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Liu X, Gong Y, Jiang Z, Stevens T, Li W. Flexible high-density microelectrode arrays for closed-loop brain-machine interfaces: a review. Front Neurosci 2024; 18:1348434. [PMID: 38686330 PMCID: PMC11057246 DOI: 10.3389/fnins.2024.1348434] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2023] [Accepted: 01/12/2024] [Indexed: 05/02/2024] Open
Abstract
Flexible high-density microelectrode arrays (HDMEAs) are emerging as a key component in closed-loop brain-machine interfaces (BMIs), providing high-resolution functionality for recording, stimulation, or both. The flexibility of these arrays provides advantages over rigid ones, such as reduced mismatch between interface and tissue, resilience to micromotion, and sustained long-term performance. This review summarizes the recent developments and applications of flexible HDMEAs in closed-loop BMI systems. It delves into the various challenges encountered in the development of ideal flexible HDMEAs for closed-loop BMI systems and highlights the latest methodologies and breakthroughs to address these challenges. These insights could be instrumental in guiding the creation of future generations of flexible HDMEAs, specifically tailored for use in closed-loop BMIs. The review thoroughly explores both the current state and prospects of these advanced arrays, emphasizing their potential in enhancing BMI technology.
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Affiliation(s)
- Xiang Liu
- Neuroscience Program, Department of Physiology, Michigan State University, East Lansing, MI, United States
- Institute for Quantitative Health Science and Engineering (IQ), East Lansing, MI, United States
| | - Yan Gong
- Institute for Quantitative Health Science and Engineering (IQ), East Lansing, MI, United States
- Department of Electrical and Computer Engineering, Michigan State University, East Lansing, MI, United States
| | - Zebin Jiang
- Institute for Quantitative Health Science and Engineering (IQ), East Lansing, MI, United States
- Department of Electrical and Computer Engineering, Michigan State University, East Lansing, MI, United States
| | - Trevor Stevens
- Department of Electrical and Computer Engineering, Michigan State University, East Lansing, MI, United States
| | - Wen Li
- Neuroscience Program, Department of Physiology, Michigan State University, East Lansing, MI, United States
- Institute for Quantitative Health Science and Engineering (IQ), East Lansing, MI, United States
- Department of Electrical and Computer Engineering, Michigan State University, East Lansing, MI, United States
- Department of Biomedical Engineering, Michigan State University, East Lansing, MI, United States
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2
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Madden LR, Graham RD, Lempka SF, Bruns TM. Multiformity of extracellular microelectrode recordings from Aδ neurons in the dorsal root ganglia: a computational modeling study. J Neurophysiol 2024; 131:261-277. [PMID: 38169334 DOI: 10.1152/jn.00385.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Revised: 12/18/2023] [Accepted: 01/02/2024] [Indexed: 01/05/2024] Open
Abstract
Microelectrodes serve as a fundamental tool in electrophysiology research throughout the nervous system, providing a means of exploring neural function with a high resolution of neural firing information. We constructed a hybrid computational model using the finite element method and multicompartment cable models to explore factors that contribute to extracellular voltage waveforms that are produced by sensory pseudounipolar neurons, specifically smaller A-type neurons, and that are recorded by microelectrodes in dorsal root ganglia. The finite element method model included a dorsal root ganglion, surrounding tissues, and a planar microelectrode array. We built a multicompartment neuron model with multiple trajectories of the glomerular initial segment found in many A-type sensory neurons. Our model replicated both the somatic intracellular voltage profile of Aδ low-threshold mechanoreceptor neurons and the unique extracellular voltage waveform shapes that are observed in experimental settings. Results from this model indicated that tortuous glomerular initial segment geometries can introduce distinct multiphasic properties into a neuron's recorded waveform. Our model also demonstrated how recording location relative to specific microanatomical components of these neurons, and recording distance from these components, can contribute to additional changes in the multiphasic characteristics and peak-to-peak voltage amplitude of the waveform. This knowledge may provide context for research employing microelectrode recordings of pseudounipolar neurons in sensory ganglia, including functional mapping and closed-loop neuromodulation. Furthermore, our simulations gave insight into the neurophysiology of pseudounipolar neurons by demonstrating how the glomerular initial segment aids in increasing the resistance of the stem axon and mitigating rebounding somatic action potentials.NEW & NOTEWORTHY We built a computational model of sensory neurons in the dorsal root ganglia to investigate factors that influence the extracellular waveforms recorded by microelectrodes. Our model demonstrates how the unique structure of these neurons can lead to diverse and often multiphasic waveform profiles depending on the location of the recording contact relative to microanatomical neural components. Our model also provides insight into the neurophysiological function of axon glomeruli that are often present in these neurons.
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Affiliation(s)
- Lauren R Madden
- Department of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan, United States
- Biointerfaces Institute, University of Michigan, Ann Arbor, Michigan, United States
| | - Robert D Graham
- Department of Anesthesiology, Washington University, St. Louis, Missouri, United States
| | - Scott F Lempka
- Department of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan, United States
- Biointerfaces Institute, University of Michigan, Ann Arbor, Michigan, United States
- Department of Anesthesiology, University of Michigan, Ann Arbor, Michigan, United States
| | - Tim M Bruns
- Department of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan, United States
- Biointerfaces Institute, University of Michigan, Ann Arbor, Michigan, United States
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Payne SC, Osborne PB, Thompson A, Eiber CD, Keast JR, Fallon JB. Selective recording of physiologically evoked neural activity in a mixed autonomic nerve using a minimally invasive array. APL Bioeng 2023; 7:046110. [PMID: 37928642 PMCID: PMC10625482 DOI: 10.1063/5.0164951] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2023] [Accepted: 10/16/2023] [Indexed: 11/07/2023] Open
Abstract
Real-time closed-loop control of neuromodulation devices requires long-term monitoring of neural activity in the peripheral nervous system. Although many signal extraction methods exist, few are both clinically viable and designed for extracting small signals from fragile peripheral visceral nerves. Here, we report that our minimally invasive recording and analysis technology extracts low to negative signal to noise ratio (SNR) neural activity from a visceral nerve with a high degree of specificity for fiber type and class. Complex activity was recorded from the rat pelvic nerve that was physiologically evoked during controlled bladder filling and voiding, in an extensively characterized in vivo model that provided an excellent test bed to validate our technology. Urethane-anesthetized male rats (n = 12) were implanted with a four-electrode planar array and the bladder instrumented for continuous-flow cystometry, which measures urodynamic function by recording bladder pressure changes during constant infusion of saline. We demonstrated that differential bipolar recordings and cross-correlation analyses extracts afferent and efferent activity, and discriminated between subpopulations of fibers based on conduction velocity. Integrated Aδ afferent fiber activity correlated with bladder pressure during voiding (r2: 0.66 ± 0.06) and was not affected by activating nociceptive afferents with intravesical capsaicin (r2: 0.59 ± 0.14, P = 0.54, and n = 3). Collectively, these results demonstrate our minimally invasive recording and analysis technology is selective in extracting mixed neural activity with low/negative SNR. Furthermore, integrated afferent activity reliably correlates with bladder pressure and is a promising first step in developing closed-loop technology for bladder control.
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Affiliation(s)
| | - Peregrine B. Osborne
- Department of Anatomy and Physiology, University of Melbourne, Victoria 3010, Australia
| | | | - Calvin D. Eiber
- Department of Anatomy and Physiology, University of Melbourne, Victoria 3010, Australia
| | - Janet R. Keast
- Department of Anatomy and Physiology, University of Melbourne, Victoria 3010, Australia
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Fan J, Li X, Wang P, Yang F, Zhao B, Yang J, Zhao Z, Li X. A Hyperflexible Electrode Array for Long-Term Recording and Decoding of Intraspinal Neuronal Activity. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2023; 10:e2303377. [PMID: 37870208 PMCID: PMC10667843 DOI: 10.1002/advs.202303377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Revised: 09/23/2023] [Indexed: 10/24/2023]
Abstract
Neural interfaces for stable access to the spinal cord (SC) electrical activity can benefit patients with motor dysfunctions. Invasive high-density electrodes can directly extract signals from SC neuronal populations that can be used for the facilitation, adjustment, and reconstruction of motor actions. However, developing neural interfaces that can achieve high channel counts and long-term intraspinal recording remains technically challenging. Here, a biocompatible SC hyperflexible electrode array (SHEA) with an ultrathin structure that minimizes mechanical mismatch between the interface and SC tissue and enables stable single-unit recording for more than 2 months in mice is demonstrated. These results show that SHEA maintains stable impedance, signal-to-noise ratio, single-unit yield, and spike amplitude after implantation into mouse SC. Gait analysis and histology show that SHEA implantation induces negligible behavioral effects and Inflammation. Additionally, multi-unit signals recorded from the SC ventral horn can predict the mouse's movement trajectory with a high decoding coefficient of up to 0.95. Moreover, during step cycles, it is found that the neural trajectory of spikes and low-frequency local field potential (LFP) signal exhibits periodic geometry patterns. Thus, SHEA can offer an efficient and reliable SC neural interface for monitoring and potentially modulating SC neuronal activity associated with motor dysfunctions.
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Affiliation(s)
- Jie Fan
- Center for Excellence in Brain Science and Intelligence TechnologyInstitute of NeuroscienceChinese Academy of SciencesShanghai200031P. R. China
| | - Xiaocheng Li
- Center for Excellence in Brain Science and Intelligence TechnologyInstitute of NeuroscienceChinese Academy of SciencesShanghai200031P. R. China
| | - Peiyu Wang
- Center for Excellence in Brain Science and Intelligence TechnologyInstitute of NeuroscienceChinese Academy of SciencesShanghai200031P. R. China
| | - Fan Yang
- Center for Excellence in Brain Science and Intelligence TechnologyInstitute of NeuroscienceChinese Academy of SciencesShanghai200031P. R. China
| | - Bingzhen Zhao
- Center for Excellence in Brain Science and Intelligence TechnologyInstitute of NeuroscienceChinese Academy of SciencesShanghai200031P. R. China
| | - Jianing Yang
- Center for Excellence in Brain Science and Intelligence TechnologyInstitute of NeuroscienceChinese Academy of SciencesShanghai200031P. R. China
| | - Zhengtuo Zhao
- Center for Excellence in Brain Science and Intelligence TechnologyInstitute of NeuroscienceChinese Academy of SciencesShanghai200031P. R. China
| | - Xue Li
- Center for Excellence in Brain Science and Intelligence TechnologyInstitute of NeuroscienceChinese Academy of SciencesShanghai200031P. R. China
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Luan L, Yin R, Zhu H, Xie C. Emerging Penetrating Neural Electrodes: In Pursuit of Large Scale and Longevity. Annu Rev Biomed Eng 2023; 25:185-205. [PMID: 37289556 PMCID: PMC11078330 DOI: 10.1146/annurev-bioeng-090622-050507] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Penetrating neural electrodes provide a powerful approach to decipher brain circuitry by allowing for time-resolved electrical detections of individual action potentials. This unique capability has contributed tremendously to basic and translational neuroscience, enabling both fundamental understandings of brain functions and applications of human prosthetic devices that restore crucial sensations and movements. However, conventional approaches are limited by the scarce number of available sensing channels and compromised efficacy over long-term implantations. Recording longevity and scalability have become the most sought-after improvements in emerging technologies. In this review, we discuss the technological advances in the past 5-10 years that have enabled larger-scale, more detailed, and longer-lasting recordings of neural circuits at work than ever before. We present snapshots of the latest advances in penetration electrode technology, showcase their applications in animal models and humans, and outline the underlying design principles and considerations to fuel future technological development.
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Affiliation(s)
- Lan Luan
- Department of Electrical and Computer Engineering, Rice University, Houston, Texas, USA;
- Rice Neuroengineering Initiative, Rice University, Houston, Texas, USA
- Department of Bioengineering, Rice University, Houston, Texas, USA
| | - Rongkang Yin
- Department of Electrical and Computer Engineering, Rice University, Houston, Texas, USA;
- Rice Neuroengineering Initiative, Rice University, Houston, Texas, USA
| | - Hanlin Zhu
- Department of Electrical and Computer Engineering, Rice University, Houston, Texas, USA;
- Rice Neuroengineering Initiative, Rice University, Houston, Texas, USA
| | - Chong Xie
- Department of Electrical and Computer Engineering, Rice University, Houston, Texas, USA;
- Rice Neuroengineering Initiative, Rice University, Houston, Texas, USA
- Department of Bioengineering, Rice University, Houston, Texas, USA
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Böhler C, Vomero M, Soula M, Vöröslakos M, Porto Cruz M, Liljemalm R, Buzsaki G, Stieglitz T, Asplund M. Multilayer Arrays for Neurotechnology Applications (MANTA): Chronically Stable Thin-Film Intracortical Implants. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2023; 10:e2207576. [PMID: 36935361 DOI: 10.1002/advs.202207576] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Revised: 02/07/2023] [Indexed: 05/18/2023]
Abstract
Flexible implantable neurointerfaces show great promise in addressing one of the major challenges of implantable neurotechnology, namely the loss of signal connected to unfavorable probe tissue interaction. The authors here show how multilayer polyimide probes allow high-density intracortical recordings to be combined with a reliable long-term stable tissue interface, thereby progressing toward chronic stability of implantable neurotechnology. The probes could record 10-60 single units over 5 months with a consistent peak-to-peak voltage at dimensions that ensure robust handling and insulation longevity. Probes that remain in intimate contact with the signaling tissue over months to years are a game changer for neuroscience and, importantly, open up for broader clinical translation of systems relying on neurotechnology to interface the human brain.
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Affiliation(s)
- Christian Böhler
- Department of Microsystems Engineering (IMTEK), University of Freiburg, 79110, Freiburg, Germany
- BrainLinks-BrainTools Center, University of Freiburg, 79110, Freiburg, Germany
| | - Maria Vomero
- Department of Microsystems Engineering (IMTEK), University of Freiburg, 79110, Freiburg, Germany
- BrainLinks-BrainTools Center, University of Freiburg, 79110, Freiburg, Germany
| | - Marisol Soula
- Neuroscience Institute, Langone Medical Center, New York University, New York, 10016, USA
| | - Mihály Vöröslakos
- Neuroscience Institute, Langone Medical Center, New York University, New York, 10016, USA
| | - Maria Porto Cruz
- Department of Microsystems Engineering (IMTEK), University of Freiburg, 79110, Freiburg, Germany
- BrainLinks-BrainTools Center, University of Freiburg, 79110, Freiburg, Germany
| | - Rickard Liljemalm
- Department of Microsystems Engineering (IMTEK), University of Freiburg, 79110, Freiburg, Germany
| | - György Buzsaki
- Neuroscience Institute, Langone Medical Center, New York University, New York, 10016, USA
- Department of Physiology and Neuroscience, Langone Medical Center, New York University, New York, 10016, USA
- Department of Neurology, Langone Medical Center, New York University, New York, 10016, USA
| | - Thomas Stieglitz
- Department of Microsystems Engineering (IMTEK), University of Freiburg, 79110, Freiburg, Germany
- BrainLinks-BrainTools Center, University of Freiburg, 79110, Freiburg, Germany
- Bernstein Center Freiburg, University of Freiburg, 79110, Freiburg, Germany
| | - Maria Asplund
- Department of Microsystems Engineering (IMTEK), University of Freiburg, 79110, Freiburg, Germany
- BrainLinks-BrainTools Center, University of Freiburg, 79110, Freiburg, Germany
- Department of Microtechnology and Nanoscience, Chalmers University of Technology, Gothenburg, SE-41296, Sweden
- Division of Nursing and Medical Technology, Luleå University of Technology, Luleå, 97187, Sweden
- Freiburg Institute for Advanced Studies (FRIAS), University of Freiburg, 79110, Freiburg, Germany
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Glielmo A, Macocco I, Doimo D, Carli M, Zeni C, Wild R, d'Errico M, Rodriguez A, Laio A. DADApy: Distance-based analysis of data-manifolds in Python. PATTERNS (NEW YORK, N.Y.) 2022; 3:100589. [PMID: 36277821 PMCID: PMC9583186 DOI: 10.1016/j.patter.2022.100589] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Revised: 07/24/2022] [Accepted: 08/24/2022] [Indexed: 11/28/2022]
Abstract
DADApy is a Python software package for analyzing and characterizing high-dimensional data manifolds. It provides methods for estimating the intrinsic dimension and the probability density, for performing density-based clustering, and for comparing different distance metrics. We review the main functionalities of the package and exemplify its usage in a synthetic dataset and in a real-world application. DADApy is freely available under the open-source Apache 2.0 license.
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Affiliation(s)
- Aldo Glielmo
- International School for Advanced Studies (SISSA), Via Bonomea 265, Trieste, Italy
- Banca d'Italia, Italy
| | - Iuri Macocco
- International School for Advanced Studies (SISSA), Via Bonomea 265, Trieste, Italy
| | - Diego Doimo
- International School for Advanced Studies (SISSA), Via Bonomea 265, Trieste, Italy
| | - Matteo Carli
- International School for Advanced Studies (SISSA), Via Bonomea 265, Trieste, Italy
| | - Claudio Zeni
- International School for Advanced Studies (SISSA), Via Bonomea 265, Trieste, Italy
| | - Romina Wild
- International School for Advanced Studies (SISSA), Via Bonomea 265, Trieste, Italy
| | - Maria d'Errico
- Functional Genomics Center, ETH Zurich/UZH, Winterthurerstrasse 190, Zurich, Switzerland
- Swiss Institute of Bioinformatics, Quartier Sorge - Batiment, Amphipole 1015, Lausanne, Switzerland
| | - Alex Rodriguez
- The Abdus Salam International Centre for Theoretical Physics (ICTP), Strada Costiera 11, Trieste, Italy
| | - Alessandro Laio
- International School for Advanced Studies (SISSA), Via Bonomea 265, Trieste, Italy
- The Abdus Salam International Centre for Theoretical Physics (ICTP), Strada Costiera 11, Trieste, Italy
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