly higher among the longer-lived cases than among controls whereas spouses' ages at death and parental ages at birth had no effect. Regression analysis confirmed the positive effect of both fathers' and mothers' age at death. Mean kinship coefficients for the parents' generations displayed significant differences, indicating that kinship was higher among subjects than controls (this effect was stronger among the oldest 10% of the subjects). Frequencies and genetic contributions of ancestors were very similar for the two groups, and none of these ancestors appeared more likely to have introduced genetic variants involved in longevity patterns in this French Canadian population.
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39
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Natural fertility and longevity. Fertil Steril 2015; 103:1109-16. [PMID: 25934597 DOI: 10.1016/j.fertnstert.2015.03.030] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2015] [Revised: 03/23/2015] [Accepted: 03/25/2015] [Indexed: 12/25/2022]
Abstract
Much empirical work suggests an association between fertility patterns and longevity. I review this association, focusing on natural fertility populations and emphasizing the role of both the timing and the intensity of fertility. Overall, it appears that although age at last reproduction routinely correlates with post-reproductive longevity, suggesting a slower rate of senescence among late fertile women, the same is not true for age at first reproduction and parity. I discuss some of the conceptual and methodologic issues, as well as the sources of the biases, that have been a persistent feature of this body of research. I conclude by suggesting avenues of research that could be initiated or pursued in the area.
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FERTILITY PATTERN AND FITNESS OF THE SPANISH-MEXICAN COLONISTS OF CALIFORNIA (1742-1876). J Biosoc Sci 2015; 48:192-205. [PMID: 26054864 DOI: 10.1017/s0021932015000140] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
The analysis of fertility in colonizing populations is of great interest, since its individuals experience a major environmental change, and fertility rates can reflect the level of adaptation of the population to its new conditions. Using Northrop's genealogical compilations, this paper examines the fertility pattern of California's early Spanish-Mexican colonists between 1742 and 1876, their fitness levels and their trend across time throughout the colonizing period. A total of 197 women from 599 compiled families who had completed their reproductive period and had at least one child were analysed. The correlations among variables were also analysed in order to infer the relationship between longevity and fertility, and the influence of fertility determinants. The results show a natural fertility pattern, with a very young age at marriage and birth of first child (17.2 and 19.1 years respectively), and also a young age at last childbirth (38.8 years). The population's fitness showed greater values than for contemporary European populations, with 8 of 9.2 children surviving to adulthood, in comparison with 55% of newborns in Finland for the same period, suggesting a good adaptation of the population to their new environmental conditions. No relationship between fertility and lifespan was observed, as has been reported by other authors and in opposition to classical theories. A temporal trend in the number of children, consisting of three different phases, was observed, in accordance with the stability of living conditions in the region.
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41
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Hayward AD, Lummaa V, Bazykin GA. Fitness Consequences of Advanced Ancestral Age over Three Generations in Humans. PLoS One 2015; 10:e0128197. [PMID: 26030274 PMCID: PMC4451146 DOI: 10.1371/journal.pone.0128197] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2014] [Accepted: 04/24/2015] [Indexed: 11/18/2022] Open
Abstract
A rapid rise in age at parenthood in contemporary societies has increased interest in reports of higher prevalence of de novo mutations and health problems in individuals with older fathers, but the fitness consequences of such age effects over several generations remain untested. Here, we use extensive pedigree data on seven pre-industrial Finnish populations to show how the ages of ancestors for up to three generations are associated with fitness traits. Individuals whose fathers, grandfathers and great-grandfathers fathered their lineage on average under age 30 were ~13% more likely to survive to adulthood than those whose ancestors fathered their lineage at over 40 years. In addition, females had a lower probability of marriage if their male ancestors were older. These findings are consistent with an increase of the number of accumulated de novo mutations with male age, suggesting that deleterious mutations acquired from recent ancestors may be a substantial burden to fitness in humans. However, possible non-mutational explanations for the observed associations are also discussed.
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Affiliation(s)
- Adam D Hayward
- Department of Animal and Plant Sciences, Alfred Denny Building, University of Sheffield, Western Bank, Sheffield, S10 2TN, United Kingdom; Institute of Evolutionary Biology, University of Edinburgh, Charlotte Auerbach Road, Edinburgh, EH9 3FL, United Kingdom
| | - Virpi Lummaa
- Department of Animal and Plant Sciences, Alfred Denny Building, University of Sheffield, Western Bank, Sheffield, S10 2TN, United Kingdom
| | - Georgii A Bazykin
- Institute for Information Transmission Problems of the Russian Academy of Sciences (Kharkevich Institute), Bolshoy Karetny pereulok 19, Moscow, 127994, Russia; Department of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Vorbyevy Gory 1-73, Moscow, 119992, Russia; Belozersky Institute for Physical and Chemical Biology, Lomonosov Moscow State University, Vorbyevy Gory 1-40, Moscow, 119992, Russia; Pirogov Russian National Research Medical University, Ul. Ostrovityanova 1, Moscow, 117997, Russia
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42
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Abstract
Under the traditional mutation load model based on multiplicative fitness effects, the load in a population is 1−e−U, where U is the genomic deleterious mutation rate. Because this load becomes high under large U, synergistic epistasis has been proposed as one possible means of reducing the load. However, experiments on model organisms attempting to detect synergistic epistasis have often focused on a quadratic fitness model, with the resulting general conclusion being that epistasis is neither common nor strong. Here, I present a model of additive fitness effects and show that, unlike multiplicative effects, the equilibrium frequency of an allele under additivity is dependent on the average absolute fitness of the population. The additive model then results in a load of U/(U +1), which is much lower than 1−e−U for large U. Numerical iterations demonstrate that this analytic derivation holds as a good approximation under biologically relevant values of selection coefficients and U. Additionally, regressions onto Drosophila mutation accumulation data suggest that the common method of inferring epistasis by detecting large quadratic terms from regressions is not always necessary, as the additive model fits the data well and results in synergistic epistasis. Furthermore, the additive model gives a much larger reduction in load than the quadratic model when predicted from the same data, indicating that it is important to consider this additive model in addition to the quadratic model when inferring epistasis from mutation accumulation data.
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43
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Bolund E, Hayward A, Pettay JE, Lummaa V. Effects of the demographic transition on the genetic variances and covariances of human life-history traits. Evolution 2015; 69:747-55. [DOI: 10.1111/evo.12598] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2014] [Accepted: 12/05/2014] [Indexed: 11/28/2022]
Affiliation(s)
- Elisabeth Bolund
- Department of Animal & Plant Sciences; University of Sheffield; Sheffield S10 2TN United Kingdom
- Evolutionary Biology Centre; Uppsala University; Uppsala SE-752 36 Sweden
| | - Adam Hayward
- Department of Animal & Plant Sciences; University of Sheffield; Sheffield S10 2TN United Kingdom
| | - Jenni E. Pettay
- Department of Biology; University of Turku; Turku FIN-20014 Finland
| | - Virpi Lummaa
- Department of Animal & Plant Sciences; University of Sheffield; Sheffield S10 2TN United Kingdom
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44
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Genotype × cohort interaction on completed fertility and age at first birth. Behav Genet 2014; 45:71-83. [PMID: 25491394 DOI: 10.1007/s10519-014-9693-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2014] [Accepted: 10/30/2014] [Indexed: 10/24/2022]
Abstract
Microevolutionary projections use empirical estimates of genetic covariation between physical or psychological phenotypes and reproductive success to forecast changes in the population distributions of those phenotypes over time. The validity of these projections depends on relatively consistent heritabilities of fertility-relevant outcomes and consistent genetic covariation between fertility and other physical or psychological phenotypes across generations. However, well-documented, rapidly changing mean trends in the level and timing of fertility may have been accompanied by differences in the genetic mechanisms of fertility. Using a sample of 933 adult twin pairs from the Midlife Development in the United States study, we demonstrate that genetic influences on completed fertility and age at first birth were trivial for the 1920-1935 birth cohort, but rose substantially for the 1936-1955 birth cohort. For the 1956-1970 birth cohort, genetic influences on completed fertility, but not age at first birth, persisted. Because the heritability of fertility is subject to change dynamically with the social context, it is difficult to project selection pressures or the rate at which selection will occur.
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45
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Helle S, Brommer JE, Pettay JE, Lummaa V, Enbuske M, Jokela J. Evolutionary demography of agricultural expansion in preindustrial northern Finland. Proc Biol Sci 2014; 281:20141559. [PMID: 25232134 PMCID: PMC4211450 DOI: 10.1098/rspb.2014.1559] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2014] [Accepted: 08/19/2014] [Indexed: 11/12/2022] Open
Abstract
A shift from nomadic foraging to sedentary agriculture was a major turning point in human evolutionary history, increasing our population size and eventually leading to the development of modern societies. We however lack understanding of the changes in life histories that contributed to the increased population growth rate of agriculturalists, because comparable individual-based reproductive records of sympatric populations of agriculturalists and foragers are rarely found. Here, we compared key life-history traits and population growth rate using comprehensive data from the seventieth to nineteenth century Northern Finland: indigenous Sami were nomadic hunter-fishers and reindeer herders, whereas sympatric agricultural Finns relied predominantly on animal husbandry. We found that agriculture-based families had higher lifetime fecundity, faster birth spacing and lower maternal mortality. Furthermore, agricultural Finns had 6.2% higher annual population growth rate than traditional Sami, which was accounted by differences between the subsistence modes in age-specific fecundity but not in mortality. Our results provide, to our knowledge, the most detailed demonstration yet of the demographic changes and evolutionary benefits that resulted from agricultural revolution.
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Affiliation(s)
- Samuli Helle
- Section of Ecology, Department of Biology, University of Turku, 20014 Turku, Finland
| | - Jon E Brommer
- Section of Ecology, Department of Biology, University of Turku, 20014 Turku, Finland
| | - Jenni E Pettay
- Section of Ecology, Department of Biology, University of Turku, 20014 Turku, Finland
| | - Virpi Lummaa
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - Matti Enbuske
- Department of History, University of Oulu, 90014 Oulu, Finland
| | - Jukka Jokela
- EAWAG, Swiss Federal Institute of Aquatic Science and Technology, Institute of Integrative Biology, 8600 Dübendorf, Switzerland ETH-Zürich, Institute of Integrative Biology, 8600 Dübendorf, Switzerland
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46
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Zhang H, Rebke M, Becker PH, Bouwhuis S. Fitness prospects: effects of age, sex and recruitment age on reproductive value in a long-lived seabird. J Anim Ecol 2014; 84:199-207. [DOI: 10.1111/1365-2656.12259] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2013] [Accepted: 06/05/2014] [Indexed: 11/28/2022]
Affiliation(s)
- He Zhang
- Institute of Avian Research ‘Vogelwarte Helgoland’; An der Vogelwarte 21 D-26386 Wilhelmshaven Germany
| | - Maren Rebke
- Avitec Research GbR; Sachsenring 11 D-27711 Osterholz-Scharmbeck Germany
| | - Peter H. Becker
- Institute of Avian Research ‘Vogelwarte Helgoland’; An der Vogelwarte 21 D-26386 Wilhelmshaven Germany
| | - Sandra Bouwhuis
- Institute of Avian Research ‘Vogelwarte Helgoland’; An der Vogelwarte 21 D-26386 Wilhelmshaven Germany
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47
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Eijkemans MJC, van Poppel F, Habbema DF, Smith KR, Leridon H, te Velde ER. Too old to have children? Lessons from natural fertility populations. Hum Reprod 2014; 29:1304-12. [PMID: 24676403 DOI: 10.1093/humrep/deu056] [Citation(s) in RCA: 89] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
STUDY QUESTION Is it possible to construct an age curve denoting the ages above which women are biologically too old to reproduce? SUMMARY ANSWER We constructed a curve based on the distribution of female age at last birth in natural fertility populations reflecting the ages above which women have become biologically too old to have children. WHAT IS KNOWN ALREADY The median age at last birth (ALB) for females is ∼40-41 years of age across a range of natural fertility populations. This suggests that there is a fairly universal pattern of age-related fertility decline. However, little is known about the distribution of female ALB and in the present era of modern birth control, it is impossible to assess the age-specific distribution of ALB. Reliable information is lacking that could benefit couples who envisage delaying childbearing. STUDY DESIGN, SIZE, DURATION This study is a review of high-quality historical data sets of natural fertility populations in which the distributions of female age at last birth were analysed. The studies selected used a retrospective cohort design where women were followed as they age through their reproductive years. PARTICIPANTS/MATERIALS, SETTING, METHODS Using a common set of eligibility criteria, large data files of natural fertility populations were prepared such that the analysis could be performed in parallel across all populations. Data on the ALB and confounding variables are presented as box and whisker plots denoting the 5th, 25th, 50th, 75th and 95th percentile distribution of the age at last birth for each population. The analysis includes the estimation of Kaplan-Meier curves for age at last birth of each population. The hazard curve for ALB was obtained by plotting the smoothed hazard curve of each population and taking the lowest hazard within a time period of at least 5 years. This lowest hazard curve was then transformed into a cumulative distribution function representing the composite curve of the end of biological fertility. This curve was based on the data from three of the six populations, having the lowest hazards of end of fertility. MAIN RESULTS AND THE ROLE OF CHANCE We selected six natural fertility populations comprising 58 051 eligible women. While these populations represent different historical time periods, the distribution of the ages at last birth is remarkably similar. The curve denoting the end of fertility indicates that <3% of women had their last birth at age 20 years meaning that almost 98% were able to have at least one child thereafter. The cumulative curve for the end of fertility slowly increases from 4.5% at age 25 years, 7% at age 30 years, 12% at age 35 years and 20% at age 38 years. Thereafter, it rises rapidly to about 50% at age 41, almost 90% at age 45 years and approaching 100% at age 50 years. LIMITATIONS, REASONS FOR CAUTION It may be argued that these historical fertility data do not apply to the present time; however, the age-dependent decline in fertility is similar to current populations and is consistent with the pattern seen in women treated by donor insemination. Furthermore, for reproductive ageing, we note that it is unlikely that such a conserved biological process with a high degree of heritability would have changed significantly within a century or two. WIDER IMPLICATIONS OF THE FINDINGS We argue that the age-specific ALB curve can be used to counsel couples who envisage having children in the future. Our findings challenge the unsubstantiated pessimism regarding the possibility of natural conception after age 35 years. STUDY FUNDING/COMPETING INTEREST(S) No external funding was either sought or obtained for this study. There are no conflicts of interest to be declared.
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Affiliation(s)
- Marinus J C Eijkemans
- Julius Centre for Health Sciences and Primary Care, University Medical Centre Utrecht, Utrecht, The Netherlands
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Edward DA, Poissant J, Wilson AJ, Chapman T. Sexual conflict and interacting phenotypes: a quantitative genetic analysis of fecundity and copula duration in Drosophila melanogaster. Evolution 2014; 68:1651-60. [PMID: 24495114 DOI: 10.1111/evo.12376] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2013] [Accepted: 01/27/2014] [Indexed: 11/28/2022]
Abstract
Many reproductive traits that have evolved under sexual conflict may be influenced by both sexes. Investigation of the genetic architecture of such traits can yield important insight into their evolution, but this entails that the heritable component of variation is estimated for males and females-as an interacting phenotype. We address the lack of research in this area through an investigation of egg production and copula duration in the fruit fly, Drosophila melanogaster. Despite egg production rate being determined by both sexes, which may cause sexual conflict, an assessment of this trait as an interacting phenotype is lacking. It is currently unclear whether copula duration is determined by males and/or females. We found significant female, but not male, genetic variance for egg production rate that may indicate reduced potential for ongoing sexually antagonistic coevolution. In contrast, copula duration was determined by significant genetic variance in both sexes. We also identified genetic variation in egg retention among virgin females. Although previously identified in wild populations, it is unclear why this should be present in a laboratory stock. This study provides a novel insight into the shared genetic architecture of reproductive traits that are the subject of sexual conflict.
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Affiliation(s)
- Dominic A Edward
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, Norfolk NR4 7TJ, United Kingdom; Mammalian Behaviour & Evolution, Institute of Integrative Biology, University of Liverpool, Leahurst Campus, Chester High Road, Neston CH64 7TE, United Kingdom.
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Hayward AD, Mar KU, Lahdenperä M, Lummaa V. Early reproductive investment, senescence and lifetime reproductive success in female Asian elephants. J Evol Biol 2014; 27:772-83. [PMID: 24580655 PMCID: PMC4237172 DOI: 10.1111/jeb.12350] [Citation(s) in RCA: 65] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2013] [Revised: 01/20/2014] [Accepted: 01/25/2014] [Indexed: 11/30/2022]
Abstract
The evolutionary theory of senescence posits that as the probability of extrinsic mortality increases with age, selection should favour early-life over late-life reproduction. Studies on natural vertebrate populations show early reproduction may impair later-life performance, but the consequences for lifetime fitness have rarely been determined, and little is known of whether similar patterns apply to mammals which typically live for several decades. We used a longitudinal dataset on Asian elephants (Elephas maximus) to investigate associations between early-life reproduction and female age-specific survival, fecundity and offspring survival to independence, as well as lifetime breeding success (lifetime number of calves produced). Females showed low fecundity following sexual maturity, followed by a rapid increase to a peak at age 19 and a subsequent decline. High early life reproductive output (before the peak of performance) was positively associated with subsequent age-specific fecundity and offspring survival, but significantly impaired a female's own later-life survival. Despite the negative effects of early reproduction on late-life survival, early reproduction is under positive selection through a positive association with lifetime breeding success. Our results suggest a trade-off between early reproduction and later survival which is maintained by strong selection for high early fecundity, and thus support the prediction from life history theory that high investment in reproductive success in early life is favoured by selection through lifetime fitness despite costs to later-life survival. That maternal survival in elephants depends on previous reproductive investment also has implications for the success of (semi-)captive breeding programmes of this endangered species.
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Affiliation(s)
- A D Hayward
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, UK
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Perfect genetic correlation between number of offspring and grandoffspring in an industrialized human population. Proc Natl Acad Sci U S A 2014; 111:1032-6. [PMID: 24395780 DOI: 10.1073/pnas.1310058111] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Reproductive success is widely used as a measure of fitness. However, offspring quantity may not reflect the genetic contribution to subsequent generations if there is nonrandom variation in offspring quality. Offspring quality is likely to be an important component of human fitness, and tradeoffs between offspring quantity and quality have been reported. As such, studies using offspring quantity as a proxy for fitness may yield erroneous projections of evolutionary change, for example if there is little or no genetic variance in number of grandoffspring or if its genetic variance is to some extent independent of the genetic variance in number of offspring. To address this, we performed a quantitative genetic analysis on the reproductive history of 16,268 Swedish twins born between 1915 and 1929 and their offspring. There was significant sex limitation in the sources of familial variation, but the magnitudes of the genetic and environmental effects were the same in males and females. We found significant genetic variation in number of offspring and grandoffspring (heritability = 24% and 16%, respectively), and genetic variation in the two variables completely overlapped--i.e., there was a perfect genetic correlation between number of offspring and grandoffspring. Shared environment played a smaller but significant role in number of offspring and grandoffspring; again, there was a perfect shared environmental correlation between the two variables. These findings support the use of lifetime reproductive success as a proxy for fitness in populations like the one used here, but we caution against generalizing this conclusion to other kinds of human societies.
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