Raman spectroscopic analysis of a desert cyanobacterium Nostoc sp. in response to UVB radiation

Biochemical and proteomic response of the freshwater green alga Pseudochlorella pringsheimii to iron and salinity stressors

BACKGROUND

Pseudochlorella pringsheimii (Ppr) is a green unicellular alga rich with chlorophyll, carotenoids, and antioxidants. As a widespread organism, Ppr must face, and adapt to, many environmental stresses and these are becoming more frequent and more extreme under the conditions of climate change. We therefore focused on salinity induced by NaCl and iron (Fe) variation stresses, which are commonly encountered by algae in their natural environment.

RESULTS

The relatively low stress levels improved the biomass, growth rate, and biochemical components of Ppr. In addition, the radical-scavenging activity, reducing power, and chelating activity were stimulated by lower iron concentrations and all NaCl concentrations. We believe that the alga has adapted to the stressors by increasing certain biomolecules such as carotenoids, phenolics, proteins, and carbohydrates. These act as antioxidants and osmoregulators to protect cell membranes and other cellular components from the harmful effects of ions. We have used SDS-PAGE and 2D-PAGE in combination with tandem mass spectrometry to identify responsive proteins in the proteomes of stressed vs. non-stressed Ppr. The results of 2D-PAGE analysis showed a total of 67 differentially expressed proteins, and SDS-PAGE identified 559 peptides corresponding to 77 proteins. Of these, 15, 8, and 17 peptides were uniquely identified only under the control, iron, and salinity treatments, respectively. The peptides were classified into 12 functional categories: energy metabolism (the most notable proteins), carbohydrate metabolism, regulation, photosynthesis, protein synthesis, stress proteins, oxido-reductase proteins, transfer proteins, ribonucleic-associated proteins, hypothetical proteins, and unknown proteins. The number of identified peptides was higher under salinity stress compared to iron stress.

CONCLUSIONS

A proposed mechanism for the adaptation of Ppr to stress is discussed based on the collected data. This data could serve as reference material for algal proteomics and the mechanisms involved in mediating stress tolerance.

Whole genome sequencing of cyanobacterium Nostoc sp. CCCryo 231-06 using microfluidic single cell technology

The Nostoc sp. strain CCCryo 231-06 is a cyanobacterial strain capable of surviving under extreme conditions and thus is of great interest for the astrobiology community. The knowledge of its complete genome sequence would serve as a guide for further studies. However, a major concern has been placed on the effects of contamination on the quality of sequencing data without a reference genome. Here, we report the use of microfluidic technology combined with single cell sequencing and de novo assembly to minimize the contamination and recover the complete genome of the Nostoc strain CCCryo 231-06 with high quality. 100% of the whole genome was recovered with all contaminants removed and a strongly supported phylogenetic tree. The data reported can be useful for comparative genomics for phylogenetic and taxonomic studies. The method used in this work can be applied to studies that require high-quality assemblies of genomes of unknown microorganisms.

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This work uses a microfluidic platform for Nostoc single cell sequencing

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This technology provides minimal contamination in single cell sequencing

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Complete genome of the Nostoc strain CCCryo 231-06 was recovered with high quality

Toxicities of three metal oxide nanoparticles to a marine microalga: Impacts on the motility and potential affecting mechanisms

With the fast growth of the production and application of engineered nanomaterials (ENMs), nanoparticles (NPs) that escape into the environment have drawn increasing attention due to their ecotoxicological impacts. Motile microalgae are a type of primary producer in most ecosystems; however, the impacts of NPs on the motility of microalgae have not been studied yet. So the toxic impacts of three common metal oxide NPs (nTiO₂, nZnO, and nFe₂O₃) on swimming speed and locomotion mode of a marine microalgae, Platymonas subcordiformis, were investigated in this study. Our results demonstrated that both the velocity and linearity (LIN) of swimming were significantly decreased after the exposure of P. subcordiformis to the tested NPs. In addition, the obtained data indicate that NPs may suppress the motility of P. subcordiformis by constraining the energy available for swimming, as indicated by the significantly lower amounts of intracellular ATP and photosynthetic pigments and the lower activities of enzymes catalyzing glycolysis. Incubation of P. subcordiformis with the tested NPs generally resulted in the overproduction of reactive oxygen species (ROS), aggravation of lipid peroxidation, and induction of antioxidant enzyme activities, suggesting that imposing oxidative stress, which may impair the structural basis for swimming (i.e. the membrane of flagella), could be another reason for the observed motility suppression. Moreover, NP exposure led to significant reductions in the cell viability of P. subcordiformis, which may be due to the disruption of the energy supply (i.e., photosynthesis) and ROS-induced cellular damage. Our results indicate that waterborne NPs may pose a great threat to motile microalgae and subsequently to the health and stability of the marine ecosystem.

Biocrust Research in China: Recent Progress and Application in Land Degradation Control

Desert ecosystems are generally considered lifeless habitats characterised by extreme environmental conditions, yet they are successfully colonised by various biocrust nonvascular communities. A biocrust is not only an important ecosystem engineer and a bioindicator of desert ecological restoration but also plays a vital role in linking surficial abiotic and biotic factors. Thus, extensive research has been conducted on biocrusts in critical dryland zones. However, few studies have been conducted in the vast temperate deserts of China prior to the beginning of this century. We reviewed the research on biocrusts conducted in China since 2000, which firstly focused on the eco-physiological responses of biocrusts to species composition, abiotic stresses, and anthropological disturbances. Further, research on the spatial distributions of biocrusts as well as their succession at different spatial scales, and relationships with vascular plants and soil biomes (especially underlying mechanisms of seed retention, germination, establishment and survival of vascular plants during biocrust succession, and creation of suitable niches and food webs for soil animals and microorganisms) was analysed. Additionally, studies emphasising on the contribution of biocrusts to ecological and hydrological processes in deserts as well as their applications in the cultivation and inoculation of nonvascular plants for land degradation control and ecological restoration were assessed. Finally, recent research on biocrusts was evaluated to propose future emerging research themes and new frontiers.

Exposure of cyanobacterium Nostoc sp. to the Mars-like stratosphere environment

During the HH-19-2 flight mission of the Chinese Scientific Experimental System, dried Nostoc sp. cells were exposed to the stratosphere environment (32,508 m altitude) for 3 h and 22 min. The atmospheric pressure, temperature, relative humidity, and ionizing and non-ionizing radiation levels at that altitude are similar to those on the surface of Mars. Although analyses revealed decreased photosynthetic activity, a decline in autofluorescence, and damage to the cellular morphology in the flight-exposed sample, the death rate was low (28%). Physiological changes were not obvious after the exposure to the Mars-like vacuum conditions. The ground-exposed samples showed a similar trend to the flight-exposed samples, but the damage was relatively slight. RNA-sequencing data revealed a number of affected metabolic pathways: photosynthetic system and CO₂ fixation function, activation of antioxidant systems, heat shock protein, DNA repair, and protein synthesis. Results suggest that Nostoc sp. has the potential to survive in a Mars-like environment and that it may be a suitable pioneer species to colonize Mars in the future in closed life-support systems (base) or in localities with relatively suitable conditions for life, such as localities with water available.

Are biosynthesized nanomaterials toxic for the environment? Effects of perlite and CuO/perlite nanoparticles on unicellular algae Haematococcus pluvialis

The properties of nanomaterials such as perlite nanoparticles and their increased application have raised concerns about their probable toxic impacts on the aquatic ecosystems and algae. Here, a novel biochemical synthesis and immobilization of CuO is reported on perlite nanoparticles (CuO/Per-NPs) and its toxic effect on alga has been compared with nanoperlites. This biosynthesis of CuO/Per-NPs performed using phytochemicals of Haematococcus pluvialis, Sargassum angustifolium, and walnut leaves in the aqueous extract. The structural, morphological, and colloidal properties of the as-synthesized nanoparticles have been confirmed by various methods. According to the obtained results, the morphology of the synthesized CuO/Per-NPs was spherical with sizes ranging from about 13 to 24 nm. Besides, the effects of Per-NPs and CuO/Per-NPs on unicellular algae H. pluvialis were studied. The changes in the amount of chlorophyll a, chlorophyll b, and Carotenoids in the presence of different concentrations of Per-NPs (25, 50, 100 mg/L) were more than CuO/Per-NPs. Also, decreased growth rate and efficiency of photosystem II confirmed the toxic effects of Per-NPs. However, the toxicity of CuO/Per-NPs appears to be lower than that of Per-NPs, which can be due to the changes in the surface and cationic charge of modified nanoperlit. These changes lead to a decrease in the interaction of nanoparticles with H. pluvilalis and a reduction in ROS production. Finally, the results of GC-MS used to evaluate volatile compounds, indicated an increase in the number of phenolic compounds in comparison to the control samples in 25, 50, and 100 mg/L treatments of nano-perlite.

Robust natural ultraviolet filters from marine ecosystems for the formulation of environmental friendlier bio-sunscreens

Ultraviolet radiation (UVR) has detrimental effects on human health. It induces oxidative stress, deregulates signaling mechanisms, and produces DNA mutations, factors that ultimately can lead to the development of skin cancer. Therefore, reducing exposure to UVR is of major importance. Among available measures to diminish exposure is the use of sunscreens. However, recent studies indicate that several of the currently used filters have adverse effects on marine ecosystems and human health. This situation leads to the search for new photoprotective compounds that, apart from offering protection, are environmentally friendly. The answer may lie in the same marine ecosystems since molecules such as mycosporine-like amino acids (MAAs) and scytonemin can serve as the defense system of some marine organisms against UVR. This review will discuss the harmful effects of UVR and the mechanisms that microalgae have developed to cope with it. Then it will focus on the biological distribution, characteristics, extraction, and purification methods of MAAs and scytonemin molecules to finally assess its potential as new filters for sunscreen formulation.

Toxicity evaluation of iron oxide nanoparticles and accumulation by microalgae Coelastrella terrestris

Uses of iron oxide nanoparticles have increased in the last decade. The increased application marked a concern regarding their fate and behavior in the environment. Especially towards the aquatic ecosystems, as the ultimate descend of these iron oxide nanoparticles are aquatic bodies. The greater surface area per mass compared with larger-sized materials of the same chemistry renders these nanoparticles biologically more active. Therefore, it is imperative to assess their eco-toxicogical impact on aquatic eco-systems. In the present study, comparative assessment of iron oxide nanoparticles and their bulk counterpart have been monitored using Coelastrella terrestris up to 40 days. Interestingly, study reveals the potential of Coelastrella terrestris as tool for the bioremediation of iron nanoparticles to combat nano-pollution. Adsorption/absorption kinetics measured after 25 days of treatments with iron oxide nanoparticle and its bulk counterpart revealed higher absorption levels in comparison to the adsorption with maximum accumulation factor (AF) of 2.984 at 50 mg L^-1 in nano-form. Iron oxide absorption was found linearly related with concentration in both cases (y = 11.313x-12.165, R² = 0.8691 in nano; y = 6.35x-5.74, R² = 0.8128 in bulk). However, 50-mg L^-1 nanoparticle concentration was perceived sub-lethal for the algae with 33.33% algal growth reduction under nano and 27.77% under bulk counterpart. Other biochemical parameters, i.e., SOD, CAT, MDA, and lipid quantification, were also quantified to correlate the state of metabolism of treated algal cells in comparison to the control and these exhibited reduction in algal growth due to oxidative stress. Morphological changes were monitored through SEM and TEM.

Toxicity assessment of ZnO nanoparticles to freshwater microalgae Coelastrella terrestris

Commercial usage of ZnO nanoparticles has increased recently due to its versatile applications, raising serious environmental concern because of its ultimate release of nanoparticles in aquatic ecosystem. Therefore, it is important to understand the impact of ZnO nanoparticle toxicity especially on algal flora, which is the primary producer in the aquatic food chain. In the current study, algal growth kinetics was assessed after the exposure of zinc oxide nanoparticles and its bulk counterpart to Coelastrella terrestris (Chlorophyceae). Zinc oxide nanoparticles were found to be more toxic (y = 34.673x, R² = - 0.101, 1 mg L^-1 nanoparticle (NP)) than bulk (y = 50.635x, R² = 0.173, 1 mg L^-1 bulk) by entrapping the algal cell surface. Higher toxicity may be due to oxidative stress within the algal cell as confirmed through biochemical analysis. Biochemical parameters revealed stressful physiological condition in the alga under nanoparticle exposure, as lactate dehydrogenase release (18.89 ± 0.2 NP; 13.67 ± 0.2 bulk), lipid peroxidation (0.9147 ± 1.2 NP; 0.7480 ± 0.8 bulk), and catalase activity (4.77 ± 0.1 NP; 3.32 ± 0.1 bulk) were found higher at 1 mg L^-1 in the case of nano-form. Surface adsorptions of nanoparticles were observed by SEM. Cell organelle damage, cell wall breakage, and cytoplasm shrinkage were found as responses under toxic condition through SEM and TEM. Toxicity was found to be influenced by dose concentration and exposure period. This study indicates that nano-form of ZnO is found to be more toxic than bulk form to freshwater alga.

Cre-miR914-regulated RPL18 is involved with UV-B adaptation in Chlamydomonas reinhardtii

UV radiation is a serious threat to life, and algae have developed highly efficient adaptations to UV radiation through the course of evolution. To date, studies investigating the mechanisms of UV adaptation in algae have focused on physiological regulation and associated protein coding genes, with only a few reports on associated protein non-coding genes. In a previous study, we found that Cre-miR914 was significantly down-regulated in Chlamydomonas reinhardtii in response to heat shock. In the present study, we aimed to determine whether Cre-miR914 plays a role in response to UV-B radiation. Our bioinformatics analysis indicated that the potential target gene of Cre-miR914 is ribosomal protein L18 (RPL18). We also measured the expression of Cre-miR914 and RPL18 in response to UV-B radiation through qPCR analysis. Then, we constructed cell lines overexpressing Cre-miR914 or RPL18, and performed survival experiments under UV-B stress. The results showed that Cre-miR914 overexpression decreased resistance while RPL18 overexpression enhanced tolerance to UV-B radiation. These results indicate that Cre-miR914 and its potential target gene RPL18 are involved in the adaptation to UV-B in C. reinhardtii.

Dalangtan Saline Playa in a Hyperarid Region of Tibet Plateau: III. Correlated Multiscale Surface Mineralogy and Geochemistry Survey

We report the first multiscale, systematic field-based testing of correlations between orbital scale advanced spaceborne thermal emission and reflection radiometer visible near-infrared (VNIR)/shortwave infrared (SWIR) reflectance and thermal infrared relative emissivity and outcrop scale Raman spectroscopy, VNIR reflectance, X-ray diffraction (XRD), and laser-induced breakdown spectroscopy (LIBS) mineralogy and chemistry in a saline dry lakebed. This article is one of three reports describing the evolution of salt deposits, meteorological record, and surface and subsurface salt mineralogy in Dalangtan, Qaidam Basin, a hyperarid region of the Tibet Plateau, China, as potential environmental, mineralogical, and biogeochemical analogs to Mars. We have successfully bridged remote sensing data to fine scale mineralogy and chemistry data. We have defined spectral end-members in the northwestern Qaidam Basin and classified areas within the study area on the basis of their spectral similarity to the spectral end-members. Results of VNIR/SWIR classification reveal zonation of spectral units within three large anticlinal domes in the study area that can be correlated between the three structures. Laboratory Raman, VNIR reflectance, XRD, and LIBS data of surface mineral samples collected along a traverse over Xiaoliangshan (XLS) indicate that the surface is dominated by gypsum, Mg sulfates, Na sulfates, halite, and carbonates, with minor concentrations of illite present in most samples as well. Our results can be used as a first step toward better characterizing the potential of orbital reflectance spectroscopy as a method for mineral detection and quantification in salt-rich planetary environments, with the benefit that this technique can be validated on the ground using instruments onboard rovers.

Raman spectroscopy of microbial pigments

Raman spectroscopy is a rapid nondestructive technique providing spectroscopic and structural information on both organic and inorganic molecular compounds. Extensive applications for the method in the characterization of pigments have been found. Due to the high sensitivity of Raman spectroscopy for the detection of chlorophylls, carotenoids, scytonemin, and a range of other pigments found in the microbial world, it is an excellent technique to monitor the presence of such pigments, both in pure cultures and in environmental samples. Miniaturized portable handheld instruments are available; these instruments can be used to detect pigments in microbiological samples of different types and origins under field conditions.

Reproductive and locomotory capacities of Caenorhabditis elegans were not affected by simulated variable gravities and spaceflight during the Shenzhou-8 mission

Reproduction and locomotion are essential features of animals that help to facilitate their interaction with the surrounding environment. Previous studies have produced inconsistent results on behavioral response to spaceflight by the model animal Caenorhabditis elegans (C. elegans) in liquid culture. Using standard agar-based nematode growth medium (NGM), we show here that both reproductive and locomotory capacities of C. elegans were not significantly changed by centrifuge-produced hypergravity or clinostat-simulated microgravity. To investigate the effect of actual spaceflight on C. elegans, a nematode test unit was specifically designed to maintain its normal growth on solid NGM slides and to allow automatic RNA fixation on board the Shenzhou-8 spaceflight. We did not detect alteration in either brood size of immediate progenies from postflight nematodes or locomotory behavior, including speed of locomotion, frequency of reversals, and rate of body bends of space-flown nematodes collected directly from nematode test units. Our results provide clear evidence that the nematode test unit is an appropriate apparatus for nematode growth on standard NGM and can be used for on-orbit analysis of C. elegans, including onboard RNA fixation for molecular analysis and real-time video acquisition for behavioral analysis, which are critical for further studies in unmanned spaceflight and outer space exploration.

The earliest records of internally stratified cyanobacterial and algal lichens from the Lower Devonian of the Welsh Borderland

Lichenization is assumed to be a very ancient mode of fungal nutrition, but fossil records are rare. Here we describe two fragments of exceptionally preserved, probably charred, lichen thalli with internal stratification. Cyanolichenomycites devonicus has a cyanobacterial and Chlorolichenomycites salopensis a unicellular, presumably green algal photobiont. Fruiting bodies are missing. Cyanolichenomycites devonicus forms asexual spores in a pycnidium. All specimens were examined with scanning electron microscopy techniques. The fossils were extracted by maceration. Extant lichens and free-living cyanobacteria were either experimentally charcoalified for comparison or conventionally prepared. Based on their septate hyphal structure, both specimens are tentatively interpreted as representatives of the Pezizomycotina (Ascomycota). Their presence in 415 million yr (Myr) old rocks from the Welsh Borderland predates existing Late Cretaceous records of pycnidial conidiomata by some 325 Myr and Triassic records of lichens with broadly similar organization by some 195 Myr. These fossils represent the oldest known record of lichens with symbionts and anatomy as typically found in morphologically advanced taxa today. The latter does not apply to Winfrenatia reticulata, the enigmatic crustose lichen fossil from the Lower Devonian, nor to presumed lichen-like organisms such as the Cambrian Farghera robusta or to the Lower Devonian Spongiophyton minutissimum.

Toxicological effects of nanometer titanium dioxide (nano-TiO2) on Chlamydomonas reinhardtii

The toxicological effects of nanometer titanium dioxide (nano-TiO2) on a unicellular green alga Chlamydomonas reinhardtii were assessed by investigating the changes of the physiology and cyto-ultrastructure of this species under treatment. We found that nano-TiO2 inhibited photosynthetic efficiency and cell growth, but the content of chlorophyll a content in algae did not change, while carotenoid and chlorophyll b contents increased. Malondialdehyde (MDA) content reached maximum values after 8h exposure and then decreased to a moderately low level at 72 h. Electron microscopy images indicated that as concentrations of nano-TiO2 increased, a large number of C. reinhardtii cells were noted to be damaged: the number of chloroplasts declined, various other organelles were degraded, plasmolysis occurred, and TiO2 nanoparticles were found to be located inside cell wall and membrane. It was also noted that cell surface was surrounded by TiO2 particles, which could present an obstacle to the exchange of substances between the cell and its surrounding environment. To sum up, the effect of nano-TiO2 on C. reinhardtii included cell surface aggregation, photosynthesis inhibition, lipid peroxidation and new protein synthesis, while the response of C. reinhardtii to nano-TiO2 was a rapid process which occurs during 24 h after exposing and may relate to physiological stress system to mitigate damage.

Damage to DNA caused by UV-B radiation in the desert cyanobacterium Scytonema javanicum and the effects of exogenous chemicals on the process

Radiation with UV-B increased the damage to DNA in Scytonema javanicum, a desert-dwelling soil microorganism, and the level of damage varied with the intensity of UV-B radiation and duration of exposure. Production of reactive oxygen species (ROS) also increased because of the radiation. Different exogenous chemicals (ascorbate acid, ASC; N-acetylcysteine, NAC; glyphosate, GPS; and 2-methyl-4-chlorophenoxyacetic acid, MCPA-Na) differed in their effect on the extent of DNA damage and ROS production: whereas NAC and ASC protected the DNA from damage and resulted in reduced ROS production, the herbicides (GPS and MCPA-Na) increased the extent of damage, lowered the rate of photosynthesis, and differed in their effect on ROS production. The chemicals probably have different mechanisms to exercise their effects: NAC and ASC probably function as antioxidant agents or as precursors of other antioxidant molecules that protect the DNA and photosynthetic apparatus directly from the ROS produced as a result of UV-B radiation, and GPS and MCPA-Na probably disrupt the normal metabolism in S. javanicum to induce the leaking of ROS into the photosynthetic electron transfer pathway following UV-B radiation, and thereby damage the DNA. Such mechanisms have serious implications for the use of environment-friendly herbicides, which, because they can destroy DNA, may prove harmful to soil microorganisms.