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Lane JK, Negash Y, Randhawa N, Kebede N, Wells H, Ayalew G, Anthony SJ, Smith B, Goldstein T, Kassa T, Mazet JAK, Consortium P, Smith WA. Coronavirus and Paramyxovirus Shedding by Bats in a Cave and Buildings in Ethiopia. ECOHEALTH 2022; 19:216-232. [PMID: 35771308 PMCID: PMC9243955 DOI: 10.1007/s10393-022-01590-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Accepted: 04/13/2022] [Indexed: 06/15/2023]
Abstract
Bats are important hosts of zoonotic viruses with pandemic potential, including filoviruses, MERS-Coronavirus (CoV), SARS-CoV -1, and likely SARS-CoV-2. Viral infection and transmission among wildlife are dependent on a combination of factors that include host ecology and immunology, life history traits, roosting habitats, biogeography, and external stressors. Between 2016 and 2018, four species of insectivorous bats from a readily accessed roadside cave and buildings in Ethiopia were sampled and tested for viruses using consensus PCR assays for five viral families/genera. Previously identified and novel coronaviruses and paramyxoviruses were identified in 99 of the 589 sampled bats. Bats sampled from the cave site were more likely to test positive for a CoV than bats sampled from buildings; viral shedding was more common in the wet season; and rectal swabs were the most common sample type to test positive. A previously undescribed alphacoronavirus was detected in two bat species from different taxonomic families, sampling interfaces, geographic locations, and years. These findings expand knowledge of the range and diversity of coronaviruses and paramyxoviruses in insectivorous bats in Ethiopia and reinforce that an improved understanding of viral diversity and species-specific shedding dynamics is important for designing informed zoonotic disease surveillance and spillover risk reduction efforts.
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Affiliation(s)
- Jennifer K Lane
- One Health Institute and Karen C. Drayer Wildlife Health Center, School of Veterinary Medicine, University of California, Davis, 1089 Veterinary Medicine Drive, VM3B, Davis, CA, 95616, USA.
| | - Yohannes Negash
- Aklilu Lemma Institute of Pathobiology, Addis Ababa University, P.O. Box 1176, Addis Ababa, Ethiopia
| | - Nistara Randhawa
- One Health Institute and Karen C. Drayer Wildlife Health Center, School of Veterinary Medicine, University of California, Davis, 1089 Veterinary Medicine Drive, VM3B, Davis, CA, 95616, USA
| | - Nigatu Kebede
- Aklilu Lemma Institute of Pathobiology, Addis Ababa University, P.O. Box 1176, Addis Ababa, Ethiopia
| | - Heather Wells
- Department of Ecology, Evolution, and Environmental Biology, Columbia University, New York, NY, 10027, USA
| | - Girma Ayalew
- Ethiopian Wildlife Conservation Authority, Ministry of Environment, Forestry and Climate Change, Addis Ababa, Ethiopia
| | - Simon J Anthony
- School of Veterinary Medicine, University of California, Davis, Davis, CA, 95616, USA
| | - Brett Smith
- Genome Center & Biomedical Engineering, School of Medicine, University of California, Davis, Davis, CA, 95616, USA
| | - Tracey Goldstein
- Zoological Pathology Program, University of Illinois at Urbana-Champaign, Brookfield, IL, 60513, USA
| | - Tesfu Kassa
- Aklilu Lemma Institute of Pathobiology, Addis Ababa University, P.O. Box 1176, Addis Ababa, Ethiopia
| | - Jonna A K Mazet
- One Health Institute and Karen C. Drayer Wildlife Health Center, School of Veterinary Medicine, University of California, Davis, 1089 Veterinary Medicine Drive, VM3B, Davis, CA, 95616, USA
| | | | - Woutrina A Smith
- One Health Institute and Karen C. Drayer Wildlife Health Center, School of Veterinary Medicine, University of California, Davis, 1089 Veterinary Medicine Drive, VM3B, Davis, CA, 95616, USA.
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Pawęska JT, Jansen van Vuren P, Storm N, Markotter W, Kemp A. Vector Competence of Eucampsipoda africana (Diptera: Nycteribiidae) for Marburg Virus Transmission in Rousettus aegyptiacus (Chiroptera: Pteropodidae). Viruses 2021; 13:2226. [PMID: 34835032 PMCID: PMC8624361 DOI: 10.3390/v13112226] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Revised: 10/26/2021] [Accepted: 10/28/2021] [Indexed: 12/04/2022] Open
Abstract
This study aimed to determine the vector competence of bat-associated nycteribiid flies (Eucamsipoda africana) for Marburg virus (MARV) in the Egyptian Rousette Bat (ERB), Rousettus aegyptiacus. In flies fed on subcutaneously infected ERBs and tested from 3 to 43 days post infection (dpi), MARV was detected only in those that took blood during the peak of viremia, 5-7 dpi. Seroconversion did not occur in control bats in contact with MARV-infected bats infested with bat flies up to 43 days post exposure. In flies inoculated intra-coelomically with MARV and tested on days 0-29 post inoculation, only those assayed on day 0 and day 7 after inoculation were positive by q-RT-PCR, but the virus concentration was consistent with that of the inoculum. Bats remained MARV-seronegative up to 38 days after infestation and exposure to inoculated flies. The first filial generation pupae and flies collected at different times during the experiments were all negative by q-RT-PCR. Of 1693 nycteribiid flies collected from a wild ERB colony in Mahune Cave, South Africa where the enzootic transmission of MARV occurs, only one (0.06%) tested positive for the presence of MARV RNA. Our findings seem to demonstrate that bat flies do not play a significant role in the transmission and enzootic maintenance of MARV. However, ERBs eat nycteribiid flies; thus, the mechanical transmission of the virus through the exposure of damaged mucous membranes and/or skin to flies engorged with contaminated blood cannot be ruled out.
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Affiliation(s)
- Janusz T. Pawęska
- Centre for Emerging Zoonotic and Parasitic Diseases, National Institute for Communicable Diseases of the National Health Laboratory Service, Sandringham 2131, South Africa; (P.J.v.V.); (N.S.); (A.K.)
- Centre for Viral Zoonoses, Department of Medical Virology, Faculty of Health Sciences, University of Pretoria, Pretoria 0001, South Africa;
- School of Pathology, Faculty of Health Sciences, University of Witwatersrand, Johannesburg 2050, South Africa
| | - Petrus Jansen van Vuren
- Centre for Emerging Zoonotic and Parasitic Diseases, National Institute for Communicable Diseases of the National Health Laboratory Service, Sandringham 2131, South Africa; (P.J.v.V.); (N.S.); (A.K.)
- Australian Centre for Disease Preparedness, CSIRO Health & Biosecurity, Geelong, VIC 3220, Australia
| | - Nadia Storm
- Centre for Emerging Zoonotic and Parasitic Diseases, National Institute for Communicable Diseases of the National Health Laboratory Service, Sandringham 2131, South Africa; (P.J.v.V.); (N.S.); (A.K.)
- Department of Microbiology, School of Medicine, Boston University, Boston, MA 02118, USA
| | - Wanda Markotter
- Centre for Viral Zoonoses, Department of Medical Virology, Faculty of Health Sciences, University of Pretoria, Pretoria 0001, South Africa;
| | - Alan Kemp
- Centre for Emerging Zoonotic and Parasitic Diseases, National Institute for Communicable Diseases of the National Health Laboratory Service, Sandringham 2131, South Africa; (P.J.v.V.); (N.S.); (A.K.)
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3
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Harima H, Sasaki M, Orba Y, Okuya K, Qiu Y, Wastika CE, Changula K, Kajihara M, Simulundu E, Yamaguchi T, Eto Y, Mori-Kajihara A, Sato A, Taniguchi S, Takada A, Saijo M, Hang’ombe BM, Sawa H. Attenuated infection by a Pteropine orthoreovirus isolated from an Egyptian fruit bat in Zambia. PLoS Negl Trop Dis 2021; 15:e0009768. [PMID: 34492038 PMCID: PMC8448348 DOI: 10.1371/journal.pntd.0009768] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 09/17/2021] [Accepted: 08/27/2021] [Indexed: 11/18/2022] Open
Abstract
Background Pteropine orthoreovirus (PRV) is an emerging bat-borne zoonotic virus that causes severe respiratory illness in humans. Although PRVs have been identified in fruit bats and humans in Australia and Asia, little is known about the prevalence of PRV infection in Africa. Therefore, this study performed an PRV surveillance in fruit bats in Zambia. Methods Egyptian fruit bats (Rousettus aegyptiacus, n = 47) and straw-colored fruit bats (Eidolon helvum, n = 33) captured in Zambia in 2017–2018 were screened for PRV infection using RT-PCR and serum neutralization tests. The complete genome sequence of an isolated PRV strain was determined by next generation sequencing and subjected to BLAST and phylogenetic analyses. Replication capacity and pathogenicity of the strain were investigated using Vero E6 cell cultures and BALB/c mice, respectively. Results An PRV strain, tentatively named Nachunsulwe-57, was isolated from one Egyptian fruit bat. Serological assays demonstrated that 98% of sera (69/70) collected from Egyptian fruit bats (n = 37) and straw-colored fruit bats (n = 33) had neutralizing antibodies against PRV. Genetic analyses revealed that all 10 genome segments of Nachunsulwe-57 were closely related to a bat-derived Kasama strain found in Uganda. Nachunsulwe-57 showed less efficiency in viral growth and lower pathogenicity in mice than another PRV strain, Miyazaki-Bali/2007, isolated from a patient. Conclusions A high proportion of Egyptian fruit bats and straw-colored fruit bats were found to be seropositive to PRV in Zambia. Importantly, a new PRV strain (Nachunsulwe-57) was isolated from an Egyptian fruit bat in Zambia, which had relatively weak pathogenicity in mice. Taken together, our findings provide new epidemiological insights about PRV infection in bats and indicate the first isolation of an PRV strain that may have low pathogenicity to humans. Pteropine orthoreovirus (PRV) is a causative agent of acute respiratory illness in humans in tropical and sub-tropical regions in Southeast Asia. PRVs have been originally isolated from fruit bats, and it is assumed that PRVs spread to humans by both bat-to-human and human-to-human transmission. Recently, an PRV was also detected from a fruit bat in the Afrotropical region and might potentially cause an emerging infection of the bat-borne zoonotic virus in Africa. However, little is known about the prevalence of PRV infection in Africa. In this study, we demonstrated the high prevalence of PRV infection in bat populations in Zambia and isolated a new strain of PRV from Egyptian fruit bats. In addition, we found that the bat-derived PRV strain had lower pathogenicity in mice than a human-derived PRV strain isolated from a patient in Southeast Asia. Our findings provide new epidemiological information about PRV in fruit bats in the Afrotropical region and indicate the first isolation of an PRV strain that may cause attenuated infection in humans.
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Affiliation(s)
- Hayato Harima
- Hokudai Center for Zoonosis Control in Zambia, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
| | - Michihito Sasaki
- Division of Molecular Pathobiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
| | - Yasuko Orba
- Division of Molecular Pathobiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
- International Collaboration Unit, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
| | - Kosuke Okuya
- Division of Global Epidemiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
| | - Yongjin Qiu
- Hokudai Center for Zoonosis Control in Zambia, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
| | - Christida E. Wastika
- Division of Molecular Pathobiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
| | - Katendi Changula
- Department of Para-clinical Studies, School of Veterinary Medicine, the University of Zambia, Lusaka, Zambia
| | - Masahiro Kajihara
- Division of Global Epidemiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
| | - Edgar Simulundu
- Department of Disease Control, School of Veterinary Medicine, the University of Zambia, Lusaka, Zambia
- Macha Research Trust, Choma, Zambia
| | - Tomoyuki Yamaguchi
- Division of Bioresources, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
| | - Yoshiki Eto
- Division of Global Epidemiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
| | - Akina Mori-Kajihara
- Division of Global Epidemiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
| | - Akihiko Sato
- Division of Molecular Pathobiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
- Drug Discovery & Disease Research Laboratory, Shionogi & Co., Ltd., Osaka, Japan
| | - Satoshi Taniguchi
- Department of Virology I, National Institute of Infectious Diseases, Shinjuku, Tokyo, Japan
| | - Ayato Takada
- International Collaboration Unit, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
- Division of Global Epidemiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
- Department of Disease Control, School of Veterinary Medicine, the University of Zambia, Lusaka, Zambia
- Africa Center of Excellence for Infectious Diseases of Humans and Animals, the University of Zambia, Lusaka, Zambia
| | - Masayuki Saijo
- Department of Virology I, National Institute of Infectious Diseases, Shinjuku, Tokyo, Japan
| | - Bernard M. Hang’ombe
- Department of Para-clinical Studies, School of Veterinary Medicine, the University of Zambia, Lusaka, Zambia
- Africa Center of Excellence for Infectious Diseases of Humans and Animals, the University of Zambia, Lusaka, Zambia
| | - Hirofumi Sawa
- Division of Molecular Pathobiology, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
- International Collaboration Unit, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan
- Department of Disease Control, School of Veterinary Medicine, the University of Zambia, Lusaka, Zambia
- Africa Center of Excellence for Infectious Diseases of Humans and Animals, the University of Zambia, Lusaka, Zambia
- Global Virus Network, Baltimore, Maryland, United States of America
- One Health Research Center, Hokkaido University, Sapporo, Japan
- * E-mail:
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Changula K, Simulundu E, Lombe BP, Nakayama E, Miyamoto H, Takahashi Y, Sawa H, Simukonda C, Hang’ombe BM, Takada A. Serological Evidence of Filovirus Infection in Nonhuman Primates in Zambia. Viruses 2021; 13:v13071283. [PMID: 34209295 PMCID: PMC8309988 DOI: 10.3390/v13071283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2021] [Revised: 06/23/2021] [Accepted: 06/25/2021] [Indexed: 12/01/2022] Open
Abstract
Ebolaviruses and marburgviruses are filoviruses that are known to cause severe hemorrhagic fever in humans and nonhuman primates (NHPs). While some bat species are suspected to be natural reservoirs of these filoviruses, wild NHPs often act as intermediate hosts for viral transmission to humans. Using an enzyme-linked immunosorbent assay, we screened two NHP species, wild baboons and vervet monkeys captured in Zambia, for their serum IgG antibodies specific to the envelope glycoproteins of filoviruses. From 243 samples tested, 39 NHPs (16%) were found to be seropositive either for ebolaviruses or marburgviruses with endpoint antibody titers ranging from 100 to 25,600. Interestingly, antibodies reactive to Reston virus, which is found only in Asia, were detected in both NHP species. There was a significant difference in the seropositivity for the marburgvirus antigen between the two NHP species, with baboons having a higher positive rate. These results suggest that wild NHPs in Zambia might be nonlethally exposed to these filoviruses, and this emphasizes the need for continuous monitoring of filovirus infection in wild animals to better understand the ecology of filoviruses and to assess potential risks of outbreaks in humans in previously nonendemic countries.
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Affiliation(s)
- Katendi Changula
- Department of Paraclinical Studies, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; (K.C.); (B.M.H.)
| | - Edgar Simulundu
- Department of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; (E.S.); (H.S.)
- Macha Research Trust, P.O. Box 630166, Choma 20100, Zambia
| | - Boniface Pongombo Lombe
- Division of Global Epidemiology, International Institute for Zoonosis Control, Hokkaido University, Sapporo 001-0020, Japan; (B.P.L.); (H.M.); (Y.T.)
- Central Veterinary Laboratory of Kinshasa, Kinshasa BP 8842, Democratic Republic of the Congo
- Faculty of Veterinary Medicine, National Pedagogic University, Kinshasa BP 8815, Democratic Republic of the Congo
| | - Eri Nakayama
- Department of Virology I, National Institute of Infectious Diseases, Tokyo 162-0052, Japan;
| | - Hiroko Miyamoto
- Division of Global Epidemiology, International Institute for Zoonosis Control, Hokkaido University, Sapporo 001-0020, Japan; (B.P.L.); (H.M.); (Y.T.)
| | - Yuji Takahashi
- Division of Global Epidemiology, International Institute for Zoonosis Control, Hokkaido University, Sapporo 001-0020, Japan; (B.P.L.); (H.M.); (Y.T.)
| | - Hirofumi Sawa
- Department of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; (E.S.); (H.S.)
- Division of Molecular Pathobiology, International Institute for Zoonosis Control, Hokkaido University, Sapporo 001-0020, Japan
- International Collaboration Unit, International Institute for Zoonosis Control, Hokkaido University, Sapporo 001-0020, Japan
| | - Chuma Simukonda
- Department of National Parks and Wildlife, Chilanga 10101, Zambia;
| | - Bernard M. Hang’ombe
- Department of Paraclinical Studies, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; (K.C.); (B.M.H.)
| | - Ayato Takada
- Department of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka 10101, Zambia; (E.S.); (H.S.)
- Division of Global Epidemiology, International Institute for Zoonosis Control, Hokkaido University, Sapporo 001-0020, Japan; (B.P.L.); (H.M.); (Y.T.)
- International Collaboration Unit, International Institute for Zoonosis Control, Hokkaido University, Sapporo 001-0020, Japan
- Correspondence: ; Tel.: +81-11-706-9502
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Cross RW, Bornholdt ZA, Prasad AN, Borisevich V, Agans KN, Deer DJ, Abelson DM, Kim DH, Shestowsky WS, Campbell LA, Bunyan E, Geisbert JB, Fenton KA, Zeitlin L, Porter DP, Geisbert TW. Combination therapy protects macaques against advanced Marburg virus disease. Nat Commun 2021; 12:1891. [PMID: 33767178 PMCID: PMC7994808 DOI: 10.1038/s41467-021-22132-0] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Accepted: 03/03/2021] [Indexed: 11/08/2022] Open
Abstract
Monoclonal antibodies (mAbs) and remdesivir, a small-molecule antiviral, are promising monotherapies for many viruses, including members of the genera Marburgvirus and Ebolavirus (family Filoviridae), and more recently, SARS-CoV-2. One of the major challenges of acute viral infections is the treatment of advanced disease. Thus, extending the window of therapeutic intervention is critical. Here, we explore the benefit of combination therapy with a mAb and remdesivir in a non-human primate model of Marburg virus (MARV) disease. While rhesus monkeys are protected against lethal infection when treatment with either a human mAb (MR186-YTE; 100%), or remdesivir (80%), is initiated 5 days post-inoculation (dpi) with MARV, no animals survive when either treatment is initiated alone beginning 6 dpi. However, by combining MR186-YTE with remdesivir beginning 6 dpi, significant protection (80%) is achieved, thereby extending the therapeutic window. These results suggest value in exploring combination therapy in patients presenting with advanced filovirus disease.
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Affiliation(s)
- Robert W Cross
- Galveston National Laboratory, University of Texas Medical Branch, 301 University Blvd, Galveston, TX, USA
- Department of Microbiology and Immunology, University of Texas Medical Branch, 301 University Blvd, Galveston, TX, USA
| | | | - Abhishek N Prasad
- Galveston National Laboratory, University of Texas Medical Branch, 301 University Blvd, Galveston, TX, USA
- Department of Microbiology and Immunology, University of Texas Medical Branch, 301 University Blvd, Galveston, TX, USA
| | - Viktoriya Borisevich
- Galveston National Laboratory, University of Texas Medical Branch, 301 University Blvd, Galveston, TX, USA
- Department of Microbiology and Immunology, University of Texas Medical Branch, 301 University Blvd, Galveston, TX, USA
| | - Krystle N Agans
- Galveston National Laboratory, University of Texas Medical Branch, 301 University Blvd, Galveston, TX, USA
- Department of Microbiology and Immunology, University of Texas Medical Branch, 301 University Blvd, Galveston, TX, USA
| | - Daniel J Deer
- Galveston National Laboratory, University of Texas Medical Branch, 301 University Blvd, Galveston, TX, USA
- Department of Microbiology and Immunology, University of Texas Medical Branch, 301 University Blvd, Galveston, TX, USA
| | - Dafna M Abelson
- Mapp Biopharmaceutical, Inc., 6160 Lusk Blvd Ste C200, San Diego, CA, USA
| | - Do H Kim
- Mapp Biopharmaceutical, Inc., 6160 Lusk Blvd Ste C200, San Diego, CA, USA
| | | | | | - Elaine Bunyan
- Gilead Sciences, Inc., 333 Lakeside Dr, Foster City, CA, USA
| | - Joan B Geisbert
- Galveston National Laboratory, University of Texas Medical Branch, 301 University Blvd, Galveston, TX, USA
- Department of Microbiology and Immunology, University of Texas Medical Branch, 301 University Blvd, Galveston, TX, USA
| | - Karla A Fenton
- Galveston National Laboratory, University of Texas Medical Branch, 301 University Blvd, Galveston, TX, USA
- Department of Microbiology and Immunology, University of Texas Medical Branch, 301 University Blvd, Galveston, TX, USA
| | - Larry Zeitlin
- Mapp Biopharmaceutical, Inc., 6160 Lusk Blvd Ste C200, San Diego, CA, USA.
| | | | - Thomas W Geisbert
- Galveston National Laboratory, University of Texas Medical Branch, 301 University Blvd, Galveston, TX, USA.
- Department of Microbiology and Immunology, University of Texas Medical Branch, 301 University Blvd, Galveston, TX, USA.
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Simulundu E, Mupeta F, Chanda-Kapata P, Saasa N, Changula K, Muleya W, Chitanga S, Mwanza M, Simusika P, Chambaro H, Mubemba B, Kajihara M, Chanda D, Mulenga L, Fwoloshi S, Shibemba AL, Kapaya F, Zulu P, Musonda K, Monze M, Sinyange N, Mazaba ML, Kapin'a M, Chipimo PJ, Hamoonga R, Simwaba D, Ngosa W, Morales AN, Kayeyi N, Tembo J, Bates M, Orba Y, Sawa H, Takada A, Nalubamba KS, Malama K, Mukonka V, Zumla A, Kapata N. First COVID-19 case in Zambia - Comparative phylogenomic analyses of SARS-CoV-2 detected in African countries. Int J Infect Dis 2020; 102:455-459. [PMID: 33035675 PMCID: PMC7537667 DOI: 10.1016/j.ijid.2020.09.1480] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Revised: 09/29/2020] [Accepted: 09/30/2020] [Indexed: 11/19/2022] Open
Abstract
Since its first discovery in December 2019 in Wuhan, China, COVID-19, caused by the novel coronavirus SARS-CoV-2, has spread rapidly worldwide. While African countries were relatively spared initially, the initial low incidence of COVID-19 cases was not sustained for long due to continuing travel links between China, Europe and Africa. In preparation, Zambia had applied a multisectoral national epidemic disease surveillance and response system resulting in the identification of the first case within 48 h of the individual entering the country by air travel from a trip to France. Contact tracing showed that SARS-CoV-2 infection was contained within the patient’s household, with no further spread to attending health care workers or community members. Phylogenomic analysis of the patient’s SARS-CoV-2 strain showed that it belonged to lineage B.1.1., sharing the last common ancestor with SARS-CoV-2 strains recovered from South Africa. At the African continental level, our analysis showed that B.1 and B.1.1 lineages appear to be predominant in Africa. Whole genome sequence analysis should be part of all surveillance and case detection activities in order to monitor the origin and evolution of SARS-CoV-2 lineages across Africa.
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Affiliation(s)
- Edgar Simulundu
- Macha Research Trust, Choma, Zambia; University of Zambia, School of Veterinary Medicine, Lusaka, Zambia.
| | | | | | - Ngonda Saasa
- University of Zambia, School of Veterinary Medicine, Lusaka, Zambia.
| | - Katendi Changula
- University of Zambia, School of Veterinary Medicine, Lusaka, Zambia.
| | - Walter Muleya
- University of Zambia, School of Veterinary Medicine, Lusaka, Zambia.
| | - Simbarashe Chitanga
- University of Zambia, School of Health Sciences, Lusaka, Zambia; Hokkaido University, Research Centre for Zoonosis Control, Sapporo, Japan.
| | | | | | - Herman Chambaro
- Hokkaido University, Research Centre for Zoonosis Control, Sapporo, Japan.
| | - Benjamin Mubemba
- Copperbelt University, School of Natural Resources, Kitwe, Zambia.
| | - Masahiro Kajihara
- Hokkaido University, Research Centre for Zoonosis Control, Sapporo, Japan.
| | | | | | | | | | - Fred Kapaya
- Zambia National Public Health Institute, Ministry of Health, Lusaka, Zambia.
| | - Paul Zulu
- Zambia National Public Health Institute, Ministry of Health, Lusaka, Zambia.
| | - Kunda Musonda
- Zambia National Public Health Institute, Ministry of Health, Lusaka, Zambia.
| | | | - Nyambe Sinyange
- Zambia National Public Health Institute, Ministry of Health, Lusaka, Zambia.
| | - Mazyanga L Mazaba
- Zambia National Public Health Institute, Ministry of Health, Lusaka, Zambia.
| | - Muzala Kapin'a
- Zambia National Public Health Institute, Ministry of Health, Lusaka, Zambia.
| | - Peter J Chipimo
- Zambia National Public Health Institute, Ministry of Health, Lusaka, Zambia.
| | - Raymond Hamoonga
- Zambia National Public Health Institute, Ministry of Health, Lusaka, Zambia.
| | - Davie Simwaba
- Zambia National Public Health Institute, Ministry of Health, Lusaka, Zambia.
| | - William Ngosa
- Zambia National Public Health Institute, Ministry of Health, Lusaka, Zambia.
| | - Albertina N Morales
- Zambia National Public Health Institute, Ministry of Health, Lusaka, Zambia.
| | - Nkomba Kayeyi
- Zambia National Public Health Institute, Ministry of Health, Lusaka, Zambia.
| | - John Tembo
- HerpeZ and UNZA-UCLMS Project, University Teaching Hospital, Lusaka, Zambia.
| | - Mathew Bates
- HerpeZ and UNZA-UCLMS Project, University Teaching Hospital, Lusaka, Zambia.
| | - Yasuko Orba
- Hokkaido University, Research Centre for Zoonosis Control, Sapporo, Japan.
| | - Hirofumi Sawa
- University of Zambia, School of Veterinary Medicine, Lusaka, Zambia.
| | - Ayato Takada
- University of Zambia, School of Veterinary Medicine, Lusaka, Zambia.
| | - King S Nalubamba
- University of Zambia, School of Veterinary Medicine, Lusaka, Zambia.
| | | | - Victor Mukonka
- Division of Infection and Immunity, CCM, University College London, London, United Kingdom.
| | - Alimuddin Zumla
- Division of Infection and Immunity, CCM, University College London, London, United Kingdom; University College London Hospitals NHS Foundation Trust NIHR Biomedical Research Centre, London, United Kingdom.
| | - Nathan Kapata
- Zambia National Public Health Institute, Ministry of Health, Lusaka, Zambia.
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7
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Qiu Y, Kajihara M, Nakao R, Mulenga E, Harima H, Hang’ombe BM, Eto Y, Changula K, Mwizabi D, Sawa H, Higashi H, Mweene A, Takada A, Simuunza M, Sugimoto C. Isolation of Candidatus Bartonella rousetti and Other Bat-associated Bartonellae from Bats and Their Flies in Zambia. Pathogens 2020; 9:pathogens9060469. [PMID: 32545824 PMCID: PMC7350321 DOI: 10.3390/pathogens9060469] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Revised: 06/09/2020] [Accepted: 06/12/2020] [Indexed: 12/12/2022] Open
Abstract
Bat-associated bartonellae, including Bartonella mayotimonensis and Candidatus Bartonella rousetti, were recently identified as emerging and potential zoonotic agents, respectively. However, there is no report of bat-associated bartonellae in Zambia. Thus, we aimed to isolate and characterize Bartonella spp. from bats and bat flies captured in Zambia by culturing and PCR. Overall, Bartonella spp. were isolated from six out of 36 bats (16.7%), while Bartonella DNA was detected in nine out of 19 bat flies (47.3%). Subsequent characterization using a sequence of five different genes revealed that three isolates obtained from Egyptian fruit bats (Rousettus aegyptiacus) were Ca. B. rousetti. The isolates obtained from insectivorous bats (Macronycteris vittatus) were divided into two previously unclassified bat-associated bartonellae. A phylogenetic analysis of the six genotypes of Bartonella gltA sequences from nine pathogen-positive bat flies revealed that three genotypes belonged to the same clades as bat-associated bartonellae, including Ca. B. rousetti. The other three genotypes represented arthropod-associated bartonellae, which have previously been isolated only from ectoparasites. We demonstrated that Ca. B. rousetti is maintained between bats (R. aegyptiacus) and bat flies in Zambia. Continuous surveillance of Bartonella spp. in bats and serological surveys in humans in Africa are warranted to evaluate the public health importance of bat-associated bartonellae.
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Affiliation(s)
- Yongjin Qiu
- Hokudai Center for Zoonosis Control in Zambia, Hokkaido University Research Center for Zoonosis Control, Sapporo 001-0020, Japan; (Y.Q.); (M.K.); (H.H.); (H.H.)
| | - Masahiro Kajihara
- Hokudai Center for Zoonosis Control in Zambia, Hokkaido University Research Center for Zoonosis Control, Sapporo 001-0020, Japan; (Y.Q.); (M.K.); (H.H.); (H.H.)
- Division of Global Epidemiology, Hokkaido University Research Center for Zoonosis Control, Sapporo 001-0020, Japan; (Y.E.); (A.T.)
| | - Ryo Nakao
- Laboratory of Parasitology, Graduate School of Infectious Diseases, Faculty of Veterinary Medicine, Hokkaido University, Sapporo 060-0818, Japan;
| | - Evans Mulenga
- Department of Para-Clinical Studies, School of Veterinary Medicine, the University of Zambia, Lusaka 10101, Zambia; (E.M.); (B.M.H.); (K.C.)
| | - Hayato Harima
- Hokudai Center for Zoonosis Control in Zambia, Hokkaido University Research Center for Zoonosis Control, Sapporo 001-0020, Japan; (Y.Q.); (M.K.); (H.H.); (H.H.)
| | - Bernard Mudenda Hang’ombe
- Department of Para-Clinical Studies, School of Veterinary Medicine, the University of Zambia, Lusaka 10101, Zambia; (E.M.); (B.M.H.); (K.C.)
- Global Virus Network Affiliate Center of Excellence, the University of Zambia, Lusaka 10101, Zambia;
- African Center of Excellence for Infectious Diseases of Humans and Animals, the University of Zambia, Lusaka 10101, Zambia
| | - Yoshiki Eto
- Division of Global Epidemiology, Hokkaido University Research Center for Zoonosis Control, Sapporo 001-0020, Japan; (Y.E.); (A.T.)
| | - Katendi Changula
- Department of Para-Clinical Studies, School of Veterinary Medicine, the University of Zambia, Lusaka 10101, Zambia; (E.M.); (B.M.H.); (K.C.)
| | - Daniel Mwizabi
- Department of National Parks and Wildlife, Ministry of Tourism and Arts of Zambia, Lusaka 10101, Zambia;
| | - Hirofumi Sawa
- Division of Molecular Pathobiology, Hokkaido University Research Center for Zoonosis Control, Sapporo 001-0020, Japan;
- Department of Disease Control, School of Veterinary Medicine, the University of Zambia, Lusaka 10101, Zambia;
- Global Institution for Collaborative Research and Education (GI-CoRE), Hokkaido University, Sapporo 001-0020, Japan
- Global Virus Network, Baltimore, MD 21201, USA
| | - Hideaki Higashi
- Hokudai Center for Zoonosis Control in Zambia, Hokkaido University Research Center for Zoonosis Control, Sapporo 001-0020, Japan; (Y.Q.); (M.K.); (H.H.); (H.H.)
- Department of Disease Control, School of Veterinary Medicine, the University of Zambia, Lusaka 10101, Zambia;
- Global Institution for Collaborative Research and Education (GI-CoRE), Hokkaido University, Sapporo 001-0020, Japan
- Division of Infection and Immunity, Hokkaido University Research Center for Zoonosis Control, Sapporo 001-0020, Japan
| | - Aaron Mweene
- Global Virus Network Affiliate Center of Excellence, the University of Zambia, Lusaka 10101, Zambia;
- African Center of Excellence for Infectious Diseases of Humans and Animals, the University of Zambia, Lusaka 10101, Zambia
- Department of Disease Control, School of Veterinary Medicine, the University of Zambia, Lusaka 10101, Zambia;
| | - Ayato Takada
- Division of Global Epidemiology, Hokkaido University Research Center for Zoonosis Control, Sapporo 001-0020, Japan; (Y.E.); (A.T.)
- Department of Disease Control, School of Veterinary Medicine, the University of Zambia, Lusaka 10101, Zambia;
- Global Institution for Collaborative Research and Education (GI-CoRE), Hokkaido University, Sapporo 001-0020, Japan
| | - Martin Simuunza
- Department of Disease Control, School of Veterinary Medicine, the University of Zambia, Lusaka 10101, Zambia;
| | - Chihiro Sugimoto
- Department of Disease Control, School of Veterinary Medicine, the University of Zambia, Lusaka 10101, Zambia;
- Global Institution for Collaborative Research and Education (GI-CoRE), Hokkaido University, Sapporo 001-0020, Japan
- Division of Collaboration and Education, Hokkaido University Research Center for Zoonosis Control, Sapporo 001-0020, Japan
- Correspondence: ; Tel.: +81-11-706-5297
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8
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Seroreactive Profiling of Filoviruses in Chinese Bats Reveals Extensive Infection of Diverse Viruses. J Virol 2020; 94:JVI.02042-19. [PMID: 31941778 DOI: 10.1128/jvi.02042-19] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Accepted: 01/02/2020] [Indexed: 01/28/2023] Open
Abstract
Southern China is a hot spot of emerging infectious diseases, in which diverse species of bats dwell, a large group of flying mammals considered natural reservoirs for zoonotic viruses. Recently, divergent filoviruses (FiVs) have been identified in bats within this region, which pose a potential risk to public health, but the true infection situation in bats remains largely unclear. Here, 689 archived bat serum samples were analyzed by enzyme-linked immunosorbent assay (ELISA), Western blotting, and neutralization assay to investigate the seroprevalence and cross-reactivity of four divergent FiVs and two other viruses (rabies virus and Tuhoko pararubulavirus 1) of different families within the order Mononegavirales Results showed no cross-antigenicity between FiVs and other mononegaviruses but different cross-reactivity among the FiVs themselves. The total FiV seroreactive rate was 36.3% (250/689), with infection by the indigenous Chinese FiV DH04 or an antigenically related one being the most widely and the most highly prevalent. Further viral metagenomic analysis of fruit bat tissues also identified the gene sequence of a novel FiV. These results indicate the likely prevalence of other so far unidentified FiVs within the Chinese bat population, with frugivorous Rousettus leschenaultii and Eonycteris spelaea bats and insectivorous Myotis horsfieldii and Miniopterus schreibersii bats being their major reservoirs.IMPORTANCE Bats are natural hosts of many FiVs, from which diverse FiVs were serologically or virologically detected in Africa, Europe, and East Asia. Recently, very divergent FiVs were identified in the Chinese bat population, but their antigenic relationship with other known FiVs remains unknown. Here, we conducted serological characterization and investigation of Chinese indigenous FiVs and prototypes of other viruses in bats. Results indicated that Chinese indigenous FiVs are antigenically distant to other FiVs, and infection of novel or multiple FiVs occurred in Chinese bats, with FiV DH04 or an antigenically related one being the most widely and the most highly prevalent. Additionally, besides Rousettus leschenaultii and Eonycteris spelaea bats, the insectivorous Myotis horsfieldii and M. schreibersii bats are highly preferential hosts of FiVs. Seroreactive and viral metagenomic results indicated that more as yet unknown bat-borne FiVs circulate in Southern China, and to uncover them further, investigation and timely surveillance is needed.
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9
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David D, Davidson I, Berkowitz A, Karniely S, Edery N, Bumbarov V, Laskar O, Elazari-Volcani R. A novel poxvirus isolated from an Egyptian fruit bat in Israel. Vet Med Sci 2020; 6:587-590. [PMID: 32100464 PMCID: PMC7397903 DOI: 10.1002/vms3.233] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
An Egyptian fruit bat (Rousettus aegyptiacus) from the Zoological Gardens, at Tel Aviv, Israel, showed pox‐like clinical signs including vesicular and nodular skin lesions on the wings. Cell culture isolation, histopathology, electron microscopy and molecular analysis, revealed the presence of a novel bat poxvirus. Future research is needed to determine whether this virus can affect human health.
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Affiliation(s)
- Dan David
- Kimron Veterinary Institute, Bet Dagan, Israel
| | | | | | | | - Nir Edery
- Kimron Veterinary Institute, Bet Dagan, Israel
| | | | - Orly Laskar
- Department of Infectious Diseases, IIBR, Ness Ziona, Israel
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10
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Amman BR, Bird BH, Bakarr IA, Bangura J, Schuh AJ, Johnny J, Sealy TK, Conteh I, Koroma AH, Foday I, Amara E, Bangura AA, Gbakima AA, Tremeau-Bravard A, Belaganahalli M, Dhanota J, Chow A, Ontiveros V, Gibson A, Turay J, Patel K, Graziano J, Bangura C, Kamanda ES, Osborne A, Saidu E, Musa J, Bangura D, Williams SMT, Wadsworth R, Turay M, Edwin L, Mereweather-Thompson V, Kargbo D, Bairoh FV, Kanu M, Robert W, Lungai V, Guetiya Wadoum RE, Coomber M, Kanu O, Jambai A, Kamara SM, Taboy CH, Singh T, Mazet JAK, Nichol ST, Goldstein T, Towner JS, Lebbie A. Isolation of Angola-like Marburg virus from Egyptian rousette bats from West Africa. Nat Commun 2020; 11:510. [PMID: 31980636 PMCID: PMC6981187 DOI: 10.1038/s41467-020-14327-8] [Citation(s) in RCA: 54] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2019] [Accepted: 12/19/2019] [Indexed: 11/22/2022] Open
Abstract
Marburg virus (MARV) causes sporadic outbreaks of severe Marburg virus disease (MVD). Most MVD outbreaks originated in East Africa and field studies in East Africa, South Africa, Zambia, and Gabon identified the Egyptian rousette bat (ERB; Rousettus aegyptiacus) as a natural reservoir. However, the largest recorded MVD outbreak with the highest case-fatality ratio happened in 2005 in Angola, where direct spillover from bats was not shown. Here, collaborative studies by the Centers for Disease Control and Prevention, Njala University, University of California, Davis USAID-PREDICT, and the University of Makeni identify MARV circulating in ERBs in Sierra Leone. PCR, antibody and virus isolation data from 1755 bats of 42 species shows active MARV infection in approximately 2.5% of ERBs. Phylogenetic analysis identifies MARVs that are similar to the Angola strain. These results provide evidence of MARV circulation in West Africa and demonstrate the value of pathogen surveillance to identify previously undetected threats.
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Affiliation(s)
- Brian R Amman
- Viral Special Pathogens Branch, Centers for Disease Control and Prevention, 1600 Clifton Rd. NE, Atlanta, GA, 30329, USA
| | - Brian H Bird
- One Health Institute, School of Veterinary Medicine, University of California, 1089 Veterinary Medicine Drive VetMed 3B, Ground Floor West, Davis, CA, 95616, USA
| | - Ibrahim A Bakarr
- Department of Biological Sciences, Njala University, Njala, Sierra Leone
| | - James Bangura
- One Health Institute, School of Veterinary Medicine, University of California, 1089 Veterinary Medicine Drive VetMed 3B, Ground Floor West, Davis, CA, 95616, USA
- University of Makeni, Makeni, Sierra Leone
| | - Amy J Schuh
- Viral Special Pathogens Branch, Centers for Disease Control and Prevention, 1600 Clifton Rd. NE, Atlanta, GA, 30329, USA
| | - Jonathan Johnny
- Department of Biological Sciences, Njala University, Njala, Sierra Leone
| | - Tara K Sealy
- Viral Special Pathogens Branch, Centers for Disease Control and Prevention, 1600 Clifton Rd. NE, Atlanta, GA, 30329, USA
| | - Immah Conteh
- Department of Biological Sciences, Njala University, Njala, Sierra Leone
| | - Alusine H Koroma
- Department of Biological Sciences, Njala University, Njala, Sierra Leone
| | - Ibrahim Foday
- Department of Biological Sciences, Njala University, Njala, Sierra Leone
| | | | | | - Aiah A Gbakima
- Ministry of Technical and Higher Education, New England Ville, Freetown, Sierra Leone
| | | | | | - Jasjeet Dhanota
- One Health Institute, School of Veterinary Medicine, University of California, 1089 Veterinary Medicine Drive VetMed 3B, Ground Floor West, Davis, CA, 95616, USA
| | - Andrew Chow
- One Health Institute, School of Veterinary Medicine, University of California, 1089 Veterinary Medicine Drive VetMed 3B, Ground Floor West, Davis, CA, 95616, USA
| | - Victoria Ontiveros
- One Health Institute, School of Veterinary Medicine, University of California, 1089 Veterinary Medicine Drive VetMed 3B, Ground Floor West, Davis, CA, 95616, USA
| | - Alexandra Gibson
- One Health Institute, School of Veterinary Medicine, University of California, 1089 Veterinary Medicine Drive VetMed 3B, Ground Floor West, Davis, CA, 95616, USA
| | | | - Ketan Patel
- Viral Special Pathogens Branch, Centers for Disease Control and Prevention, 1600 Clifton Rd. NE, Atlanta, GA, 30329, USA
| | - James Graziano
- Viral Special Pathogens Branch, Centers for Disease Control and Prevention, 1600 Clifton Rd. NE, Atlanta, GA, 30329, USA
| | - Camilla Bangura
- Department of Biological Sciences, Njala University, Njala, Sierra Leone
| | - Emmanuel S Kamanda
- Department of Biological Sciences, Njala University, Njala, Sierra Leone
| | - Augustus Osborne
- Department of Biological Sciences, Njala University, Njala, Sierra Leone
| | - Emmanuel Saidu
- Department of Biological Sciences, Njala University, Njala, Sierra Leone
| | - Jonathan Musa
- Department of Biological Sciences, Njala University, Njala, Sierra Leone
| | - Doris Bangura
- Department of Biological Sciences, Njala University, Njala, Sierra Leone
| | | | - Richard Wadsworth
- Department of Biological Sciences, Njala University, Njala, Sierra Leone
| | | | | | | | | | | | | | | | | | | | | | - Osman Kanu
- University of Makeni, Makeni, Sierra Leone
| | - Amara Jambai
- Ministry of Health and Sanitation, Brookfields, Freetown, Sierra Leone
| | - Sorie M Kamara
- Ministry of Agriculture and Forestry, Brookfields, Freetown, Sierra Leone
| | - Celine H Taboy
- Viral Special Pathogens Branch, Centers for Disease Control and Prevention, 1600 Clifton Rd. NE, Atlanta, GA, 30329, USA
| | - Tushar Singh
- Center for Global Health, Centers for Disease Control and Prevention, Freetown, Sierra Leone
| | - Jonna A K Mazet
- One Health Institute, School of Veterinary Medicine, University of California, 1089 Veterinary Medicine Drive VetMed 3B, Ground Floor West, Davis, CA, 95616, USA
| | - Stuart T Nichol
- Viral Special Pathogens Branch, Centers for Disease Control and Prevention, 1600 Clifton Rd. NE, Atlanta, GA, 30329, USA
| | - Tracey Goldstein
- One Health Institute, School of Veterinary Medicine, University of California, 1089 Veterinary Medicine Drive VetMed 3B, Ground Floor West, Davis, CA, 95616, USA.
| | - Jonathan S Towner
- Viral Special Pathogens Branch, Centers for Disease Control and Prevention, 1600 Clifton Rd. NE, Atlanta, GA, 30329, USA.
| | - Aiah Lebbie
- Department of Biological Sciences, Njala University, Njala, Sierra Leone.
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11
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Becker DJ, Crowley DE, Washburne AD, Plowright RK. Temporal and spatial limitations in global surveillance for bat filoviruses and henipaviruses. Biol Lett 2019; 15:20190423. [PMID: 31822244 PMCID: PMC6936026 DOI: 10.1098/rsbl.2019.0423] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2019] [Accepted: 11/18/2019] [Indexed: 12/23/2022] Open
Abstract
Sampling reservoir hosts over time and space is critical to detect epizootics, predict spillover and design interventions. However, because sampling is logistically difficult and expensive, researchers rarely perform spatio-temporal sampling of many reservoir hosts. Bats are reservoirs of many virulent zoonotic pathogens such as filoviruses and henipaviruses, yet the highly mobile nature of these animals has limited optimal sampling of bat populations. To quantify the frequency of temporal sampling and to characterize the geographical scope of bat virus research, we here collated data on filovirus and henipavirus prevalence and seroprevalence in wild bats. We used a phylogenetically controlled meta-analysis to next assess temporal and spatial variation in bat virus detection estimates. Our analysis shows that only one in four bat virus studies report data longitudinally, that sampling efforts cluster geographically (e.g. filovirus data are available across much of Africa and Asia but are absent from Latin America and Oceania), and that sampling designs and reporting practices may affect some viral detection estimates (e.g. filovirus seroprevalence). Within the limited number of longitudinal bat virus studies, we observed high heterogeneity in viral detection estimates that in turn reflected both spatial and temporal variation. This suggests that spatio-temporal sampling designs are important to understand how zoonotic viruses are maintained and spread within and across wild bat populations, which in turn could help predict and preempt risks of zoonotic viral spillover.
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Affiliation(s)
- Daniel J. Becker
- Department of Microbiology and Immunology, Montana State University, Bozeman, MT, USA
- Department of Biology, Indiana University, Bloomington, IN, USA
- Center for the Ecology of Infectious Diseases, University of Georgia, Athens, GA, USA
| | - Daniel E. Crowley
- Department of Microbiology and Immunology, Montana State University, Bozeman, MT, USA
| | - Alex D. Washburne
- Department of Microbiology and Immunology, Montana State University, Bozeman, MT, USA
| | - Raina K. Plowright
- Department of Microbiology and Immunology, Montana State University, Bozeman, MT, USA
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12
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Kajihara M, Hang'ombe BM, Changula K, Harima H, Isono M, Okuya K, Yoshida R, Mori-Kajihara A, Eto Y, Orba Y, Ogawa H, Qiu Y, Sawa H, Simulundu E, Mwizabi D, Munyeme M, Squarre D, Mukonka V, Mweene A, Takada A. Marburgvirus in Egyptian Fruit Bats, Zambia. Emerg Infect Dis 2019; 25:1577-1580. [PMID: 31146800 PMCID: PMC6649326 DOI: 10.3201/eid2508.190268] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
Abstract
We detected Marburg virus genome in Egyptian fruit bats (Rousettus aegyptiacus) captured in Zambia in September 2018. The virus was closely related phylogenetically to the viruses that previously caused Marburg outbreaks in the Democratic Republic of the Congo. This finding demonstrates that Zambia is at risk for Marburg virus disease.
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13
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Abstract
Marburgviruses are closely related to ebolaviruses and cause a devastating disease in humans. In 2012, we published a comprehensive review of the first 45 years of research on marburgviruses and the disease they cause, ranging from molecular biology to ecology. Spurred in part by the deadly Ebola virus outbreak in West Africa in 2013-2016, research on all filoviruses has intensified. Not meant as an introduction to marburgviruses, this article instead provides a synopsis of recent progress in marburgvirus research with a particular focus on molecular biology, advances in animal modeling, and the use of Egyptian fruit bats in infection experiments.
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Affiliation(s)
- Judith Olejnik
- Department of Microbiology, Boston University School of Medicine, Boston, Massachusetts, 02118, USA.,National Emerging Infectious Diseases Laboratories, Boston University, Boston, Massachusetts, 02118, USA
| | - Elke Mühlberger
- Department of Microbiology, Boston University School of Medicine, Boston, Massachusetts, 02118, USA.,National Emerging Infectious Diseases Laboratories, Boston University, Boston, Massachusetts, 02118, USA
| | - Adam J Hume
- Department of Microbiology, Boston University School of Medicine, Boston, Massachusetts, 02118, USA.,National Emerging Infectious Diseases Laboratories, Boston University, Boston, Massachusetts, 02118, USA
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14
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Qiu Y, Kajihara M, Harima H, Hang'ombe BM, Nakao R, Hayashida K, Mori-Kajihara A, Changula K, Eto Y, Ndebe J, Yoshida R, Takadate Y, Mwizabi D, Kawabata H, Simuunza M, Mweene A, Sawa H, Takada A, Sugimoto C. Molecular characterization and phylogenetic analysis of Trypanosoma spp. detected from striped leaf-nosed bats ( Hipposideros vittatus) in Zambia. INTERNATIONAL JOURNAL FOR PARASITOLOGY-PARASITES AND WILDLIFE 2019; 9:234-238. [PMID: 31198682 PMCID: PMC6555876 DOI: 10.1016/j.ijppaw.2019.04.009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/17/2018] [Revised: 04/23/2019] [Accepted: 04/24/2019] [Indexed: 01/25/2023]
Abstract
Bat trypanosomes consist of more than 30 trypanosome species from over 70 species of bats. Recent studies suggest that bats play a role in disseminating trypanosomes from African continent to the terrestrial mammals both in the Afrotropic-Palearctic Ecozones and Nearctic Ecozone. However, the diversity, distribution, and evolution of bat trypanosomes are still unclear. To better understand their evolution, more genetic data of bat trypanosomes from a variety of locations are required. During a survey of Borrelia spp. of bats inhabiting a cave in Zambia, we observed flagellate parasites from 5 of 43 hemocultures. Sequence and phylogenetic analyses of the glycosomal glyceraldehyde 3-phosphate dehydrogenase gene (gGAPDH; 572 bp) and the 18S ribosomal RNA gene (18S rRNA gene; 1,079-1,091 bp) revealed that all were Trypanosoma spp. belonged to the Trypanosoma cruzi clade. Three and two of them exhibited the similarity with T. conorhini and T. dionisii, respectively. The present study provides the first genetic data on Trypanosoma spp. of bats inhabiting Zambia.
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Affiliation(s)
- Yongjin Qiu
- Hokudai Center for Zoonosis Control in Zambia, School of Veterinary Medicine, The University of Zambia, PO Box 32379, Lusaka, 10101, Zambia
| | - Masahiro Kajihara
- Division of Global Epidemiology, Hokkaido University Research Center for Zoonosis Control, Kita-20 Nishi-10, Kita-ku, Sapporo, Hokkaido, 001-0020, Japan
| | - Hayato Harima
- Hokudai Center for Zoonosis Control in Zambia, School of Veterinary Medicine, The University of Zambia, PO Box 32379, Lusaka, 10101, Zambia
| | - Bernard Mudenda Hang'ombe
- Department of Para-clinical Studies, School of Veterinary Medicine, The University of Zambia, P.O. Box 32379, Lusaka, 10101, Zambia
- Global Virus Network Affilate Center of Excellence, The University of Zambia, P.O. Box 32379, Lusaka, 10101, Zambia
- African Center of Excellence for Infectious Diseases of Humans and Animals, P.O. Box 32379, Lusaka, 10101, Zambia
| | - Ryo Nakao
- Laboratory of Veterinary Parasitology, Graduate School of Infectious Diseases, Hokkaido University, Kita-18 Nishi-9, Kita-ku, Sapporo, Hokkaido, 060-0818, Japan
| | - Kyoko Hayashida
- Division of Collaboration and Education, Hokkaido University Research Center for Zoonosis Control, Kita-20 Nishi-10, Kita-ku, Sapporo, Hokkaido, 001-0020, Japan
| | - Akina Mori-Kajihara
- Division of Global Epidemiology, Hokkaido University Research Center for Zoonosis Control, Kita-20 Nishi-10, Kita-ku, Sapporo, Hokkaido, 001-0020, Japan
| | - Katendi Changula
- Department of Para-clinical Studies, School of Veterinary Medicine, The University of Zambia, P.O. Box 32379, Lusaka, 10101, Zambia
| | - Yoshiki Eto
- Division of Global Epidemiology, Hokkaido University Research Center for Zoonosis Control, Kita-20 Nishi-10, Kita-ku, Sapporo, Hokkaido, 001-0020, Japan
| | - Joseph Ndebe
- Department of Disease Control, School of Veterinary Medicine, University of Zambia, P.O. Box 32379, Lusaka, 10101, Zambia
| | - Reiko Yoshida
- Division of Global Epidemiology, Hokkaido University Research Center for Zoonosis Control, Kita-20 Nishi-10, Kita-ku, Sapporo, Hokkaido, 001-0020, Japan
| | - Yoshihiro Takadate
- Division of Global Epidemiology, Hokkaido University Research Center for Zoonosis Control, Kita-20 Nishi-10, Kita-ku, Sapporo, Hokkaido, 001-0020, Japan
| | - Daniel Mwizabi
- Department of National Parks and Wildlife, Ministry of Tourism and Arts, Chilanga, 101010, Zambia
| | - Hiroki Kawabata
- Department of Bacteriology-I, National Institute of Infectious Diseases, Toyama 1-23-1, Shinjyuku-ku, Tokyo, 162-8640, Japan
| | - Martin Simuunza
- Department of Disease Control, School of Veterinary Medicine, University of Zambia, P.O. Box 32379, Lusaka, 10101, Zambia
| | - Aaron Mweene
- Global Virus Network Affilate Center of Excellence, The University of Zambia, P.O. Box 32379, Lusaka, 10101, Zambia
- African Center of Excellence for Infectious Diseases of Humans and Animals, P.O. Box 32379, Lusaka, 10101, Zambia
- Department of Disease Control, School of Veterinary Medicine, University of Zambia, P.O. Box 32379, Lusaka, 10101, Zambia
| | - Hirofumi Sawa
- Global Virus Network Affilate Center of Excellence, The University of Zambia, P.O. Box 32379, Lusaka, 10101, Zambia
- African Center of Excellence for Infectious Diseases of Humans and Animals, P.O. Box 32379, Lusaka, 10101, Zambia
- Department of Disease Control, School of Veterinary Medicine, University of Zambia, P.O. Box 32379, Lusaka, 10101, Zambia
- Global Station for Zoonosis Control, Global Institution for Collaborative Research and Education (GI-CoRE), Hokkaido University, Kita-20 Nishi-10, Kita-ku, Sapporo, Hokkaido, 001-0020, Japan
- Global Virus Network, 725 West Lombard St, Baltimore, MD, 21201, USA
- Division of Molecular Pathology, Hokkaido University Research Center for Zoonosis Control, Kita-20 Nishi-10, Kita-ku, Sapporo, Hokkaido, 001-0020, Japan
| | - Ayato Takada
- Division of Global Epidemiology, Hokkaido University Research Center for Zoonosis Control, Kita-20 Nishi-10, Kita-ku, Sapporo, Hokkaido, 001-0020, Japan
- Department of Disease Control, School of Veterinary Medicine, University of Zambia, P.O. Box 32379, Lusaka, 10101, Zambia
- Global Station for Zoonosis Control, Global Institution for Collaborative Research and Education (GI-CoRE), Hokkaido University, Kita-20 Nishi-10, Kita-ku, Sapporo, Hokkaido, 001-0020, Japan
| | - Chihiro Sugimoto
- Division of Collaboration and Education, Hokkaido University Research Center for Zoonosis Control, Kita-20 Nishi-10, Kita-ku, Sapporo, Hokkaido, 001-0020, Japan
- Department of Disease Control, School of Veterinary Medicine, University of Zambia, P.O. Box 32379, Lusaka, 10101, Zambia
- Global Station for Zoonosis Control, Global Institution for Collaborative Research and Education (GI-CoRE), Hokkaido University, Kita-20 Nishi-10, Kita-ku, Sapporo, Hokkaido, 001-0020, Japan
- Corresponding author. Division of Collaboration and Education, Hokkaido University Research Center for Zoonosis Control, Kita 20, Nishi 10, Kita-Ku, Sapporo, Hokkaido, 001-0020, Japan.
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First Evidence of Antibodies Against Lloviu Virus in Schreiber's Bent-Winged Insectivorous Bats Demonstrate a Wide Circulation of the Virus in Spain. Viruses 2019; 11:v11040360. [PMID: 31010201 PMCID: PMC6521100 DOI: 10.3390/v11040360] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Revised: 04/16/2019] [Accepted: 04/17/2019] [Indexed: 11/16/2022] Open
Abstract
Although Lloviu virus (LLOV) was discovered in the carcasses of insectivorous Schreiber’s Bent-winged bats in the caves of Northern Spain in 2002, its infectivity and pathogenicity remain unclear. We examined the seroprevalence of LLOV in potentially exposed Schreiber’s Bent-winged bats (n = 60), common serotine bats (n = 10) as controls, and humans (n = 22) using an immunoblot assay. We found antibodies against LLOV GP2 in all of Schreiber’s Bent-winged bats serum pools, but not in any of the common serotine bats and human pools tested. To confirm this seroreactivity, 52 serums were individually tested using Domain Programmable Arrays (DPA), a phage display based-system serology technique for profiling filovirus epitopes. A serological signature against different LLOV proteins was obtained in 19/52 samples tested (36.5%). The immunodominant response was in the majority specific to LLOV-unique epitopes, confirming that the serological response detected was to LLOV. To our knowledge, this is the first serological evidence of LLOV exposure in live captured Schreiber’s Bent-winged bats, dissociating LLOV circulation as the cause of the previously reported die-offs.
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