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Wild AJ, Steiner FA, Kiene M, Tyborski N, Tung SY, Koehler T, Carminati A, Eder B, Groth J, Vahl WK, Wolfrum S, Lueders T, Laforsch C, Mueller CW, Vidal A, Pausch J. Unraveling root and rhizosphere traits in temperate maize landraces and modern cultivars: Implications for soil resource acquisition and drought adaptation. PLANT, CELL & ENVIRONMENT 2024; 47:2526-2541. [PMID: 38515431 DOI: 10.1111/pce.14898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Revised: 03/07/2024] [Accepted: 03/11/2024] [Indexed: 03/23/2024]
Abstract
A holistic understanding of plant strategies to acquire soil resources is pivotal in achieving sustainable food security. However, we lack knowledge about variety-specific root and rhizosphere traits for resource acquisition, their plasticity and adaptation to drought. We conducted a greenhouse experiment to phenotype root and rhizosphere traits (mean root diameter [Root D], specific root length [SRL], root tissue density, root nitrogen content, specific rhizosheath mass [SRM], arbuscular mycorrhizal fungi [AMF] colonization) of 16 landraces and 22 modern cultivars of temperate maize (Zea mays L.). Our results demonstrate that landraces and modern cultivars diverge in their root and rhizosphere traits. Although landraces follow a 'do-it-yourself' strategy with high SRLs, modern cultivars exhibit an 'outsourcing' strategy with increased mean Root Ds and a tendency towards increased root colonization by AMF. We further identified that SRM indicates an 'outsourcing' strategy. Additionally, landraces were more drought-responsive compared to modern cultivars based on multitrait response indices. We suggest that breeding leads to distinct resource acquisition strategies between temperate maize varieties. Future breeding efforts should increasingly target root and rhizosphere economics, with SRM serving as a valuable proxy for identifying varieties employing an outsourcing resource acquisition strategy.
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Affiliation(s)
- Andreas J Wild
- Agroecology, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, Germany
| | - Franziska A Steiner
- Soil Science, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Marvin Kiene
- Animal Ecology I, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, Germany
| | - Nicolas Tyborski
- Ecological Microbiology, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, Germany
| | - Shu-Yin Tung
- Institute for Agroecology and Organic Farming, Bavarian State Research Center for Agriculture, Freising, Germany
- School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Tina Koehler
- Soil Physics, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, Germany
- Physics of Soils and Terrestrial Ecosystems, Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland
| | - Andrea Carminati
- Physics of Soils and Terrestrial Ecosystems, Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland
| | - Barbara Eder
- Institute for Crop Science and Plant Breeding, Bavarian State Research Center for Agriculture (LfL), Freising, Germany
| | - Jennifer Groth
- Institute for Crop Science and Plant Breeding, Bavarian State Research Center for Agriculture (LfL), Freising, Germany
| | - Wouter K Vahl
- Institute for Crop Science and Plant Breeding, Bavarian State Research Center for Agriculture (LfL), Freising, Germany
| | - Sebastian Wolfrum
- Institute for Agroecology and Organic Farming, Bavarian State Research Center for Agriculture, Freising, Germany
| | - Tillmann Lueders
- Ecological Microbiology, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, Germany
| | - Christian Laforsch
- Animal Ecology I, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, Germany
| | - Carsten W Mueller
- Chair of Soil Science, Institute of Ecology, Technische Universitaet Berlin, Berlin, Germany
- Department of Geosciences and Natural Resource Management, University of Copenhagen, Copenhagen, Denmark
| | - Alix Vidal
- Soil Biology Group, Wageningen University, Wageningen, The Netherlands
| | - Johanna Pausch
- Agroecology, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, Germany
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2
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Voothuluru P, Wu Y, Sharp RE. Not so hidden anymore: Advances and challenges in understanding root growth under water deficits. THE PLANT CELL 2024; 36:1377-1409. [PMID: 38382086 PMCID: PMC11062450 DOI: 10.1093/plcell/koae055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 02/09/2024] [Accepted: 02/15/2024] [Indexed: 02/23/2024]
Abstract
Limited water availability is a major environmental factor constraining plant development and crop yields. One of the prominent adaptations of plants to water deficits is the maintenance of root growth that enables sustained access to soil water. Despite early recognition of the adaptive significance of root growth maintenance under water deficits, progress in understanding has been hampered by the inherent complexity of root systems and their interactions with the soil environment. We highlight selected milestones in the understanding of root growth responses to water deficits, with emphasis on founding studies that have shaped current knowledge and set the stage for further investigation. We revisit the concept of integrated biophysical and metabolic regulation of plant growth and use this framework to review central growth-regulatory processes occurring within root growth zones under water stress at subcellular to organ scales. Key topics include the primary processes of modifications of cell wall-yielding properties and osmotic adjustment, as well as regulatory roles of abscisic acid and its interactions with other hormones. We include consideration of long-recognized responses for which detailed mechanistic understanding has been elusive until recently, for example hydrotropism, and identify gaps in knowledge, ongoing challenges, and opportunities for future research.
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Affiliation(s)
- Priya Voothuluru
- Division of Plant Science and Technology, University of Missouri, Columbia, MO 65211, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
| | - Yajun Wu
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD 57007, USA
| | - Robert E Sharp
- Division of Plant Science and Technology, University of Missouri, Columbia, MO 65211, USA
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
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3
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Steiner FA, Wild AJ, Tyborski N, Tung SY, Koehler T, Buegger F, Carminati A, Eder B, Groth J, Hesse BD, Pausch J, Lüders T, Vahl WK, Wolfrum S, Mueller CW, Vidal A. Rhizosheath drought responsiveness is variety-specific and a key component of belowground plant adaptation. THE NEW PHYTOLOGIST 2024; 242:479-492. [PMID: 38418430 DOI: 10.1111/nph.19638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2023] [Accepted: 02/02/2024] [Indexed: 03/01/2024]
Abstract
Biophysicochemical rhizosheath properties play a vital role in plant drought adaptation. However, their integration into the framework of plant drought response is hampered by incomplete mechanistic understanding of their drought responsiveness and unknown linkage to intraspecific plant-soil drought reactions. Thirty-eight Zea mays varieties were grown under well-watered and drought conditions to assess the drought responsiveness of rhizosheath properties, such as soil aggregation, rhizosheath mass, net-rhizodeposition, and soil organic carbon distribution. Additionally, explanatory traits, including functional plant trait adaptations and changes in soil enzyme activities, were measured. Drought restricted soil structure formation in the rhizosheath and shifted plant-carbon from litter-derived organic matter in macroaggregates to microbially processed compounds in microaggregates. Variety-specific functional trait modifications determined variations in rhizosheath drought responsiveness. Drought responses of the plant-soil system ranged among varieties from maintaining plant-microbial interactions in the rhizosheath through accumulation of rhizodeposits, to preserving rhizosheath soil structure while increasing soil exploration through enhanced root elongation. Drought-induced alterations at the root-soil interface may hold crucial implications for ecosystem resilience in a changing climate. Our findings highlight that rhizosheath soil properties are an intrinsic component of plant drought response, emphasizing the need for a holistic concept of plant-soil systems in future research on plant drought adaptation.
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Affiliation(s)
- Franziska A Steiner
- Soil Science, TUM School of Life Sciences, Technical University of Munich, 85354, Freising, Germany
| | - Andreas J Wild
- Agroecology, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, 95447, Bayreuth, Germany
| | - Nicolas Tyborski
- Ecological Microbiology, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, 95448, Bayreuth, Germany
| | - Shu-Yin Tung
- Soil Science, TUM School of Life Sciences, Technical University of Munich, 85354, Freising, Germany
- Institute for Agroecology and Organic Farming, Bavarian State Research Center for Agriculture, 85354, Freising, Germany
| | - Tina Koehler
- Root-Soil Interaction, TUM School of Life Sciences, Technical University of Munich, 85354, Freising, Germany
| | - Franz Buegger
- Research Unit Environmental Simulation, Helmholtz Zentrum München (GmbH), German Research Center for Environmental Health, 85764, Neuherberg, Germany
| | - Andrea Carminati
- Physics of Soils and Terrestrial Ecosystems, Department of Environmental Systems Science, ETH Zurich, 8092, Zurich, Switzerland
| | - Barbara Eder
- Institute for Crop Science and Plant Breeding, Bavarian State Research Center for Agriculture, 85354, Freising, Germany
| | - Jennifer Groth
- Institute for Crop Science and Plant Breeding, Bavarian State Research Center for Agriculture, 85354, Freising, Germany
| | - Benjamin D Hesse
- Chair of Land Surface-Atmosphere Interactions, TUM School of Life Sciences, Technical University of Munich, 85354, Freising, Germany
- Department of Integrative Biology and Biodiversity Research, Institute of Botany, University of Natural Resources and Life Sciences, 1180, Vienna, Austria
| | - Johanna Pausch
- Agroecology, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, 95447, Bayreuth, Germany
| | - Tillmann Lüders
- Ecological Microbiology, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, 95448, Bayreuth, Germany
| | - Wouter K Vahl
- Institute for Crop Science and Plant Breeding, Bavarian State Research Center for Agriculture, 85354, Freising, Germany
| | - Sebastian Wolfrum
- Institute for Agroecology and Organic Farming, Bavarian State Research Center for Agriculture, 85354, Freising, Germany
| | - Carsten W Mueller
- Chair of Soil Science, Institute of Ecology, Technische Universität Berlin, 10587, Berlin, Germany
- Department for Geoscience and Natural Resource Management, University of Copenhagen, 1350, Copenhagen, Denmark
| | - Alix Vidal
- Soil Biology Group, Department of Environmental Sciences, Wageningen University, 6700, Wageningen, the Netherlands
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Quattrone A, Lopez-Guerrero M, Yadav P, Meier MA, Russo SE, Weber KA. Interactions between root hairs and the soil microbial community affect the growth of maize seedlings. PLANT, CELL & ENVIRONMENT 2024; 47:611-628. [PMID: 37974552 DOI: 10.1111/pce.14755] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2022] [Revised: 09/01/2023] [Accepted: 10/18/2023] [Indexed: 11/19/2023]
Abstract
Root hairs are considered important for rhizosphere formation, which affects root system functioning. Through interactions with soil microorganisms mediated by root exudation, root hairs may affect the phenotypes and growth of young plants. We tested this hypothesis by integrating results from two experiments: (1) a factorial greenhouse seedling experiment with Zea mays B73-wt and its root-hairless mutant, B73-rth3, grown in live and autoclaved soil, quantifying 15 phenotypic traits, seven growth rates, and soil microbiomes and (2) a semi-hydroponic system quantifying root exudation of maize genotypes. Possibly as compensation for lacking root hairs, B73-rth3 seedlings allocated more biomass to roots and grew slower than B73-wt seedlings in live soil, whereas B73-wt seedlings grew slowest in autoclaved soil, suggesting root hairs can be costly and their benefits were realized with more complete soil microbial assemblages. There were substantial differences in root exudation between genotypes and in rhizosphere versus non-rhizosphere microbiomes. The microbial taxa enriched in the presence of root hairs generally enhanced growth compared to taxa enriched in their absence. Our findings suggest the root hairs' adaptive value extends to plant-microbe interactions mediated by root exudates, affecting plant phenotypes, and ultimately, growth.
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Affiliation(s)
- Amanda Quattrone
- Complex Biosystems Ph.D. program, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
- School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
- Center for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
| | | | - Pooja Yadav
- School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
| | - Michael A Meier
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
- Rancho Biosciences, San Diego, California, USA
| | - Sabrina E Russo
- School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
- Center for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
| | - Karrie A Weber
- School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
- Department of Earth and Atmospheric Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
- Daugherty Water for Food Institute, University of Nebraska, Lincoln, Nebraska, USA
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5
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Nasr Esfahani M, Sonnewald U. Unlocking dynamic root phenotypes for simultaneous enhancement of water and phosphorus uptake. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 207:108386. [PMID: 38280257 DOI: 10.1016/j.plaphy.2024.108386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 01/08/2024] [Accepted: 01/17/2024] [Indexed: 01/29/2024]
Abstract
Phosphorus (P) and water are crucial for plant growth, but their availability is challenged by climate change, leading to reduced crop production and global food security. In many agricultural soils, crop productivity is confronted by both water and P limitations. The diminished soil moisture decreases available P due to reduced P diffusion, and inadequate P availability diminishes tissue water status through modifications in stomatal conductance and a decrease in root hydraulic conductance. P and water display contrasting distributions in the soil, with P being concentrated in the topsoil and water in the subsoil. Plants adapt to water- and P-limited environments by efficiently exploring localized resource hotspots of P and water through the adaptation of their root system. Thus, developing cultivars with improved root architecture is crucial for accessing and utilizing P and water from arid and P-deficient soils. To meet this goal, breeding towards multiple advantageous root traits can lead to better cultivars for water- and P-limited environments. This review discusses the interplay of P and water availability and highlights specific root traits that enhance the exploration and exploitation of optimal resource-rich soil strata while reducing metabolic costs. We propose root ideotype models, including 'topsoil foraging', 'subsoil foraging', and 'topsoil/subsoil foraging' for maize (monocot) and common bean (dicot). These models integrate beneficial root traits and guide the development of water- and P-efficient cultivars for challenging environments.
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Affiliation(s)
- Maryam Nasr Esfahani
- Department of Biology, Chair of Biochemistry, Friedrich-Alexander-University Erlangen-Nuremberg, Erlangen, Germany.
| | - Uwe Sonnewald
- Department of Biology, Chair of Biochemistry, Friedrich-Alexander-University Erlangen-Nuremberg, Erlangen, Germany.
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6
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Affortit P, Ahmed MA, Grondin A, Delzon S, Carminati A, Laplaze L. Keep in touch: the soil-root hydraulic continuum and its role in drought resistance in crops. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:584-593. [PMID: 37549338 DOI: 10.1093/jxb/erad312] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Accepted: 08/04/2023] [Indexed: 08/09/2023]
Abstract
Drought is a major threat to food security worldwide. Recently, the root-soil interface has emerged as a major site of hydraulic resistance during water stress. Here, we review the impact of soil drying on whole-plant hydraulics and discuss mechanisms by which plants can adapt by modifying the properties of the rhizosphere either directly or through interactions with the soil microbiome.
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Affiliation(s)
- Pablo Affortit
- DIADE, IRD, CIRAD, Université de Montpellier, Montpellier, France
| | - Mutez Ali Ahmed
- Root-Soil Interaction, School of Life Science, Technical University of Munich, Freising, Germany
| | | | | | - Andrea Carminati
- Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland
| | - Laurent Laplaze
- DIADE, IRD, CIRAD, Université de Montpellier, Montpellier, France
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7
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Santangeli M, Steininger-Mairinger T, Vetterlein D, Hann S, Oburger E. Maize (Zea mays L.) root exudation profiles change in quality and quantity during plant development - A field study. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2024; 338:111896. [PMID: 37838155 DOI: 10.1016/j.plantsci.2023.111896] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Revised: 10/02/2023] [Accepted: 10/10/2023] [Indexed: 10/16/2023]
Abstract
Deciphering root exudate composition of soil-grown plants is considered a crucial step to better understand plant-soil-microbe interactions affecting plant growth performance. In this study, two genotypes of Zea mays L. (WT, rth3) differing in root hair elongation were grown in the field in two substrates (sand, loam) in custom-made, perforated columns inserted into the field plots. Root exudates were collected at different plant developmental stages (BBCH 14, 19, 59, 83) using a soil-hydroponic-hybrid exudation sampling approach. Exudates were characterized by LC-MS based non-targeted metabolomics, as well as by photometric assays targeting total dissolved organic carbon, soluble carbohydrates, proteins, amino acids, and phenolics. Results showed that plant developmental stage was the main driver shaping both the composition and quantity of exuded compounds. Carbon (C) exudation per plant increased with increasing biomass production over time, while C exudation rate per cm² root surface area h-1 decreased with plant maturity. Furthermore, exudation rates were higher in the substrate with lower nutrient mobility (i.e., loam). Surprisingly, we observed higher exudation rates in the root hairless rth3 mutant compared to the root hair-forming WT sibling, though exudate metabolite composition remained similar. Our results highlight the impact of plant developmental stage on the plant-soil-microbe interplay.
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Affiliation(s)
- Michael Santangeli
- University of Natural Resources and Life Sciences, Vienna, Department of Forest and Soil Science, Institute of Soil Research, 3430 Tulln an der Donau, Austria; University of Natural Resources and Life Sciences, Vienna, Department of Chemistry, Institute of Analytical Chemistry, 1190 Vienna, Austria
| | - Teresa Steininger-Mairinger
- University of Natural Resources and Life Sciences, Vienna, Department of Chemistry, Institute of Analytical Chemistry, 1190 Vienna, Austria
| | - Doris Vetterlein
- Department of Soil System Science, UFZ, 06120 Halle/Saale, Germany; Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, 06120 Halle/Saale, Germany
| | - Stephan Hann
- University of Natural Resources and Life Sciences, Vienna, Department of Chemistry, Institute of Analytical Chemistry, 1190 Vienna, Austria
| | - Eva Oburger
- University of Natural Resources and Life Sciences, Vienna, Department of Forest and Soil Science, Institute of Soil Research, 3430 Tulln an der Donau, Austria.
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8
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Duddek P, Ahmed MA, Javaux M, Vanderborght J, Lovric G, King A, Carminati A. The effect of root hairs on root water uptake is determined by root-soil contact and root hair shrinkage. THE NEW PHYTOLOGIST 2023; 240:2484-2497. [PMID: 37525254 DOI: 10.1111/nph.19144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Accepted: 06/29/2023] [Indexed: 08/02/2023]
Abstract
The effect of root hairs on water uptake remains controversial. In particular, the key root hair and soil parameters that determine their importance have been elusive. We grew maize plants (Zea mays) in microcosms and scanned them using synchrotron-based X-ray computed microtomography. By means of image-based modelling, we investigated the parameters determining the effectiveness of root hairs in root water uptake. We explicitly accounted for rhizosphere features (e.g. root-soil contact and pore structure) and took root hair shrinkage of dehydrated root hairs into consideration. Our model suggests that > 85% of the variance in root water uptake is explained by the hair-induced increase in root-soil contact. In dry soil conditions, root hair shrinkage reduces the impact of hairs substantially. We conclude that the effectiveness of root hairs on root water uptake is determined by the hair-induced increase in root-soil contact and root hair shrinkage. Although the latter clearly reduces the effect of hairs on water uptake, our model still indicated facilitation of water uptake by root hairs at soil matric potentials from -1 to -0.1 MPa. Our findings provide new avenues towards a mechanistic understanding of the role of root hairs on water uptake.
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Affiliation(s)
- Patrick Duddek
- Department of Environmental Systems Science, Physics of Soils and Terrestrial Ecosystems, Institute of Terrestrial Ecosystems, ETH Zürich, Universitätsstrasse 16, 8092, Zurich, Switzerland
| | - Mutez Ali Ahmed
- Root-Soil Interactions, School of Life Sciences, Technical University of Munich, D-85354, Freising, Germany
| | - Mathieu Javaux
- Agrosphere Institute, IBG-3, Forschungszentrum Jülich GmbH, 52425, Jülich, Germany
| | - Jan Vanderborght
- Agrosphere Institute, IBG-3, Forschungszentrum Jülich GmbH, 52425, Jülich, Germany
| | - Goran Lovric
- Swiss Light Source, Paul Scherrer Institute, Forschungsstrasse 111, 5232, Villigen, Switzerland
| | - Andrew King
- Synchrotron SOLEIL, L'Orme des Merisiers, 91192, Gif-sur-Yvette Cedex, France
| | - Andrea Carminati
- Department of Environmental Systems Science, Physics of Soils and Terrestrial Ecosystems, Institute of Terrestrial Ecosystems, ETH Zürich, Universitätsstrasse 16, 8092, Zurich, Switzerland
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Yang S, Xu N, Chen N, Qi J, Salam A, Wu J, Liu Y, Huang L, Liu B, Gan Y. OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2023; 136:108. [PMID: 37039968 DOI: 10.1007/s00122-023-04356-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2023] [Accepted: 04/04/2023] [Indexed: 05/13/2023]
Abstract
KEY MESSAGE Root hairs are required for water and nutrient acquisition in plants. Here, we report a novel mechanism that OsUGE1 is negatively controlled by OsGRF6 to regulate root hair elongation in rice. Root hairs are tubular outgrowths generated by the root epidermal cells. They effectively enlarge the soil-root contact area and play essential roles for nutrient and water absorption. Here, in this study, we demonstrated that the Oryza sativa UDP-glucose 4-epimerase 1-like (OsUGE1) negatively regulated root hair elongation and was directly targeted by Oryza sativa growth regulating factor 6 (OsGRF6). Knockout mutants of OsUGE1 using CRISPR-Cas9 technology showed longer root hairs than those of wild type. In contrast, overexpression lines of OsUGE1 displayed shorter root hair compared with those of wild type. GUS staining showed that it could specifically express in root hair. Subcellular localization analysis indicates that OsUGE1 is located in endoplasmic reticulum, nucleus and plasma membrane. More importantly, ChIP-qPCR, Yeast-one-hybrid and BiFC experiments revealed that OsGRF6 could bind to the promoter of OsUGE1. Furthermore, knockout mutants of OsGRF6 showed shorter root hair than those of wild type, and OsGRF6 dominantly expressed in root. In addition, the expression level of OsUGE1 is significantly downregulated in Osgrf6 mutant. Taken together, our study reveals a novel pathway that OsUGE1 is negatively controlled by OsGRF6 to regulate root hair elongation in rice.
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Affiliation(s)
- Shuaiqi Yang
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310000, China
| | - Nuo Xu
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310000, China
| | - Nana Chen
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310000, China
| | - Jiaxuan Qi
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310000, China
| | - Abdul Salam
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310000, China
| | - Junyu Wu
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310000, China
| | - Yihua Liu
- College of Agriculture and Forestry Sciences, Linyi University, Linyi, 276000, Shandong, China
| | - Linli Huang
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310000, China
| | - Bohan Liu
- College of Agriculture, Hunan Agricultural University, Changsha, 410128, China
| | - Yinbo Gan
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310000, China.
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10
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Lohse M, Santangeli M, Steininger-Mairinger T, Oburger E, Reemtsma T, Lechtenfeld OJ, Hann S. The effect of root hairs on exudate composition: a comparative non-targeted metabolomics approach. Anal Bioanal Chem 2023; 415:823-840. [PMID: 36547703 PMCID: PMC9883335 DOI: 10.1007/s00216-022-04475-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Revised: 11/10/2022] [Accepted: 12/05/2022] [Indexed: 12/24/2022]
Abstract
Root exudation is a major pathway of organic carbon input into soils. It affects soil physical properties, element solubility as well as speciation, and impacts the microbial community in the rhizosphere. Root exudates contain a large number of primary and secondary plant metabolites, and the amount and composition are highly variable depending on plant species and developmental stage. Detailed information about exudate composition will allow for a better understanding of exudate-driven rhizosphere processes and their feedback loops. Although non-targeted metabolomics by high-resolution mass spectrometry is an established tool to characterize root exudate composition, the extent and depth of the information obtained depends strongly on the analytical approach applied. Here, two genotypes of Zea mays L., differing in root hair development, were used to compare six mass spectrometric approaches for the analysis of root exudates. Reversed-phase liquid chromatography and hydrophilic interaction liquid chromatography combined with time-of-flight mass spectrometry (LC-TOF-MS), as well as direct infusion Fourier-transform ion cyclotron resonance mass spectrometry (DI-FT-ICR-MS), were applied with positive and negative ionization mode. By using the same statistical workflow, the six approaches resulted in different numbers of detected molecular features, ranging from 176 to 889, with a fraction of 48 to 69% of significant features (fold change between the two genotypes of > 2 and p-value < 0.05). All approaches revealed the same trend between genotypes, namely up-regulation of most metabolites in the root hair defective mutant (rth3). These results were in agreement with the higher total carbon and nitrogen exudation rate of the rth3-mutant as compared to the corresponding wild-type maize (WT). However, only a small fraction of features were commonly found across the different analytical approaches (20-79 features, 13-31% of the rth3-mutant up-regulated molecular formulas), highlighting the need for different mass spectrometric approaches to obtain a more comprehensive view into the composition of root exudates. In summary, 111 rth3-mutant up-regulated compounds (92 different molecular formulas) were detected with at least two different analytical approaches, while no WT up-regulated compound was found by both, LC-TOF-MS and DI-FT-ICR-MS. Zea mays L. exudate features obtained with multiple analytical approaches in our study were matched against the metabolome database of Zea mays L. (KEGG) and revealed 49 putative metabolites based on their molecular formula.
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Affiliation(s)
- Martin Lohse
- Department of Analytical Chemistry, Helmholtz Centre for Environmental Research - UFZ, 04318, Leipzig, Germany
| | - Michael Santangeli
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences, Vienna (BOKU), 3430, Tulln an Der Donau, Austria
- Department of Chemistry, Institute of Analytical Chemistry, University of Natural Resources and Life Sciences, Vienna (BOKU), 1190, Vienna, Austria
| | - Teresa Steininger-Mairinger
- Department of Chemistry, Institute of Analytical Chemistry, University of Natural Resources and Life Sciences, Vienna (BOKU), 1190, Vienna, Austria
| | - Eva Oburger
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences, Vienna (BOKU), 3430, Tulln an Der Donau, Austria.
| | - Thorsten Reemtsma
- Department of Analytical Chemistry, Helmholtz Centre for Environmental Research - UFZ, 04318, Leipzig, Germany
- Institute of Analytical Chemistry, University of Leipzig, 04103, Leipzig, Germany
| | - Oliver J Lechtenfeld
- Department of Analytical Chemistry, Helmholtz Centre for Environmental Research - UFZ, 04318, Leipzig, Germany.
- ProVIS, Centre for Chemical Microscopy, Helmholtz Centre for Environmental Research, UFZ, 04318, Leipzig, Germany.
| | - Stephan Hann
- Department of Chemistry, Institute of Analytical Chemistry, University of Natural Resources and Life Sciences, Vienna (BOKU), 1190, Vienna, Austria
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11
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Hanlon MT, Vejchasarn P, Fonta JE, Schneider HM, McCouch SR, Brown KM. Genome wide association analysis of root hair traits in rice reveals novel genomic regions controlling epidermal cell differentiation. BMC PLANT BIOLOGY 2023; 23:6. [PMID: 36597029 PMCID: PMC9811729 DOI: 10.1186/s12870-022-04026-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 12/22/2022] [Indexed: 06/17/2023]
Abstract
BACKGROUND Genome wide association (GWA) studies demonstrate linkages between genetic variants and traits of interest. Here, we tested associations between single nucleotide polymorphisms (SNPs) in rice (Oryza sativa) and two root hair traits, root hair length (RHL) and root hair density (RHD). Root hairs are outgrowths of single cells on the root epidermis that aid in nutrient and water acquisition and have also served as a model system to study cell differentiation and tip growth. Using lines from the Rice Diversity Panel-1, we explored the diversity of root hair length and density across four subpopulations of rice (aus, indica, temperate japonica, and tropical japonica). GWA analysis was completed using the high-density rice array (HDRA) and the rice reference panel (RICE-RP) SNP sets. RESULTS We identified 18 genomic regions related to root hair traits, 14 of which related to RHD and four to RHL. No genomic regions were significantly associated with both traits. Two regions overlapped with previously identified quantitative trait loci (QTL) associated with root hair density in rice. We identified candidate genes in these regions and present those with previously published expression data relevant to root hair development. We re-phenotyped a subset of lines with extreme RHD phenotypes and found that the variation in RHD was due to differences in cell differentiation, not cell size, indicating genes in an associated genomic region may influence root hair cell fate. The candidate genes that we identified showed little overlap with previously characterized genes in rice and Arabidopsis. CONCLUSIONS Root hair length and density are quantitative traits with complex and independent genetic control in rice. The genomic regions described here could be used as the basis for QTL development and further analysis of the genetic control of root hair length and density. We present a list of candidate genes involved in root hair formation and growth in rice, many of which have not been previously identified as having a relation to root hair growth. Since little is known about root hair growth in grasses, these provide a guide for further research and crop improvement.
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Affiliation(s)
- Meredith T Hanlon
- Department of Plant Science, The Pennsylvania State University, 102 Tyson Building, University Park, PA, 16802, USA
- Intercollege Graduate Degree Program in Plant Biology, Huck Institutes of the Life Sciences, Penn State University, University Park, PA, 16802, USA
| | - Phanchita Vejchasarn
- Department of Plant Science, The Pennsylvania State University, 102 Tyson Building, University Park, PA, 16802, USA
- Rice Department, Ministry of Agriculture, Ubon Ratchathani Rice Research Center, Ubon Ratchathani, 34000, Thailand
| | - Jenna E Fonta
- Department of Plant Science, The Pennsylvania State University, 102 Tyson Building, University Park, PA, 16802, USA
- Intercollege Graduate Degree Program in Plant Biology, Huck Institutes of the Life Sciences, Penn State University, University Park, PA, 16802, USA
| | - Hannah M Schneider
- Department of Plant Science, The Pennsylvania State University, 102 Tyson Building, University Park, PA, 16802, USA
- Centre for Crop Systems Analysis, Wageningen University & Research, Wageningen, the Netherlands
| | - Susan R McCouch
- Section of Plant Breeding and Genetics, School of Integrated Plant Sciences, Cornell University, Ithaca, NY, 14853-1901, USA
- Biological Statistics and Computational Biology, Cornell University, Ithaca, NY, 14853-1901, USA
| | - Kathleen M Brown
- Department of Plant Science, The Pennsylvania State University, 102 Tyson Building, University Park, PA, 16802, USA.
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12
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Aslam MM, Karanja JK, Dodd IC, Waseem M, Weifeng X. Rhizosheath: An adaptive root trait to improve plant tolerance to phosphorus and water deficits? PLANT, CELL & ENVIRONMENT 2022; 45:2861-2874. [PMID: 35822342 PMCID: PMC9544408 DOI: 10.1111/pce.14395] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Revised: 07/07/2022] [Accepted: 07/11/2022] [Indexed: 06/09/2023]
Abstract
Drought and nutrient limitations adversely affect crop yields, with below-ground traits enhancing crop production in these resource-poor environments. This review explores the interacting biological, chemical and physical factors that determine rhizosheath (soil adhering to the root system) development, and its influence on plant water uptake and phosphorus acquisition in dry soils. Identification of quantitative trait loci for rhizosheath development indicate it is genetically determined, but the microbial community also directly (polysaccharide exudation) and indirectly (altered root hair development) affect its extent. Plants with longer and denser root hairs had greater rhizosheath development and increased P uptake efficiency. Moreover, enhanced rhizosheath formation maintains contact at the root-soil interface thereby assisting water uptake from drying soil, consequently improving plant survival in droughted environments. Nevertheless, it can be difficult to determine if rhizosheath development is a cause or consequence of improved plant adaptation to dry and nutrient-depleted soils. Does rhizosheath development directly enhance plant water and phosphorus use, or do other tolerance mechanisms allow plants to invest more resources in rhizosheath development? Much more work is required on the interacting genetic, physical, biochemical and microbial mechanisms that determine rhizosheath development, to demonstrate that selection for rhizosheath development is a viable crop improvement strategy.
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Affiliation(s)
- Mehtab Muhammad Aslam
- Center for Plant Water‐Use and Nutrition Regulation, College of Resource and EnvironmentFujian Agriculture and Forestry UniversityFuzhouFujianChina
- College of AgricultureYangzhou UniversityYangzhouJiangsuChina
- State Key Laboratory of Agrobiotechnology, School of Life SciencesThe Chinese University of Hong KongShatinHong Kong
| | - Joseph K. Karanja
- Center for Plant Water‐Use and Nutrition Regulation, College of Resource and EnvironmentFujian Agriculture and Forestry UniversityFuzhouFujianChina
| | - Ian C. Dodd
- The Lancaster Environment CentreLancaster UniversityLancasterUK
| | | | - Xu Weifeng
- Center for Plant Water‐Use and Nutrition Regulation, College of Resource and EnvironmentFujian Agriculture and Forestry UniversityFuzhouFujianChina
- College of AgricultureYangzhou UniversityYangzhouJiangsuChina
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13
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Galloway AF, Akhtar J, Burak E, Marcus SE, Field KJ, Dodd IC, Knox P. Altered properties and structures of root exudate polysaccharides in a root hairless mutant of barley. PLANT PHYSIOLOGY 2022; 190:1214-1227. [PMID: 35876808 PMCID: PMC9516773 DOI: 10.1093/plphys/kiac341] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/20/2022] [Accepted: 06/29/2022] [Indexed: 06/15/2023]
Abstract
Root exudates and rhizosheaths of attached soil are important features of growing roots. To elucidate factors involved in rhizosheath formation, wild-type (WT) barley (Hordeum vulgare L. cv. Pallas) and a root hairless mutant, bald root barley (brb), were investigated with a combination of physiological, biochemical, and immunochemical assays. When grown in soil, WT barley roots bound ∼5-fold more soil than brb per unit root length. High molecular weight (HMW) polysaccharide exudates of brb roots had less soil-binding capacity than those of WT root exudates. Carbohydrate and glycan monoclonal antibody analyses of HMW polysaccharide exudates indicated differing glycan profiles. Relative to WT plants, root exudates of brb had reduced signals for arabinogalactan-protein (AGP), extensin, and heteroxylan epitopes. In contrast, the root exudate of 2-week-old brb plants contained ∼25-fold more detectable xyloglucan epitope relative to WT. Root system immunoprints confirmed the higher levels of release of the xyloglucan epitope from brb root apices and root axes relative to WT. Epitope detection with anion-exchange chromatography indicated that the increased detection of xyloglucan in brb exudates was due to enhanced abundance of a neutral polymer. Conversely, brb root exudates contained decreased amounts of an acidic polymer, with soil-binding properties, containing the xyloglucan epitope and glycoprotein and heteroxylan epitopes relative to WT. We, therefore, propose that, in addition to physically structuring soil particles, root hairs facilitate rhizosheath formation by releasing a soil-binding polysaccharide complex.
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Affiliation(s)
- Andrew F Galloway
- Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - Jumana Akhtar
- Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - Emma Burak
- Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, UK
| | - Susan E Marcus
- Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - Katie J Field
- Plants, Photosynthesis and Soil, School of Biosciences, University of Sheffield, Sheffield S10 2TN, UK
| | - Ian C Dodd
- Author for correspondence: (I.C.D.); (P.K.)
| | - Paul Knox
- Author for correspondence: (I.C.D.); (P.K.)
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14
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Hallett PD, Marin M, Bending GD, George TS, Collins CD, Otten W. Building soil sustainability from root-soil interface traits. TRENDS IN PLANT SCIENCE 2022; 27:688-698. [PMID: 35168900 DOI: 10.1016/j.tplants.2022.01.010] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Revised: 01/06/2022] [Accepted: 01/20/2022] [Indexed: 06/14/2023]
Abstract
Great potential exists to harness plant traits at the root-soil interface, mainly rhizodeposition and root hairs, to 'build' soils with better structure that can trap more carbon and resources, resist climate stresses, and promote a healthy microbiome. These traits appear to have been preserved in modern crop varieties, but scope exists to improve them further because they vary considerably between genotypes and respond to environmental conditions. From emerging evidence, rhizodeposition can act as a disperser, aggregator, and/or hydrogel in soil, and root hairs expand rhizosheath size. Future research should explore impacts of selecting these traits on plants and soils concurrently, expanding from model plants to commercial genotypes, and observing whether impacts currently limited to glasshouse studies occur in the field.
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Affiliation(s)
- Paul D Hallett
- School of Biological Sciences, University of Aberdeen, Aberdeen, AB24 3UU, UK.
| | - Maria Marin
- School of Biological Sciences, University of Aberdeen, Aberdeen, AB24 3UU, UK
| | - Gary D Bending
- School of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK
| | - Timothy S George
- Ecological Sciences Group, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
| | - Chris D Collins
- Department of Geography and Environmental Science, University of Reading, Reading RG6 6DW, UK
| | - Wilfred Otten
- Cranfield Soil and Agrifood Institute, College Road, Cranfield, MK43 0AL, UK
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15
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Duddek P, Carminati A, Koebernick N, Ohmann L, Lovric G, Delzon S, Rodriguez‐Dominguez CM, King A, Ahmed MA. The impact of drought-induced root and root hair shrinkage on root-soil contact. PLANT PHYSIOLOGY 2022; 189:1232-1236. [PMID: 35325215 PMCID: PMC9237671 DOI: 10.1093/plphys/kiac144] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Accepted: 03/05/2022] [Indexed: 05/16/2023]
Abstract
Although root hairs significantly increased root–soil contact, in maize, their shrinkage during soil drying is initiated at relatively high soil matric potentials (between −10 and −310 kPa).
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Affiliation(s)
- Patrick Duddek
- Physics of Soils and Terrestrial Ecosystems, Department of Environmental Systems Science, Institute of Terrestrial Ecosystems, ETH Zürich, Universitätsstrasse 16, 8092 Zurich, Switzerland
- Chair of Soil Physics, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Universitätstrasse 30, 95447 Bayreuth, Germany
| | - Andrea Carminati
- Physics of Soils and Terrestrial Ecosystems, Department of Environmental Systems Science, Institute of Terrestrial Ecosystems, ETH Zürich, Universitätsstrasse 16, 8092 Zurich, Switzerland
| | - Nicolai Koebernick
- Soil Science and Soil Protection, Martin Luther University Halle-Wittenberg, Von-Seckendorff-Platz 3, 06120 Halle (Saale), Germany
| | - Luise Ohmann
- Department of Soil System Science, Helmholtz Centre for Environmental Research, Theodor-Lieser-Str. 4, 06120 Halle (Saale), Germany
| | - Goran Lovric
- Swiss Light Source, Paul Scherrer Institute, Forschungsstrasse 111, 5232 Villigen, Switzerland
| | - Sylvain Delzon
- BIOGECO, INRA, Univ. Bordeaux, Allée Geoffroy St-Hilaire, 33615 Pessac, France
| | | | - Andrew King
- Synchrotron SOLEIL, L’Orme des Merisiers, 91192 Gif-sur-Yvette Cedex, France
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16
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Cai G, Ahmed MA. The role of root hairs in water uptake: recent advances and future perspectives. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:3330-3338. [PMID: 35323893 DOI: 10.1093/jxb/erac114] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Accepted: 03/14/2022] [Indexed: 06/14/2023]
Abstract
Sufficient water is essential for plant growth and production. Root hairs connect roots to the soil, extend the effective root radius, and greatly enlarge the absorbing surface area. Although the efficacy of root hairs in nutrient uptake, especially phosphorus, has been well recognized, their role in water uptake remains contentious. Here we review recent advances in this field, discuss the factors affecting the role of root hairs in water uptake, and propose future directions. We argue that root hair length and shrinkage, in response to soil drying, explain the apparently contradictory evidence currently available. Our analysis revealed that shorter and vulnerable root hairs (i.e. rice and maize) made little, if any, contribution to root water uptake. In contrast, relatively longer root hairs (i.e. barley) had a clear influence on root water uptake, transpiration, and hence plant response to soil drying. We conclude that the role of root hairs in water uptake is species (and probably soil) specific. We propose that a holistic understanding of the efficacy of root hairs in water uptake will require detailed studies of root hair length, turnover, and shrinkage in different species and contrasting soil textures.
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Affiliation(s)
- Gaochao Cai
- Chair of Soil Physics, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, D-95444, Bayreuth, Germany
| | - Mutez Ali Ahmed
- Chair of Soil Physics, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, D-95444, Bayreuth, Germany
- Department of Land, Air and Water Resources, University of California Davis, Davis, CA 95616, USA
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17
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Wang L, Rengel Z, Zhang K, Jin K, Lyu Y, Zhang L, Cheng L, Zhang F, Shen J. Ensuring future food security and resource sustainability: insights into the rhizosphere. iScience 2022; 25:104168. [PMID: 35434553 PMCID: PMC9010633 DOI: 10.1016/j.isci.2022.104168] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
Feeding the world’s growing population requires continuously increasing crop yields with less fertilizers and agrochemicals on limited land. Focusing on plant belowground traits, especially root-soil-microbe interactions, holds a great promise for overcoming this challenge. The belowground root-soil-microbe interactions are complex and involve a range of physical, chemical, and biological processes that influence nutrient-use efficiency, plant growth and health. Understanding, predicting, and manipulating these rhizosphere processes will enable us to harness the relevant interactions to improve plant productivity and nutrient-use efficiency. Here, we review the recent progress and challenges in root-soil-microbe interactions. We also highlight how root-soil-microbe interactions could be manipulated to ensure food security and resource sustainability in a changing global climate, with an emphasis on reducing our dependence on fertilizers and agrochemicals.
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Affiliation(s)
- Liyang Wang
- Department of Plant Nutrition, College of Resources and Environmental Sciences, Key Laboratory of Plant-Soil Interactions, Ministry of Education, National Academy of Agriculture Green Development, China Agricultural University, Beijing 100193, PR China
| | - Zed Rengel
- Soil Science & Plant Nutrition, UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA 6009, Australia.,Institute for Adriatic Crops and Karst Reclamation, Split 21000, Croatia
| | - Kai Zhang
- Department of Plant Nutrition, College of Resources and Environmental Sciences, Key Laboratory of Plant-Soil Interactions, Ministry of Education, National Academy of Agriculture Green Development, China Agricultural University, Beijing 100193, PR China
| | - Kemo Jin
- Department of Plant Nutrition, College of Resources and Environmental Sciences, Key Laboratory of Plant-Soil Interactions, Ministry of Education, National Academy of Agriculture Green Development, China Agricultural University, Beijing 100193, PR China
| | - Yang Lyu
- Department of Plant Nutrition, College of Resources and Environmental Sciences, Key Laboratory of Plant-Soil Interactions, Ministry of Education, National Academy of Agriculture Green Development, China Agricultural University, Beijing 100193, PR China
| | - Lin Zhang
- Department of Plant Nutrition, College of Resources and Environmental Sciences, Key Laboratory of Plant-Soil Interactions, Ministry of Education, National Academy of Agriculture Green Development, China Agricultural University, Beijing 100193, PR China
| | - Lingyun Cheng
- Department of Plant Nutrition, College of Resources and Environmental Sciences, Key Laboratory of Plant-Soil Interactions, Ministry of Education, National Academy of Agriculture Green Development, China Agricultural University, Beijing 100193, PR China
| | - Fusuo Zhang
- Department of Plant Nutrition, College of Resources and Environmental Sciences, Key Laboratory of Plant-Soil Interactions, Ministry of Education, National Academy of Agriculture Green Development, China Agricultural University, Beijing 100193, PR China
| | - Jianbo Shen
- Department of Plant Nutrition, College of Resources and Environmental Sciences, Key Laboratory of Plant-Soil Interactions, Ministry of Education, National Academy of Agriculture Green Development, China Agricultural University, Beijing 100193, PR China
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18
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Cai G, Ahmed MA, Abdalla M, Carminati A. Root hydraulic phenotypes impacting water uptake in drying soils. PLANT, CELL & ENVIRONMENT 2022; 45:650-663. [PMID: 35037263 PMCID: PMC9303794 DOI: 10.1111/pce.14259] [Citation(s) in RCA: 27] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Revised: 12/08/2021] [Accepted: 12/10/2021] [Indexed: 05/11/2023]
Abstract
Soil drying is a limiting factor for crop production worldwide. Yet, it is not clear how soil drying impacts water uptake across different soils, species, and root phenotypes. Here we ask (1) what root phenotypes improve the water use from drying soils? and (2) what root hydraulic properties impact water flow across the soil-plant continuum? The main objective is to propose a hydraulic framework to investigate the interplay between soil and root hydraulic properties on water uptake. We collected highly resolved data on transpiration, leaf and soil water potential across 11 crops and 10 contrasting soil textures. In drying soils, the drop in water potential at the soil-root interface resulted in a rapid decrease in soil hydraulic conductance, especially at higher transpiration rates. The analysis reveals that water uptake was limited by soil within a wide range of soil water potential (-6 to -1000 kPa), depending on both soil textures and root hydraulic phenotypes. We propose that a root phenotype with low root hydraulic conductance, long roots and/or long and dense root hairs postpones soil limitation in drying soils. The consequence of these root phenotypes on crop water use is discussed.
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Affiliation(s)
- Gaochao Cai
- Chair of Soil Physics, Bayreuth Center of Ecology and Environmental Research (BayCEER)University of BayreuthBayreuthGermany
| | - Mutez A. Ahmed
- Chair of Soil Physics, Bayreuth Center of Ecology and Environmental Research (BayCEER)University of BayreuthBayreuthGermany
- Department of Land, Air and Water ResourcesUniversity of California DavisDavisCaliforniaUnited States
| | - Mohanned Abdalla
- Chair of Soil Physics, Bayreuth Center of Ecology and Environmental Research (BayCEER)University of BayreuthBayreuthGermany
| | - Andrea Carminati
- Department of Environmental Systems Science, Physics of Soils and Terrestrial EcosystemsInstitute of Terrestrial Ecosystems, ETH ZürichZurichSwitzerland
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19
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Kohli PS, Maurya K, Thakur JK, Bhosale R, Giri J. Significance of root hairs in developing stress-resilient plants for sustainable crop production. PLANT, CELL & ENVIRONMENT 2022; 45:677-694. [PMID: 34854103 DOI: 10.1111/pce.14237] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 11/15/2021] [Accepted: 11/21/2021] [Indexed: 06/13/2023]
Abstract
Root hairs represent a beneficial agronomic trait to potentially reduce fertilizer and irrigation inputs. Over the past decades, research in the plant model Arabidopsis thaliana has provided insights into root hair development, the underlying genetic framework and the integration of environmental cues within this framework. Recent years have seen a paradigm shift, where studies are now highlighting conservation and diversification of root hair developmental programs in other plant species and the agronomic relevance of root hairs in a wider ecological context. In this review, we specifically discuss the molecular evolution of the RSL (RHD Six-Like) pathway that controls root hair development and growth in land plants. We also discuss how root hairs contribute to plant performance as an active physiological rooting structure by performing resource acquisition, providing anchorage and constructing the rhizosphere with desirable physical, chemical and biological properties. Finally, we outline future research directions that can help achieve the potential of root hairs in developing sustainable agroecosystems.
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Affiliation(s)
| | - Kanika Maurya
- National Institute of Plant Genome Research, New Delhi, India
| | - Jitendra K Thakur
- National Institute of Plant Genome Research, New Delhi, India
- International Centre of Genetic Engineering and Biotechnology, New Delhi, India
| | - Rahul Bhosale
- Future Food Beacon of Excellence and School of Biosciences, University of Nottingham, Nottingham, UK
| | - Jitender Giri
- National Institute of Plant Genome Research, New Delhi, India
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Cai G, Carminati A, Abdalla M, Ahmed MA. Soil textures rather than root hairs dominate water uptake and soil-plant hydraulics under drought. PLANT PHYSIOLOGY 2021; 187:858-872. [PMID: 34608949 PMCID: PMC8491061 DOI: 10.1093/plphys/kiab271] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Accepted: 05/21/2021] [Indexed: 05/11/2023]
Abstract
Although the role of root hairs (RHs) in nutrient uptake is well documented, their role in water uptake and drought tolerance remains controversial. Maize (Zea mays) wild-type and its hair-defective mutant (Mut; roothairless 3) were grown in two contrasting soil textures (sand and loam). We used a root pressure chamber to measure the relation between transpiration rate (E) and leaf xylem water potential (ψleaf_x) during soil drying. Our hypotheses were: (1) RHs extend root-soil contact and reduce the ψleaf_x decline at high E in dry soils; (2) the impact of RHs is more pronounced in sand; and (3) Muts partly compensate for lacking RHs by producing longer and/or thicker roots. The ψleaf_x(E) relation was linear in wet conditions and became nonlinear as the soils dried. This nonlinearity occurred more abruptly and at less negative matric potentials in sand (ca. -10 kPa) than in loam (ca. -100 kPa). At more negative soil matric potentials, soil hydraulic conductance became smaller than root hydraulic conductance in both soils. Both genotypes exhibited 1.7 times longer roots in loam, but 1.6 times thicker roots in sand. No differences were observed in the ψleaf_x(E) relation and active root length between the two genotypes. In maize, RHs had a minor contribution to soil-plant hydraulics in both soils and their putative role in water uptake was smaller than that reported for barley (Hordeum vulgare). These results suggest that the role of RHs cannot be easily generalized across species and soil textures affect the response of root hydraulics to soil drying.
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Affiliation(s)
- Gaochao Cai
- Chair of Soil Physics, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, 95447, Germany
- Biogeochemistry of Agroecosystems, University of Göttingen, Göttingen, 37077, Germany
| | - Andrea Carminati
- Department of Environmental Systems Science, Physics of Soils and Terrestrial Ecosystems, Institute of Terrestrial Ecosystems, ETH Zürich, Zurich, 8092, Switzerland
| | - Mohanned Abdalla
- Chair of Soil Physics, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, 95447, Germany
| | - Mutez Ali Ahmed
- Chair of Soil Physics, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, Bayreuth, 95447, Germany
- Biogeochemistry of Agroecosystems, University of Göttingen, Göttingen, 37077, Germany
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