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Trimpin S, Inutan E, Coffinberger H, Hoang K, Yenchick F, Wager-Miller J, Pophristic M, Mackie K, McEwen CN. Instrumentation development, improvement, simplification, and miniaturization: The multifunctional plate source for use in mass spectrometry. EUROPEAN JOURNAL OF MASS SPECTROMETRY (CHICHESTER, ENGLAND) 2023; 29:276-291. [PMID: 37999746 DOI: 10.1177/14690667231211486] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2023]
Abstract
In remembrance of Prof. Dr Przybylski, we are presenting a vision towards his beloved mass spectrometry (MS) and its far-reaching promises outside of the academic laboratory. Sub-atmospheric pressure (AP) ionization MS is well positioned to make a step-change in direct ionization, a concept that allows sublimation/evaporation ionization and mass analyses of volatile and nonvolatile molecules from clean or dirty samples, directly, accurately, sensitively, and in a straightforward manner that has the potential to expand the field of MS into unchartered application areas. Contrary to ambient ionization MS, ionization commences in the sub-AP region of the mass spectrometer, important for practical and safety reasons, and offers inter alia, simplicity, speed, sensitivity, and robustness directly from real-world samples without cleanup. The plate source concept, presented here, provides an easy to use, rapid, and direct sample introduction from AP into the sub-AP of a mass spectrometer. Utilizing sub-AP ionization MS based on the plate source concept, small to large molecules from various environments that would be deemed too dirty for some direct MS methods are demonstrated. The new source concept can be expanded to include multiple ionization methods using the same plate source "front end" without the need to vent the mass spectrometer between the different methods, thus allowing ionization of more compounds on the same mass spectrometer for which any one ionization method may be insufficient. Examples such as fentanyl, gamma-hydroxybutyric acid, clozapine, 1-propionyllysergic acid, hydrocodone angiotensin I and II, myoglobin, and carbonic anhydrase are included.
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Affiliation(s)
- Sarah Trimpin
- Wayne State University, Detroit, MI, USA
- Research and Development, MSTM, LLC, Philadelphia, PA, USA
| | - Ellen Inutan
- Department of Chemistry, Mindanao State University-Illigan Institute of Technology, Illigan City, Philippines
| | - Hope Coffinberger
- Research and Development, MSTM, LLC, Philadelphia, PA, USA
- Department of Chemistry & Biochemistry, Saint Joseph's University, Philadelphia, PA, USA
| | - Khoa Hoang
- Research and Development, MSTM, LLC, Philadelphia, PA, USA
- Department of Chemistry & Biochemistry, Saint Joseph's University, Philadelphia, PA, USA
| | | | - James Wager-Miller
- Psychological and Brain Sciences Campus, Indiana University, Bloomington, IN, USA
| | - Milan Pophristic
- Research and Development, MSTM, LLC, Philadelphia, PA, USA
- Department of Chemistry & Biochemistry, Saint Joseph's University, Philadelphia, PA, USA
| | - Ken Mackie
- Psychological and Brain Sciences Campus, Indiana University, Bloomington, IN, USA
| | - Charles N McEwen
- Research and Development, MSTM, LLC, Philadelphia, PA, USA
- Department of Chemistry & Biochemistry, Saint Joseph's University, Philadelphia, PA, USA
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Trimpin S. A tutorial: Laserspray ionization and related laser-based ionization methods for use in mass spectrometry. MASS SPECTROMETRY REVIEWS 2023; 42:2234-2267. [PMID: 37462443 DOI: 10.1002/mas.21762] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2021] [Revised: 09/30/2021] [Accepted: 11/15/2021] [Indexed: 08/09/2023]
Abstract
This Tutorial is to provide a summary of parameters useful for successful outcomes of laserspray ionization (LSI) and related methods that employ a laser to ablate a matrix:analyte sample to produce highly charged ions. In these methods the purpose of the laser is to transfer matrix-analyte clusters into the gas phase. Ions are hypothesized to be produced by a thermal process where emitted matrix:analyte gas-phase particles/clusters are charged and loss of matrix from the charged particles leads to release of the analyte ions into the gas phase. The thermal energy responsible for the charge-separation process is relatively low and not necessarily supplied by the laser; a heated inlet tube linking atmospheric pressure with the first vacuum stage of a mass spectrometer is sufficient. The inlet becomes the "ion source", and inter alia, pressure, temperature, and the matrix, which can be a solid, liquid, or combinations, become critical parameters. Injecting matrix:analyte into a heated inlet tube using laser ablation, a shockwave, or simply tapping, all produce the similar mass spectra. Applications are provided that showcase new opportunities in the field of mass spectrometry.
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Affiliation(s)
- Sarah Trimpin
- Department of Chemistry, Wayne State University, Detroit, Michigan, USA
- MSTM, LLC, Newark, Delaware, USA
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Surface-sampling mass spectrometry to study proteins and protein complexes. Essays Biochem 2023; 67:229-241. [PMID: 36748325 PMCID: PMC10070487 DOI: 10.1042/ebc20220191] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Revised: 01/03/2023] [Accepted: 01/05/2023] [Indexed: 02/08/2023]
Abstract
This review aims to summarise the current capabilities of surface mass spectrometry (MS) approaches that offer intact protein analysis, and that of non-covalent complexes. Protein analysis is largely achieved via matrix-assisted laser desorption/ionisation (MALDI), which is in itself a surface analysis approach or solvent-based electrospray ionisation (ESI). Several surface sampling approaches have been developed based on ESI, and those that have been used for intact protein analysis will be discussed below. The extent of protein coverage, top-down elucidation, and probing of protein structure for native proteins and non-covalent complexes will be discussed for each approach. Strategies for improving protein analysis, ranging from sample preparation, and sampling methods to instrument modifications and the inclusion of ion mobility separation in the workflow will also be discussed. The relative benefits and drawbacks of each approach will be summarised, providing an overview of current capabilities.
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Pursell ME, Sharif D, DeBastiani A, Li C, Majuta S, Li P, Valentine SJ. Development of cVSSI-APCI for the Improvement of Ion Suppression and Matrix Effects in Complex Mixtures. Anal Chem 2022; 94:9226-9233. [PMID: 35729103 PMCID: PMC9260805 DOI: 10.1021/acs.analchem.1c05136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The new ionization technique termed vibrating sharp-edge spray ionization (cVSSI) has been coupled with corona discharge to investigate atmospheric pressure chemical ionization (APCI) capabilities. The optimized source was evaluated for its ability to enhance ion signal intensity, overcome matrix effects, and limit ion suppression. The results have been compared with state-of-the-art ESI source performance as well as a new APCI-like source. In methanol, the ion signal intensity increased 10-fold and >10-fold for cocaine and the suppressed analytes, respectively. The ability to overcome ion suppression was improved from 2-fold to 16-fold for theophylline and vitamin D2, respectively. For aqueous samples, ion signal levels increased by two orders of magnitude for all analytes. In both solvent systems, the signal-to-noise ratios also increased for all suppressed analytes. One example of the characterization of low-ionizing (by ESI or cVSSI alone) species in the presence of high-ionizing species by direct analysis from a cotton swab is presented. The work is discussed with respect to the advantages of cVSSI-APCI for direct, in situ, and field analyses.
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Affiliation(s)
- Madison E. Pursell
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, WV 26506
| | - Daud Sharif
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, WV 26506
| | - Anthony DeBastiani
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, WV 26506
| | - Chong Li
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, WV 26506
| | - Sandra Majuta
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, WV 26506
| | - Peng Li
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, WV 26506
| | - Stephen J. Valentine
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, WV 26506
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DeLaney K, Phetsanthad A, Li L. ADVANCES IN HIGH-RESOLUTION MALDI MASS SPECTROMETRY FOR NEUROBIOLOGY. MASS SPECTROMETRY REVIEWS 2022; 41:194-214. [PMID: 33165982 PMCID: PMC8106695 DOI: 10.1002/mas.21661] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2020] [Accepted: 09/13/2020] [Indexed: 05/08/2023]
Abstract
Research in the field of neurobiology and neurochemistry has seen a rapid expansion in the last several years due to advances in technologies and instrumentation, facilitating the detection of biomolecules critical to the complex signaling of neurons. Part of this growth has been due to the development and implementation of high-resolution Fourier transform (FT) mass spectrometry (MS), as is offered by FT ion cyclotron resonance (FTICR) and Orbitrap mass analyzers, which improves the accuracy of measurements and helps resolve the complex biological mixtures often analyzed in the nervous system. The coupling of matrix-assisted laser desorption/ionization (MALDI) with high-resolution MS has drastically expanded the information that can be obtained with these complex samples. This review discusses notable technical developments in MALDI-FTICR and MALDI-Orbitrap platforms and their applications toward molecules in the nervous system, including sequence elucidation and profiling with de novo sequencing, analysis of post-translational modifications, in situ analysis, key advances in sample preparation and handling, quantitation, and imaging. Notable novel applications are also discussed to highlight key developments critical to advancing our understanding of neurobiology and providing insight into the exciting future of this field. © 2020 John Wiley & Sons Ltd. Mass Spec Rev.
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Affiliation(s)
- Kellen DeLaney
- Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, WI 53706, USA
| | - Ashley Phetsanthad
- Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, WI 53706, USA
| | - Lingjun Li
- Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, WI 53706, USA
- School of Pharmacy, University of Wisconsin-Madison, 777 Highland Avenue, Madison, WI 53705, USA
- To whom correspondence should be addressed. , Phone: (608) 265-8491, Fax: (608) 262-5345., Mailing Address: 5125 Rennebohm Hall, 777 Highland Avenue, Madison, WI 53706
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Jayasundara K, Li C, DeBastiani A, Sharif D, Li P, Valentine SJ. Physicochemical Property Correlations with Ionization Efficiency in Capillary Vibrating Sharp-Edge Spray Ionization (cVSSI). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2021; 32:84-94. [PMID: 32856909 PMCID: PMC8130659 DOI: 10.1021/jasms.0c00100] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
The relative contributions to ionization efficiency by three molecular chemical properties have been examined for field-free and field-enabled capillary vibrating sharp-edge spray ionization (cVSSI) using mass spectrometry (MS) analysis. Ion intensities have been recorded for model compounds under each operational ionization mode as well as for aqueous and nonaqueous (methanol) solvent systems. Multiple regression analysis suggests that for field-free cVSSI, ion intensity is mostly associated with the log of the base dissociation constant (pKb) and proton affinity (PA) for both aqueous and methanol solutions. Comparatively, for field-enabled cVSSI using aqueous solutions, the dominant factor correlated with ion intensity is the log of the partition coefficient (log P). To a lesser degree, this is observed for methanol solutions as well. For ESI, pKb is the dominant factor associated with ion signal levels from methanol and aqueous solutions. These results are supported by studies conducted on two different mass spectrometers employing different cVSSI emitter tips. The relationship of ion intensity and pKb in ESI is supported by multiple studies; however, the shift to other chemical properties with the addition of cVSSI suggests the possibility that a different (or combinations of) ionization mechanism(s) may be operative for these ionization modes. These results are briefly considered in light of the different ESI mechanisms.
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Affiliation(s)
| | | | | | | | - Peng Li
- To whom correspondence should be addressed: , and .
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Trimpin S, Marshall DD, Karki S, Madarshahian S, Hoang K, Meher AK, Pophristic M, Richards AL, Lietz CB, Fischer JL, Elia EA, Wang B, Pagnotti VS, Lutomski CA, El-Baba TJ, Lu IC, Wager-Miller J, Mackie K, McEwen CN, Inutan ED. An overview of biological applications and fundamentals of new inlet and vacuum ionization technologies. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2021; 35 Suppl 1:e8829. [PMID: 32402102 DOI: 10.1002/rcm.8829] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2020] [Revised: 05/01/2020] [Accepted: 05/10/2020] [Indexed: 06/11/2023]
Abstract
RATIONALE The developments of new ionization technologies based on processes previously unknown to mass spectrometry (MS) have gained significant momentum. Herein we address the importance of understanding these unique ionization processes, demonstrate the new capabilities currently unmet by other methods, and outline their considerable analytical potential. METHODS The inlet and vacuum ionization methods of solvent-assisted ionization (SAI), matrix-assisted ionization (MAI), and laserspray ionization can be used with commercial and dedicated ion sources producing ions from atmospheric or vacuum conditions for analyses of a variety of materials including drugs, lipids, and proteins introduced from well plates, pipet tips and plate surfaces with and without a laser using solid or solvent matrices. Mass spectrometers from various vendors are employed. RESULTS Results are presented highlighting strengths relative to ionization methods of electrospray ionization (ESI) and matrix-assisted laser desorption/ionization. We demonstrate the utility of multi-ionization platforms encompassing MAI, SAI, and ESI and enabling detection of what otherwise is missed, especially when directly analyzing mixtures. Unmatched robustness is achieved with dedicated vacuum MAI sources with mechanical introduction of the sample to the sub-atmospheric pressure (vacuum MAI). Simplicity and use of a wide array of matrices are attained using a conduit (inlet ionization), preferably heated, with sample introduction from atmospheric pressure. Tissue, whole blood, urine (including mouse, chicken, and human origin), bacteria strains and chemical on-probe reactions are analyzed directly and, especially in the case of vacuum ionization, without concern of carryover or instrument contamination. CONCLUSIONS Examples are provided highlighting the exceptional analytical capabilities associated with the novel ionization processes in MS that reduce operational complexity while increasing speed and robustness, achieving mass spectra with low background for improved sensitivity, suggesting the potential of this simple ionization technology to drive MS into areas currently underserved, such as clinical and medical applications.
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Affiliation(s)
- Sarah Trimpin
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
- MS™, LLC, Newark, DE, 19711, USA
| | - Darrell D Marshall
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
- MS™, LLC, Newark, DE, 19711, USA
| | - Santosh Karki
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
- MS™, LLC, Newark, DE, 19711, USA
| | | | - Khoa Hoang
- MS™, LLC, Newark, DE, 19711, USA
- University of the Sciences, Philadelphia, PA, 19104, USA
| | - Anil K Meher
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
- MS™, LLC, Newark, DE, 19711, USA
| | - Milan Pophristic
- MS™, LLC, Newark, DE, 19711, USA
- University of the Sciences, Philadelphia, PA, 19104, USA
| | - Alicia L Richards
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
| | | | - Joshua L Fischer
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
| | - Efstathios A Elia
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
| | - Beixi Wang
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
| | | | - Corinne A Lutomski
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
| | - Tarick J El-Baba
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
| | - I-Chung Lu
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
| | - James Wager-Miller
- Gill Center for Biomolecular Science and Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, 47405, USA
| | - Ken Mackie
- Gill Center for Biomolecular Science and Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, 47405, USA
| | - Charles N McEwen
- MS™, LLC, Newark, DE, 19711, USA
- University of the Sciences, Philadelphia, PA, 19104, USA
| | - Ellen D Inutan
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
- MS™, LLC, Newark, DE, 19711, USA
- Mindanao State University Iligan Institute of Technology, Iligan City, 9200, Philippines
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Inutan ED, Jarois DR, Lietz CB, El-Baba TJ, Elia EA, Karki S, Sampat AAS, Foley CD, Clemmer DE, Trimpin S. Comparison of gaseous ubiquitin ion structures obtained from a solid and solution matrix using ion mobility spectrometry/mass spectrometry. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2021; 35 Suppl 1:e8793. [PMID: 32220130 DOI: 10.1002/rcm.8793] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2019] [Revised: 03/24/2020] [Accepted: 03/24/2020] [Indexed: 06/10/2023]
Abstract
RATIONALE Examining surface protein conformations, and especially achieving this with spatial resolution, is an important goal. The recently discovered ionization processes offer spatial-resolution measurements similar to matrix-assisted laser desorption/ionization (MALDI) and produce charge states similar to electrospray ionization (ESI) extending higher-mass protein applications directly from surfaces on high-performance mass spectrometers. Studying a well-interrogated protein by ion mobility spectrometry-mass spectrometry (IMS-MS) to access effects on structures using a solid vs. solvent matrix may provide insights. METHODS Ubiquitin was studied by IMS-MS using new ionization processes with commercial and homebuilt ion sources and instruments (Waters SYNAPT G2(S)) and homebuilt 2 m drift-tube instrument; MS™ sources). Mass-to-charge and drift-time (td )-measurements are compared for ubiquitin ions obtained by inlet and vacuum ionization using laserspray ionization (LSI), matrix- (MAI) and solvent-assisted ionization (SAI), respectively, and compared with those from ESI under conditions that are most comparable. RESULTS Using the same solution conditions with SYNAPT G2(S) instruments, td -distributions of various ubiquitin charge states from MAI, LSI, and SAI are similar to those from ESI using a variety of solvents, matrices, extraction voltages, a laser, and temperature only, showing subtle differences in more compact features within the elongated distribution of structures. However, on a homebuilt drift-tube instrument, within the elongated distribution of structures, both similar and different td -distributions are observed for ubiquitin ions obtained by MAI and ESI. MAI-generated ions are frequently narrower in their td -distributions. CONCLUSIONS Direct comparisons between ESI and the new ionization methods operational directly from surfaces suggest that the protein in its solution structure prior to exposure to the ionization event is either captured (frozen out) at the time of crystallization, or that the protein in the solid matrix is associated with sufficient solvent to maintain the solution structure, or, alternatively, that the observed structures are those related to what occurs in the gas phase with ESI- or MAI-generated ions and not with the solution structures.
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Affiliation(s)
- Ellen D Inutan
- MSTM, LLC, Newark, DE, USA
- Department of Chemistry, Wayne State University, Detroit, MI, USA
- Mindanao State University-Iligan Institute of Technology, Iligan City, Philippines
| | - Dean R Jarois
- Department of Chemistry, Wayne State University, Detroit, MI, USA
| | | | - Tarick J El-Baba
- Department of Chemistry, Indiana University, Bloomington, IN, USA
| | | | - Santosh Karki
- Department of Chemistry, Wayne State University, Detroit, MI, USA
| | | | - Casey D Foley
- Department of Chemistry, Wayne State University, Detroit, MI, USA
| | - David E Clemmer
- Department of Chemistry, Indiana University, Bloomington, IN, USA
| | - Sarah Trimpin
- MSTM, LLC, Newark, DE, USA
- Department of Chemistry, Wayne State University, Detroit, MI, USA
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Hale OJ, Ryumin P, Brown JM, Morris M, Cramer R. Production and analysis of multiply charged negative ions by liquid atmospheric pressure matrix-assisted laser desorption/ionization mass spectrometry. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2021; 35 Suppl 1:e8246. [PMID: 30067883 PMCID: PMC7757204 DOI: 10.1002/rcm.8246] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2018] [Revised: 07/13/2018] [Accepted: 07/17/2018] [Indexed: 05/08/2023]
Abstract
RATIONALE Liquid atmospheric pressure matrix-assisted laser desorption/ionisation (AP-MALDI) has been shown to enable the production of electrospray ionisation (ESI)-like multiply charged analyte ions with little sample consumption and long-lasting, robust ion yield for sensitive analysis by mass spectrometry (MS). Previous reports have focused on positive ion production. Here, we report an initial optimisation of liquid AP-MALDI for ESI-like negative ion production and its application to the analysis of peptides/proteins, DNA and lipids. METHODS The instrumentation employed for this study is identical to that of earlier liquid AP-MALDI MS studies for positive analyte ion production with a simple non-commercial AP ion source that is attached to a Waters Synapt G2-Si mass spectrometer and incorporates a heated ion transfer tube. The preparation of liquid MALDI matrices is similar to positive ion mode analysis but has been adjusted for negative ion mode by changing the chromophore to 3-aminoquinoline and 9-aminoacridine for further improvements. RESULTS For DNA, liquid AP-MALDI MS analysis benefited from switching to 9-aminoacridine-based MALDI samples and the negative ion mode, increasing the number of charges by up to a factor of 2 and the analyte ion signal intensities by more than 10-fold compared with the positive ion mode. The limit of detection was recorded at around 10 fmol for ATGCAT. For lipids, negative ion mode analysis provided a fully orthogonal set of detected lipids. CONCLUSIONS Negative ion mode is a sensitive alternative to positive ion mode in liquid AP-MALDI MS analysis. In particular, the analysis of lipids and DNA benefited from the complementarity of the detected lipid species and the vastly greater DNA ion signal intensities in negative ion mode.
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Affiliation(s)
- Oliver J Hale
- Department of Chemistry, University of Reading, Whiteknights, Reading, RG6 6AD, UK
| | - Pavel Ryumin
- Department of Chemistry, University of Reading, Whiteknights, Reading, RG6 6AD, UK
| | - Jeffery M Brown
- Department of Chemistry, University of Reading, Whiteknights, Reading, RG6 6AD, UK
- Waters Corporation, Stamford Avenue, Wilmslow, SK9 4AX, UK
| | - Michael Morris
- Waters Corporation, Stamford Avenue, Wilmslow, SK9 4AX, UK
| | - Rainer Cramer
- Department of Chemistry, University of Reading, Whiteknights, Reading, RG6 6AD, UK
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Lee C, Inutan ED, Chen JL, Mukeku MM, Weidner SM, Trimpin S, Ni CK. Toward understanding the ionization mechanism of matrix-assisted ionization using mass spectrometry experiment and theory. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2021; 35 Suppl 1:e8382. [PMID: 30623523 DOI: 10.1002/rcm.8382] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2018] [Accepted: 01/03/2019] [Indexed: 06/09/2023]
Abstract
RATIONALE Matrix-assisted ionization (MAI) mass spectrometry does not require voltages, a laser beam, or added heat to initiate ionization, but it is strongly dependent on the choice of matrix and the vacuum conditions. High charge state distributions of nonvolatile analyte ions produced by MAI suggest that the ionization mechanism may be similar to that of electrospray ionization (ESI), but different from matrix-assisted laser desorption/ionization (MALDI). While significant information is available for MAI using mass spectrometers operating at atmospheric and intermediate pressure, little is known about the mechanism at high vacuum. METHODS Eleven MAI matrices were studied on a high-vacuum time-of-flight (TOF) mass spectrometer using a 266 nm pulsed laser beam under otherwise typical MALDI conditions. Detailed comparisons with the commonly used MALDI matrices and theoretical prediction were made for 3-nitrobenzonitrile (3-NBN), which is the only MAI matrix that works well in high vacuum when irradiated with a laser. RESULTS Screening of MAI matrices with good absorption at 266 nm but with various degrees of volatility and laser energies suggests that volatility and absorption at the laser wavelength may be necessary, but not sufficient, criteria to explain the formation of multiply charged analyte ions. 3-NBN produces intact, highly charged ions of nonvolatile analytes in high-vacuum TOF with the use of a laser, demonstrating that ESI-like ions can be produced in high vacuum. Theoretical calculations and mass spectra suggest that thermally induced proton transfer, which is the major ionization mechanism in MALDI, is not important with the 3-NBN matrix at 266 nm laser wavelength. 3-NBN:analyte crystal morphology is, however, important in ion generation in high vacuum. CONCLUSIONS The 3-NBN MAI matrix produces intact, highly charged ions of nonvolatile compounds in high-vacuum TOF mass spectrometers with the aid of ablation and/or heating by laser irradiation, and shows a different ionization mechanism from that of typical MALDI matrices.
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Affiliation(s)
- Chuping Lee
- Department of Chemistry, Wayne State University, Detroit, MI, USA
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei, Taiwan
| | - Ellen D Inutan
- Department of Chemistry, Mindanao State University-Iligan Institute of Technology, Iligan City, Philippines
| | - Jien Lian Chen
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei, Taiwan
| | - Mutanu M Mukeku
- Department of Chemistry, Wayne State University, Detroit, MI, USA
| | - Steffen M Weidner
- Bundesanstalt für Materialforschung und-prüfung, Richard-Willstätter-Straße 11, 12489, Berlin, Germany
| | - Sarah Trimpin
- Department of Chemistry, Wayne State University, Detroit, MI, USA
| | - Chi-Kung Ni
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei, Taiwan
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Abstract
Analysis of intact proteins by native mass spectrometry has emerged as a powerful tool for obtaining insight into subunit diversity, post-translational modifications, stoichiometry, structural arrangement, stability, and overall architecture. Typically, such an analysis is performed following protein purification procedures, which are time consuming, costly, and labor intensive. As this technology continues to move forward, advances in sample handling and instrumentation have enabled the investigation of intact proteins in situ and in crude samples, offering rapid analysis and improved conservation of the biological context. This emerging field, which involves various ion source platforms such as matrix-assisted laser desorption ionization (MALDI) and electrospray ionization (ESI) for both spatial imaging and solution-based analysis, is expected to impact many scientific fields, including biotechnology, pharmaceuticals, and clinical sciences. In this Perspective, we discuss the information that can be retrieved by such experiments as well as the current advantages and technical challenges associated with the different sampling strategies. Furthermore, we present future directions of these MS-based methods, including current limitations and efforts that should be made to make these approaches more accessible. Considering the vast progress we have witnessed in recent years, we anticipate that the advent of further innovations enabling minimal handling of MS samples will make this field more robust, user friendly, and widespread.
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Affiliation(s)
- Shay Vimer
- Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Gili Ben-Nissan
- Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Michal Sharon
- Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel
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Banstola B, Murray KK. Sublimation Electrification of Organic Compounds. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2020; 31:888-893. [PMID: 32233384 DOI: 10.1021/jasms.9b00124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The electrification of crystalline deposits of organic compounds under high vacuum was measured and quantified. A group of compounds that produce multiply charged ions by matrix-assisted ionization were deposited on a metal plate, and the current was amplified and recorded; the total charge was obtained by integration of the current. Signals of several hundred picoamperes were obtained within 10 s of the application of high vacuum and persisted for several minutes as the compounds sublimed. The magnitude and sign of the charge were matrix dependent and were affected by the presence of organic or mineral acid in the crystalline deposit, as well as by the application of an electric field. The observations are interpreted as surface electrification caused by the emission of small charged matrix particles during sublimation, with ionic charge carriers comprising protons and hydroxide ions.
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Affiliation(s)
- Bijay Banstola
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | - Kermit K Murray
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
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14
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Trimpin S. Novel ionization processes for use in mass spectrometry: 'Squeezing' nonvolatile analyte ions from crystals and droplets. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2019; 33 Suppl 3:96-120. [PMID: 30138957 DOI: 10.1002/rcm.8269] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2018] [Revised: 07/29/2018] [Accepted: 08/15/2018] [Indexed: 05/25/2023]
Abstract
Together with my group and collaborators, I have been fortunate to have had a key role in the discovery of new ionization processes that we developed into new flexible, sensitive, rapid, reliable, and robust ionization technologies and methods for use in mass spectrometry (MS). Our current research is focused on how best to understand, improve, and use these novel ionization processes which convert volatile and nonvolatile compounds from solids or liquids into gas-phase ions for analysis by MS using e.g. mass-selected fragmentation and ion mobility spectrometry to provide reproducible, accurate, and improved mass and drift time resolution. In my view, the apex was the discovery of vacuum matrix-assisted ionization (vMAI) in 2012 on an intermediate pressure matrix-assisted laser desorption/ionization (MALDI) source without the use of a laser, high voltages, or any other added energy. Only exposure of the matrix:analyte to the sub-atmospheric pressure of the mass spectrometer was necessary to initiate ionization. These findings were initially rejected by three different scientific journals, with comments related to 'how can this work?', 'where do the charges come from?', and 'it is not analytically useful'. Meanwhile, we and others have demonstrated analytical utility without a complete understanding of the mechanism. In reality, MALDI and electrospray ionization are widely used in science and their mechanisms are still controversially discussed despite use and optimization of now 30 years. This Perspective covers the applications and mechanistic aspects of the novel ionization processes for use in MS that guided us in instrument developments, and provides our perspective on how they relate to traditional ionization processes.
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Affiliation(s)
- Sarah Trimpin
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
- Cardiovascular Research Institute, Wayne State University School of Medicine, Detroit, MI, 48201, USA
- MSTM, LLC, Newark, DE, 19711, USA
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15
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GUO XY, HUANG XM, ZHAI JF, BAI H, LI XX, MA XX, MA Q. Research Advances in Ambient Ionization and Miniature Mass Spectrometry. CHINESE JOURNAL OF ANALYTICAL CHEMISTRY 2019. [DOI: 10.1016/s1872-2040(19)61145-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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16
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Zhai Y, Liu S, Gao L, Hu L, Xu W. Direct Biological Sample Analyses by Laserspray Ionization Miniature Mass Spectrometry. Anal Chem 2018; 90:5696-5702. [PMID: 29562126 DOI: 10.1021/acs.analchem.7b05366] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
With improved performances, miniature mass spectrometers are becoming suitable for more practical applications. At the same time, the coupling of an approximate ionization source is essential in terms of minimizing sample preparation and broadening the range of samples that could be analyzed. In this study, an atmospheric pressure laserspray ionization (AP-LSI) source was coupled with our home developed miniature ion trap mass spectrometer. The whole system is compact in size, and biological samples could be directly analyzed with minimum sample preparation. Direct detections of peptides, proteins, drugs in whole blood, and urine could be achieved with high sensitivity. The analyses of tissue sections were demonstrated, and different regions in a tissue section could be differentiated based on their lipid profiles. Results suggest that the coupling of AP-LSI with miniature mass spectrometer is a powerful technique, which could potentially benefit target molecule analysis in biological and medical applications.
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Affiliation(s)
- Yanbing Zhai
- School of Life Science , Beijing Institute of Technology , Beijing 100081 , China
| | - Siyu Liu
- School of Life Science , Beijing Institute of Technology , Beijing 100081 , China
| | - Lijuan Gao
- Beijing Engineering Research Center of Food Safety Analysis, Beijing Center for Physical and Chemical Analysis , Beijing , 100089 , China
| | - Lili Hu
- School of Life Science , Beijing Institute of Technology , Beijing 100081 , China
| | - Wei Xu
- School of Life Science , Beijing Institute of Technology , Beijing 100081 , China
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17
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Lu Y, Pieterse CL, Robertson WD, Miller RJD. Soft Picosecond Infrared Laser Extraction of Highly Charged Proteins and Peptides from Bulk Liquid Water for Mass Spectrometry. Anal Chem 2018. [PMID: 29522677 DOI: 10.1021/acs.analchem.7b04306] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We report the soft laser extraction and production of highly charged peptide and protein ions for mass spectrometry directly from bulk liquid water at atmospheric pressure and room temperature, using picosecond infrared laser ablation. Stable ion signal from singly charged small molecules, as well as highly charged biomolecular ions, from aqueous solutions at low laser pulse fluence (∼0.3 J cm-2) is demonstrated. Sampling via single picosecond laser pulses is shown to extract less than 27 pL of volume from the sample, producing highly charged peptide and protein ions for mass spectrometry detection. The ablation and ion generation is demonstrated to be soft in nature, producing natively folded proteins ions under sample conditions described for native mass spectrometry. The method provides laser-based sampling flexibility, precision and control with highly charged ion production directly from water at low and near neutral pH. This approach does not require an additional ionization device or high voltage applied directly to the sample.
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Affiliation(s)
- Yinfei Lu
- Max Planck Institute for the Structure and Dynamics of Matter , Luruper Chaussee 149 , Hamburg 22761 , Germany
| | - Cornelius L Pieterse
- Max Planck Institute for the Structure and Dynamics of Matter , Luruper Chaussee 149 , Hamburg 22761 , Germany
| | - Wesley D Robertson
- Max Planck Institute for the Structure and Dynamics of Matter , Luruper Chaussee 149 , Hamburg 22761 , Germany
| | - R J Dwayne Miller
- Max Planck Institute for the Structure and Dynamics of Matter , Luruper Chaussee 149 , Hamburg 22761 , Germany
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18
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Trimpin S, Lee C, Weidner SM, El‐Baba TJ, Lutomski CA, Inutan ED, Foley CD, Ni C, McEwen CN. Unprecedented Ionization Processes in Mass Spectrometry Provide Missing Link between ESI and MALDI. Chemphyschem 2018; 19:581-589. [DOI: 10.1002/cphc.201701246] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2017] [Revised: 12/01/2017] [Indexed: 01/07/2023]
Affiliation(s)
- Sarah Trimpin
- Department of Chemistry Wayne State University 5101 Cass Ave Detroit MI 48202 USA
| | - Chuping Lee
- Institute of Atomic and Molecular Sciences Academia Sinica Taipei Taiwan
| | - Steffen M. Weidner
- Federal Institute for Materials Research and Testing (BAM) Richard-Willstätter-Strasse 11 12489 Berlin Germany
| | - Tarick J. El‐Baba
- Department of Chemistry Wayne State University 5101 Cass Ave Detroit MI 48202 USA
| | - Corinne A. Lutomski
- Department of Chemistry Wayne State University 5101 Cass Ave Detroit MI 48202 USA
| | - Ellen D. Inutan
- Department of Chemistry Wayne State University 5101 Cass Ave Detroit MI 48202 USA
| | - Casey D. Foley
- Department of Chemistry Wayne State University 5101 Cass Ave Detroit MI 48202 USA
| | - Chi‐Kung Ni
- Institute of Atomic and Molecular Sciences Academia Sinica Taipei Taiwan
| | - Charles N. McEwen
- Department of Chemistry & Biochemistry University of the Sciences Philadelphia PA 19104 USA
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19
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Ryumin P, Cramer R. The composition of liquid atmospheric pressure matrix-assisted laser desorption/ionization matrices and its effect on ionization in mass spectrometry. Anal Chim Acta 2018; 1013:43-53. [PMID: 29501091 DOI: 10.1016/j.aca.2018.01.070] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2017] [Revised: 01/26/2018] [Accepted: 01/31/2018] [Indexed: 01/06/2023]
Abstract
New liquid atmospheric pressure (AP) matrix-assisted laser desorption/ionization (MALDI) matrices that produce predominantly multiply charged ions have been developed and evaluated with respect to their performance for peptide and protein analysis by mass spectrometry (MS). Both the chromophore and the viscous support liquid in these matrices were optimized for highest MS signal intensity, S/N values and maximum charge state. The best performance in both protein and peptide analysis was achieved employing light diols as matrix support liquids (e.g. ethylene glycol and propylene glycol). Investigating the influence of the chromophore, it was found that 2,5-dihydroxybenzoic acid resulted in a higher analyte ion signal intensity for the analysis of small peptides; however, larger molecules (>17 kDa) were undetectable. For larger molecules, a sample preparation based on α-cyano-4-hydroxycinnammic acid as the chromophore was developed and multiply protonated analytes with charge states of more than 50 were detected. Thus, for the first time it was possible to detect with MALDI MS proteins as large as ∼80 kDa with a high number of charge states, i.e. m/z values below 2000. Systematic investigations of various matrix support liquids have revealed a linear dependency between laser threshold energy and surface tension of the liquid MALDI sample.
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Affiliation(s)
- Pavel Ryumin
- Department of Chemistry, University of Reading, Whiteknights, Reading, RG6 6AD, United Kingdom
| | - Rainer Cramer
- Department of Chemistry, University of Reading, Whiteknights, Reading, RG6 6AD, United Kingdom.
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20
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Trimpin S, Lu IC, Rauschenbach S, Hoang K, Wang B, Chubatyi ND, Zhang WJ, Inutan ED, Pophristic M, Sidorenko A, McEwen CN. Spontaneous Charge Separation and Sublimation Processes are Ubiquitous in Nature and in Ionization Processes in Mass Spectrometry. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2018; 29:304-315. [PMID: 29080207 DOI: 10.1007/s13361-017-1788-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2017] [Revised: 08/08/2017] [Accepted: 08/14/2017] [Indexed: 06/07/2023]
Abstract
Ionization processes have been discovered by which small and large as well as volatile and nonvolatile compounds are converted to gas-phase ions when associated with a matrix and exposed to sub-atmospheric pressure. Here, we discuss experiments further defining these simple and unexpected processes. Charge separation is found to be a common process for small molecule chemicals, solids and liquids, passed through an inlet tube from a higher to a lower pressure region, with and without heat applied. This charge separation process produces positively- and negatively-charged particles with widely different efficiencies depending on the compound and its physical state. Circumstantial evidence is presented suggesting that in the new ionization process, charged particles carry analyte into the gas phase, and desolvation of these particles produce the bare ions similar to electrospray ionization, except that solid particles appear likely to be involved. This mechanistic proposition is in agreement with previous theoretical work related to ion emission from ice. Graphical Abstract ᅟ.
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Affiliation(s)
- Sarah Trimpin
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA.
- MSTM, LLC, Newark, DE, 19711, USA.
| | - I-Chung Lu
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
| | - Stephan Rauschenbach
- Electrospray Ion Beam Deposition Laboratory, Nanoscale Science Department, Max-Planck-Institute for Solid State Research, DE-70569, Stuttgart, Germany
| | - Khoa Hoang
- Department of Chemistry and Biochemistry, University of the Sciences, Philadelphia, PA, 19104, USA
| | - Beixi Wang
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
| | - Nicholas D Chubatyi
- Department of Chemistry and Biochemistry, University of the Sciences, Philadelphia, PA, 19104, USA
| | - Wen-Jing Zhang
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
| | - Ellen D Inutan
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
- MSTM, LLC, Newark, DE, 19711, USA
| | - Milan Pophristic
- MSTM, LLC, Newark, DE, 19711, USA
- Department of Chemistry and Biochemistry, University of the Sciences, Philadelphia, PA, 19104, USA
| | - Alexander Sidorenko
- Department of Chemistry and Biochemistry, University of the Sciences, Philadelphia, PA, 19104, USA
| | - Charles N McEwen
- MSTM, LLC, Newark, DE, 19711, USA
- Department of Chemistry and Biochemistry, University of the Sciences, Philadelphia, PA, 19104, USA
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21
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Chen B, OuYang C, Tian Z, Xu M, Li L. A high resolution atmospheric pressure matrix-assisted laser desorption/ionization-quadrupole-orbitrap MS platform enables in situ analysis of biomolecules by multi-mode ionization and acquisition. Anal Chim Acta 2018; 1007:16-25. [PMID: 29405984 DOI: 10.1016/j.aca.2017.12.045] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2017] [Revised: 12/25/2017] [Accepted: 12/29/2017] [Indexed: 11/28/2022]
Abstract
Introduced in 2000, atmospheric pressure (AP)/matrix-assisted laser desorption/ionization (MALDI) has attracted substantial attention in the mass spectrometry community due to its ease of sample introduction and handling, interchangeability with ESI source and capability of analyzing volatile species. In this study, an AP/MALDI source with ultra-high spatial resolution was coupled to a Q Exactive HF orbitrap mass spectrometer for high resolution in situ analysis by MALDI, laserspray ionization (LSI) and matrix assisted ionization (MAI) without instrument modification. LSI and MAI generated multiply charged ions, which expanded the mass detection range and improved fragmentation efficiency. Full MS, targeted MS/MS, data dependent acquisition (DDA) and parallel reaction monitoring (PRM) acquisitions were performed on peptide and protein standards, tissue extracts and tissue sections for in depth characterization of various biomolecules. High resolution full MS and MS/MS images were obtained from crustacean and rat tissues with pixel size less than 30 μm. Overall, AP/MALDI-Q-Orbitrap is a fast scanning instrument that is capable of performing multiple types of ionization and multiple acquisition modes without instrument modification. This instrument platform provides an attractive alternative to other high resolution MALDI instruments.
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Affiliation(s)
- Bingming Chen
- School of Pharmacy, University of Wisconsin-Madison, Madison, WI, 53705, United States
| | - Chuanzi OuYang
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, 53705, United States
| | - Zichuan Tian
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, 53705, United States
| | - Meng Xu
- Department of Biochemistry, University of Wisconsin-Madison, Madison, WI, 53705, United States
| | - Lingjun Li
- School of Pharmacy, University of Wisconsin-Madison, Madison, WI, 53705, United States; Department of Chemistry, University of Wisconsin-Madison, Madison, WI, 53705, United States.
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22
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Wu ML, Chen TY, Chen YC, Chen YC. Carbon Fiber Ionization Mass Spectrometry for the Analysis of Analytes in Vapor, Liquid, and Solid Phases. Anal Chem 2017; 89:13458-13465. [DOI: 10.1021/acs.analchem.7b03736] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Min-Li Wu
- Department of Applied Chemistry, National Chiao Tung University, Hsinchu 300, Taiwan
| | - Te-Yu Chen
- Department of Applied Chemistry, National Chiao Tung University, Hsinchu 300, Taiwan
| | - Yen-Chun Chen
- Department of Applied Chemistry, National Chiao Tung University, Hsinchu 300, Taiwan
| | - Yu-Chie Chen
- Department of Applied Chemistry, National Chiao Tung University, Hsinchu 300, Taiwan
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23
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Coupling matrix-assisted ionization with high resolution mass spectrometry and electron transfer dissociation to characterize intact proteins and post-translational modifications. Anal Bioanal Chem 2017; 410:1007-1017. [PMID: 28900710 DOI: 10.1007/s00216-017-0611-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2017] [Revised: 08/09/2017] [Accepted: 08/28/2017] [Indexed: 10/18/2022]
Abstract
Matrix-assisted ionization (MAI) is a recently developed ionization technique that produces multiply charged ions on either electrospray ionization (ESI) or matrix-assisted laser desorption/ionization (MALDI) platform without the need of high voltage or laser ablation. In this study, MAI has been coupled to a high resolution accurate mass (HRAM) hybrid instrument, the Orbitrap Elite mass spectrometer, with electron transfer dissociation (ETD) module for fast peptide and intact protein characterization. The softness of MAI process preserves labile post-translational modifications (PTM) and allows fragmentation and localization by ETD. Moreover, MAI on ESI platform allows rapid sample preparation and analysis (~ 1 min/sample) due to the easiness of sample introduction. It significantly improves the throughput compared to ESI direct infusion and MAI on MALDI platform, which usually takes more than 10 min/sample. Intact protein standards, protein mixtures, and neural tissue extracts have been characterized using this instrument platform with both full MS and MS/MS (CID, HCD, and ETD) analyses. Furthermore, the performances of ESI, MALDI, and MAI on both platforms have been tested to provide a systematic comparison among these techniques. With improved ETD performance and PTM analysis capabilities, we anticipate that the HRAM MAI-MS with ETD module will offer greater utilities in large molecule characterization with enhanced speed and coverage. These advancements will enable promising applications in bottom-up and top-down protein analyses. Graphical abstract Matrix-assisted ionization (MAI) for characterizing intact proteins and post-translational modifications with representative mass spectra from intact proteins.
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24
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Organic matrices, ionic liquids, and organic matrices@nanoparticles assisted laser desorption/ionization mass spectrometry. Trends Analyt Chem 2017. [DOI: 10.1016/j.trac.2017.01.012] [Citation(s) in RCA: 58] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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25
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Method development towards qualitative and semi-quantitative analysis of multiple pesticides from food surfaces and extracts by desorption electrospray ionization mass spectrometry as a preselective tool for food control. Anal Bioanal Chem 2016; 409:2107-2117. [DOI: 10.1007/s00216-016-0157-x] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2016] [Revised: 11/23/2016] [Accepted: 12/15/2016] [Indexed: 12/13/2022]
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26
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Trim PJ, Snel MF. Small molecule MALDI MS imaging: Current technologies and future challenges. Methods 2016; 104:127-41. [DOI: 10.1016/j.ymeth.2016.01.011] [Citation(s) in RCA: 56] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2015] [Revised: 01/19/2016] [Accepted: 01/21/2016] [Indexed: 11/25/2022] Open
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27
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Kiss A, Hopfgartner G. Laser-based methods for the analysis of low molecular weight compounds in biological matrices. Methods 2016; 104:142-53. [DOI: 10.1016/j.ymeth.2016.04.017] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2015] [Revised: 02/28/2016] [Accepted: 04/13/2016] [Indexed: 01/26/2023] Open
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28
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Marshall DD, Inutan ED, Wang B, Liu CW, Thawoos S, Wager-Miller J, Mackie K, Trimpin S. A broad-based study on hyphenating new ionization technologies with MS/MS for PTMs and tissue characterization. Proteomics 2016; 16:1695-706. [DOI: 10.1002/pmic.201500530] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2015] [Revised: 03/27/2016] [Accepted: 04/11/2016] [Indexed: 01/06/2023]
Affiliation(s)
| | - Ellen D. Inutan
- Department of Chemistry; Wayne State University; Detroit MI USA
| | - Beixi Wang
- Department of Chemistry; Wayne State University; Detroit MI USA
| | - Chih-Wei Liu
- Department of Chemistry; Wayne State University; Detroit MI USA
| | | | - James Wager-Miller
- Department of Psychological & Brain Sciences; Indiana University; Bloomington IN USA
| | - Ken Mackie
- Department of Psychological & Brain Sciences; Indiana University; Bloomington IN USA
| | - Sarah Trimpin
- Department of Chemistry; Wayne State University; Detroit MI USA
- Cardiovascular Research Institute; Wayne State University School of Medicine; Detroit MI USA
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29
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Chen B, Lietz CB, OuYang C, Zhong X, Xu M, Li L. Matrix-assisted ionization vacuum for protein detection, fragmentation and PTM analysis on a high resolution linear ion trap-orbitrap platform. Anal Chim Acta 2016; 916:52-9. [PMID: 27016438 DOI: 10.1016/j.aca.2016.02.018] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2016] [Accepted: 02/12/2016] [Indexed: 11/28/2022]
Abstract
Matrix-assisted ionization vacuum (MAIV) is a novel ionization technique that generates multiply charged ions in vacuum without the use of laser ablation or high voltage. MAIV can be achieved in intermediate-vacuum and high-vacuum matrix-assisted laser desorption/ionization (MALDI) sources and electrospray ionization (ESI) sources without instrument modification. Herein, we adapt MAIV onto the MALDI-LTQ-Orbitrap XL platform for biomolecule analysis. As an attractive alternative to MALDI for in solution and in situ analysis of biomolecules, MAIV coupling to high resolution and accurate mass (HRAM) MS instrument has successfully expanded the mass detection range and improved the fragmentation efficiency due to the generation of multiply charged ions. Additionally, the softness of MAIV enables potential application in labile post-translational modification (PTM) analysis. In this study, proteins as large as 18.7 kDa were detected with up to 18 charges; intact peptides with labile PTM were well preserved during the ionization process and characterized MS/MS; peptides and proteins in complex tissue samples were detected and identified both in liquid extracts and in situ. Moreover, we demonstrated that this method facilitates MS/MS analysis with improved fragmentation efficiency compared to MALDI-MS/MS.
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Affiliation(s)
- Bingming Chen
- School of Pharmacy, University of Wisconsin-Madison, Madison, WI, 53705, United States
| | - Christopher B Lietz
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, 53705, United States
| | - Chuanzi OuYang
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI, 53705, United States
| | - Xuefei Zhong
- School of Pharmacy, University of Wisconsin-Madison, Madison, WI, 53705, United States
| | - Meng Xu
- Department of Biochemistry, University of Wisconsin-Madison, Madison, WI, 53705, United States
| | - Lingjun Li
- School of Pharmacy, University of Wisconsin-Madison, Madison, WI, 53705, United States; Department of Chemistry, University of Wisconsin-Madison, Madison, WI, 53705, United States.
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30
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Trimpin S, Thawoos S, Foley CD, Woodall DW, Li J, Inutan ED, Stemmer PM. Rapid high mass resolution mass spectrometry using matrix-assisted ionization. Methods 2016; 104:63-8. [PMID: 26835606 DOI: 10.1016/j.ymeth.2016.01.019] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2015] [Accepted: 01/29/2016] [Indexed: 11/18/2022] Open
Abstract
Matrix-assisted ionization (MAI) is demonstrated to be a robust and sensitive analytical method capable of analyzing proteins such as cholera toxin B-subunit and pertussis toxin mutant from conditions containing relatively high amounts of inorganic salts, buffers, and preservatives without the need for prior sample clean-up or concentration. By circumventing some of the sample preparation steps, MAI simplifies and accelerates the analytical workflow for biological samples in complex media. The benefits of multiply charged ions characteristic of electrospray ionization (ESI) and the robustness of matrix-assisted laser desorption/ionization (MALDI) can be obtained from a single method, making it well suited for analysis of proteins and other biomolecules at ultra-high resolution as demonstrated on an Orbitrap Fusion where protein subunits were resolved for which MALDI-time-of-flight failed. MAI results are compared with those obtained with ESI, MALDI, and laserspray ionization methods and fundamental commonalities discussed.
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Affiliation(s)
- Sarah Trimpin
- Department of Chemistry, Wayne State University, Detroit, MI 48202, USA; Cardiovascular Research Institute, Wayne State University School of Medicine, Detroit, MI 48202, USA.
| | - Shameemah Thawoos
- Department of Chemistry, Wayne State University, Detroit, MI 48202, USA
| | - Casey D Foley
- Department of Chemistry, Wayne State University, Detroit, MI 48202, USA
| | - Daniel W Woodall
- Department of Chemistry, Wayne State University, Detroit, MI 48202, USA
| | - Jing Li
- Department of Chemistry, Wayne State University, Detroit, MI 48202, USA
| | - Ellen D Inutan
- Department of Chemistry, Wayne State University, Detroit, MI 48202, USA
| | - Paul M Stemmer
- Proteomics Core Facility, Institute of Environmental Health Sciences, Wayne State University, Detroit, MI 48202, USA
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31
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Ryumin P, Brown J, Morris M, Cramer R. Investigation and optimization of parameters affecting the multiply charged ion yield in AP-MALDI MS. Methods 2016; 104:11-20. [PMID: 26827934 DOI: 10.1016/j.ymeth.2016.01.015] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2015] [Revised: 01/25/2016] [Accepted: 01/25/2016] [Indexed: 10/22/2022] Open
Abstract
Liquid matrix-assisted laser desorption/ionization (MALDI) allows the generation of predominantly multiply charged ions in atmospheric pressure (AP) MALDI ion sources for mass spectrometry (MS) analysis. The charge state distribution of the generated ions and the efficiency of the ion source in generating such ions crucially depend on the desolvation regime of the MALDI plume after desorption in the AP-to-vacuum inlet. Both high temperature and a flow regime with increased residence time of the desorbed plume in the desolvation region promote the generation of multiply charged ions. Without such measures the application of an electric ion extraction field significantly increases the ion signal intensity of singly charged species while the detection of multiply charged species is less dependent on the extraction field. In general, optimization of high temperature application facilitates the predominant formation and detection of multiply charged compared to singly charged ion species. In this study an experimental set-up and optimization strategy is described for liquid AP-MALDI MS which improves the ionization efficiency of selected ion species up to 14 times. In combination with ion mobility separation, the method allows the detection of multiply charged peptide and protein ions for analyte solution concentrations as low as 2fmol/μL (0.5μL, i.e. 1fmol, deposited on the target) with very low sample consumption in the low nL-range.
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Affiliation(s)
- Pavel Ryumin
- Department of Chemistry, University of Reading, Whiteknights, Reading RG6 6AD, UK
| | - Jeffery Brown
- Department of Chemistry, University of Reading, Whiteknights, Reading RG6 6AD, UK; Waters Corporation, Stamford Avenue, Wilmslow SK9 4AX, UK
| | - Michael Morris
- Waters Corporation, Stamford Avenue, Wilmslow SK9 4AX, UK
| | - Rainer Cramer
- Department of Chemistry, University of Reading, Whiteknights, Reading RG6 6AD, UK.
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32
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Trimpin S. "Magic" Ionization Mass Spectrometry. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2016; 27:4-21. [PMID: 26486514 PMCID: PMC4686549 DOI: 10.1007/s13361-015-1253-4] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2015] [Revised: 08/05/2015] [Accepted: 08/12/2015] [Indexed: 05/11/2023]
Abstract
The systematic study of the temperature and pressure dependence of matrix-assisted ionization (MAI) led us to the discovery of the seemingly impossible, initially explained by some reviewers as either sleight of hand or the misinterpretation by an overzealous young scientist of results reported many years before and having little utility. The “magic” that we were attempting to report was that with matrix assistance, molecules, at least as large as bovine serum albumin (66 kDa), are lifted into the gas phase as multiply charged ions simply by exposure of the matrix:analyte sample to the vacuum of a mass spectrometer. Applied heat, a laser, or voltages are not necessary to achieve charge states and ion abundances only previously observed with electrospray ionization (ESI). The fundamentals of how solid phase volatile or nonvolatile compounds are converted to gas-phase ions without added energy currently involves speculation providing a great opportunity to rethink mechanistic understanding of ionization processes used in mass spectrometry. Improved understanding of the mechanism(s) of these processes and their connection to ESI and matrix-assisted laser desorption/ionization may provide opportunities to further develop new ionization strategies for traditional and yet unforeseen applications of mass spectrometry. This Critical Insights article covers developments leading to the discovery of a seemingly magic ionization process that is simple to use, fast, sensitive, robust, and can be directly applied to surface characterization using portable or high performance mass spectrometers.
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Affiliation(s)
- Sarah Trimpin
- />Department of Chemistry, Wayne State University, Detroit, MI 48202 USA
- />Cardiovascular Research Institute, Wayne State University School of Medicine, Detroit, MI 48201 USA
- />MSTM, LLC, Newark, DE 19711 USA
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Feenstra AD, O'Neill KC, Yagnik GB, Lee YJ. Organic–inorganic binary mixture matrix for comprehensive laser-desorption ionization mass spectrometric analysis and imaging of medium-size molecules including phospholipids, glycerolipids, and oligosaccharides. RSC Adv 2016. [DOI: 10.1039/c6ra20469d] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
A binary matrix of DHB and Fe3O4 NPs provides broad coverage for medium size metabolites.
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Affiliation(s)
- Adam D. Feenstra
- Department of Chemistry
- Iowa State University
- Ames
- USA
- Ames Laboratory-US DOE
| | | | - Gargey B. Yagnik
- Department of Chemistry
- Iowa State University
- Ames
- USA
- Ames Laboratory-US DOE
| | - Young Jin Lee
- Department of Chemistry
- Iowa State University
- Ames
- USA
- Ames Laboratory-US DOE
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OuYang C, Chen B, Li L. High Throughput In Situ DDA Analysis of Neuropeptides by Coupling Novel Multiplex Mass Spectrometric Imaging (MSI) with Gas-Phase Fractionation. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2015; 26:1992-2001. [PMID: 26438126 PMCID: PMC4837696 DOI: 10.1007/s13361-015-1265-0] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2015] [Revised: 08/22/2015] [Accepted: 08/24/2015] [Indexed: 05/05/2023]
Abstract
Matrix-assisted laser desorption/ionization (MALDI) mass spectrometric imaging (MSI) is a powerful tool to map the spatial distribution of biomolecules on tissue sections. Recent developments of hybrid MS instruments allow combination of different types of data acquisition by various mass analyzers into a single MSI analysis, which reduces experimental time and sample consumptions. Here, using the well-characterized crustacean nervous system as a test-bed, we explore the utility of high resolution and accurate mass (HRAM) MALDI Orbitrap platform for enhanced in situ characterization of the neuropeptidome with improved chemical information. Specifically, we report on a multiplex-MSI method, which combines HRAM MSI with data dependent acquisition (DDA) tandem MS analysis in a single experiment. This method enables simultaneous mapping of neuropeptide distribution, sequence validation, and novel neuropeptide discovery in crustacean neuronal tissues. To enhance the dynamic range and efficiency of in situ DDA, we introduced a novel approach of fractionating full m/z range into several sub-mass ranges and embedding the setup using the multiplex-DDA-MSI scan events to generate pseudo fractionation before MS/MS scans. The division of entire m/z into multiple segments of m/z sub-ranges for MS interrogation greatly decreased the complexity of molecular species from tissue samples and the heterogeneity of the distribution and variation of intensities of m/z peaks. By carefully optimizing the experimental conditions such as the dynamic exclusion, the multiplex-DDA-MSI approach demonstrates better performance with broader precursor coverage, less biased MS/MS scans towards high abundance molecules, and improved quality of tandem mass spectra for low intensity molecular species. Graphical Abstract ᅟ.
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Affiliation(s)
- Chuanzi OuYang
- Department of Chemistry, University of Wisconsin-Madison, 1101 University Ave., Madison, WI, 53706, USA
| | - Bingming Chen
- School of Pharmacy, University of Wisconsin-Madison, 777 Highland Ave., Madison, WI, 53705, USA
| | - Lingjun Li
- Department of Chemistry, University of Wisconsin-Madison, 1101 University Ave., Madison, WI, 53706, USA.
- School of Pharmacy, University of Wisconsin-Madison, 777 Highland Ave., Madison, WI, 53705, USA.
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35
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Chubatyi ND, McEwen CN. Improving the Sensitivity of Matrix-Assisted Ionization (MAI) Mass Spectrometry Using Ammonium Salts. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2015; 26:1649-56. [PMID: 26122522 DOI: 10.1007/s13361-015-1205-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2015] [Revised: 05/17/2015] [Accepted: 05/21/2015] [Indexed: 05/03/2023]
Abstract
In matrix-assisted ionization (MAI), analyte incorporated in a small molecule matrix is introduced into an aperture linking atmospheric pressure with the vacuum of a mass spectrometer. Gas-phase analyte ions are spontaneously produced without use of a laser or high voltage. Here we investigate analyte and background ion abundances upon addition of ammonium salts to various MAI matrix/analyte solutions. Regardless of the ammonium salt or matrix used, chemical background ions are suppressed and/or analyte ion abundance improved for basic small molecules, peptides, and proteins. Background ion abundances increase with increasing inlet temperature, but are suppressed with addition of any of a variety of ammonium salts without much effect on the total ion abundances of the analyte ions. However, at lower inlet temperature using the matrices 2-bromo-2-nitropropane-1,3-diol, 1,2-dicyanobenzene, and 3-nitrobenzonitrile (3-NBN), analyte ion abundance increases and any chemical background decreases upon addition of ammonium salt. The improvement in sensitivity using 3-NBN with ammonium salt allows full acquisition mass spectra consuming as little as 1 fmol of ubiquitin. More complete peptide coverage for 100 fmol of a BSA tryptic digest, and increased sensitivity of drugs spiked in urine and saliva were observed after ammonium salt addition to the 3-NBN matrix.
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37
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Buchberger A, Yu Q, Li L. Advances in Mass Spectrometric Tools for Probing Neuropeptides. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2015; 8:485-509. [PMID: 26070718 PMCID: PMC6314846 DOI: 10.1146/annurev-anchem-071114-040210] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Neuropeptides are important mediators in the functionality of the brain and other neurological organs. Because neuropeptides exist in a wide range of concentrations, appropriate characterization methods are needed to provide dynamic, chemical, and spatial information. Mass spectrometry and compatible tools have been a popular choice in analyzing neuropeptides. There have been several advances and challenges, both of which are the focus of this review. Discussions range from sample collection to bioinformatic tools, although avenues such as quantitation and imaging are included. Further development of the presented methods for neuropeptidomic mass spectrometric analysis is inevitable, which will lead to a further understanding of the complex interplay of neuropeptides and other signaling molecules in the nervous system.
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Affiliation(s)
- Amanda Buchberger
- Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706-1322;
| | - Qing Yu
- School of Pharmacy, University of Wisconsin-Madison, Madison, Wisconsin 53705-2222;
| | - Lingjun Li
- Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706-1322;
- School of Pharmacy, University of Wisconsin-Madison, Madison, Wisconsin 53705-2222;
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38
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Spraggins JM, Rizzo DG, Moore JL, Rose KL, Hammer ND, Skaar EP, Caprioli RM. MALDI FTICR IMS of Intact Proteins: Using Mass Accuracy to Link Protein Images with Proteomics Data. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2015; 26:974-85. [PMID: 25904064 PMCID: PMC4442642 DOI: 10.1007/s13361-015-1147-5] [Citation(s) in RCA: 81] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2015] [Revised: 03/20/2015] [Accepted: 03/20/2015] [Indexed: 05/11/2023]
Abstract
MALDI imaging mass spectrometry is a highly sensitive and selective tool used to visualize biomolecules in tissue. However, identification of detected proteins remains a difficult task. Indirect identification strategies have been limited by insufficient mass accuracy to confidently link ion images to proteomics data. Here, we demonstrate the capabilities of MALDI FTICR MS for imaging intact proteins. MALDI FTICR IMS provides an unprecedented combination of mass resolving power (~75,000 at m/z 5000) and accuracy (<5ppm) for proteins up to ~12kDa, enabling identification based on correlation with LC-MS/MS proteomics data. Analysis of rat brain tissue was performed as a proof-of-concept highlighting the capabilities of this approach by imaging and identifying a number of proteins including N-terminally acetylated thymosin β(4) (m/z 4,963.502, 0.6ppm) and ATP synthase subunit ε (m/z 5,636.074, -2.3ppm). MALDI FTICR IMS was also used to differentiate a series of oxidation products of S100A8 (m/z 10,164.03, -2.1ppm), a subunit of the heterodimer calprotectin, in kidney tissue from mice infected with Staphylococcus aureus. S100A8 - M37O/C42O(3) (m/z 10228.00, -2.6ppm) was found to co-localize with bacterial microcolonies at the center of infectious foci. The ability of MALDI FTICR IMS to distinguish S100A8 modifications is critical to understanding calprotectin's roll in nutritional immunity.
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Affiliation(s)
- Jeffrey M Spraggins
- Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN, 37205, USA,
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39
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Woodall DW, Wang B, Inutan ED, Narayan SB, Trimpin S. High-Throughput Characterization of Small and Large Molecules Using Only a Matrix and the Vacuum of a Mass Spectrometer. Anal Chem 2015; 87:4667-74. [DOI: 10.1021/ac504475x] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Daniel W. Woodall
- Department
of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, Michigan 48202, United States
| | - Beixi Wang
- Department
of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, Michigan 48202, United States
| | - Ellen D. Inutan
- Department
of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, Michigan 48202, United States
| | - Srinivas B. Narayan
- Detroit Medical Center: Detroit Hospital (DMC), Detroit, Michigan 48201, United States
| | - Sarah Trimpin
- Department
of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, Michigan 48202, United States
- Cardiovascular
Research Institute, Wayne State University School of Medicine, Detroit, Michigan 48202, United States
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40
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Chen B, Lietz CB, Li L. In Situ characterization of proteins using laserspray ionization on a high-performance MALDI-LTQ-Orbitrap mass spectrometer. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2014; 25:2177-80. [PMID: 25273590 PMCID: PMC4224596 DOI: 10.1007/s13361-014-0986-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2014] [Revised: 08/10/2014] [Accepted: 08/18/2014] [Indexed: 05/09/2023]
Abstract
The MALDI-LTQ-Orbitrap XL mass spectrometer is a high performance instrument capable of high resolution and accurate mass (HRAM) measurements. The maximum m/z of 4000 precludes the MALDI analysis of proteins without generating multiply charged ions. Herein, we present the study of HRAM laserspray ionization mass spectrometry (MS) with MS/MS and MS imaging capabilities using 2-nitrophloroglucinol (2-NPG) as matrix on a MALDI-LTQ-Orbitrap XL mass spectrometer. The optimized conditions for multiply charged ion production have been determined and applied to tissue profiling and imaging. Biomolecules as large as 15 kDa have been detected with up to five positive charges at 100 K mass resolution (at m/z 400). More importantly, MS/MS and protein identification on multiply charged precursor ions from both standards and tissue samples have been achieved for the first time with an intermediate-pressure source. The initial results reported in this study highlight potential utilities of laserspray ionization MS analysis for simultaneous in situ protein identification, visualization, and characterization from complex tissue samples on a commercially available HRAM MALDI MS system.
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Affiliation(s)
- Bingming Chen
- School of Pharmacy, University of Wisconsin-Madison, 777 Highland Avenue, Madison, Wisconsin, 53705, United States
| | - Christopher B. Lietz
- Department of Chemistry, University of Wisconsin-Madison, 777 Highland Avenue, Madison, Wisconsin, 53705, United States
| | - Lingjun Li
- School of Pharmacy, University of Wisconsin-Madison, 777 Highland Avenue, Madison, Wisconsin, 53705, United States
- Department of Chemistry, University of Wisconsin-Madison, 777 Highland Avenue, Madison, Wisconsin, 53705, United States
- Address reprint requests to: Dr. Lingjun Li, School of Pharmacy, University of Wisconsin-Madison, 777 Highland Avenue, Madison, Wisconsin 53705-2222 USA; Phone: +1-608-265-8491; Fax: +1-608-262-5345;
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41
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Trimpin S, Wang B. Inlet and Vacuum Ionization from Ambient Conditions. AMBIENT IONIZATION MASS SPECTROMETRY 2014. [DOI: 10.1039/9781782628026-00423] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The discovery that laser ablation of a common MALDI matrix at atmospheric pressure without use of a voltage produced ions with nearly identical charge states to ESI led to a series of new ionization methods that we have given the general term inlet and vacuum ionization. The initial thought that the laser was necessary for matrix-assisted ionization gave way to ionization requiring a heated inlet with a pressure-drop region and then to a matrix that could be a solvent or no matrix. This in turn led to laser ablation in vacuum producing multiply charged ions without an inlet, and finally to the present where we have found matrices that lift molecules into the gas phase as ions without any external energy source. Our mechanistic view of this new ionization process developed into ionization methods for use in mass spectrometry will be discussed. These methods are simple to use, safe, robust, and sensitive. Several approaches for high-throughput analyses of compounds irrespective of their molecular weight will be presented using low- and high-performance mass spectrometers.
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Affiliation(s)
- Sarah Trimpin
- Wayne State University, Department of Chemistry Detroit, MI USA
| | - Beixi Wang
- Wayne State University, Department of Chemistry Detroit, MI USA
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42
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Lutomski C, El-Baba TJ, Inutan ED, Manly CD, Wager-Miller J, Mackie K, Trimpin S. Transmission geometry laserspray ionization vacuum using an atmospheric pressure inlet. Anal Chem 2014; 86:6208-13. [PMID: 24896880 PMCID: PMC4082395 DOI: 10.1021/ac501788p] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2014] [Accepted: 06/04/2014] [Indexed: 12/11/2022]
Abstract
This represents the first report of laserspray ionization vacuum (LSIV) with operation directly from atmospheric pressure for use in mass spectrometry. Two different types of electrospray ionization source inlets were converted to LSIV sources by equipping the entrance of the atmospheric pressure inlet aperture with a customized cone that is sealed with a removable glass plate holding the matrix/analyte sample. A laser aligned in transmission geometry (at 180° relative to the inlet) ablates the matrix/analyte sample deposited on the vacuum side of the glass slide. Laser ablation from vacuum requires lower inlet temperature relative to laser ablation at atmospheric pressure. However, higher inlet temperature is required for high-mass analytes, for example, α-chymotrypsinogen (25.6 kDa). Labile compounds such as gangliosides and cardiolipins are detected in the negative ion mode directly from mouse brain tissue as intact doubly deprotonated ions. Multiple charging enhances the ion mobility spectrometry separation of ions derived from complex tissue samples.
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Affiliation(s)
- Corinne
A. Lutomski
- Department
of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | - Tarick J. El-Baba
- Department
of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | - Ellen D. Inutan
- Department
of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | - Cory D. Manly
- Department
of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | - James Wager-Miller
- Gill
Center for Biomolecular Science, Indiana
University, Bloomington, Indiana 47405, United
States
| | - Ken Mackie
- Gill
Center for Biomolecular Science, Indiana
University, Bloomington, Indiana 47405, United
States
| | - Sarah Trimpin
- Department
of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
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43
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Wang B, Tisdale E, Trimpin S, Wilkins CL. Matrix-Assisted Ionization Vacuum for High-Resolution Fourier Transform Ion Cyclotron Resonance Mass Spectrometers. Anal Chem 2014; 86:6792-6. [DOI: 10.1021/ac500511g] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Beixi Wang
- Department
of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | - Evgenia Tisdale
- Department
of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas 72701, United States
| | - Sarah Trimpin
- Department
of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | - Charles L. Wilkins
- Department
of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas 72701, United States
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44
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El-Baba TJ, Lutomski CA, Wang B, Trimpin S. Characterizing synthetic polymers and additives using new ionization methods for mass spectrometry. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2014; 28:1175-1184. [PMID: 24760557 DOI: 10.1002/rcm.6881] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2013] [Revised: 02/24/2014] [Accepted: 02/25/2014] [Indexed: 06/03/2023]
Abstract
RATIONALE New inlet and vacuum ionization methods provide advantages of specificity, simplicity and speed for the analysis of synthetic polymers and polymer additives directly from surfaces such as fibers using mass spectrometry (MS) on different commercial mass spectrometers (Waters SYNAPT G2, Thermo LTQ Velos). METHODS We compare inlet ionization methods with the recently discovered vacuum ionization method. This method, termed matrix assisted ionization vacuum (MAIV), utilizes the matrix 3-nitrobenzonitrile (3-NBN) for the analysis of synthetic polymers and additives without additional energy input by simply exposing the matrix:analyte:salt to the vacuum of the mass spectrometer. Matrix:analyte:salt samples can be introduced while dry (surfaces, e.g. glass slides, pipet tips) or slightly wet (e.g. filter paper, pipet tips). RESULTS Compounds ionized by these methods can be analyzed in both positive and negative detection modes through cationization or deprotonation, respectively. The dynamic range of the experiment can be enhanced, as well as structural analysis performed, by coupling the vacuum ionization method with ion mobility spectrometry mass spectrometry (IMS-MS) and tandem mass spectrometric (MS/MS) fragmentation. CONCLUSIONS The specificity of 3-NBN matrix to ionize small and large nonvolatile analyte molecules by MAIV makes this matrix a good choice for observing low-abundance additives in the presence of large amounts of synthetic polymer using MS.
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Affiliation(s)
- Tarick J El-Baba
- Department of Chemistry, Wayne State University, Detroit, MI, 48202, USA
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45
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Wong SY, Chen YC. Droplet-based electrospray ionization mass spectrometry for qualitative and quantitative analysis. JOURNAL OF MASS SPECTROMETRY : JMS 2014; 49:432-436. [PMID: 24809906 DOI: 10.1002/jms.3355] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2014] [Revised: 02/20/2014] [Accepted: 03/03/2014] [Indexed: 06/03/2023]
Affiliation(s)
- Song-Yi Wong
- Department of Applied Chemistry, National Chiao Tung University, Hsinchu, 300, Taiwan
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46
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El-Baba TJ, Lutomski CA, Wang B, Inutan ED, Trimpin S. Toward high spatial resolution sampling and characterization of biological tissue surfaces using mass spectrometry. Anal Bioanal Chem 2014; 406:4053-61. [DOI: 10.1007/s00216-014-7778-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2014] [Revised: 03/05/2014] [Accepted: 03/20/2014] [Indexed: 11/29/2022]
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47
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Recent methodological advances in MALDI mass spectrometry. Anal Bioanal Chem 2014; 406:2261-78. [PMID: 24652146 DOI: 10.1007/s00216-014-7646-6] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2013] [Revised: 01/17/2014] [Accepted: 01/21/2014] [Indexed: 10/25/2022]
Abstract
Matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) is widely used for characterization of large, thermally labile biomolecules. Advantages of this analytical technique are high sensitivity, robustness, high-throughput capacity, and applicability to a wide range of compound classes. For some years, MALDI-MS has also been increasingly used for mass spectrometric imaging as well as in other areas of clinical research. Recently, several new concepts have been presented that have the potential to further advance the performance characteristics of MALDI. Among these innovations are novel matrices with low proton affinities for particularly efficient protonation of analyte molecules, use of wavelength-tunable lasers to achieve optimum excitation conditions, and use of liquid matrices for improved quantification. Instrumental modifications have also made possible MALDI-MS imaging with cellular resolution as well as an efficient generation of multiply charged MALDI ions by use of heated vacuum interfaces. This article reviews these recent innovations and gives the author's personal outlook of possible future developments.
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48
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Kiss A, Smith DF, Reschke BR, Powell MJ, Heeren RMA. Top-down mass spectrometry imaging of intact proteins by laser ablation ESI FT-ICR MS. Proteomics 2014; 14:1283-9. [PMID: 24375984 DOI: 10.1002/pmic.201300306] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2013] [Accepted: 09/02/2013] [Indexed: 11/06/2022]
Abstract
Laser ablation ESI (LAESI) is a recent development in MS imaging. It has been shown that lipids and small metabolites can be imaged in various samples such as plant material, tissue sections or bacterial colonies without any sample pretreatment. Further, LAESI has been shown to produce multiply charged protein ions from liquids or solid surfaces. This presents a means to address one of the biggest challenges in MS imaging; the identification of proteins directly from biological tissue surfaces. Such identification is hindered by the lack of multiply charged proteins in common MALDI ion sources and the difficulty of performing tandem MS on such large, singly charged ions. We present here top-down identification of intact proteins from tissue with a LAESI ion source combined with a hybrid ion-trap FT-ICR mass spectrometer. The performance of the system was first tested with a standard protein with electron capture dissociation and infrared multiphoton dissociation fragmentation to prove the viability of LAESI FT-ICR for top-down proteomics. Finally, the imaging of a tissue section was performed, where a number of intact proteins were measured and the hemoglobin α chain was identified directly from tissue using CID and infrared multiphoton dissociation fragmentation.
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Affiliation(s)
- András Kiss
- FOM Institute AMOLF, Amsterdam, The Netherlands
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49
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Venter AR, Douglass KA, Shelley JT, Hasman G, Honarvar E. Mechanisms of real-time, proximal sample processing during ambient ionization mass spectrometry. Anal Chem 2014; 86:233-249. [PMID: 24308499 DOI: 10.1039/c7ay00948h] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
A review of ambient ionization mass spectrometry highlighting the central role of sample preparation immediate to and during sample analysis.
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Affiliation(s)
- Andre R Venter
- Department of Chemistry, Western Michigan University , Kalamazoo, Michigan 49008-5413, United States
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50
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Flanigan P, Levis R. Ambient femtosecond laser vaporization and nanosecond laser desorption electrospray ionization mass spectrometry. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2014; 7:229-256. [PMID: 25014343 DOI: 10.1146/annurev-anchem-071213-020343] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Recent investigations of ambient laser-based transfer of molecules into the gas phase for subsequent mass spectral analysis have undergone a renaissance resulting from the separation of vaporization and ionization events. Here, we seek to provide a snapshot of recent femtosecond (fs) duration laser vaporization and nanosecond (ns) duration laser desorption electrospray ionization mass spectrometry experiments. The former employs pulse durations of <100 fs to enable matrix-free laser vaporization with little or no fragmentation. When coupled to electrospray ionization, femtosecond laser vaporization provides a universal, rapid mass spectral analysis method requiring no sample workup. Remarkably, laser pulses with intensities exceeding 10(13) W cm(-2) desorb intact macromolecules, such as proteins, and even preserve the condensed phase of folded or unfolded protein structures according to the mass spectral charge state distribution, as demonstrated for cytochrome c and lysozyme. Because of the ability to vaporize and ionize multiple components from complex mixtures for subsequent analysis, near perfect classification of explosive formulations, plant tissue phenotypes, and even the identity of the manufacturer of smokeless powders can be determined by multivariate statistics. We also review the more mature field of nanosecond laser desorption for ambient mass spectrometry, covering the wide range of systems analyzed, the need for resonant absorption, and the spatial imaging of complex systems like tissue samples.
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Affiliation(s)
- Paul Flanigan
- Center for Advanced Photonics Research, Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122; ,
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