1
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Zheng C, Wang C, Sha T, Wang G, Guan Y, He H, Jin S, Geng X. The wavelet transform assisted laser-induced fluorescence detector with high sensitivity. Talanta 2025; 285:127257. [PMID: 39616753 DOI: 10.1016/j.talanta.2024.127257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2024] [Revised: 11/18/2024] [Accepted: 11/19/2024] [Indexed: 01/23/2025]
Abstract
A wavelet transform assisted laser-induced fluorescence detector with high sensitivity was developed and evaluated. An unconventional microscope objective with a numerical aperture (NA) of 0.5 and a working distance (WD) of 4.0 mm was employed, which improved fluorescence collection efficiency, increasing SNR to about 5 times. An aspherical lens was used in the collection optical path to reduce the diameter of the fluorescence imaging size, increasing the SNR to about 1.3 times. The "inverted suction injection" method of flow injection analysis (FIA) was used for the first time in LIF evaluation to reduce contamination errors and improve the accuracy of ultra-trace analysis. The wavelet transform method was proposed for data processing of LIF signals, which can reduce noise from 0.009 mV to 0.002 mV without changing the peak height and peak width. The limit of detection (LOD, 3σ method) for sodium fluorescein was 9.7 × 10-14 M or 3.9 fluorescein molecules in 68 pL detection volume, which was the lowest level of LIFs evaluated by FIA mode. The LIF combined with capillary electrophoresis (CE) achieved an LOD of 4.9 × 10-15 M for fluorescein sodium, which is the best level that has been reported.
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Affiliation(s)
- Chao Zheng
- School of Science, Dalian Maritime University, No. 1 Linghai Road, Ganjingzi District, Dalian, 116024, PR China; CAS Key Laboratory of Separation Sciences for Analytical Chemistry, Key Laboratory of Deep-Sea Composition Detection Technology of Liaoning Province, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian, 116023, PR China
| | - Chuanliang Wang
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry, Key Laboratory of Deep-Sea Composition Detection Technology of Liaoning Province, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian, 116023, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Tao Sha
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry, Key Laboratory of Deep-Sea Composition Detection Technology of Liaoning Province, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian, 116023, PR China
| | - Guiqiu Wang
- School of Science, Dalian Maritime University, No. 1 Linghai Road, Ganjingzi District, Dalian, 116024, PR China.
| | - Yafeng Guan
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry, Key Laboratory of Deep-Sea Composition Detection Technology of Liaoning Province, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian, 116023, PR China; Institute of Deep-Sea Science & Engineering, CAS, 28 Luhuitou Road, Sanya, 572000, PR China
| | - Hui He
- The First Affiliated Hospital of Dalian Medical University, PR China
| | - Shi Jin
- The First Affiliated Hospital of Dalian Medical University, PR China
| | - Xuhui Geng
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry, Key Laboratory of Deep-Sea Composition Detection Technology of Liaoning Province, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian, 116023, PR China.
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Butterworth AL, Golozar M, Estlack Z, McCauley J, Mathies RA, Kim J. Integrated high performance microfluidic organic analysis instrument for planetary and space exploration. LAB ON A CHIP 2024; 24:2551-2560. [PMID: 38624013 DOI: 10.1039/d4lc00012a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/17/2024]
Abstract
The exploration of our solar system to characterize the molecular organic inventory will enable the identification of potentially habitable regions and initiate the search for biosignatures of extraterrestrial life. However, it is challenging to perform the required high-resolution, high-sensitivity chemical analyses in space and in planetary environments. To address this challenge, we have developed a microfluidic organic analyzer (MOA) instrument that consists of a multilayer programmable microfluidic analyzer (PMA) for fluidic processing at the microliter scale coupled with a microfabricated glass capillary electrophoresis (CE) wafer for separation and analysis of the sample components. Organic analytes are labeled with a functional group-specific (e.g. amine, organic acid, aldehyde) fluorescent dye, separated according to charge and hydrodynamic size by capillary electrophoresis (CE), and detected with picomolar limit of detection (LOD) using laser-induced fluorescence (LIF). Our goal is a sensitive automated instrument and autonomous process that enables sample-in to data-out performance in a flight capable format. We present here the design, fabrication, and operation of a technology development unit (TDU) that meets these design goals with a core mass of 3 kg and a volume of <5 L. MOA has a demonstrated resolution of 2 × 105 theoretical plates for relevant amino acids using a 15 cm long CE channel and 467 V cm-1. The LOD of LIF surpasses 100 pM (0.01 ppb), enabling biosignature detection in harsh environments on Earth. MOA is ideally suited for probing biosignatures in potentially habitable destinations on icy moons such as Europa and Enceladus, and on Mars.
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Affiliation(s)
- Anna L Butterworth
- Space Sciences laboratory, University of California Berkeley, Berkeley, CA 94720, USA.
| | - Matin Golozar
- Chemistry Department, University of California, Berkeley, CA 94720, USA
- Department of Mechanical Engineering, University of Utah, Salt Lake City, UT 84112, USA.
| | - Zachary Estlack
- Department of Mechanical Engineering, University of Utah, Salt Lake City, UT 84112, USA.
| | - Jeremy McCauley
- Space Sciences laboratory, University of California Berkeley, Berkeley, CA 94720, USA.
| | - Richard A Mathies
- Space Sciences laboratory, University of California Berkeley, Berkeley, CA 94720, USA.
- Chemistry Department, University of California, Berkeley, CA 94720, USA
| | - Jungkyu Kim
- Department of Mechanical Engineering, University of Utah, Salt Lake City, UT 84112, USA.
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Gammoh O, Aljabali AAA, Tambuwala MM. Plasma amino acids in major depressive disorder: between pathology to pharmacology. EXCLI JOURNAL 2024; 23:62-78. [PMID: 38357097 PMCID: PMC10864705 DOI: 10.17179/excli2023-6767] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Figures] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Accepted: 11/23/2023] [Indexed: 02/16/2024]
Abstract
Addressing the formidable challenge posed by the development of effective and personalized interventions for major depressive disorder (MDD) necessitates a comprehensive comprehension of the intricate role that plasma amino acids play and their implications in MDD pathology and pharmacology. Amino acids, owing to their indispensable functions in neurotransmission, metabolism, and immune regulation, emerge as pivotal entities in this intricate disorder. Our primary objective entails unraveling the underlying mechanisms and unveiling tailored treatments through a meticulous investigation into the interplay between plasma amino acids, MDD, and pharmacological strategies. By conducting a thorough and exhaustive review of the existing literature, we have identified pertinent studies on plasma amino acids in MDD, thereby uncovering noteworthy disturbances in the profiles of amino acids among individuals afflicted by MDD when compared to their healthy counterparts. Specifically, disruptions in the metabolism of tryptophan, phenylalanine, and tyrosine, which serve as precursors to essential neurotransmitters, have emerged as prospective biomarkers and critical contributors to the pathophysiology of depression. Amnio acids play an essential role in MDD and could represent an attractive pharmacological target, more studies are further required to fully reveal their underlying mechanisms.
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Affiliation(s)
- Omar Gammoh
- Department of Clinical Pharmacy and Pharmacy Practice; Faculty of Pharmacy, Yarmouk University Irbid 21163, PO BOX 566, Jordan
| | - Alaa A. A. Aljabali
- Department of Pharmaceutics and Pharmaceutical Technology; Faculty of Pharmacy, Yarmouk University Irbid 21163, PO BOX 566, Jordan
| | - Murtaza M. Tambuwala
- Lincoln Medical School, University of Lincoln, Brayford Pool Campus, Lincoln LN6 7TS, United Kingdom
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4
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Bonaccorsi R, Glass B, Moreno-Paz M, García-Villadangos M, Warren-Rhodes K, Parro V, Manchado JM, Wilhelm MB, McKay CP. In Situ Real-Time Monitoring for Aseptic Drilling: Lessons Learned from the Atacama Rover Astrobiology Drilling Studies Contamination Control Strategy and Implementation and Application to the Icebreaker Mars Life Detection Mission. ASTROBIOLOGY 2023; 23:1303-1336. [PMID: 38133823 DOI: 10.1089/ast.2022.0133] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2023]
Abstract
In 2019, the Atacama Rover Astrobiology Drilling Studies (ARADS) project field-tested an autonomous rover-mounted robotic drill prototype for a 6-Sol life detection mission to Mars (Icebreaker). ARADS drilled Mars-like materials in the Atacama Desert (Chile), one of the most life-diminished regions on Earth, where mitigating contamination transfer into life-detection instruments becomes critical. Our Contamination Control Strategy and Implementation (CCSI) for the Sample Handling and Transfer System (SHTS) hardware (drill, scoop and funnels) included out-of-simulation protocol testing (out-of-sim) for hardware decontamination and verification during the 6-Sol simulation (in-sim). The most effective five-step decontamination combined safer-to-use sterilants (3%_hydrogen-peroxide-activated 5%_sodium-hypochlorite), and in situ real-time verification by adenosine triphosphate (ATP) and Signs of Life Detector (SOLID) Fluorescence Immunoassay for characterization hardware bioburden and airborne contaminants. The 20- to 40-min protocol enabled a 4-log bioburden reduction down to <0.1 fmoles ATP detection limit (funnels and drill) to 0.2-0.7 fmoles (scoop) of total ATP. The (post-cleaning) hardware background was 0.3 to 1-2 attomoles ATP/cm2 (cleanliness benchmark background values) equivalent to ca. 1-10 colony forming unit (CFU)/cm2. Further, 60-100% of the in-sim hardware background was ≤3-4 bacterial cells/cm2, the threshold limit for Class <7 aseptic operations. Across the six Sols, the flux of airborne contaminants to the drill sites was ∼5 and ∼22 amoles ATP/(cm2·day), accounting for an unexpectedly high Fluorescence Intensity (FI) signal (FI: ∼6000) against aquatic cyanobacteria, but negligible anthropogenic contribution. The SOLID immunoassay also detected microorganisms from multiple habitats across the Atacama Desert (anoxic, alkaline/acidic microenvironments in halite fields, playas, and alluvial fans) in both airborne and post-cleaning hardware background. Finally, the hardware ATP background was 40-250 times lower than the ATP in cores. Similarly, the FI peaks (FImax) against the microbial taxa and molecular biomarkers detected in the post-cleaned hardware (FI: ∼1500-1600) were 5-10 times lower than biomarkers in drilled sediments, excluding significant interference with putative biomarker found in cores. Similar protocols enable the acquisition of contamination-free materials for ultra-sensitive instruments analysis and the integrity of scientific results. Their application can augment our scientific knowledge of the distribution of cryptic life on Mars-like grounds and support life-detection robotic and human-operated missions to Mars.
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Affiliation(s)
- Rosalba Bonaccorsi
- SETI Institute, Mountain View, California, USA
- NASA Ames Research Center, Moffett Field, California, USA
| | - Brian Glass
- NASA Ames Research Center, Moffett Field, California, USA
| | - Mercedes Moreno-Paz
- Department of Molecular Evolution, Centro de Astrobiología (INTA-CSIC), Madrid, Spain
| | | | - Kimberley Warren-Rhodes
- SETI Institute, Mountain View, California, USA
- NASA Ames Research Center, Moffett Field, California, USA
| | - Victor Parro
- Department of Molecular Evolution, Centro de Astrobiología (INTA-CSIC), Madrid, Spain
| | - Juan Manuel Manchado
- Department of Molecular Evolution, Centro de Astrobiología (INTA-CSIC), Madrid, Spain
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5
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Estlack Z, Golozar M, Butterworth AL, Mathies RA, Kim J. Operation of a programmable microfluidic organic analyzer under microgravity conditions simulating space flight environments. NPJ Microgravity 2023; 9:41. [PMID: 37286631 DOI: 10.1038/s41526-023-00290-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Accepted: 05/25/2023] [Indexed: 06/09/2023] Open
Abstract
A programmable microfluidic organic analyzer was developed for detecting life signatures beyond Earth and clinical monitoring of astronaut health. Extensive environmental tests, including various gravitational environments, are required to confirm the functionality of this analyzer and advance its overall Technology Readiness Level. This work examines how the programmable microfluidic analyzer performed under simulated Lunar, Martian, zero, and hypergravity conditions during a parabolic flight. We confirmed that the functionality of the programmable microfluidic analyzer was minimally affected by the significant changes in the gravitational field, thus paving the way for its use in a variety of space mission opportunities.
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Affiliation(s)
- Zachary Estlack
- Department of Mechanical Engineering, University of Utah, Salt Lake City, UT, 84112, USA
| | - Matin Golozar
- Space Sciences Laboratory, University of California Berkeley, Berkeley, CA, 94720, USA
- Biophysics Graduate Group and Chemistry Department, University of California Berkeley, Berkeley, CA, 94720, USA
| | - Anna L Butterworth
- Space Sciences Laboratory, University of California Berkeley, Berkeley, CA, 94720, USA
| | - Richard A Mathies
- Space Sciences Laboratory, University of California Berkeley, Berkeley, CA, 94720, USA
- Biophysics Graduate Group and Chemistry Department, University of California Berkeley, Berkeley, CA, 94720, USA
| | - Jungkyu Kim
- Department of Mechanical Engineering, University of Utah, Salt Lake City, UT, 84112, USA.
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6
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Ahmad A, Imran M, Ahsan H. Biomarkers as Biomedical Bioindicators: Approaches and Techniques for the Detection, Analysis, and Validation of Novel Biomarkers of Diseases. Pharmaceutics 2023; 15:1630. [PMID: 37376078 DOI: 10.3390/pharmaceutics15061630] [Citation(s) in RCA: 41] [Impact Index Per Article: 20.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Revised: 05/24/2023] [Accepted: 05/29/2023] [Indexed: 06/29/2023] Open
Abstract
A biomarker is any measurable biological moiety that can be assessed and measured as a potential index of either normal or abnormal pathophysiology or pharmacological responses to some treatment regimen. Every tissue in the body has a distinct biomolecular make-up, which is known as its biomarkers, which possess particular features, viz., the levels or activities (the ability of a gene or protein to carry out a particular body function) of a gene, protein, or other biomolecules. A biomarker refers to some feature that can be objectively quantified by various biochemical samples and evaluates the exposure of an organism to normal or pathological procedures or their response to some drug interventions. An in-depth and comprehensive realization of the significance of these biomarkers becomes quite important for the efficient diagnosis of diseases and for providing the appropriate directions in case of multiple drug choices being presently available, which can benefit any patient. Presently, advancements in omics technologies have opened up new possibilities to obtain novel biomarkers of different types, employing genomic strategies, epigenetics, metabolomics, transcriptomics, lipid-based analysis, protein studies, etc. Particular biomarkers for specific diseases, their prognostic capabilities, and responses to therapeutic paradigms have been applied for screening of various normal healthy, as well as diseased, tissue or serum samples, and act as appreciable tools in pharmacology and therapeutics, etc. In this review, we have summarized various biomarker types, their classification, and monitoring and detection methods and strategies. Various analytical techniques and approaches of biomarkers have also been described along with various clinically applicable biomarker sensing techniques which have been developed in the recent past. A section has also been dedicated to the latest trends in the formulation and designing of nanotechnology-based biomarker sensing and detection developments in this field.
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Affiliation(s)
- Anas Ahmad
- Julia McFarlane Diabetes Research Centre (JMDRC), Department of Microbiology, Immunology and Infectious Diseases, Snyder Institute for Chronic Diseases, Hotchkiss Brain Institute, Cumming School of Medicine, Foothills Medical Centre, University of Calgary, Calgary, AB T2N 4N1, Canada
| | - Mohammad Imran
- Therapeutics Research Group, Frazer Institute, Faculty of Medicine, University of Queensland, Brisbane 4102, Australia
| | - Haseeb Ahsan
- Department of Biochemistry, Faculty of Dentistry, Jamia Millia Islamia, New Delhi 110025, India
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7
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Werner EM, Lam BX, Hui EE. Phase-Optimized Peristaltic Pumping by Integrated Microfluidic Logic. MICROMACHINES 2022; 13:1784. [PMID: 36296137 PMCID: PMC9610095 DOI: 10.3390/mi13101784] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Revised: 09/09/2022] [Accepted: 09/12/2022] [Indexed: 06/08/2023]
Abstract
Microfluidic droplet generation typically entails an initial stabilization period on the order of minutes, exhibiting higher variation in droplet volume until the system reaches monodisperse production. The material lost during this period can be problematic when preparing droplets from limited samples such as patient biopsies. Active droplet generation strategies such as antiphase peristaltic pumping effectively reduce stabilization time but have required off-chip control hardware that reduces system accessibility. We present a fully integrated device that employs on-chip pneumatic logic to control phase-optimized peristaltic pumping. Droplet generation stabilizes in about a second, with only one or two non-uniform droplets produced initially.
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Affiliation(s)
| | | | - Elliot E. Hui
- Department of Biomedical Engineering, University of California, Irvine, CA 92697, USA
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8
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Van Volkenburg T, Benzing JS, Craft KL, Ohiri K, Kilhefner A, Irons K, Bradburne C. Microfluidic Chromatography for Enhanced Amino Acid Detection at Ocean Worlds. ASTROBIOLOGY 2022; 22:1116-1128. [PMID: 35984944 PMCID: PMC9508454 DOI: 10.1089/ast.2021.0182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/12/2021] [Accepted: 04/18/2022] [Indexed: 06/15/2023]
Abstract
Increasing interest in the detection of biogenic signatures, such as amino acids, on icy moons and bodies within our solar system has led to the development of compact in situ instruments. Given the expected dilute biosignatures and high salinities of these extreme environments, purification of icy samples before analysis enables increased detection sensitivity. Herein, we outline a novel compact cation exchange method to desalinate proteinogenic amino acids in solution, independent of the type and concentration of salts in the sample. Using a modular microfluidic device, initial experiments explored operational limits of binding capacity with phenylalanine and three model cations, Na+, Mg2+, and Ca2+. Phenylalanine recovery (94-17%) with reduced conductivity (30-200 times) was seen at high salt-to-amino-acid ratios between 25:1 and 500:1. Later experiments tested competition between mixtures of 17 amino acids and other chemistries present in a terrestrial ocean sample. Recoveries ranged from 11% to 85% depending on side chain chemistry and cation competition, with concentration shown for select high affinity amino acids. This work outlines a nondestructive amino acid purification device capable of coupling to multiple downstream analytical techniques for improved characterization of icy samples at remote ocean worlds.
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Affiliation(s)
| | | | - Kathleen L. Craft
- Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, USA
| | - Korine Ohiri
- Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, USA
| | - Ashley Kilhefner
- Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, USA
| | - Kristen Irons
- University of North Carolina at Chapel Hill College of Arts and Sciences, Chapel Hill, North Carolina, USA
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9
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Kochetkov KA, Bystrova NA, Pavlov PA, Oshchepkov MS, Oshchepkov AS. Microfluidic Asymmetrical Synthesis and Chiral Analysis. J IND ENG CHEM 2022. [DOI: 10.1016/j.jiec.2022.08.025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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10
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Mora MF, Kok MGM, Noell A, Willis PA. Detection of Biosignatures by Capillary Electrophoresis Mass Spectrometry in the Presence of Salts Relevant to Ocean Worlds Missions. ASTROBIOLOGY 2022; 22:914-925. [PMID: 35913998 DOI: 10.1089/ast.2021.0091] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Capillary electrophoresis (CE) is a promising liquid-based technique for in situ chemical analysis on ocean worlds that allows the detection of a wide range of organic molecules relevant to the search for life. CE coupled with mass spectrometry (MS) is particularly valuable as it also enables the discovery of unknown compounds. Here we demonstrate that CE coupled to MS via electrospray ionization (ESI) can readily analyze samples containing up to half the saturation levels of salts relevant to ocean worlds when using 5 M acetic acid as the separation media. A mixture containing amino acids, peptides, nucleobases, and nucleosides was analyzed in the presence of two salts, NaCl and MgSO4, based on their relevance to Europa and Enceladus. We demonstrate here CE-MS limits of detection for these organics ranging from 0.05 to 1 μM (8 to 89 ppb) in the absence of salts. More importantly, we demonstrate here for the first time that organics in the low micromolar range (1-50 μM) are detected by CE-MS in the presence of 3 M NaCl without desalting, preconcentration, or derivatization. This demonstration highlights how CE-MS is uniquely suited for organic analysis on future missions to ocean worlds.
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Affiliation(s)
- Maria F Mora
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Miranda G M Kok
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Aaron Noell
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Peter A Willis
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
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11
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Enya K, Yamagishi A, Kobayashi K, Yoshimura Y. Comparative study of methods for detecting extraterrestrial life in exploration mission of Mars and the solar system. LIFE SCIENCES IN SPACE RESEARCH 2022; 34:53-67. [PMID: 35940690 DOI: 10.1016/j.lssr.2022.07.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 06/16/2022] [Accepted: 07/07/2022] [Indexed: 06/15/2023]
Abstract
The detection and analysis of extraterrestrial life are important issues of space science. Mars is among the most important planets to explore for extraterrestrial life, owing both to its physical properties and to its ancient and present environments as revealed by previous exploration missions. In this paper, we present a comparative study of methods for detecting extraterrestrial life and life-related substances. To this end, we have classified and summarized the characteristics targeted for the detection of extraterrestrial life in solar system exploration mission and the methods used to evaluate them. A summary table is presented. We conclude that at this moment (i) there is no realistic single detection method capable of concluding the discovery of extraterrestrial life, (ii) no single method has an advantage over the others in all respects, and (iii) there is no single method capable of distinguishing extraterrestrial life from terrestrial life. Therefore, a combination of complementary methods is essential. We emphasize the importance of endeavoring to detect extraterrestrial life without overlooking possible alien life forms, even at the cost of tolerating false positives. Summaries of both the targets and the detection methods should be updated continuously, and comparative studies of both should be pursued. Although this study assumes Mars to be a model site for the primary environment for life searches, both the targets and detection methods described herein will also be useful for searching for extraterrestrial life in any celestial environment and for the initial inspection of returned samples.
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Affiliation(s)
- Keigo Enya
- Institute of Space & Astronautical Science, Japan Aerospace Exploration Agency, 3-1-1 Yoshinodai, Chuou, Sagamihara, Kanagawa 252-5210, Japan.
| | - Akihiko Yamagishi
- School of Life Science, Tokyo University of Pharmacy and Life Science, 1432-1 Horinouchi, Hachioji, Tokyo 192-0392, Japan
| | - Kensei Kobayashi
- Department of Chemistry, Yokohama National University, 79-5 Tokiwadai, Hodogaya, Yokohama 240-8501, Japan
| | - Yoshitaka Yoshimura
- Department of Life Science, Tamagawa University, 6-1-1 Tamagawagakuen, Machida, Tokyo 194-8610, Japan
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12
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Raymond-Bouchard I, Maggiori C, Brennan L, Altshuler I, Manchado JM, Parro V, Whyte LG. Assessment of Automated Nucleic Acid Extraction Systems in Combination with MinION Sequencing As Potential Tools for the Detection of Microbial Biosignatures. ASTROBIOLOGY 2022; 22:87-103. [PMID: 34962136 DOI: 10.1089/ast.2020.2349] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The utilization of nanopore technologies for the detection of organic biogenic compounds has garnered significant focus in recent years. Oxford Nanopore Technologies' (ONT) MinION instrument, which can detect and sequence nucleic acids (NAs), is one such example. These technologies have much promise for unambiguous life detection but require significant development in terms of methods for extraction and preparation of NAs for biosignature detection and their feasibility for use in astrobiology-focused field missions. In this study, we tested pre-existing, automated, or semiautomated NA extraction technologies, coupled with automated ONT VolTRAX NA sample preparation, and verification with Nanopore MinION sequencing. All of the extraction systems tested (SuperFastPrep2, ClaremontX1, and SOLID-Sample Preparation Unit) showed potential for extracting DNA from Canadian High Arctic environments analogous to Mars, Europa, and Enceladus, which could subsequently be detected and sequenced with the MinION. However, they differed with regard to efficacy, yield, purity, and sequencing and annotation quality. Overall, bead beating-based systems performed the best for these parameters. In addition, we showed that the MinION could sequence unpurified DNA contained in crude cell lysates. This is valuable from an astrobiology perspective because purification steps are time-consuming and complicate the requirements for an automated extraction and life detection system. Our results indicate that semiautomated NA extraction and preparation technologies hold much promise, and with increased optimization and automation could be coupled to a larger platform incorporating nanopore detection and sequencing of NAs for life detection applications.
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Affiliation(s)
| | - Catherine Maggiori
- Department of Natural Resource Sciences, McGill University, Quebec, Canada
| | - Laura Brennan
- Department of Natural Resource Sciences, McGill University, Quebec, Canada
| | - Ianina Altshuler
- Department of Natural Resource Sciences, McGill University, Quebec, Canada
| | | | - Victor Parro
- Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Madrid, Spain
| | - Lyle G Whyte
- Department of Natural Resource Sciences, McGill University, Quebec, Canada
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13
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Casto-Boggess LD, Golozar M, Butterworth AL, Mathies RA. Optimization of Fluorescence Labeling of Trace Analytes: Application to Amino Acid Biosignature Detection with Pacific Blue. Anal Chem 2021; 94:1240-1247. [PMID: 34965088 DOI: 10.1021/acs.analchem.1c04465] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Fluorescence labeling of biomolecules and fluorescence detection platforms provide a powerful approach to high-sensitivity bioanalysis. Reactive probes can be chosen to target specific functional groups to enable selective analysis of a chosen class of analytes. Particularly, when targeting trace levels of analytes, it is important to optimize the reaction chemistry to maximize the labeling efficiency and minimize the background. Here, we develop methods to optimize the labeling and detection of Pacific Blue (PB)-tagged amino acids. A model is developed to quantitate labeling kinetics and completeness in the circumstance where analyte labeling and reactive probe hydrolysis are in competition. The rates of PB hydrolysis and amino acid labeling are determined as a function of pH. Labeling kinetics and completeness as a function of PB concentration are found to depend on the ratio of the hydrolysis time to the initial labeling time, which depends on the initial PB concentration. Finally, the optimized labeling and detection conditions are used to perform capillary electrophoresis analysis demonstrating 100 pM sensitivities and high-efficiency separations of an 11 amino acid test set. This work provides a quantitative optimization model that is applicable to a variety of reactive probes and targets. Our approach is particularly useful for the analysis of trace amine and amino acid biosignatures in extraterrestrial samples. For illustration, our optimized conditions (reaction at 4 °C in a pH 8.5 buffer) are used to detect trace amino acid analytes at the 100 pM level in an Antarctic ice core sample.
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Affiliation(s)
- Laura D Casto-Boggess
- Space Sciences Laboratory, University of California Berkeley, Berkeley, California 94720-7450, United States
| | - Matin Golozar
- Chemistry Department and Space Sciences Laboratory, University of California Berkeley, Berkeley, California 94720, United States
| | - Anna L Butterworth
- Space Sciences Laboratory, University of California Berkeley, Berkeley, California 94720-7450, United States
| | - Richard A Mathies
- Chemistry Department and Space Sciences Laboratory, University of California Berkeley, Berkeley, California 94720, United States
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14
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Ha NS, de Raad M, Han LZ, Golini A, Petzold CJ, Northen TR. Faster, better, and cheaper: harnessing microfluidics and mass spectrometry for biotechnology. RSC Chem Biol 2021; 2:1331-1351. [PMID: 34704041 PMCID: PMC8496484 DOI: 10.1039/d1cb00112d] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Accepted: 07/01/2021] [Indexed: 12/14/2022] Open
Abstract
High-throughput screening technologies are widely used for elucidating biological activities. These typically require trade-offs in assay specificity and sensitivity to achieve higher throughput. Microfluidic approaches enable rapid manipulation of small volumes and have found a wide range of applications in biotechnology providing improved control of reaction conditions, faster assays, and reduced reagent consumption. The integration of mass spectrometry with microfluidics has the potential to create high-throughput, sensitivity, and specificity assays. This review introduces the widely-used mass spectrometry ionization techniques that have been successfully integrated with microfluidics approaches such as continuous-flow system, microchip electrophoresis, droplet microfluidics, digital microfluidics, centrifugal microfluidics, and paper microfluidics. In addition, we discuss recent applications of microfluidics integrated with mass spectrometry in single-cell analysis, compound screening, and the study of microorganisms. Lastly, we provide future outlooks towards online coupling, improving the sensitivity and integration of multi-omics into a single platform.
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Affiliation(s)
- Noel S Ha
- Biological Systems and Engineering, Lawrence Berkeley National Laboratory Berkeley CA USA
- US Department of Energy Joint BioEnergy Institute Emeryville CA USA
| | - Markus de Raad
- Environmental Genomics and Systems Biology, Biosciences, Lawrence Berkeley National Laboratory Berkeley CA USA
| | - La Zhen Han
- Environmental Genomics and Systems Biology, Biosciences, Lawrence Berkeley National Laboratory Berkeley CA USA
- US Department of Energy Joint Genome Institute Berkeley CA USA
| | - Amber Golini
- Environmental Genomics and Systems Biology, Biosciences, Lawrence Berkeley National Laboratory Berkeley CA USA
- US Department of Energy Joint Genome Institute Berkeley CA USA
| | - Christopher J Petzold
- Biological Systems and Engineering, Lawrence Berkeley National Laboratory Berkeley CA USA
- US Department of Energy Joint BioEnergy Institute Emeryville CA USA
| | - Trent R Northen
- Biological Systems and Engineering, Lawrence Berkeley National Laboratory Berkeley CA USA
- US Department of Energy Joint BioEnergy Institute Emeryville CA USA
- Environmental Genomics and Systems Biology, Biosciences, Lawrence Berkeley National Laboratory Berkeley CA USA
- US Department of Energy Joint Genome Institute Berkeley CA USA
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15
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Quantitative evaluation of the feasibility of sampling the ice plumes at Enceladus for biomarkers of extraterrestrial life. Proc Natl Acad Sci U S A 2021; 118:2106197118. [PMID: 34493668 PMCID: PMC8449353 DOI: 10.1073/pnas.2106197118] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Accepted: 08/02/2021] [Indexed: 11/30/2022] Open
Abstract
The search for organic biosignatures indicative of life elsewhere in our solar system is an exciting quest that, if successful, will have a profound impact on our biological uniqueness. Saturn’s icy moon Enceladus is a promising location for a second occurrence of life due to its salty subsurface ocean. Plumes that jet out through the ice surface vents provide an enticing opportunity to sample the underlying ocean for biomarkers. The experiments reported here provide accurate modeling of our ability to fly through these plumes to efficiently and nondestructively gather ice particles for biomolecular analysis. Our measured efficiencies demonstrate that Saturn and/or Enceladus orbital missions will gather sufficient ice to make meaningful measurement of biosignatures in the Enceladus plumes. Enceladus, an icy moon of Saturn, is a compelling destination for a probe seeking biosignatures of extraterrestrial life because its subsurface ocean exhibits significant organic chemistry that is directly accessible by sampling cryovolcanic plumes. State-of-the-art organic chemical analysis instruments can perform valuable science measurements at Enceladus provided they receive sufficient plume material in a fly-by or orbiter plume transit. To explore the feasibility of plume sampling, we performed light gas gun experiments impacting micrometer-sized ice particles containing a fluorescent dye biosignature simulant into a variety of soft metal capture surfaces at velocities from 800 m ⋅ s−1 up to 3 km ⋅ s−1. Quantitative fluorescence microscopy of the capture surfaces demonstrates organic capture efficiencies of up to 80 to 90% for isolated impact craters and of at least 17% on average on indium and aluminum capture surfaces at velocities up to 2.2 km ⋅ s−1. Our results reveal the relationships between impact velocity, particle size, capture surface, and capture efficiency for a variety of possible plume transit scenarios. Combined with sensitive microfluidic chemical analysis instruments, we predict that our capture system can be used to detect organic molecules in Enceladus plume ice at the 1 nM level—a sensitivity thought to be meaningful and informative for probing habitability and biosignatures.
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16
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Twenty years of amino acid determination using capillary electrophoresis: A review. Anal Chim Acta 2021; 1174:338233. [DOI: 10.1016/j.aca.2021.338233] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Revised: 01/14/2021] [Accepted: 01/16/2021] [Indexed: 12/28/2022]
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17
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Wang J, Zhang N, Chen J, Su G, Yao H, Ho TY, Sun L. Predicting the fluid behavior of random microfluidic mixers using convolutional neural networks. LAB ON A CHIP 2021; 21:296-309. [PMID: 33325947 DOI: 10.1039/d0lc01158d] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
With the various applications of microfluidics, numerical simulation is highly recommended to verify its performance and reveal potential defects before fabrication. Among all the simulation parameters and simulation tools, the velocity field and concentration profile are the key parts and are generally simulated using finite element analysis (FEA). In our previous work [Wang et al., Lab Chip, 2016, 21, 4212-4219], automated design of microfluidic mixers by pre-generating a random library with the FEA was proposed. However, the duration of the simulation process is time-consuming, while the matching consistency between limited pre-generated designs and user desire is not stable. To address these issues, we inventively transformed the fluid mechanics problem into an image recognition problem and presented a convolutional neural network (CNN)-based technique to predict the fluid behavior of random microfluidic mixers. The pre-generated 10 513 candidate designs in the random library were used in the training process of the CNN, and then 30 757 brand new microfluidic mixer designs were randomly generated, whose performance was predicted by the CNN. Experimental results showed that the CNN method could complete all the predictions in just 10 seconds, which was around 51 600× faster than the previous FEA method. The CNN library was extended to contain 41 270 candidate designs, which has filled up those empty spaces in the fluid velocity versus solute concentration map of the random library, and able to provide more choices and possibilities for user desire. Besides, the quantitative analysis has confirmed the increased compatibility of the CNN library with user desire. In summary, our CNN method not only presents a much faster way of generating a more complete library with candidate mixer designs but also provides a solution for predicting fluid behavior using a machine learning technique.
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Affiliation(s)
- Junchao Wang
- Key Laboratory of RF Circuits and Systems, Ministry of Education, and, Zhejiang Provincial Laboratory of Integrated Circuit Design, Hangzhou Dianzi University, China.
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18
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Fukuba T, Fujii T. Lab-on-a-chip technology for in situ combined observations in oceanography. LAB ON A CHIP 2021; 21:55-74. [PMID: 33300537 DOI: 10.1039/d0lc00871k] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The oceans sustain the global environment and diverse ecosystems through a variety of biogeochemical processes and their complex interactions. In order to understand the dynamism of the local or global marine environments, multimodal combined observations must be carried out in situ. On the other hand, instrumentation of in situ measurement techniques enabling biological and/or biochemical combined observations is challenging in aquatic environments, including the ocean, because biochemical flow analyses require a more complex configuration than physicochemical electrode sensors. Despite this technical hurdle, in situ analyzers have been developed to measure the concentrations of seawater contents such as nutrients, trace metals, and biological components. These technologies have been used for cutting-edge ocean observations to elucidate the biogeochemical properties of water mass with a high spatiotemporal resolution. In this context, the contribution of lab-on-a-chip (LoC) technology toward the miniaturization and functional integration of in situ analyzers has been gaining momentum. Due to their mountability, in situ LoC technologies provide ideal instrumentation for underwater analyzers, especially for miniaturized underwater observation platforms. Consequently, the appropriate combination of reliable LoC and underwater technologies is essential to realize practical in situ LoC analyzers suitable for underwater environments, including the deep sea. Moreover, the development of fundamental LoC technologies for underwater analyzers, which operate stably in extreme environments, should also contribute to in situ measurements for public or industrial purposes in harsh environments as well as the exploration of the extraterrestrial frontier.
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Affiliation(s)
- Tatsuhiro Fukuba
- Institute for Marine-Earth Exploration and Engineering, Japan Agency for Marine-Earth Science and Technology, Natsushima-cho 2-15, Yokosuka, Kanagawa 237-0061, Japan.
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19
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Duca ZA, Speller NC, Cantrell T, Stockton AM. A modular, easy-to-use microcapillary electrophoresis system with laser-induced fluorescence for quantitative compositional analysis of trace organic molecules. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2020; 91:104101. [PMID: 33138565 DOI: 10.1063/5.0008734] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Accepted: 09/14/2020] [Indexed: 06/11/2023]
Abstract
Microcapillary electrophoresis (μCE) enables high-resolution separations in miniaturized, automated microfluidic devices. Pairing this powerful separation technique with laser-induced fluorescence (LIF) enables a highly sensitive, quantitative, and compositional analysis of organic molecule monomers and short polymers, which are essential, ubiquitous components of life on Earth. Improving methods for their detection has applications to multiple scientific fields, particularly those related to medicine, industry, and space science. Here, a modular benchtop system using μCE with LIF detection was constructed and tested by analyzing standard amino acid samples of valine, serine, alanine, glycine, glutamic acid, and aspartic acid in multiple borate buffered solutions of increasing concentrations from 10 mM to 50 mM, all pH 9.5. The 35 mM borate buffer solution generated the highest resolution before Joule heating dominated. The limits of detection of alanine and glycine using 35 mM borate buffer were found to be 2.12 nM and 2.91 nM, respectively, comparable to other state-of-the-art μCE-LIF instruments. This benchtop system is amenable to a variety of detectors, including a photomultiplier tube, a silicon photomultiplier, or a spectrometer, and currently employs a spectrometer for facile multi-wavelength detection. Furthermore, the microdevice is easily exchanged to fit the desired application of the system, and optical components within the central filter cube can be easily replaced to target alternative fluorescent dyes. This work represents a significant step forward for the analysis of small organic molecules and biopolymers using μCE-LIF systems.
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Affiliation(s)
- Zachary A Duca
- Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | | | - Thomas Cantrell
- Georgia Institute of Technology, Atlanta, Georgia 30332, USA
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20
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Golozar M, Chu WK, Casto LD, McCauley J, Butterworth AL, Mathies RA. Fabrication of high-quality glass microfluidic devices for bioanalytical and space flight applications. MethodsX 2020; 7:101043. [PMID: 32995307 PMCID: PMC7502335 DOI: 10.1016/j.mex.2020.101043] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Accepted: 08/22/2020] [Indexed: 01/14/2023] Open
Abstract
Microfabricated glass microfluidic and Capillary Electrophoresis (CE) devices have been utilized in a wide variety of applications over the past thirty years. At the Berkeley Space Sciences Laboratory, we are working to further expand this technology by developing analytical instruments to chemically explore our solar system. This effort requires improving the quality and reliability of glass microfabrication through quality control procedures at every stage of design and manufacture. This manuscript provides detailed information on microfabrication technology for the production of high-quality glass microfluidic chips in compliance with industrial standards and space flight instrumentation quality control.The methodological protocol provided in this paper includes the scope of each step of the manufacturing process, materials and technologies recommended and the specific challenges that often confront the process developer. Types and sources of fabrication error at every stage have been identified and their solutions have been proposed and verified. We present robust and rigorous manufacturing and quality control procedures that will assist other researchers in achieving the highest possible quality glass microdevices using the latest apparatus in a routine and reliable fashion.
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Affiliation(s)
- Matin Golozar
- Department of Chemistry and Biophysics Graduate Group, University of California, Berkeley, CA 94720, United States
- Space Sciences Laboratory, University of California, 7 Gauss Way, Berkeley, CA 94720, United States
- Corresponding author at: Department of Chemistry and Biophysics Graduate Group, University of California, Berkeley, CA 94720, United States.
| | - Wai K. Chu
- Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, United States
| | - Laura D. Casto
- Space Sciences Laboratory, University of California, 7 Gauss Way, Berkeley, CA 94720, United States
| | - Jeremy McCauley
- Space Sciences Laboratory, University of California, 7 Gauss Way, Berkeley, CA 94720, United States
| | - Anna L. Butterworth
- Space Sciences Laboratory, University of California, 7 Gauss Way, Berkeley, CA 94720, United States
| | - Richard A. Mathies
- Department of Chemistry and Biophysics Graduate Group, University of California, Berkeley, CA 94720, United States
- Space Sciences Laboratory, University of California, 7 Gauss Way, Berkeley, CA 94720, United States
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21
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Mora MF, Kehl F, Tavares da Costa E, Bramall N, Willis PA. Fully Automated Microchip Electrophoresis Analyzer for Potential Life Detection Missions. Anal Chem 2020; 92:12959-12966. [DOI: 10.1021/acs.analchem.0c01628] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Maria F. Mora
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California 91109, United States
| | - Florian Kehl
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California 91109, United States
| | - Eric Tavares da Costa
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California 91109, United States
| | - Nathan Bramall
- Leiden Measurement Technology LLC, 1230 Mountain View-Alviso Road Suite A, Sunnyvale, California 94089, United States
| | - Peter A. Willis
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California 91109, United States
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22
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Aerts JW, Riedo A, Melton DJ, Martini S, Flahaut J, Meierhenrich UJ, Meinert C, Myrgorodska I, Lindner R, Ehrenfreund P. Biosignature Analysis of Mars Soil Analogs from the Atacama Desert: Challenges and Implications for Future Missions to Mars. ASTROBIOLOGY 2020; 20:766-784. [PMID: 32167834 DOI: 10.1089/ast.2019.2063] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
The detection of biosignatures on Mars is of outstanding interest in the current field of astrobiology and drives various fields of research, ranging from new sample collection strategies to the development of more sensitive detection techniques. Detailed analysis of the organic content in Mars analog materials collected from extreme environments on Earth improves the current understanding of biosignature preservation and detection under conditions similar to those of Mars. In this article, we examined the biological fingerprint of several locations in the Atacama Desert (Chile), which include different wet and dry, and intermediate to high elevation salt flats (also named salars). Liquid chromatography and multidimensional gas chromatography mass spectrometry measurement techniques were used for the detection and analysis of amino acids extracted from the salt crusts and sediments by using sophisticated extraction procedures. Illumina 16S amplicon sequencing was used for the identification of microbial communities associated with the different sample locations. Although amino acid load and organic carbon and nitrogen quantities were generally low, it was found that most of the samples harbored complex and versatile microbial communities, which were dominated by (extremely) halophilic microorganisms (most notably by species of the Archaeal family Halobacteriaceae). The dominance of salts (i.e., halites and sulfates) in the investigated samples leaves its mark on the composition of the microbial communities but does not appear to hinder the potential of life to flourish since it can clearly adapt to the higher concentrations. Although the Atacama Desert is one of the driest and harshest environments on Earth, it is shown that there are still sub-locations where life is able to maintain a foothold, and, as such, salt flats could be considered as interesting targets for future life exploration missions on Mars.
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Affiliation(s)
- Joost W Aerts
- Molecular Cell Biology, Faculty of Science, VU University Amsterdam, Amsterdam, The Netherlands
| | - Andreas Riedo
- Astrobiology Laboratory, Sackler Laboratory for Astrophysics, Leiden Observatory, Leiden University, Leiden, The Netherlands
| | - Daniel J Melton
- Astrobiology Laboratory, Sackler Laboratory for Astrophysics, Leiden Observatory, Leiden University, Leiden, The Netherlands
| | - Simone Martini
- Astrobiology Laboratory, Sackler Laboratory for Astrophysics, Leiden Observatory, Leiden University, Leiden, The Netherlands
| | - Jessica Flahaut
- CRPG, CNRS/University of Lorraine, Vandoeuvre-les-Nancy, France
| | - Uwe J Meierhenrich
- CNRS, Institut de Chimie de Nice UMR 7272, Université Côte d'Azur, Nice, France
| | - Cornelia Meinert
- CNRS, Institut de Chimie de Nice UMR 7272, Université Côte d'Azur, Nice, France
| | | | - Robert Lindner
- Life Support and Physical Sciences Instrumentation Section, European Space Agency, ESTEC, Noordwijk, The Netherlands
| | - Pascale Ehrenfreund
- Astrobiology Laboratory, Sackler Laboratory for Astrophysics, Leiden Observatory, Leiden University, Leiden, The Netherlands
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23
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Rodriguez-Mateos P, Azevedo NF, Almeida C, Pamme N. FISH and chips: a review of microfluidic platforms for FISH analysis. Med Microbiol Immunol 2020; 209:373-391. [PMID: 31965296 PMCID: PMC7248050 DOI: 10.1007/s00430-019-00654-1] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2019] [Accepted: 12/19/2019] [Indexed: 12/12/2022]
Abstract
Fluorescence in situ hybridization (FISH) allows visualization of specific nucleic acid sequences within an intact cell or a tissue section. It is based on molecular recognition between a fluorescently labeled probe that penetrates the cell membrane of a fixed but intact sample and hybridizes to a nucleic acid sequence of interest within the cell, rendering a measurable signal. FISH has been applied to, for example, gene mapping, diagnosis of chromosomal aberrations and identification of pathogens in complex samples as well as detailed studies of cellular structure and function. However, FISH protocols are complex, they comprise of many fixation, incubation and washing steps involving a range of solvents and temperatures and are, thus, generally time consuming and labor intensive. The complexity of the process, the relatively high-priced fluorescent probes and the fairly high-end microscopy needed for readout render the whole process costly and have limited wider uptake of this powerful technique. In recent years, there have been attempts to transfer FISH assay protocols onto microfluidic lab-on-a-chip platforms, which reduces the required amount of sample and reagents, shortens incubation times and, thus, time to complete the protocol, and finally has the potential for automating the process. Here, we review the wide variety of approaches for lab-on-chip-based FISH that have been demonstrated at proof-of-concept stage, ranging from FISH analysis of immobilized cell layers, and cells trapped in arrays, to FISH on tissue slices. Some researchers have aimed to develop simple devices that interface with existing equipment and workflows, whilst others have aimed to integrate the entire FISH protocol into a fully autonomous FISH on-chip system. Whilst the technical possibilities for FISH on-chip are clearly demonstrated, only a small number of approaches have so far been converted into off-the-shelf products for wider use beyond the research laboratory.
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Affiliation(s)
- Pablo Rodriguez-Mateos
- Department of Chemistry and Biochemistry, University of Hull, Cottingham Road, Hull, HU6 7RX, UK
| | - Nuno Filipe Azevedo
- LEPABE-Laboratory for Process Engineering, Environment, Biotechnology and Energy, Department of Chemical Engineering, Faculty of Engineering of University of Porto, Rua Dr. Roberto Frias, s/n, 4200-465, Porto, Portugal
- Biomode SA, Av. Mestre José Veiga, 4715-330, Braga, Portugal
| | - Carina Almeida
- Biomode SA, Av. Mestre José Veiga, 4715-330, Braga, Portugal
- INIAV, I.P.-National Institute for Agricultural and Veterinary Research, Rua dos Lagidos, Lugar da Madalena, Vairão, 4485-655, Vila Do Conde, Portugal
- CEB-Centre of Biological Engineering, University of Minho, 4710-057, Braga, Portugal
| | - Nicole Pamme
- Department of Chemistry and Biochemistry, University of Hull, Cottingham Road, Hull, HU6 7RX, UK.
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24
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New JS, Mathies RA, Price MC, Cole MJ, Golozar M, Spathis V, Burchell MJ, Butterworth AL. Characterizing organic particle impacts on inert metal surfaces: Foundations for capturing organic molecules during hypervelocity transits of Enceladus plumes. METEORITICS & PLANETARY SCIENCE 2020; 55:465-479. [PMID: 32362737 PMCID: PMC7188319 DOI: 10.1111/maps.13448] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Accepted: 01/08/2020] [Indexed: 05/23/2023]
Abstract
The presence and accessibility of a sub-ice-surface saline ocean at Enceladus, together with geothermal activity and a rocky core, make it a compelling location to conduct further, in-depth, astrobiological investigations to probe for organic molecules indicative of extraterrestrial life. Cryovolcanic plumes in the south polar region of Enceladus enable the use of remote in situ sampling and analysis techniques. However, efficient plume sampling and the transportation of captured organic materials to an organic analyzer present unique challenges for an Enceladus mission. A systematic study, accelerating organic ice-particle simulants into soft inert metal targets at velocities ranging 0.5-3.0 km s-1, was carried out using a light gas gun to explore the efficacy of a plume capture instrument. Capture efficiency varied for different metal targets as a function of impact velocity and particle size. Importantly, organic chemical compounds remained chemically intact in particles captured at speeds up to ~2 km s-1. Calibration plots relating the velocity, crater, and particle diameter were established to facilitate future ice-particle impact experiments where the size of individual ice particles is unknown.
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Affiliation(s)
- J. S. New
- Space Sciences LaboratoryUniversity of CaliforniaBerkeley7 Gauss WayBerkeleyCalifornia94720USA
- School of Physical SciencesUniversity of KentCanterburyKentCT2 7NHUK
| | - R. A. Mathies
- Space Sciences LaboratoryUniversity of CaliforniaBerkeley7 Gauss WayBerkeleyCalifornia94720USA
- Department of ChemistryUniversity of CaliforniaBerkeleyCalifornia94720USA
| | - M. C. Price
- School of Physical SciencesUniversity of KentCanterburyKentCT2 7NHUK
| | - M. J. Cole
- School of Physical SciencesUniversity of KentCanterburyKentCT2 7NHUK
| | - M. Golozar
- Space Sciences LaboratoryUniversity of CaliforniaBerkeley7 Gauss WayBerkeleyCalifornia94720USA
- Department of ChemistryUniversity of CaliforniaBerkeleyCalifornia94720USA
| | - V. Spathis
- School of Physical SciencesUniversity of KentCanterburyKentCT2 7NHUK
| | - M. J. Burchell
- School of Physical SciencesUniversity of KentCanterburyKentCT2 7NHUK
| | - A. L. Butterworth
- Space Sciences LaboratoryUniversity of CaliforniaBerkeley7 Gauss WayBerkeleyCalifornia94720USA
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25
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Jones J, Ha NS, Barajas AG, Chatziioannou AF, van Dam RM. Integration of High-Resolution Radiation Detector for Hybrid Microchip Electrophoresis. Anal Chem 2020; 92:3483-3491. [PMID: 31986878 PMCID: PMC7410349 DOI: 10.1021/acs.analchem.9b04827] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
For decades, there has been immense progress in miniaturizing analytical methods based on electrophoresis to improve sensitivity and to reduce sample volumes, separation times, and/or equipment cost and space requirements, in applications ranging from analysis of biological samples to environmental analysis to forensics. In the field of radiochemistry, where radiation-shielded laboratory space is limited, there has been great interest in harnessing the compactness, high efficiency, and speed of microfluidics to synthesize short-lived radiolabeled compounds. We recently proposed that analysis of these compounds could also benefit from miniaturization and have been investigating capillary electrophoresis (CE) and hybrid microchip electrophoresis (hybrid-MCE) as alternatives to the typically used high-performance liquid chromatography (HPLC). We previously showed separation of the positron-emission tomography (PET) imaging tracer 3'-deoxy-3'-fluorothymidine (FLT) from its impurities in a hybrid-MCE device with UV detection, with similar separation performance to HPLC, but with improved speed and lower sample volumes. In this paper, we have developed an integrated radiation detector to enable measurement of the emitted radiation from radiolabeled compounds. Though conventional radiation detectors have been incorporated into CE systems in the past, these approaches cannot be readily integrated into a compact hybrid-MCE device. We instead employed a solid-state avalanche photodiode (APD)-based detector for real-time, high-sensitivity β particle detection. The integrated system can reliably separate [18F]FLT from its impurities and perform chemical identification via coinjection with nonradioactive reference standard. This system can quantitate samples with radioactivity concentrations as low as 114 MBq/mL (3.1 mCi/mL), which is sufficient for analysis of radiochemical purity of radiopharmaceuticals.
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Affiliation(s)
- Jason Jones
- Crump Institute for Molecular Imaging and Department of
Molecular and Medical Pharmacology, David Geffen School of Medicine, University of
California Los Angeles, Los Angeles, CA 90095, USA
- Physics & Biology in Medicine Interdepartmental
Graduate Program, David Geffen School of Medicine, University of California Los
Angeles, Los Angeles, CA 90095, USA
| | - Noel S. Ha
- Crump Institute for Molecular Imaging and Department of
Molecular and Medical Pharmacology, David Geffen School of Medicine, University of
California Los Angeles, Los Angeles, CA 90095, USA
- Department of Bioengineering, Henry Samueli School of
Engineering and Applied Science, University of California Los Angeles, Los Angeles,
CA 90095, USA
| | - Alec G. Barajas
- Crump Institute for Molecular Imaging and Department of
Molecular and Medical Pharmacology, David Geffen School of Medicine, University of
California Los Angeles, Los Angeles, CA 90095, USA
- Department of Chemistry & Biochemistry, University of
California Los Angeles, Los Angeles, CA 90095, USA
| | - Arion F. Chatziioannou
- Crump Institute for Molecular Imaging and Department of
Molecular and Medical Pharmacology, David Geffen School of Medicine, University of
California Los Angeles, Los Angeles, CA 90095, USA
- Physics & Biology in Medicine Interdepartmental
Graduate Program, David Geffen School of Medicine, University of California Los
Angeles, Los Angeles, CA 90095, USA
- Department of Molecular & Medical Pharmacology,
University of California Los Angeles, Los Angeles, CA 90095, USA
| | - R. Michael van Dam
- Crump Institute for Molecular Imaging and Department of
Molecular and Medical Pharmacology, David Geffen School of Medicine, University of
California Los Angeles, Los Angeles, CA 90095, USA
- Physics & Biology in Medicine Interdepartmental
Graduate Program, David Geffen School of Medicine, University of California Los
Angeles, Los Angeles, CA 90095, USA
- Department of Bioengineering, Henry Samueli School of
Engineering and Applied Science, University of California Los Angeles, Los Angeles,
CA 90095, USA
- Department of Molecular & Medical Pharmacology,
University of California Los Angeles, Los Angeles, CA 90095, USA
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26
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Xie X, Maharjan S, Liu S, Zhang YS, Livermore C. A Modular, Reconfigurable Microfabricated Assembly Platform for Microfluidic Transport and Multitype Cell Culture and Drug Testing. MICROMACHINES 2019; 11:E2. [PMID: 31861298 PMCID: PMC7020019 DOI: 10.3390/mi11010002] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Accepted: 12/11/2019] [Indexed: 02/05/2023]
Abstract
Modular microfluidics offer the opportunity to combine the precise fluid control, rapid sample processing, low sample and reagent volumes, and relatively lower cost of conventional microfluidics with the flexible reconfigurability needed to accommodate the requirements of target applications such as drug toxicity studies. However, combining the capabilities of fully adaptable modular microelectromechanical systems (MEMS) assembly with the simplicity of conventional microfluidic fabrication remains a challenge. A hybrid polydimethylsiloxane (PDMS)-molding/photolithographic process is demonstrated to rapidly fabricate LEGO®-like modular blocks. The blocks are created with different sizes that interlock via tongue-and-groove joints in the plane and stack via interference fits out of the plane. These miniature strong but reversible connections have a measured resistance to in-plane and out-of-plane forces of up to >6000× and >1000× the weight of the block itself, respectively. The LEGO®-like interference fits enable O-ring-free microfluidic connections that withstand internal fluid pressures of >120 kPa. A single layer of blocks is assembled into LEGO®-like cell culture plates, where the in vitro biocompatibility and drug toxicity to lung epithelial adenocarcinoma cells and hepatocellular carcinoma cells cultured in the modular microwells are measured. A double-layer block structure is then assembled so that a microchannel formed at the interface between layers connects two microwells. Breast tumor cells and hepatocytes cultured in the coupled wells demonstrate interwell migration as well as the simultaneous effects of a single drug on the two cell types.
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Affiliation(s)
- Xin Xie
- Department of Mechanical and Industrial Engineering, Northeastern University, Boston, MA 02115, USA;
- Division of Engineering in Medicine, Brigham and Women’s Hospital, Department of Medicine, Harvard Medical School, Cambridge, MA 02139, USA;
| | - Sushila Maharjan
- Division of Engineering in Medicine, Brigham and Women’s Hospital, Department of Medicine, Harvard Medical School, Cambridge, MA 02139, USA;
- Research Institute for Bioscience and Biotechnology, Nakkhu-4, Lalitpur 44600, Nepal
| | - Sanwei Liu
- MEMS Sensors and Actuators Laboratory, Institute for Systems Research, University of Maryland, College Park, MD 20742, USA;
| | - Yu Shrike Zhang
- Division of Engineering in Medicine, Brigham and Women’s Hospital, Department of Medicine, Harvard Medical School, Cambridge, MA 02139, USA;
| | - Carol Livermore
- Department of Mechanical and Industrial Engineering, Northeastern University, Boston, MA 02115, USA;
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Ribette T, Leroux B, Eddhif B, Allavena A, David M, Sternberg R, Poinot P, Geffroy-Rodier C. Primary Step Towards In Situ Detection of Chemical Biomarkers in the UNIVERSE via Liquid-Based Analytical System: Development of an Automated Online Trapping/Liquid Chromatography System. Molecules 2019; 24:molecules24071429. [PMID: 30978982 PMCID: PMC6480246 DOI: 10.3390/molecules24071429] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2019] [Revised: 04/04/2019] [Accepted: 04/08/2019] [Indexed: 11/16/2022] Open
Abstract
The search for biomarkers in our solar system is a fundamental challenge for the space research community. It encompasses major difficulties linked to their very low concentration levels, their ambiguous origins (biotic or abiotic), as well as their diversity and complexity. Even if, in 40 years’ time, great improvements in sample pre-treatment, chromatographic separation and mass spectrometry detection have been achieved, there is still a need for new in situ scientific instrumentation. This work presents an original liquid chromatographic system with a trapping unit dedicated to the one-pot detection of a large set of non-volatile extra-terrestrial compounds. It is composed of two units, monitored by a single pump. The first unit is an online trapping unit able to trap polar, apolar, monomeric and polymeric organics. The second unit is an online analytical unit with a high-resolution Q-Orbitrap mass spectrometer. The designed single pump system was as efficient as a laboratory dual-trap LC system for the analysis of amino acids, nucleobases and oligopeptides. The overall setup significantly improves sensitivity, providing limits of detection ranging from ppb to ppt levels, thus meeting with in situ enquiries.
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Affiliation(s)
- Thomas Ribette
- Institut de Chimie des Milieux et Matériaux de Poitiers (IC2MP), Université de Poitiers, UMR CNRS 7285, Equipe Eau Géochimie Santé, 4 rue Michel Brunet, 86076 Poitiers, France.
| | - Bertrand Leroux
- Institut de Chimie des Milieux et Matériaux de Poitiers (IC2MP), Université de Poitiers, UMR CNRS 7285, Equipe Eau Géochimie Santé, 4 rue Michel Brunet, 86076 Poitiers, France.
| | - Balkis Eddhif
- Institut de Chimie des Milieux et Matériaux de Poitiers (IC2MP), Université de Poitiers, UMR CNRS 7285, Equipe Eau Géochimie Santé, 4 rue Michel Brunet, 86076 Poitiers, France.
| | - Audrey Allavena
- Institut de Chimie des Milieux et Matériaux de Poitiers (IC2MP), Université de Poitiers, UMR CNRS 7285, Equipe Eau Géochimie Santé, 4 rue Michel Brunet, 86076 Poitiers, France.
| | - Marc David
- Laboratoire Interuniversitaire des Systèmes Atmosphériques (LISA), Université Paris Est Creteil, UMR CNRS 7583, 61 avenue du General de Gaulle, 94010 Créteil, France.
| | - Robert Sternberg
- Laboratoire Interuniversitaire des Systèmes Atmosphériques (LISA), Université Paris Est Creteil, UMR CNRS 7583, 61 avenue du General de Gaulle, 94010 Créteil, France.
| | - Pauline Poinot
- Institut de Chimie des Milieux et Matériaux de Poitiers (IC2MP), Université de Poitiers, UMR CNRS 7285, Equipe Eau Géochimie Santé, 4 rue Michel Brunet, 86076 Poitiers, France.
| | - Claude Geffroy-Rodier
- Institut de Chimie des Milieux et Matériaux de Poitiers (IC2MP), Université de Poitiers, UMR CNRS 7285, Equipe Eau Géochimie Santé, 4 rue Michel Brunet, 86076 Poitiers, France.
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28
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Cortesão M, Fuchs FM, Commichau FM, Eichenberger P, Schuerger AC, Nicholson WL, Setlow P, Moeller R. Bacillus subtilis Spore Resistance to Simulated Mars Surface Conditions. Front Microbiol 2019; 10:333. [PMID: 30863384 PMCID: PMC6399134 DOI: 10.3389/fmicb.2019.00333] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2018] [Accepted: 02/08/2019] [Indexed: 11/13/2022] Open
Abstract
In a Mars exploration scenario, knowing if and how highly resistant Bacillus subtilis spores would survive on the Martian surface is crucial to design planetary protection measures and avoid false positives in life-detection experiments. Therefore, in this study a systematic screening was performed to determine whether B. subtilis spores could survive an average day on Mars. For that, spores from two comprehensive sets of isogenic B. subtilis mutant strains, defective in DNA protection or repair genes, were exposed to 24 h of simulated Martian atmospheric environment with or without 8 h of Martian UV radiation [M(+)UV and M(-)UV, respectively]. When exposed to M(+)UV, spore survival was dependent on: (1) core dehydration maintenance, (2) protection of DNA by α/β-type small acid soluble proteins (SASP), and (3) removal and repair of the major UV photoproduct (SP) in spore DNA. In turn, when exposed to M(-)UV, spore survival was mainly dependent on protection by the multilayered spore coat, and DNA double-strand breaks represent the main lesion accumulated. Bacillus subtilis spores were able to survive for at least a limited time in a simulated Martian environment, both with or without solar UV radiation. Moreover, M(-)UV-treated spores exhibited survival rates significantly higher than the M(+)UV-treated spores. This suggests that on a real Martian surface, radiation shielding of spores (e.g., by dust, rocks, or spacecraft surface irregularities) might significantly extend survival rates. Mutagenesis were strongly dependent on the functionality of all structural components with small acid-soluble spore proteins, coat layers and dipicolinic acid as key protectants and efficiency DNA damage removal by AP endonucleases (ExoA and Nfo), non-homologous end joining (NHEJ), mismatch repair (MMR) and error-prone translesion synthesis (TLS). Thus, future efforts should focus on: (1) determining the DNA damage in wild-type spores exposed to M(+/-)UV and (2) assessing spore survival and viability with shielding of spores via Mars regolith and other relevant materials.
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Affiliation(s)
- Marta Cortesão
- Space Microbiology Research Group, Radiation Biology Department, Institute of Aerospace Medicine, German Aerospace Center, Cologne, Germany
| | - Felix M Fuchs
- Space Microbiology Research Group, Radiation Biology Department, Institute of Aerospace Medicine, German Aerospace Center, Cologne, Germany
| | - Fabian M Commichau
- Department of General Microbiology, Institute for Microbiology and Genetics, University of Göttingen, Göttingen, Germany
| | - Patrick Eichenberger
- Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY, United States
| | - Andrew C Schuerger
- Department of Plant Pathology, Space Life Sciences Laboratory, University of Florida, Merritt Island, FL, United States
| | - Wayne L Nicholson
- Department of Microbiology and Cell Science, Space Life Sciences Laboratory, University of Florida, Merritt Island, FL, United States
| | - Peter Setlow
- Department of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT, United States
| | - Ralf Moeller
- Space Microbiology Research Group, Radiation Biology Department, Institute of Aerospace Medicine, German Aerospace Center, Cologne, Germany
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Noell AC, Fisher AM, Fors‐Francis K, Sherrit S. Subcritical water extraction of amino acids from Mars analog soils. Electrophoresis 2018; 39:2854-2863. [DOI: 10.1002/elps.201700459] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2017] [Revised: 12/29/2017] [Accepted: 01/01/2018] [Indexed: 11/09/2022]
Affiliation(s)
- Aaron C. Noell
- Jet Propulsion LaboratoryCalifornia Institute of Technology Pasadena CA USA
| | - Anita M. Fisher
- Jet Propulsion LaboratoryCalifornia Institute of Technology Pasadena CA USA
| | - Kisa Fors‐Francis
- Jet Propulsion LaboratoryCalifornia Institute of Technology Pasadena CA USA
| | - Stewart Sherrit
- Jet Propulsion LaboratoryCalifornia Institute of Technology Pasadena CA USA
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A Low-Cost Palmtop High-Speed Capillary Electrophoresis Bioanalyzer with Laser Induced Fluorescence Detection. Sci Rep 2018; 8:1791. [PMID: 29379053 PMCID: PMC5789010 DOI: 10.1038/s41598-018-20058-0] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2016] [Accepted: 01/12/2018] [Indexed: 12/28/2022] Open
Abstract
In this work, we developed a miniaturized palmtop high-speed capillary electrophoresis (CE) system integrating whole modules, including picoliter-scale sample injection, short capillary-based fast CE, high-voltage power supply, orthogonal laser induced fluorescence (LIF) detection, battery, system control, on-line data acquisition, processing, storage, and display modules. A strategy of minimalist miniaturization combining minimal system design and low-cost system construction was adopted to achieve the instrument miniaturization with extremely low cost, which is differing from the current microfabrication strategy used in most reported miniaturized CE systems. With such a strategy, the total size of the bioanalyzer was minimized to 90 × 75 × 77 mm (length × width × height) and the instrument cost was reduced to ca. $500, which demonstrated the smallest and lowest-cost CE instrument with LIF detection in so far reported systems. The present bioanalyzer also exhibited comparable analytical performances to previously-reported high-speed CE systems. A limit of detection of 1.02 nM sodium fluorescein was obtained. Fast separations were achieved for multiple types of samples as amino acids, amino acid enantiomers, DNA fragments, and proteins with high efficiency. We applied this instrument in colorectal cancer diagnosis for detecting KRAS mutation status by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method.
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31
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Mathies RA, Razu ME, Kim J, Stockton AM, Turin P, Butterworth A. Feasibility of Detecting Bioorganic Compounds in Enceladus Plumes with the Enceladus Organic Analyzer. ASTROBIOLOGY 2017; 17:902-912. [PMID: 28915087 PMCID: PMC5610425 DOI: 10.1089/ast.2017.1660] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Enceladus presents an excellent opportunity to detect organic molecules that are relevant for habitability as well as bioorganic molecules that provide evidence for extraterrestrial life because Enceladus' plume is composed of material from the subsurface ocean that has a high habitability potential and significant organic content. A primary challenge is to send instruments to Enceladus that can efficiently sample organic molecules in the plume and analyze for the most relevant molecules with the necessary detection limits. To this end, we present the scientific feasibility and engineering design of the Enceladus Organic Analyzer (EOA) that uses a microfluidic capillary electrophoresis system to provide sensitive detection of a wide range of relevant organic molecules, including amines, amino acids, and carboxylic acids, with ppm plume-detection limits (100 pM limits of detection). Importantly, the design of a capture plate that effectively gathers plume ice particles at encounter velocities from 200 m/s to 5 km/s is described, and the ice particle impact is modeled to demonstrate that material will be efficiently captured without organic decomposition. While the EOA can also operate on a landed mission, the relative technical ease of a fly-by mission to Enceladus, the possibility to nondestructively capture pristine samples from deep within the Enceladus ocean, plus the high sensitivity of the EOA instrument for molecules of bioorganic relevance for life detection argue for the inclusion of EOA on Enceladus missions. Key Words: Lab-on-a-chip-Organic biomarkers-Life detection-Planetary exploration. Astrobiology 17, 902-912.
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Affiliation(s)
- Richard A. Mathies
- Department of Chemistry, University of California at Berkeley, Berkeley, California
| | - Md Enayet Razu
- Department of Mechanical Engineering, Texas Tech University, Lubbock, Texas
| | - Jungkyu Kim
- Department of Mechanical Engineering, Texas Tech University, Lubbock, Texas
| | - Amanda M. Stockton
- Department of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia
| | - Paul Turin
- Berkeley Space Sciences Lab, University of California at Berkeley, Berkeley, California
| | - Anna Butterworth
- Berkeley Space Sciences Lab, University of California at Berkeley, Berkeley, California
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32
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Novel volumetric method for highly repeatable injection in microchip electrophoresis. Anal Chim Acta 2017; 985:129-140. [PMID: 28864183 DOI: 10.1016/j.aca.2017.05.037] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2017] [Revised: 05/22/2017] [Accepted: 05/22/2017] [Indexed: 12/25/2022]
Abstract
A novel injector for microchip electrophoresis (MCE) has been designed and evaluated that achieves very high repeatability of injection volume suitable for quantitative analysis. It eliminates the injection biases in electrokinetic injection and the dependence on pressure and sample properties in hydrodynamic injection. The microfluidic injector, made of poly(dimethylsiloxane) (PDMS), operates similarly to an HPLC injection valve. It contains a channel segment (chamber) with a well-defined volume that serves as an "injection loop". Using on-chip microvalves, the chamber can be connected to the sample source during the "loading" step, and to the CE separation channel during the "injection" step. Once the valves are opened in the second state, electrophoretic potential is applied to separate the sample. For evaluation and demonstration purposes, the microinjector was connected to a 75 μm ID capillary and UV absorbance detector. For single compounds, a relative standard deviation (RSD) of peak area as low as 1.04% (n = 11) was obtained, and for compound mixtures, RSD as low as 0.40% (n = 4) was observed. Using the same microchip, the performance of this new injection technique was compared to hydrodynamic injection and found to have improved repeatability and less dependence on sample viscosity. Furthermore, a non-radioactive version of the positron-emission tomography (PET) imaging probe, FLT, was successfully separated from its known 3 structurally-similar byproducts with baseline resolution, demonstrating the potential for rapid, quantitative analysis of impurities to ensure the safety of batches of short-lived radiotracers. Both the separation efficiency and injection repeatability were found to be substantially higher when using the novel volumetric injection approach compared to electrokinetic injection (performed in the same chip). This novel microinjector provides a straightforward way to improve the performance of hydrodynamic injection and enables extremely repeatable sample volume injection in MCE. It could be used in any MCE application where volume repeatability is needed, including the quantitation of impurities in pharmaceutical or radiopharmaceutical samples.
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33
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Anantharaman S, Padmarajaiah N, Al-Tayar NGS, Shrestha AK. Ninhydrin-sodium molybdate chromogenic analytical probe for the assay of amino acids and proteins. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 173:897-903. [PMID: 27821372 DOI: 10.1016/j.saa.2016.10.040] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2015] [Revised: 10/20/2016] [Accepted: 10/20/2016] [Indexed: 06/06/2023]
Abstract
A sensitive method has been proposed for the quantification of amino acids and proteins using ninhydrin and sodium molybdate as chromogenic substrates in citrate buffer of pH5.6. A weak molybdate-hydrindantin complex plays the role in the formation of Ruhemann's purple. The linear response for the amino acid, amino acid mixture and Bovine serum albumin is between 0.999 and 66.80μM, 1.52 and 38μM and 5 and 100μg/L, respectively. The molar absorptivity of the individual amino acid by the proposed reaction extends from 0.58×104 to 2.86×104M-1cm-1. The linearity equations for the proposed ninhydrin-molybdate for amino acid mixture is Abs=0.021×Conc (μM)-0.002. The applicability of the proposed method has been justified in food and biological samples in conjunction with Kjeldahl method.
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34
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Electrophoretic Concentration and Electrical Lysis of Bacteria in a Microfluidic Device Using a Nanoporous Membrane. MICROMACHINES 2017. [PMCID: PMC6189965 DOI: 10.3390/mi8020045] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Pathogenic bacteria such as Escherichia coli O157, Salmonella and Campylobacter are the main causes for food and waterborne illnesses. Lysis of these bacteria is an important component of the sample preparation for molecular identification of these pathogens. The pathogenicity of these bacteria is so high that they cause illness at very low concentrations (1–10 CFU/100 mL). Hence, there is a need to develop methods to collect a small number of such bacterial cells from a large sample volume and process them in an automated reagent-free manner. An electrical method to concentrate the bacteria and lyse them has been chosen here as it is reagent free and hence more conducive for online and automated sample preparation. We use commercially available nanoporous membranes sandwiched between two microfluidic channels to create thousands of parallel nanopore traps for bacteria, electrophoretically accumulate and then lyse them. The nanopores produce a high local electric field for lysis at moderate applied voltages, which could simplify instrumentation and enables lysis of the bacteria as it approaches them under an appropriate range of electric field (>1000 V/cm). Accumulation and lysis of bacteria on the nanoporous membrane is demonstrated by using the LIVE/DEAD BacLight Bacterial Viability Kit and quantified by fluorescence intensity measurements. The efficiency of the device was determined through bacterial culture of the lysate and was found to be 90% when a potential of 300 V was applied for 3 min.
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35
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Du K, Cai H, Park M, Wall TA, Stott MA, Alfson KJ, Griffiths A, Carrion R, Patterson JL, Hawkins AR, Schmidt H, Mathies RA. Multiplexed efficient on-chip sample preparation and sensitive amplification-free detection of Ebola virus. Biosens Bioelectron 2017; 91:489-496. [PMID: 28073029 DOI: 10.1016/j.bios.2016.12.071] [Citation(s) in RCA: 65] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2016] [Revised: 12/26/2016] [Accepted: 12/30/2016] [Indexed: 12/23/2022]
Abstract
An automated microfluidic sample preparation multiplexer (SPM) has been developed and evaluated for Ebola virus detection. Metered air bubbles controlled by microvalves are used to improve bead-solution mixing thereby enhancing the hybridization of the target Ebola virus RNA with capture probes bound to the beads. The method uses thermally stable 4-formyl benzamide functionalized (4FB) magnetic beads rather than streptavidin coated beads with a high density of capture probes to improve the target capture efficiency. Exploiting an on-chip concentration protocol in the SPM and the single molecule detection capability of the antiresonant reflecting optical waveguide (ARROW) biosensor chip, a detection limit of 0.021pfu/mL for clinical samples is achieved without target amplification. This RNA target capture efficiency is two orders of magnitude higher than previous results using streptavidin beads and the limit of detection (LOD) improves 10×. The wide dynamic range of this technique covers the whole clinically applicable concentration range. In addition, the current sample preparation time is ~1h which is eight times faster than previous work. This multiplexed, miniaturized sample preparation microdevice establishes a key technology that intended to develop next generation point-of-care (POC) detection system.
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Affiliation(s)
- K Du
- Department of Chemistry, University of California at Berkeley, Berkeley, CA 94720, USA
| | - H Cai
- School of Engineering, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA
| | - M Park
- Department of Chemistry, University of California at Berkeley, Berkeley, CA 94720, USA
| | - T A Wall
- ECEn Department, Brigham Young University, 459 Clyde Building, Provo, UT 84602, USA
| | - M A Stott
- ECEn Department, Brigham Young University, 459 Clyde Building, Provo, UT 84602, USA
| | - K J Alfson
- Department of Virology and Immunology, Texas Biomedical Research Institute, 7620 NW Loop 410, San Antonio, TX 78227, USA
| | - A Griffiths
- Department of Virology and Immunology, Texas Biomedical Research Institute, 7620 NW Loop 410, San Antonio, TX 78227, USA
| | - R Carrion
- Department of Virology and Immunology, Texas Biomedical Research Institute, 7620 NW Loop 410, San Antonio, TX 78227, USA
| | - J L Patterson
- Department of Virology and Immunology, Texas Biomedical Research Institute, 7620 NW Loop 410, San Antonio, TX 78227, USA
| | - A R Hawkins
- ECEn Department, Brigham Young University, 459 Clyde Building, Provo, UT 84602, USA
| | - H Schmidt
- School of Engineering, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA.
| | - R A Mathies
- Department of Chemistry, University of California at Berkeley, Berkeley, CA 94720, USA.
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Creamer JS, Mora MF, Willis PA. Enhanced Resolution of Chiral Amino Acids with Capillary Electrophoresis for Biosignature Detection in Extraterrestrial Samples. Anal Chem 2016; 89:1329-1337. [DOI: 10.1021/acs.analchem.6b04338] [Citation(s) in RCA: 78] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jessica S. Creamer
- Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Drive, Pasadena, California 91109, United States
| | - Maria F. Mora
- Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Drive, Pasadena, California 91109, United States
| | - Peter A. Willis
- Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Drive, Pasadena, California 91109, United States
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Abstract
In this work we created functional microfluidic chips without actually designing them. We accomplished this by first generating a library of thousands of different random microfluidic chip designs, then simulating the behavior of each design on a computer using automated finite element analysis. The simulation results were then saved to a database which a user can query via to find chip designs suitable for a specific task. To demonstrate this functionality, we used our library to select chip designs that generate any three desired concentrations of a solute. We also fabricated and tested 16 chips from the library, confirmed that they function as predicted, and used these chips to perform a cell growth rate assay. This is one of many different applications for randomly-designed microfluidics; in principle, any microfluidic chip that can be simulated could be designed automatically using our method. Using this approach, individuals with no training in microfluidics can obtain custom chip designs for their own unique needs in just a few seconds.
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Affiliation(s)
- Junchao Wang
- Department of Bioengineering, Bourns College of Engineering, University of California, Riverside, 900 University Ave, Riverside, CA 92521, USA.
| | - Philip Brisk
- Department of Computer Science and Engineering, Bourns College of Engineering, University of California, Riverside, 900 University Ave, Riverside, CA 92521, USA
| | - William H Grover
- Department of Bioengineering, Bourns College of Engineering, University of California, Riverside, 900 University Ave, Riverside, CA 92521, USA.
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38
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Myrgorodska I, Javelle T, Meinert C, Meierhenrich UJ. Enantioselective Gas Chromatography in Search of the Origin of Biomolecular Asymmetry in Outer Space. Isr J Chem 2016. [DOI: 10.1002/ijch.201600067] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Iuliia Myrgorodska
- Institut de Chimie de Nice ICN, UMR CNRS 7272; Université Nice Sophia Antipolis, Faculté des Sciences; ParcValrose 06108 Nice France
- Synchrotron SOLEIL; L'Orme des Merisiers; BP 48 Saint Aubin 91192 Gif-sur-Yvette France
| | - Thomas Javelle
- Institut de Chimie de Nice ICN, UMR CNRS 7272; Université Nice Sophia Antipolis, Faculté des Sciences; ParcValrose 06108 Nice France
| | - Cornelia Meinert
- Institut de Chimie de Nice ICN, UMR CNRS 7272; Université Nice Sophia Antipolis, Faculté des Sciences; ParcValrose 06108 Nice France
| | - Uwe J. Meierhenrich
- Institut de Chimie de Nice ICN, UMR CNRS 7272; Université Nice Sophia Antipolis, Faculté des Sciences; ParcValrose 06108 Nice France
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39
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Kim J, Stockton AM, Jensen EC, Mathies RA. Pneumatically actuated microvalve circuits for programmable automation of chemical and biochemical analysis. LAB ON A CHIP 2016; 16:812-9. [PMID: 26864083 DOI: 10.1039/c5lc01397f] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Programmable microfluidic platforms (PMPs) are enabling significant advances in the utility of microfluidics for chemical and biochemical analysis. Traditional microfluidic devices are analogous to application-specific devices--a new device is needed to implement each new chemical or biochemical assay. PMPs are analogous to digital electronic processors--all that is needed to implement a new assay is a change in the order of operations conducted by the device. In this review, we introduce PMPs based on normally-closed microvalves. We discuss recent applications of PMPs in diverse fields including genetic analysis, antibody-based biomarker analysis, and chemical analysis in planetary exploration. Prospects, challenges, and future concepts for this emerging technology will also be presented.
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Affiliation(s)
- Jungkyu Kim
- Department of Mechanical Engineering, Texas Tech University, Lubbock, TX, USA
| | - Amanda M Stockton
- Department of Chemistry, Georgia Institute of Technology, Atlanta, GA 30332, USA
| | | | - Richard A Mathies
- Department of Chemistry, University of California, Berkeley, CA 94720, USA.
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40
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Fang XX, Li HY, Fang P, Pan JZ, Fang Q. A handheld laser-induced fluorescence detector for multiple applications. Talanta 2015; 150:135-41. [PMID: 26838391 DOI: 10.1016/j.talanta.2015.12.018] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2015] [Revised: 12/02/2015] [Accepted: 12/10/2015] [Indexed: 10/22/2022]
Abstract
In this paper, we present a compact handheld laser-induced fluorescence (LIF) detector based on a 450 nm laser diode and quasi-confocal optical configuration with a total size of 9.1 × 6.2 × 4.1 cm(3). Since there are few reports on the use of 450 nm laser diode in LIF detection, especially in miniaturized LIF detector, we systematically investigated various optical arrangements suitable for the requirements of 450 nm laser diode and system miniaturization, including focusing lens, filter combination, and pinhole, as well as Raman effect of water at 450 nm excitation wavelength. As the result, the handheld LIF detector integrates the light source (450 nm laser diode), optical circuit module (including a 450 nm band-pass filter, a dichroic mirror, a collimating lens, a 525 nm band-pass filter, and a 1.0mm aperture), optical detector (miniaturized photomultiplier tube), as well as electronic module (including signal recording, processing and displaying units). This detector is capable of working independently with a cost of ca. $2000 for the whole instrument. The detection limit of the instrument for sodium fluorescein solution is 0.42 nM (S/N=3). The broad applicability of the present system was demonstrated in capillary electrophoresis separation of fluorescein isothiocyanate (FITC) labeled amino acids and in flow cytometry of tumor cells as an on-line LIF detector, as well as in droplet array chip analysis as a LIF scanner. We expect such a compact LIF detector could be applied in flow analysis systems as an on-line detector, and in field analysis and biosensor analysis as a portable universal LIF detector.
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Affiliation(s)
- Xiao-Xia Fang
- Institute of Microanalytical Systems, Department of Chemistry, Zhejiang University, Hangzhou 310058, China
| | - Han-Yang Li
- Institute of Microanalytical Systems, Department of Chemistry, Zhejiang University, Hangzhou 310058, China
| | - Pan Fang
- Institute of Microanalytical Systems, Department of Chemistry, Zhejiang University, Hangzhou 310058, China
| | - Jian-Zhang Pan
- Institute of Microanalytical Systems, Department of Chemistry, Zhejiang University, Hangzhou 310058, China.
| | - Qun Fang
- Institute of Microanalytical Systems, Department of Chemistry, Zhejiang University, Hangzhou 310058, China.
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Willis PA, Creamer JS, Mora MF. Implementation of microchip electrophoresis instrumentation for future spaceflight missions. Anal Bioanal Chem 2015; 407:6939-63. [PMID: 26253225 DOI: 10.1007/s00216-015-8903-z] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2015] [Revised: 06/30/2015] [Accepted: 07/03/2015] [Indexed: 11/27/2022]
Abstract
We present a comprehensive discussion of the role that microchip electrophoresis (ME) instrumentation could play in future NASA missions of exploration, as well as the current barriers that must be overcome to make this type of chemical investigation possible. We describe how ME would be able to fill fundamental gaps in our knowledge of the potential for past, present, or future life beyond Earth. Despite the great promise of ME for ultrasensitive portable chemical analysis, to date, it has never been used on a robotic mission of exploration to another world. We provide a current snapshot of the technology readiness level (TRL) of ME instrumentation, where the TRL is the NASA systems engineering metric used to evaluate the maturity of technology, and its fitness for implementation on missions. We explain how the NASA flight implementation process would apply specifically to ME instrumentation, and outline the scientific and technology development issues that must be addressed for ME analyses to be performed successfully on another world. We also outline research demonstrations that could be accomplished by independent researchers to help advance the TRL of ME instrumentation for future exploration missions. The overall approach described here for system development could be readily applied to a wide range of other instrumentation development efforts having broad societal and commercial impact.
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Affiliation(s)
- Peter A Willis
- Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Dr., Pasadena, CA, 91109, USA,
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42
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Röling WF, Aerts JW, Patty CL, ten Kate IL, Ehrenfreund P, Direito SO. The Significance of Microbe-Mineral-Biomarker Interactions in the Detection of Life on Mars and Beyond. ASTROBIOLOGY 2015; 15:492-507. [PMID: 26060985 PMCID: PMC4490593 DOI: 10.1089/ast.2014.1276] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
The detection of biomarkers plays a central role in our effort to establish whether there is, or was, life beyond Earth. In this review, we address the importance of considering mineralogy in relation to the selection of locations and biomarker detection methodologies with characteristics most promising for exploration. We review relevant mineral-biomarker and mineral-microbe interactions. The local mineralogy on a particular planet reflects its past and current environmental conditions and allows a habitability assessment by comparison with life under extreme conditions on Earth. The type of mineral significantly influences the potential abundances and types of biomarkers and microorganisms containing these biomarkers. The strong adsorptive power of some minerals aids in the preservation of biomarkers and may have been important in the origin of life. On the other hand, this strong adsorption as well as oxidizing properties of minerals can interfere with efficient extraction and detection of biomarkers. Differences in mechanisms of adsorption and in properties of minerals and biomarkers suggest that it will be difficult to design a single extraction procedure for a wide range of biomarkers. While on Mars samples can be used for direct detection of biomarkers such as nucleic acids, amino acids, and lipids, on other planetary bodies remote spectrometric detection of biosignatures has to be relied upon. The interpretation of spectral signatures of photosynthesis can also be affected by local mineralogy. We identify current gaps in our knowledge and indicate how they may be filled to improve the chances of detecting biomarkers on Mars and beyond.
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Affiliation(s)
- Wilfred F.M. Röling
- Molecular Cell Physiology, Faculty of Earth and Life Sciences, VU University Amsterdam, Amsterdam, the Netherlands
| | - Joost W. Aerts
- Molecular Cell Physiology, Faculty of Earth and Life Sciences, VU University Amsterdam, Amsterdam, the Netherlands
| | - C.H. Lucas Patty
- Molecular Cell Physiology, Faculty of Earth and Life Sciences, VU University Amsterdam, Amsterdam, the Netherlands
| | - Inge Loes ten Kate
- Department of Earth Sciences, Faculty of Geosciences, Utrecht University, Utrecht, the Netherlands
| | - Pascale Ehrenfreund
- Space Policy Institute, George Washington University, Washington, DC, USA
- Leiden Observatory, University of Leiden, Leiden, the Netherlands
| | - Susana O.L. Direito
- Molecular Cell Physiology, Faculty of Earth and Life Sciences, VU University Amsterdam, Amsterdam, the Netherlands
- School of Physics and Astronomy, University of Edinburgh, Edinburgh, UK
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43
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Thurmann S, Lotter C, Heiland JJ, Chankvetadze B, Belder D. Chip-Based High-Performance Liquid Chromatography for High-Speed Enantioseparations. Anal Chem 2015; 87:5568-76. [DOI: 10.1021/acs.analchem.5b00210] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Sebastian Thurmann
- Institute
of Analytical Chemistry, University of Leipzig, Linnéstraße 3, 04103 Leipzig, Germany
| | - Carsten Lotter
- Institute
of Analytical Chemistry, University of Leipzig, Linnéstraße 3, 04103 Leipzig, Germany
| | - Josef J. Heiland
- Institute
of Analytical Chemistry, University of Leipzig, Linnéstraße 3, 04103 Leipzig, Germany
| | - Bezhan Chankvetadze
- Department
of Physical and Analytical Chemistry, School of Exact and Natural
Sciences, Tbilisi State University, 0179 Tbilisi, Republic of Georgia
| | - Detlev Belder
- Institute
of Analytical Chemistry, University of Leipzig, Linnéstraße 3, 04103 Leipzig, Germany
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Hendrickx S, de Malsche W, Cabooter D. An overview of the use of microchips in electrophoretic separation techniques: fabrication, separation modes, sample preparation opportunities, and on-chip detection. Methods Mol Biol 2015; 1274:3-17. [PMID: 25673478 DOI: 10.1007/978-1-4939-2353-3_1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
This chapter is intended as a basic introduction to microchip-based capillary electrophoresis to set the scene for newcomers and give pointers to reference material. An outline of some commonly used setups and key concepts is given, many of which are explored in greater depth in later chapters.
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Affiliation(s)
- Stijn Hendrickx
- Department of Pharmaceutical and Pharmacological Sciences, Pharmaceutical Analysis, KU Leuven, O&N2 923, Herestraat 49, 3000, Leuven, Belgium
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46
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Mora MF, Stockton AM, Willis PA. Analysis of thiols by microchip capillary electrophoresis for in situ planetary investigations. Methods Mol Biol 2015; 1274:43-52. [PMID: 25673481 DOI: 10.1007/978-1-4939-2353-3_4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Microchip capillary electrophoresis with laser-induced fluorescence detection (μCE-LIF) enables sensitive analyses of a wide range of analytes employing small volumes of sample and reagent (nL to μL) on an instrument platform with minimal mass, volume, and power requirements. This technique has been used previously in the analysis of amino acids and other organic molecules of interest in the fields of astrobiology and planetary science. Here, we present a protocol for the analysis of thiols using μCE-LIF. This protocol utilizes Pacific Blue C5-maleimide for fluorescent derivatization of thiols, enabling limits of detection in the low nM range (1.4-15 nM). Separations are conducted in micellar electrokinetic chromatography mode with 25 mM sodium dodecyl sulfate in 15 mM tetraborate, pH 9.2. This method allows analysis of 12 thiols in less than 2 min following a labeling step of 2 h. A step-by-step protocol, including tips on microchip capillary electrophoresis, is described here.
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Affiliation(s)
- Maria F Mora
- NASA Jet Propulsion Laboratory, California Institute of Technology, Mail Stop 302-231, 4800 Oak Grove Dr., Pasadena, CA, 91109, USA
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47
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Ferey L, Delaunay N. Capillary and microchip electrophoretic analysis of polycyclic aromatic hydrocarbons. Anal Bioanal Chem 2014; 407:2727-47. [PMID: 25542576 DOI: 10.1007/s00216-014-8390-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2014] [Revised: 11/24/2014] [Accepted: 12/03/2014] [Indexed: 12/18/2022]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are ubiquitous contaminants which can reach the environment and food in different ways. Because of their high toxicity, two international regulatory institutions, the US Environmental Protection Agency and the European Food Safety Authority, have classified PAHs as priority pollutants, generating an important demand for the detection and identification of PAHs. Thus, sensitive, fast, and cheap methods for the analysis of PAHs in environmental and food samples are urgently needed. Within this context, electrophoresis, in capillary or microchip format, displays attractive features. This review presents and critically discusses the published literature on the different approaches to capillary and microchip electrophoresis analysis of PAHs.
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Affiliation(s)
- Ludivine Ferey
- Laboratory of Analytical and Bioanalytical Sciences and Miniaturization, Chemistry, Biology, and Innovation (CBI), UMR 8231 CNRS - ESPCI ParisTech, PSL Research University, 75005, Paris, France
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48
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Abdul Keyon AS, Guijt RM, Bolch CJ, Breadmore MC. Transient isotachophoresis-capillary zone electrophoresis with contactless conductivity and ultraviolet detection for the analysis of paralytic shellfish toxins in mussel samples. J Chromatogr A 2014; 1364:295-302. [DOI: 10.1016/j.chroma.2014.08.074] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2014] [Revised: 08/20/2014] [Accepted: 08/22/2014] [Indexed: 01/12/2023]
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49
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da Costa ET, Mora MF, Willis PA, do Lago CL, Jiao H, Garcia CD. Getting started with open-hardware: development and control of microfluidic devices. Electrophoresis 2014; 35:2370-7. [PMID: 24823494 PMCID: PMC4176689 DOI: 10.1002/elps.201400128] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2014] [Revised: 05/07/2014] [Accepted: 05/07/2014] [Indexed: 12/20/2022]
Abstract
Understanding basic concepts of electronics and computer programming allows researchers to get the most out of the equipment found in their laboratories. Although a number of platforms have been specifically designed for the general public and are supported by a vast array of on-line tutorials, this subject is not normally included in university chemistry curricula. Aiming to provide the basic concepts of hardware and software, this article is focused on the design and use of a simple module to control a series of PDMS-based valves. The module is based on a low-cost microprocessor (Teensy) and open-source software (Arduino). The microvalves were fabricated using thin sheets of PDMS and patterned using CO2 laser engraving, providing a simple and efficient way to fabricate devices without the traditional photolithographic process or facilities. Synchronization of valve control enabled the development of two simple devices to perform injection (1.6 ± 0.4 μL/stroke) and mixing of different solutions. Furthermore, a practical demonstration of the utility of this system for microscale chemical sample handling and analysis was achieved performing an on-chip acid-base titration, followed by conductivity detection with an open-source low-cost detection system. Overall, the system provided a very reproducible (98%) platform to perform fluid delivery at the microfluidic scale.
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Affiliation(s)
- Eric Tavares da Costa
- Department of Chemistry, The University of Texas at San Antonio
- Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo
| | - Maria F. Mora
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena CA, USA
| | - Peter A. Willis
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena CA, USA
| | - Claudimir L. do Lago
- Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo
| | - Hong Jiao
- HJ Science & Technology, 2929 Seventh Street, Suite 120, Berkeley, CA 94710 Berkeley, CA, USA
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50
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Xu Z, Oleschuk RD. A fluorous porous polymer monolith photo-patterned chromatographic column for the separation of a flourous/fluorescently labeled peptide within a microchip. Electrophoresis 2013; 35:441-9. [DOI: 10.1002/elps.201300365] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2013] [Revised: 10/15/2013] [Accepted: 10/15/2013] [Indexed: 11/12/2022]
Affiliation(s)
- Zhenpo Xu
- Department of Chemistry; Queen's University; Kingston Ontario Canada
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