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For: Lee JY, Kitaoka M. A beginner's guide to rigor and reproducibility in fluorescence imaging experiments. Mol Biol Cell 2018;29:1519-1525. [PMID: 29953344 PMCID: PMC6080651 DOI: 10.1091/mbc.e17-05-0276] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2017] [Revised: 04/25/2018] [Accepted: 04/27/2018] [Indexed: 02/01/2023]  Open
Number Cited by Other Article(s)
1
Elblová P, Lunova M, Henry SJ, Tu X, Calé A, Dejneka A, Havelková J, Petrenko Y, Jirsa M, Stephanopoulos N, Lunov O. Peptide-coated DNA nanostructures as a platform for control of lysosomal function in cells. CHEMICAL ENGINEERING JOURNAL (LAUSANNE, SWITZERLAND : 1996) 2024;498:155633. [PMID: 39372137 PMCID: PMC11448966 DOI: 10.1016/j.cej.2024.155633] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/08/2024]
2
Bruce G, Bagherpour S, Duch M, Plaza JA, Stolnik S, Pérez-García L. Exploring the influence of silicon oxide microchips shape on cellular uptake using imaging flow cytometry. Mikrochim Acta 2024;191:554. [PMID: 39168870 PMCID: PMC11339096 DOI: 10.1007/s00604-024-06631-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2024] [Accepted: 08/08/2024] [Indexed: 08/23/2024]
3
Ram AS, Matuszewska K, McKenna C, Petrik J, Oblak ML. Validation of a semi-quantitative scoring system and workflow for analysis of fluorescence quantification in companion animals. Front Vet Sci 2024;11:1392504. [PMID: 39144083 PMCID: PMC11322124 DOI: 10.3389/fvets.2024.1392504] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Accepted: 07/11/2024] [Indexed: 08/16/2024]  Open
4
Crilly NP, Zita MD, Beaver AK, Sysa-Shah P, Bhalodia A, Gabrielson K, Adamo L, Mugnier MR. A murine model of Trypanosoma brucei-induced myocarditis and cardiac dysfunction. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.10.05.560950. [PMID: 37873308 PMCID: PMC10592974 DOI: 10.1101/2023.10.05.560950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2023]
5
Sadiq A, Fert-Bober J. DCM-Spheroid Morphs Express PADs and Citrullinated Cytoskeletal Proteins. J Histochem Cytochem 2024;72:387-397. [PMID: 38752478 PMCID: PMC11179590 DOI: 10.1369/00221554241252862] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Accepted: 04/11/2024] [Indexed: 06/13/2024]  Open
6
Lee RM, Eisenman LR, Khuon S, Aaron JS, Chew TL. Believing is seeing - the deceptive influence of bias in quantitative microscopy. J Cell Sci 2024;137:jcs261567. [PMID: 38197776 DOI: 10.1242/jcs.261567] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2024]  Open
7
Kedziora KM, Stallaert W. Cell Cycle Mapping Using Multiplexed Immunofluorescence. Methods Mol Biol 2024;2740:243-262. [PMID: 38393480 DOI: 10.1007/978-1-0716-3557-5_15] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2024]
8
Uzhytchak M, Lunova M, Smolková B, Jirsa M, Dejneka A, Lunov O. Iron oxide nanoparticles trigger endoplasmic reticulum damage in steatotic hepatic cells. NANOSCALE ADVANCES 2023;5:4250-4268. [PMID: 37560414 PMCID: PMC10408607 DOI: 10.1039/d3na00071k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Accepted: 07/13/2023] [Indexed: 08/11/2023]
9
Helmbrecht H, Lin TJ, Janakiraman S, Decker K, Nance E. Prevalence and practices of immunofluorescent cell image processing: a systematic review. Front Cell Neurosci 2023;17:1188858. [PMID: 37545881 PMCID: PMC10400723 DOI: 10.3389/fncel.2023.1188858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Accepted: 07/06/2023] [Indexed: 08/08/2023]  Open
10
Uzhytchak M, Smolková B, Frtús A, Stupakov A, Lunova M, Scollo F, Hof M, Jurkiewicz P, Sullivan GJ, Dejneka A, Lunov O. Sensitivity of endogenous autofluorescence in HeLa cells to the application of external magnetic fields. Sci Rep 2023;13:10818. [PMID: 37402779 DOI: 10.1038/s41598-023-38015-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Accepted: 06/30/2023] [Indexed: 07/06/2023]  Open
11
Abrams B, Pengo T, Wee TL, Deagle RC, Vuillemin N, Callahan LM, Smith MA, Kubow KE, Girard AM, Rappoport JZ, Bayles CJ, Cameron LA, Cole R, Brown CM. Tissue-Like 3D Standard and Protocols for Microscope Quality Management. MICROSCOPY AND MICROANALYSIS : THE OFFICIAL JOURNAL OF MICROSCOPY SOCIETY OF AMERICA, MICROBEAM ANALYSIS SOCIETY, MICROSCOPICAL SOCIETY OF CANADA 2023;29:616-634. [PMID: 37749742 PMCID: PMC10617369 DOI: 10.1093/micmic/ozad014] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 11/30/2022] [Accepted: 01/24/2023] [Indexed: 09/27/2023]
12
Frtús A, Smolková B, Uzhytchak M, Lunova M, Jirsa M, Petrenko Y, Dejneka A, Lunov O. Mechanical Regulation of Mitochondrial Dynamics and Function in a 3D-Engineered Liver Tumor Microenvironment. ACS Biomater Sci Eng 2023;9:2408-2425. [PMID: 37001010 PMCID: PMC10170482 DOI: 10.1021/acsbiomaterials.2c01518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
13
Velayuthan LP, Moretto L, Tågerud S, Ušaj M, Månsson A. Virus-free transfection, transient expression, and purification of human cardiac myosin in mammalian muscle cells for biochemical and biophysical assays. Sci Rep 2023;13:4101. [PMID: 36907906 PMCID: PMC10008826 DOI: 10.1038/s41598-023-30576-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Accepted: 02/27/2023] [Indexed: 03/13/2023]  Open
14
Nawara TJ, Dean WF, Mattheyses AL. DrSTAR: Tracking real-time nanometer axial changes. Biophys J 2023;122:595-602. [PMID: 36659851 PMCID: PMC9989936 DOI: 10.1016/j.bpj.2023.01.019] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Revised: 11/23/2022] [Accepted: 01/17/2023] [Indexed: 01/21/2023]  Open
15
McIntyre LL, Lutes LK, Robey EA. Studying T Cell Development in Neonatal and Adult Thymic Slices. Methods Mol Biol 2023;2580:233-247. [PMID: 36374461 DOI: 10.1007/978-1-0716-2740-2_14] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
16
Practical considerations for quantitative light sheet fluorescence microscopy. Nat Methods 2022;19:1538-1549. [PMID: 36266466 DOI: 10.1038/s41592-022-01632-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Accepted: 08/31/2022] [Indexed: 12/25/2022]
17
McAlary L, Shephard VK, Sher M, Rice LJ, Yerbury JJ, Cashman NR, Plotkin SS. Assessment of protein inclusions in cultured cells using automated image analysis. STAR Protoc 2022;3:101748. [PMID: 36201320 PMCID: PMC9535320 DOI: 10.1016/j.xpro.2022.101748] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Revised: 07/18/2022] [Accepted: 09/13/2022] [Indexed: 11/19/2022]  Open
18
Kreider-Letterman G, Cooke M, Goicoechea SM, Kazanietz MG, Garcia-Mata R. Quantification of ruffle area and dynamics in live or fixed lung adenocarcinoma cells. STAR Protoc 2022;3:101437. [PMID: 35677607 PMCID: PMC9168141 DOI: 10.1016/j.xpro.2022.101437] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
19
Manifold B, Fu D. Quantitative Stimulated Raman Scattering Microscopy: Promises and Pitfalls. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2022;15:269-289. [PMID: 35300525 PMCID: PMC10083020 DOI: 10.1146/annurev-anchem-061020-015110] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
20
Castro-Alamancos MA. A System to Easily Manage Metadata in Biomedical Research Labs Based on Open-source Software. Bio Protoc 2022;12:e4404. [PMID: 35800459 PMCID: PMC9090580 DOI: 10.21769/bioprotoc.4404] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Revised: 02/14/2022] [Accepted: 03/19/2022] [Indexed: 12/29/2022]  Open
21
Reiche MA, Aaron JS, Boehm U, DeSantis MC, Hobson CM, Khuon S, Lee RM, Chew TL. When light meets biology - how the specimen affects quantitative microscopy. J Cell Sci 2022;135:274812. [PMID: 35319069 DOI: 10.1242/jcs.259656] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
22
Swift LH, Colarusso P. Fluorescence Microscopy: A Field Guide for Biologists. METHODS IN MOLECULAR BIOLOGY (CLIFTON, N.J.) 2022;2440:3-39. [PMID: 35218530 DOI: 10.1007/978-1-0716-2051-9_1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
23
Mitra-Behura S, Fiolka RP, Daetwyler S. Singularity Containers Improve Reproducibility and Ease of Use in Computational Image Analysis Workflows. FRONTIERS IN BIOINFORMATICS 2022;1:757291. [PMID: 36303730 PMCID: PMC9581025 DOI: 10.3389/fbinf.2021.757291] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2021] [Accepted: 10/11/2021] [Indexed: 11/13/2022]  Open
24
Pettygrove BA, Smith HJ, Pallister KB, Voyich JM, Stewart PS, Parker AE. Experimental Designs to Study the Aggregation and Colonization of Biofilms by Video Microscopy With Statistical Confidence. Front Microbiol 2022;12:785182. [PMID: 35095798 PMCID: PMC8793059 DOI: 10.3389/fmicb.2021.785182] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 12/06/2021] [Indexed: 01/14/2023]  Open
25
Rao TC, Nawara TJ, Mattheyses AL. Live-Cell Total Internal Reflection Fluorescence (TIRF) Microscopy to Investigate Protein Internalization Dynamics. Methods Mol Biol 2022;2438:45-58. [PMID: 35147934 DOI: 10.1007/978-1-0716-2035-9_3] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
26
Serre NBC, Fendrych M. ACORBA: Automated workflow to measure Arabidopsis thaliana root tip angle dynamics. QUANTITATIVE PLANT BIOLOGY 2022;3:e9. [PMID: 37077987 PMCID: PMC10095971 DOI: 10.1017/qpb.2022.4] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 03/07/2022] [Accepted: 03/30/2022] [Indexed: 05/03/2023]
27
Camus MD, Camus SM. Characterizing Membrane Traffic in the Early Secretory Pathway Using the RUSH Retention System. Methods Mol Biol 2022;2473:3-14. [PMID: 35819754 DOI: 10.1007/978-1-0716-2209-4_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
28
Sanchez-Arias JC, Carrier M, Frederiksen SD, Shevtsova O, McKee C, van der Slagt E, Gonçalves de Andrade E, Nguyen HL, Young PA, Tremblay MÈ, Swayne LA. A Systematic, Open-Science Framework for Quantification of Cell-Types in Mouse Brain Sections Using Fluorescence Microscopy. Front Neuroanat 2021;15:722443. [PMID: 34949993 PMCID: PMC8691181 DOI: 10.3389/fnana.2021.722443] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Accepted: 10/28/2021] [Indexed: 02/03/2023]  Open
29
Heilmann S, Semb H, Nyeng P. Quantifying spatial position in a branched structure in immunostained mouse tissue sections. STAR Protoc 2021;2:100806. [PMID: 34632415 PMCID: PMC8488404 DOI: 10.1016/j.xpro.2021.100806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]  Open
30
Ryan J, Pengo T, Rigano A, Llopis PM, Itano MS, Cameron LA, Marqués G, Strambio-De-Castillia C, Sanders MA, Brown CM. MethodsJ2: a software tool to capture metadata and generate comprehensive microscopy methods text. Nat Methods 2021;18:1414-1416. [PMID: 34654919 PMCID: PMC9488561 DOI: 10.1038/s41592-021-01290-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
31
Montero Llopis P, Senft RA, Ross-Elliott TJ, Stephansky R, Keeley DP, Koshar P, Marqués G, Gao YS, Carlson BR, Pengo T, Sanders MA, Cameron LA, Itano MS. Best practices and tools for reporting reproducible fluorescence microscopy methods. Nat Methods 2021;18:1463-1476. [PMID: 34099930 DOI: 10.1038/s41592-021-01156-w] [Citation(s) in RCA: 48] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Accepted: 04/15/2021] [Indexed: 02/04/2023]
32
Metodiev MD, Steven RT, Loizeau X, Takats Z, Bunch J. Modality Agnostic Model for Spatial Resolution in Mass Spectrometry Imaging: Application to MALDI MSI Data. Anal Chem 2021;93:15295-15305. [PMID: 34767361 DOI: 10.1021/acs.analchem.1c02470] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
33
Smolková B, MacCulloch T, Rockwood TF, Liu M, Henry SJW, Frtús A, Uzhytchak M, Lunova M, Hof M, Jurkiewicz P, Dejneka A, Stephanopoulos N, Lunov O. Protein Corona Inhibits Endosomal Escape of Functionalized DNA Nanostructures in Living Cells. ACS APPLIED MATERIALS & INTERFACES 2021;13:46375-46390. [PMID: 34569777 PMCID: PMC9590277 DOI: 10.1021/acsami.1c14401] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
34
Valli J, Sanderson J. Super-Resolution Fluorescence Microscopy Methods for Assessing Mouse Biology. Curr Protoc 2021;1:e224. [PMID: 34436832 DOI: 10.1002/cpz1.224] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
35
Wilson SL, Way GP, Bittremieux W, Armache JP, Haendel MA, Hoffman MM. Sharing biological data: why, when, and how. FEBS Lett 2021;595:847-863. [PMID: 33843054 PMCID: PMC10390076 DOI: 10.1002/1873-3468.14067] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
36
Adeniran BV, Bjarkadottir BD, Appeltant R, Lane S, Williams SA. Improved preservation of ovarian tissue morphology that is compatible with antigen detection using a fixative mixture of formalin and acetic acid. Hum Reprod 2021;36:1871-1890. [PMID: 33956944 PMCID: PMC8213453 DOI: 10.1093/humrep/deab075] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2019] [Revised: 02/13/2021] [Indexed: 11/15/2022]  Open
37
Jean-Alphonse FG, Sposini S. Confocal and TIRF microscopy based approaches to visualize arrestin trafficking in living cells. Methods Cell Biol 2021;166:179-203. [PMID: 34752332 DOI: 10.1016/bs.mcb.2021.06.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
38
Aaron J, Chew TL. A guide to accurate reporting in digital image processing - can anyone reproduce your quantitative analysis? J Cell Sci 2021;134:134/6/jcs254151. [PMID: 33785609 DOI: 10.1242/jcs.254151] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]  Open
39
Heddleston JM, Aaron JS, Khuon S, Chew TL. A guide to accurate reporting in digital image acquisition - can anyone replicate your microscopy data? J Cell Sci 2021;134:134/6/jcs254144. [PMID: 33785608 DOI: 10.1242/jcs.254144] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
40
Rogers A, Dulal N, Egan M. 4D Widefield Fluorescence Imaging of Appressorium Morphogenesis by Magnaporthe oryzae. Methods Mol Biol 2021;2356:87-96. [PMID: 34236679 DOI: 10.1007/978-1-0716-1613-0_7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
41
Suhr M, Lehmann C, Bauer CR, Bender T, Knopp C, Freckmann L, Öst Hansen B, Henke C, Aschenbrandt G, Kühlborn LK, Rheinländer S, Weber L, Marzec B, Hellkamp M, Wieder P, Sax U, Kusch H, Nussbeck SY. Menoci: lightweight extensible web portal enhancing data management for biomedical research projects. BMC Bioinformatics 2020;21:582. [PMID: 33334310 PMCID: PMC7745495 DOI: 10.1186/s12859-020-03928-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Accepted: 12/09/2020] [Indexed: 11/10/2022]  Open
42
Frtús A, Smolková B, Uzhytchak M, Lunova M, Jirsa M, Hof M, Jurkiewicz P, Lozinsky VI, Wolfová L, Petrenko Y, Kubinová Š, Dejneka A, Lunov O. Hepatic Tumor Cell Morphology Plasticity under Physical Constraints in 3D Cultures Driven by YAP-mTOR Axis. Pharmaceuticals (Basel) 2020;13:ph13120430. [PMID: 33260691 PMCID: PMC7759829 DOI: 10.3390/ph13120430] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2020] [Revised: 11/23/2020] [Accepted: 11/26/2020] [Indexed: 02/06/2023]  Open
43
Wait EC, Reiche MA, Chew TL. Hypothesis-driven quantitative fluorescence microscopy - the importance of reverse-thinking in experimental design. J Cell Sci 2020;133:133/21/jcs250027. [PMID: 33154172 DOI: 10.1242/jcs.250027] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
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Singh R, Dubey V, Wolfson D, Ahmad A, Butola A, Acharya G, Mehta DS, Basnet P, Ahluwalia BS. Quantitative assessment of morphology and sub-cellular changes in macrophages and trophoblasts during inflammation. BIOMEDICAL OPTICS EXPRESS 2020;11:3733-3752. [PMID: 33014563 PMCID: PMC7510918 DOI: 10.1364/boe.389350] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Revised: 05/14/2020] [Accepted: 05/21/2020] [Indexed: 05/06/2023]
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Sanderson J. Fundamentals of Microscopy. ACTA ACUST UNITED AC 2020;10:e76. [PMID: 32497416 DOI: 10.1002/cpmo.76] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Tepperman A, Zheng DJ, Taka MA, Vrieze A, Le Lam A, Heit B. Customizable live-cell imaging chambers for multimodal and multiplex fluorescence microscopy. Biochem Cell Biol 2020;98:612-623. [PMID: 32339465 DOI: 10.1139/bcb-2020-0064] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
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Iron Oxide Nanoparticle-Induced Autophagic Flux Is Regulated by Interplay between p53-mTOR Axis and Bcl-2 Signaling in Hepatic Cells. Cells 2020;9:cells9041015. [PMID: 32325714 PMCID: PMC7226334 DOI: 10.3390/cells9041015] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2020] [Revised: 04/10/2020] [Accepted: 04/15/2020] [Indexed: 02/07/2023]  Open
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Ortell KK, Switonski PM, Delaney JR. FairSubset: A tool to choose representative subsets of data for use with replicates or groups of different sample sizes. J Biol Methods 2019;6:e118. [PMID: 31583263 PMCID: PMC6761370 DOI: 10.14440/jbm.2019.299] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Revised: 08/04/2019] [Accepted: 08/04/2019] [Indexed: 11/23/2022]  Open
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Babkoff A, Cohen-Kfir E, Aharon H, Ronen D, Rosenberg M, Wiener R, Ravid S. A direct interaction between survivin and myosin II is required for cytokinesis. J Cell Sci 2019;132:132/14/jcs233130. [PMID: 31315909 DOI: 10.1242/jcs.233130] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2019] [Accepted: 06/14/2019] [Indexed: 02/05/2023]  Open
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Escorcia W, Shen KF, Yuan JP, Forsburg SL. Examination of Mitotic and Meiotic Fission Yeast Nuclear Dynamics by Fluorescence Live-cell Microscopy. J Vis Exp 2019:10.3791/59822. [PMID: 31282894 PMCID: PMC6701690 DOI: 10.3791/59822] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]  Open
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