Interaction between the intermediary electron acceptor (pheophytin) and a possible plastoquinone-iron complex in photosystem II reaction centers

In memory of Vladimir Anatolievich Shuvalov (1943-2022): an outstanding biophysicist

We present here a tribute to one of the foremost biophysicists of our time, Vladimir Anatolievich Shuvalov, who made important contributions in bioenergetics, especially on the primary steps of conversion of light energy into charge-separated states in both anoxygenic and oxygenic photosynthesis. For this, he and his research team exploited pico- and femtosecond transient absorption spectroscopy, photodichroism & circular dichroism spectroscopy, light-induced FTIR (Fourier-transform infrared) spectroscopy, and hole-burning spectroscopy. We remember him for his outstanding leadership and for being a wonderful mentor to many scientists in this area. Reminiscences by many [Suleyman Allakhverdiev (Russia); Robert Blankenship (USA); Richard Cogdell (UK); Arvi Freiberg (Estonia); Govindjee Govindjee (USA); Alexander Krasnovsky, jr, (Russia); William Parson (USA); Andrei Razjivin (Russia); Jian- Ren Shen (Japan); Sergei Shuvalov (Russia); Lyudmilla Vasilieva (Russia); and Andrei Yakovlev (Russia)] have included not only his wonderful personal character, but his outstanding scientific research.

Honoring Bacon Ke at 100: a legend among the many luminaries and a highly collaborative scientist in photosynthesis research

Bacon Ke, who did pioneering research on the primary photochemistry of photosynthesis, was born in China on July 26, 1920, and currently, he is living in a senior home in San Francisco, California, and is a centenarian. To us, this is a very happy and unique occasion to honor him. After providing a brief account of his life, and a glimpse of his research in photosynthesis, we present here "messages" for Bacon Ke@ 100 from: Robert Alfano (USA), Charles Arntzen (USA), Sandor Demeter (Hungary), Richard A. Dilley (USA), John Golbeck (USA), Isamu Ikegami (Japan), Ting-Yun Kuang (China), Richard Malkin (USA), Hualing Mi (China), Teruo Ogawa (Japan), Yasusi Yamamoto (Japan), and Xin-Guang Zhu (China).

Systematic measurements of charge transfer complexes caused from 1-phenyl-1,2,3,4-tetrahydroisoquinoline and 4-aminoacetanilide with series of π-acceptors (BQ, DDQ, TCNQ)

Molecular charge-transfer interaction of a series of electron π-acceptors of 1,4-benzoquinone (BQ), 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) and Tetracyanoquinodimethane (TCNQ) with selected donors of 1-phenyl-1,2,3,4-tetrahydroisoquinoline (PTHIQ) and 4-aminoacetanilide (ACE) have been studied in methanol at room temperature. The stoichiometry of the complexes was determined by photometric titration method and was found to be 1:1, in all the cases. Spectro-kinetic interaction studies along with rate constants and observed formation constants (K) indicated that the strength of the complex formations is PTHIQ-BQ < PTHIQ-DDQ < PTHIQ-TCNQ. Also, Similar observations happened in ACE-BQ and < ACE-DDQ < ACE-TCNQ systems. FT-IR results indicated that the point of interaction was identifying in NH moiety of PTHIQ and NH₂ moiety of ACE with series of π-acceptor complexes. The experimental results were compared with Ab initio DFT calculations at the B3LYP/6-31 + G(d) level of theory. The increasing order of the experimentally measured formation constant of CT-complexes (PTHIQ and ACE with series of acceptors) was well supported by theoretical HOMO-LUMO energy gap and drastically changes in Mulliken charges of NH moiety of PTHIQ, NH₂ moiety of ACE with complexation with acceptors.

Vyacheslav (Slava) Klimov (1945-2017): A scientist par excellence, a great human being, a friend, and a Renaissance man

Vyacheslav Vasilevich (V.V.) Klimov (or Slava, as most of us called him) was born on January 12, 1945 and passed away on May 9, 2017. He began his scientific career at the Bach Institute of Biochemistry of the USSR Academy of Sciences (Akademy Nauk (AN) SSSR), Moscow, Russia, and then, he was associated with the Institute of Photosynthesis, Pushchino, Moscow Region, for about 50 years. He worked in the field of biochemistry and biophysics of photosynthesis. He is known for his studies on the molecular organization of photosystem II (PSII). He was an eminent scientist in the field of photobiology, a well-respected professor, and, above all, an outstanding researcher. Further, he was one of the founding members of the Institute of Photosynthesis in Pushchino, Russia. To most, Slava Klimov was a great human being. He was one of the pioneers of research on the understanding of the mechanism of light energy conversion and of water oxidation in photosynthesis. Slava had many collaborations all over the world, and he is (and will be) very much missed by the scientific community and friends in Russia as well as around the World. We present here a brief biography and some comments on his research in photosynthesis. We remember him as a friendly and enthusiastic person who had an unflagging curiosity and energy to conduct outstanding research in many aspects of photosynthesis, especially that related to PSII.

The wavelength of the incident light determines the primary charge separation pathway in Photosystem II

Charge separation is a key component of the reactions cascade of photosynthesis, by which solar energy is converted to chemical energy. From this photochemical reaction, two radicals of opposite charge are formed, a highly reducing anion and a highly oxidising cation. We have previously proposed that the cation after far-red light excitation is located on a component different from P_D1, which is the location of the primary electron hole after visible light excitation. Here, we attempt to provide further insight into the location of the primary charge separation upon far-red light excitation of PS II, using the EPR signal of the spin polarized ³P₆₈₀ as a probe. We demonstrate that, under far-red light illumination, the spin polarized ³P₆₈₀ is not formed, despite the primary charge separation still occurring at these conditions. We propose that this is because under far-red light excitation, the primary electron hole is localized on Chl_D1, rather than on P_D1. The fact that identical samples have demonstrated charge separation upon both far-red and visible light excitation supports our hypothesis that two pathways for primary charge separation exist in parallel in PS II reaction centres. These pathways are excited and activated dependent of the wavelength applied.

The nonheme iron in photosystem II

Photosystem II (PSII), the light-driven water:plastoquinone (PQ) oxidoreductase of oxygenic photosynthesis, contains a nonheme iron (NHI) at its electron acceptor side. The NHI is situated between the two PQs QA and QB that serve as one-electron transmitter and substrate of the reductase part of PSII, respectively. Among the ligands of the NHI is a (bi)carbonate originating from CO2, the substrate of the dark reactions of oxygenic photosynthesis. Based on recent advances in the crystallography of PSII, we review the structure of the NHI in PSII and discuss ideas concerning its function and the role of bicarbonate along with a comparison to the reaction center of purple bacteria and other enzymes containing a mononuclear NHI site.

Charge transfer complexes of quinones in aqueous medium: spectroscopic and theoretical studies on interaction of cimetidine with novel substituted 1,4-benzoquinones and its application in colorimetric sensing of anions

For the first time, the charge transfer (CT) complexes of quinones in aqueous medium have been reported. A series of novel water soluble 1,4-benzoquinones possessing variable number of chloro and methoxy substituents has been employed as electron acceptors (MQ1-4) in the CT complexation with cimetidine (CTD) drug. The mechanism of the interaction has been investigated using various spectral techniques such as UV-Vis, (1)H NMR and FT-IR spectra. The rate of the CT interaction was observed to decrease with progressive replacement of chloro by methoxy substituent in the quinone and this variation is well supported by the formation constant and enthalpy of activation values. Ab initio DFT calculations predicted that the variation in the bond lengths of the carbonyl moieties and the charge densities on the carbonyl oxygen atoms depend largely on the nature of the substituent present in the quinone ring. Also, the HOMO(Donor)-LUMO(Acceptor) energy gaps correlate linearly with the formation constants of the CT complex. The equilibrium, kinetic, electrochemical and theoretical investigations of the CT interaction of these quinones indicated that progressive replacement of electron withdrawing chlorine atom (-I effect) by an electron releasing methoxy group (+M effect) makes these acceptors progressively weaker. The charge-transfer complex, formed between CTD and monomethoxy quinone derivative, has been employed as a new class of chromogenic sensor for the colorimetric sensing of fluoride and acetate ions.

Charge separation in photosystem II: a comparative and evolutionary overview

Our current understanding of the PSII reaction centre owes a great deal to comparisons to the simpler and better understood, purple bacterial reaction centre. Here we provide an overview of the similarities with a focus on charge separation and the electron acceptors. We go on to discuss some of the main differences between the two kinds of reaction centres that have been highlighted by the improving knowledge of PSII. We attempt to relate these differences to functional requirements of water splitting. Some are directly associated with that function, e.g. high oxidation potentials, while others are associated with regulation and protection against photodamage. The protective and regulatory functions are associated with the harsh chemistry performed during its normal function but also with requirements of the enzyme while it is undergoing assembly and repair. Key aspects of PSII reaction centre evolution are also addressed. This article is part of a Special Issue entitled: Photosystem II.

Radical pair state in photosystem II

A stable light-induced EPR signal is reported in photosystem II particles and in chloroplasts at 5 K. Characteristic spectral features indicate that the signal arises from dipole-dipole interactions of a radical pair triplet state. From its dependence on potential, its relationship to the spin-polarized triplet state, and the redox state of the pheophytin acceptor (Ph) and because it is present in Tris-washed chloroplasts but not in untreated chloroplasts, we conclude that the signal is formed when the reaction center is in the state D(+)P(680)Ph(-) (P(680) is the primary chlorophyll donor and D(+) is an oxidized donor to P(680)). The low-temperature photochemical sequence is thought to occur as follows. (i) Donation from D to the P(680) (+)Ph(-) state occurs at liquid helium temperature in low quantum yield; this reaction is reversible at temperatures above 5 K. (ii) In normal chloroplasts, donation occurs to the D(+)P(680)Ph(-) state, but this does not occur in Tris-washed chloroplasts or in the photosystem II particles at 77 K or lower. (iii) Illumination, at 200 K, of photosystem particles or Tris-washed chloroplasts results in donation to the D(+)P(680)Ph(-) state from another donor. From experiments in the absence of redox mediators and the temperatures dependence of the splitting of the signal, it is suggested that the state D(+)P(680)Ph(-) itself may be the origin of the radical pair triplet signal. The signal has been simulated by assuming the presence of at least two distinct radical pairs that differ slightly in the distance separating the radicals of the pairs. The distance between the radicals of the pair is calculated to be 6-7 A.

EPR characterization of photosystem II from different domains of the thylakoid membrane

We report electron paramagnetic resonance (EPR) studies on photosystem II (PSII) from higher plants in five different domains of the thylakoid membrane prepared by sonication and two-phase partitioning. The domains studied were the grana core, the entire grana stack, the grana margins, the stroma lamellae and the purified stromal fraction, Y100. The electron transport properties of both donor and acceptor sides of PSII such as oxygen evolution, cofactors Y D, Q A, the CaMn 4-cluster, and Cytb 559 were investigated. The PSII content was estimated on the basis of oxidized Y D and Q A (-) Fe (2+) signal from the acceptor side vs Chl content (100% in the grana core fraction). It was found to be about 82% in the grana, 59% in the margins, 35% in the stroma and 15% in the Y100 fraction. The most active PSII centers were found in the granal fractions as was estimated from the rates of electron transfer and the S 2 state multiline EPR signal. In the margin and stroma fractions the multiline signal was smaller (40 and 33%, respectively). The S 2 state multiline could not be induced in the Y100 fraction. In addition, the oxidized LP Cytb 559 prevailed in the stromal fractions while the HP form dominated in the grana core. The margins and entire grana fractions have Cytb 559 in both potential forms. These data together with previous analyses indicate that the sequence of activation of the PSII properties can be represented as: PSII content > oxygen evolution > reduced Cytb 559 > dimerization of PSII centers in all fractions of the thylakoid membrane with the gradual increase from stromal fractions via margin to the grana core fraction. The results further support the existence of a PSII activity gradient which reflects lateral movement and photoactivation of PSII centers in the thylakoid membrane. The possible role of the PSII redox components in this process is discussed.

EPR characterisation of the triplet state in photosystem II reaction centers with singly reduced primary acceptor Q(A)

The triplet states of photosystem II core particles from spinach were studied using time-resolved cw EPR technique at different reduction states of the iron--quinone complex of the reaction center primary electron acceptor. With doubly reduced primary acceptor, the well-known photosystem II triplet state characterised by zero-field splitting parameters |D|=0.0286 cm(-1), |E|=0.0044 cm(-1) was detected. When the primary acceptor was singly reduced either chemically or photochemically, a triplet state of a different spectral shape was observed, bearing the same D and E values and characteristic spin polarization pattern arising from RC radical pair recombination. The latter triplet state was strongly temperature dependent disappearing at T=100 K, and had a much faster decay than the former one. Based on its properties, this triplet state was also ascribed to the photosystem II reaction center. A sequence of electron-transfer events in the reaction centers is proposed that explains the dependence of the triplet state properties on the reduction state of the iron--quinone primary acceptor complex.

Molecular interference of Cd2+ with Photosystem II

Many heavy metals inhibit electron transfer reactions in Photosystem II (PSII). Cd(2+) is known to exchange, with high affinity in a slow reaction, for the Ca(2+) cofactor in the Ca/Mn cluster that constitutes the oxygen-evolving center. This results in inhibition of photosynthetic oxygen evolution. There are also indications that Cd(2+) binds to other sites in PSII, potentially to proton channels in analogy to heavy metal binding in photosynthetic reaction centers from purple bacteria. In search for the effects of Cd(2+)-binding to those sites, we have studied how Cd(2+) affects electron transfer reactions in PSII after short incubation times and in sites, which interact with Cd(2+) with low affinity. Overall electron transfer and partial electron transfer were studied by a combination of EPR spectroscopy of individual redox components, flash-induced variable fluorescence and steady state oxygen evolution measurements. Several effects of Cd(2+) were observed: (i) the amplitude of the flash-induced variable fluorescence was lost indicating that electron transfer from Y(Z) to P(680)(+) was inhibited; (ii) Q(A)(-) to Q(B) electron transfer was slowed down; (iii) the S(2) state multiline EPR signal was not observable; (iv) steady state oxygen evolution was inhibited in both a high-affinity and a low-affinity site; (v) the spectral shape of the EPR signal from Q(A)(-)Fe(2+) was modified but its amplitude was not sensitive to the presence of Cd(2+). In addition, the presence of both Ca(2+) and DCMU abolished Cd(2+)-induced effects partially and in different sites. The number of sites for Cd(2+) binding and the possible nature of these sites are discussed.

The beginnings of research on biophysics of photosynthesis and initial contributions made by Russian scientists to its development

In contrast to the classical sciences, biophysics is difficult to define. For example, Roderick Clayton suggested that biophysics requires 'solid grounding in physics, chemistry and mathematics together with enough biology and biochemistry' [Clayton RK (1988) Photosynth Res 19: 207-224]. One may see from the proceedings of the recent biophysical congresses that their materials and ideas in a very wide sense are biological, including global geographic and ecological problems. To be recognized as biophysical, either physico-chemical methods or at least some mathematical and computer programs are usually involved in such work. One exception is the biophysics of photosynthesis, which deals with fundamental photophysical processes: the absorption of solar radiation by chlorophylls (Chls) and accessory pigments. The subsequent intermolecular transfer of singlet electronic excitation results in a primary energy conversion manifested as pairs of opposite electric charges separated in the pigment-protein complexes called reaction centers [see Clayton RK (2002) Photosynth Res 73: 63-71]. I review the initial, basic contributions in this field, and the most important accomplishments of Russian scientists in the 20th century.

Discovery of pheophytin function in the photosynthetic energy conversion as the primary electron acceptor of Photosystem II

This minireview describes the discovery of participation of pheophytin, a metal-free derivative of chlorophyll, in the early steps of photosynthetic solar energy conversion as the primary electron acceptor of Photosystem II.

Photosynthesis and the charles f. Kettering research laboratory

A review of the establishment and subsequent demise of the Charles F. Kettering Research Laboratory (in Yellow Springs, Ohio) is presented here.

The position of cytochrome b(559) relative to Q(A) in photosystem II studied by electron-electron double resonance (ELDOR)

The electron-electron double resonance (ELDOR) method was applied to measure the dipole interaction between cytochrome (Cyt) b(+)(559) and the primary acceptor quinone (Q(-)(A)), observed at g=2.0045 with the peak to peak width of about 9 G, in Photosystem II (PS II) in which the non-heme Fe(2+) was substituted by Zn(2+). The paramagnetic centers of Cyt b(+)(559)Y(D)Q(-)(A) were trapped by illumination at 273 K for 8 min, followed by dark adaptation for 3 min and freezing into 77 K. The distance between the pair Cyt b(+)(559)-Q(-)(A) was estimated from the dipole interaction constant fitted to the observed ELDOR time profile to be 40+/-1 A. In the membrane oriented PS II particles the angle between the vector from Q(A) to Cyt b(559) and the membrane normal was determined to be 80+/-5 degrees. The position of Cyt b(559) relative to Q(A) suggests that the heme plane is located on the stromal side of the thylakoid membrane. ELDOR was not observed for Cyt b(+)(559) Y(D) spin pair, suggesting the distance between them is more than 50 A.

Orientation of the tyrosyl D, pheophytin anion, and semiquinone Q(A)(*)(-) radicals in photosystem II determined by high-field electron paramagnetic resonance

The radical forms of two cofactors and an amino acid in the photosystem II (PS II) reaction center were studied by using high-field EPR both in frozen solution and in oriented multilayers. Their orientation with respect to the membrane was determined by using one-dimensionally oriented samples. The ring plane of the stable tyrosyl radical, Y(D)(*), makes an angle of 64 degrees +/- 5 degrees with the membrane plane, and the C-O direction is tilted by 72 degrees +/- 5 degrees in the plane of the radical compared to the membrane plane. The semiquinone, Q(A)(*)(-), generated by chemical reduction in samples lacking the non-heme iron, has its ring plane at an angle of 72 degrees +/- 5 degrees to the membrane plane, and the O-O axis is tilted by 21 degrees +/- 5 degrees in the plane of the quinone compared to the membrane plane. This orientation is similar to that of Q(A)(*)(-) in purple bacteria reaction centers except for the tilt angle which is slightly bigger. The pheophytin anion was generated by photoaccumulation under reducing conditions. Its ring plane is almost perpendicular to the membrane with an angle of 70 degrees +/- 5 degrees with respect to the membrane plane. This is very similar to the orientation of the pheophytin in purple bacteria reaction centers. The position of the g tensor with respect to the molecule is tentatively assigned for the anion radical on the basis of this comparison. In this work, the treatment of orientation data from EPR spectroscopy applied to one-dimensionally oriented multilayers is examined in detail, and improvements over previous approaches are given.

Effect of pH on the semiquinone radical Q(A)- in CN-treated photosystem II: study by hyperfine sublevel correlation spectroscopy

The semiquinone radical Q(A)- has been studied by electron spin echo envelope modulation (ESEEM) spectroscopy in Photosystem II membranes treated with CN- at various pH values. Two protein 14N nuclei (N(I) and N(II)) were found to be magnetically coupled with the Q(A)- spin. N(I) is assigned to an amide nitrogen from the protein backbone while N(II) is assigned to the amino nitrogen, N(epsilon), of an imidazole. Above pH 8.5 only the N(I) coupling is present while both N(I) and N(II) couplings are present at lower pH values. These results are interpreted in terms of a model based on the structure of the bacterial reaction center and involving two determining factors. First, the non-heme iron, when present, is ligated to the imidazole that H-bonds to one of the Q(A)- carbonyls. This physical attachment of the imidazole to the iron limits the strength of the H-bond to Q(A)-. Second, a pH-dependent group on the protein controls the strength of the H-bonds to Q(A)-. The pKa of this group is around pH 7.5 in CN(-)-treated PSII.

Reaction centre photochemistry in cyanide-treated photosystem II

EPR was used to study the triplet state of chlorophyll generated by radical pair recombination in the photosystem II (PSII) reaction centre. The spin state of the non-haem Fe2+ was varied using the CN--binding method (Y. Sanakis, V. Petrouleas, B.A. Diner, Biochemistry 33 (1994) 9922-9928) and the redox state of the quinone acceptor (QA) was changed from semi-reduced to fully reduced (F.J.E. van Mieghem, W. Nitschke, P. Mathis, A.W. Rutherford, Biochim. Biophys. Acta 977 (1989) 207-214). It was found that the triplet was not detectable using continuous wave EPR when QA- was present irrespective of the spin-state of the Fe2+. It was also found that the triplet state became detectable by EPR when the semiquinone was removed (by reduction to the quinol) and that the triplet observed was not influenced by the spin state of the Fe2+. Since it is known from earlier work that the EPR detection of the triplet reflects a change in the triplet lifetime, it is concluded that the redox state of the quinone determines the triplet lifetime (at least in terms of its detectability by continuous wave EPR) and that the magnetic state of the iron, (through the weakly exchange-coupled QA- Fe2+ complex) is not a determining factor. In addition, we looked for polarisation transfer from the radical pair to QA- in PSII where the Fe2+ was low spin. Such polarisation is seen in bacterial reaction centres under comparable conditions. In PSII, however, we were unable to find evidence for such polarisation of the semiquinone. It is suggested that both the short triplet lifetime in the presence of QA- and the lack of polarised QA- might be explained in terms of the electron transfer mechanism for triplet quenching involving the semiquinone which was proposed previously (F.J.E. van Mieghem, K. Brettel, B. Hillmann, A. Kamlowski, A.W. Rutherford, E. Schlodder, Biochemistry 34 (1995) 4798-4813). It is suggested that this mechanism may occur in PSII (but not in purple bacterial reaction centres) due the triplet-bearing chlorophyll being adjacent to the pheophytin at low temperature as suggested from structural studies (F.J.E. van Mieghem, K. Satoh, A.W. Rutherford, Biochim. Biophys. Acta 1058 (1992) 379-385).

Infrared spectroscopic identification of the C-O stretching vibration associated with the tyrosyl Z. and D. radicals In photosystem II

Photosystem II (PSII) is a multisubunit complex, which catalyzes the photo-induced oxidation of water and reduction of plastoquinone. Difference Fourier-transform infrared (FT-IR) spectroscopy can be used to obtain information about the structural changes accompanying oxidation of the redox-active tyrosines, D and Z, in PSII. The focus of our work is the assignment of the 1478 cm-1 vibration, which is observable in difference infrared spectra associated with these tyrosyl radicals. The first set of FT-IR experiments is performed with continuous illumination. Use of cyanobacterial strains, in which isotopomers of tyrosine have been incorporated, supports the assignment of a positive 1478/1477 cm-1 mode to the C-O stretching vibration of the tyrosyl radicals. In negative controls, the intensity of this spectral feature decreases. The negative controls involve the use of inhibitors or site-directed mutants, in which the oxidation of Z or D is eliminated, respectively. The assignment of the 1478/1477 cm-1 mode is also based on control EPR and fluorescence measurements, which demonstrate that no detectable Fe+2QA- signal is generated under FT-IR experimental conditions. Additionally, the difference infrared spectrum, associated with formation of the S2QA- state, argues against the assignment of the positive 1478 cm-1 line to the C-O vibration of QA-. In the second set of FT-IR experiments, single turnover flashes are employed, and infrared difference spectra are recorded as a function of time after photoexcitation. Comparison to kinetic transients generated in control EPR experiments shows that the decay of the 1477 cm-1 line precisely parallels the decay of the D. EPR signal. Taken together, these two experimental approaches strongly support the assignment of a component of the 1478/1477 cm-1 vibrational lines to the C-O stretching modes of tyrosyl radicals in PSII. Possible reasons for the apparently contradictory results of Hienerwadel et al. (1996) Biochemistry 35, 15,447-15,460 and Hienerwadel et al. (1997) Biochemistry 36, 14,705-14,711 are discussed. Copyright 1998 Elsevier Science B.V. All rights reserved.

Pulsed EPR measurement of the distance between P680+. and Q(A)-. in photosystem II

Out-of-phase electron spin echo envelope modulation (ESEEM) spectroscopy was used to determine the distance between the primary donor radical cation P680+. and the quinone acceptor radical anion Q(A)-. in iron-depleted photosystem II in membrane fragments from spinach that are deprived of the water oxidizing complex. Furthermore, a lower limit for the distance between the oxidized tyrosine residue Y(Z) of polypeptide D1 and Q(A)-. could be estimated by a comparison of data gathered from samples where the electron transfer from Y(Z) to P680+. is either intact or blocked by preillumination in the presence of NH2OH.