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Gao Y, Stein M, Oshana L, Zhao W, Matsubara S, Stich B. Exploring natural genetic variation in photosynthesis-related traits of barley in the field. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:4904-4925. [PMID: 38700102 DOI: 10.1093/jxb/erae198] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Accepted: 05/01/2024] [Indexed: 05/05/2024]
Abstract
Optimizing photosynthesis is considered an important strategy for improving crop yields to ensure food security. To evaluate the potential of using photosynthesis-related parameters in crop breeding programs, we measured chlorophyll fluorescence along with growth-related and morphological traits of 23 barley inbred lines across different developmental stages in field conditions. The photosynthesis-related parameters were highly variable, changing with light intensity and developmental progression of plants. Yet, the variation in photosystem II quantum yield observed among the inbred lines in the field largely reflected the variation in CO2 assimilation properties in controlled climate chamber conditions, confirming that the chlorophyll fluorescence-based technique can provide proxy parameters of photosynthesis to explore genetic variation under field conditions. Heritability (H2) of the photosynthesis-related parameters in the field ranged from 0.16 for the quantum yield of non-photochemical quenching to 0.78 for the fraction of open photosystem II center. Two parameters, the maximum photosystem II efficiency in the light-adapted state (H2=0.58) and the total non-photochemical quenching (H2=0.53), showed significant positive and negative correlations, respectively, with yield-related traits (dry weight per plant and net straw weight) in the barley inbred lines. These results indicate the possibility of improving crop yield through optimizing photosynthetic light use efficiency by conventional breeding programs.
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Affiliation(s)
- Yanrong Gao
- Institute of Quantitative Genetics and Genomics of Plants, Heinrich Heine University, Düsseldorf, Germany
- IBG-2: Plant Sciences, Forschungszentrum Jülich, Jülich, Germany
| | - Merle Stein
- Institute of Quantitative Genetics and Genomics of Plants, Heinrich Heine University, Düsseldorf, Germany
| | - Lilian Oshana
- IBG-2: Plant Sciences, Forschungszentrum Jülich, Jülich, Germany
| | - Wenxia Zhao
- Institute of Quantitative Genetics and Genomics of Plants, Heinrich Heine University, Düsseldorf, Germany
- Xinjiang Seed Industry Development Center of China, Urumqi, China
| | - Shizue Matsubara
- IBG-2: Plant Sciences, Forschungszentrum Jülich, Jülich, Germany
- Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University, Düsseldorf, Germany
| | - Benjamin Stich
- Institute of Quantitative Genetics and Genomics of Plants, Heinrich Heine University, Düsseldorf, Germany
- Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University, Düsseldorf, Germany
- Julius Kühn Institute (JKI) - Federal Research Centre for Cultivated Plants, Institute for Breeding Research on Agricultural Crops, Sanitz, Germany
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2
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Ma B, Zhang Y, Fan Y, Zhang L, Li X, Zhang QQ, Shu Q, Huang J, Chen G, Li Q, Gao Q, Zhu XG, He Z, Wang P. Genetic improvement of phosphate-limited photosynthesis for high yield in rice. Proc Natl Acad Sci U S A 2024; 121:e2404199121. [PMID: 39136985 PMCID: PMC11348269 DOI: 10.1073/pnas.2404199121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2024] [Accepted: 06/25/2024] [Indexed: 08/29/2024] Open
Abstract
Low phosphate (Pi) availability decreases photosynthesis, with phosphate limitation of photosynthesis occurring particularly during grain filling of cereal crops; however, effective genetic solutions remain to be established. We previously discovered that rice phosphate transporter OsPHO1;2 controls seed (sink) development through Pi reallocation during grain filling. Here, we find that OsPHO1;2 regulates Pi homeostasis and thus photosynthesis in leaves (source). Loss-of-function of OsPHO1;2 decreased Pi levels in leaves, leading to decreased photosynthetic electron transport activity, CO2 assimilation rate, and early occurrence of phosphate-limited photosynthesis. Interestingly, ectopic expression of OsPHO1;2 greatly increased Pi availability, and thereby, increased photosynthetic rate in leaves during grain filling, contributing to increased yield. This was supported by the effect of foliar Pi application. Moreover, analysis of core rice germplasm resources revealed that higher OsPHO1;2 expression was associated with enhanced photosynthesis and yield potential compared to those with lower expression. These findings reveal that phosphate-limitation of photosynthesis can be relieved via a genetic approach, and the OsPHO1;2 gene can be employed to reinforce crop breeding strategies for achieving higher photosynthetic efficiency.
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Affiliation(s)
- Bin Ma
- Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai200032, China
- Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding/Zhongshan Biological Breeding Laboratory/Key Laboratory of Plant Functional Genomics of the Ministry of Education, Agricultural College of Yangzhou University, Yangzhou225009, China
| | - You Zhang
- Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai200032, China
| | - Yanfei Fan
- Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai200032, China
- University of the Chinese Academy of Sciences, Beijing100049, China
| | - Lin Zhang
- Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou225009, China
| | - Xiaoyuan Li
- Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai200032, China
- Institute of Biotechnology, Hangzhou Academy of Agricultural Sciences, Hangzhou310024, China
| | - Qi-Qi Zhang
- Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai200032, China
- University of the Chinese Academy of Sciences, Beijing100049, China
| | - Qingyao Shu
- National Key Laboratory of Rice Biology, Institute of Crop Sciences, Zhejiang University, Hangzhou310058, Zhejiang, China
| | - Jirong Huang
- Shanghai Key Laboratory of Plant Molecular Sciences, College of Life Sciences, Shanghai Normal University, Shanghai200234, China
| | - Genyun Chen
- Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai200032, China
| | - Qun Li
- Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai200032, China
| | - Qifei Gao
- Shanghai Collaborative Innovation Center of Agri-Seeds, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai200240, China
| | - Xin-Guang Zhu
- Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai200032, China
- Key Laboratory of Plant Carbon Capture, Chinese Academy of Sciences, Shanghai200032, China
| | - Zuhua He
- Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai200032, China
| | - Peng Wang
- Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai200032, China
- Key Laboratory of Plant Carbon Capture, Chinese Academy of Sciences, Shanghai200032, China
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3
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Stirbet A, Guo Y, Lazár D, Govindjee G. From leaf to multiscale models of photosynthesis: applications and challenges for crop improvement. PHOTOSYNTHESIS RESEARCH 2024; 161:21-49. [PMID: 38619700 DOI: 10.1007/s11120-024-01083-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Accepted: 01/29/2024] [Indexed: 04/16/2024]
Abstract
To keep up with the growth of human population and to circumvent deleterious effects of global climate change, it is essential to enhance crop yield to achieve higher production. Here we review mathematical models of oxygenic photosynthesis that are extensively used, and discuss in depth a subset that accounts for diverse approaches providing solutions to our objective. These include models (1) to study different ways to enhance photosynthesis, such as fine-tuning antenna size, photoprotection and electron transport; (2) to bioengineer carbon metabolism; and (3) to evaluate the interactions between the process of photosynthesis and the seasonal crop dynamics, or those that have included statistical whole-genome prediction methods to quantify the impact of photosynthesis traits on the improvement of crop yield. We conclude by emphasizing that the results obtained in these studies clearly demonstrate that mathematical modelling is a key tool to examine different approaches to improve photosynthesis for better productivity, while effective multiscale crop models, especially those that also include remote sensing data, are indispensable to verify different strategies to obtain maximized crop yields.
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Affiliation(s)
| | - Ya Guo
- Key Laboratory of Advanced Process Control for Light Industry, Ministry of Education Jiangnan University, Wuxi, 214122, China
| | - Dušan Lazár
- Department of Biophysics, Faculty of Science, Palacký Univesity, Šlechtitelů 27, 78371, Olomouc, Czech Republic
| | - Govindjee Govindjee
- Department of Biochemistry, Department of Plant Biology, and the Center of Biophysics & Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
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Yan Y, Duan F, Li X, Zhao R, Hou P, Zhao M, Li S, Wang Y, Dai T, Zhou W. Photosynthetic capacity and assimilate transport of the lower canopy influence maize yield under high planting density. PLANT PHYSIOLOGY 2024; 195:2652-2667. [PMID: 38590166 PMCID: PMC11288763 DOI: 10.1093/plphys/kiae204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Revised: 03/08/2024] [Accepted: 03/14/2024] [Indexed: 04/10/2024]
Abstract
Photosynthesis is a major trait of interest for the development of high-yield crop plants. However, little is known about the effects of high-density planting on photosynthetic responses at the whole-canopy level. Using the high-yielding maize (Zea mays L.) cultivars "LY66," "MC670," and "JK968," we conducted a 2-yr field experiment to assess ear development in addition to leaf characteristics and photosynthetic parameters in each canopy layer at 4 planting densities. Increased planting density promoted high grain yield and population-scale biomass accumulation despite reduced per-plant productivity. MC670 had the strongest adaptability to high-density planting conditions. A physiological analysis showed that increased planting density primarily led to decreases in the single-leaf area above the ear for LY66 and MC670 and below the ear for JK968. Furthermore, high planting density decreased chlorophyll content and the photosynthetic rate due to decreased canopy transmission, leading to severe decreases in single-plant biomass accumulation in the lower canopy. Moreover, increased planting density improved presilking biomass transfer, especially in the lower canopy. The yield showed significant positive relationships with photosynthesis and biomass in the lower canopy, demonstrating the important contributions of these leaves to grain yield under dense planting conditions. Increased planting density led to retarded ear development as a consequence of reduced glucose and fructose contents in the ears, indicating reductions in sugar transport that were associated with limited sink organ development, reduced kernel number, and yield loss. Overall, these findings highlighted the photosynthetic capacities of the lower canopy as promising targets for improving maize yield under dense planting conditions.
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Affiliation(s)
- Yanyan Yan
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
- Key Laboratory of Crop Physiology Ecology and Production Management, Ministry of Agriculture, Nanjing Agricultural University, Nanjing 210095, China
| | - Fengying Duan
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Xia Li
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Rulang Zhao
- Ningxia Academy of Agriculture and Forestry Sciences, Crops Research Institute, Yinchuan 750105, China
| | - Peng Hou
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Ming Zhao
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Shaokun Li
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Yonghong Wang
- Ningxia Academy of Agriculture and Forestry Sciences, Crops Research Institute, Yinchuan 750105, China
| | - Tingbo Dai
- Key Laboratory of Crop Physiology Ecology and Production Management, Ministry of Agriculture, Nanjing Agricultural University, Nanjing 210095, China
| | - Wenbin Zhou
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
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5
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Chen L, Ghannoum O, Furbank RT. Sugar sensing in C4 source leaves: a gap that needs to be filled. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:3818-3834. [PMID: 38642398 PMCID: PMC11233418 DOI: 10.1093/jxb/erae166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 04/18/2024] [Indexed: 04/22/2024]
Abstract
Plant growth depends on sugar production and export by photosynthesizing source leaves and sugar allocation and import by sink tissues (grains, roots, stems, and young leaves). Photosynthesis and sink demand are tightly coordinated through metabolic (substrate, allosteric) feedback and signalling (sugar, hormones) mechanisms. Sugar signalling integrates sugar production with plant development and environmental cues. In C3 plants (e.g. wheat and rice), it is well documented that sugar accumulation in source leaves, due to source-sink imbalance, negatively feeds back on photosynthesis and plant productivity. However, we have a limited understanding about the molecular mechanisms underlying those feedback regulations, especially in C4 plants (e.g. maize, sorghum, and sugarcane). Recent work with the C4 model plant Setaria viridis suggested that C4 leaves have different sugar sensing thresholds and behaviours relative to C3 counterparts. Addressing this research priority is critical because improving crop yield requires a better understanding of how plants coordinate source activity with sink demand. Here we review the literature, present a model of action for sugar sensing in C4 source leaves, and suggest ways forward.
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Affiliation(s)
- Lily Chen
- ARC Centre of Excellence for Translational Photosynthesis, Hawkesbury Institute for the Environment, Western Sydney University, Hawkesbury Campus, NSW, 2753, Australia
| | - Oula Ghannoum
- ARC Centre of Excellence for Translational Photosynthesis, Hawkesbury Institute for the Environment, Western Sydney University, Hawkesbury Campus, NSW, 2753, Australia
| | - Robert T Furbank
- ARC Centre of Excellence for Translational Photosynthesis, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
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Tiwari D, Kumar N, Bongirwar R, Shukla P. Nutraceutical prospects of genetically engineered cyanobacteria- technological updates and significance. World J Microbiol Biotechnol 2024; 40:263. [PMID: 38980547 DOI: 10.1007/s11274-024-04064-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Accepted: 06/23/2024] [Indexed: 07/10/2024]
Abstract
Genetically engineered cyanobacterial strains that have improved growth rate, biomass productivity, and metabolite productivity could be a better option for sustainable bio-metabolite production. The global demand for biobased metabolites with nutraceuticals and health benefits has increased due to their safety and plausible therapeutic and nutritional utility. Cyanobacteria are solar-powered green cellular factories that can be genetically tuned to produce metabolites with nutraceutical and pharmaceutical benefits. The present review discusses biotechnological endeavors for producing bioprospective compounds from genetically engineered cyanobacteria and discusses the challenges and troubleshooting faced during metabolite production. This review explores the cyanobacterial versatility, the use of engineered strains, and the techno-economic challenges associated with scaling up metabolite production from cyanobacteria. Challenges to produce cyanobacterial bioactive compounds with remarkable nutraceutical values have been discussed. Additionally, this review also summarises the challenges and future prospects of metabolite production from genetically engineered cyanobacteria as a sustainable approach.
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Affiliation(s)
- Deepali Tiwari
- Enzyme Technology and Protein Bioinformatics Laboratory, School of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi, 221005, Uttar Pradesh, India
| | - Niwas Kumar
- Enzyme Technology and Protein Bioinformatics Laboratory, School of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi, 221005, Uttar Pradesh, India
| | - Riya Bongirwar
- Enzyme Technology and Protein Bioinformatics Laboratory, School of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi, 221005, Uttar Pradesh, India
| | - Pratyoosh Shukla
- Enzyme Technology and Protein Bioinformatics Laboratory, School of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi, 221005, Uttar Pradesh, India.
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7
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Cong Y, Chen X, Xing J, Li X, Pang S, Liu H. Nitric oxide signal is required for glutathione-induced enhancement of photosynthesis in salt-stressed S olanum lycopersicum L. FRONTIERS IN PLANT SCIENCE 2024; 15:1413653. [PMID: 38952846 PMCID: PMC11215142 DOI: 10.3389/fpls.2024.1413653] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/07/2024] [Accepted: 05/31/2024] [Indexed: 07/03/2024]
Abstract
Reduced glutathione (γ-glutamyl-cysteinyl-glycine, GSH), the primary non-protein sulfhydryl group in organisms, plays a pivotal role in the plant salt stress response. This study aimed to explore the impact of GSH on the photosynthetic apparatus, and carbon assimilation in tomato plants under salt stress, and then investigate the role of nitric oxide (NO) in this process. The investigation involved foliar application of 5 mM GSH, 0.1% (w/v) hemoglobin (Hb, a nitric oxide scavenger), and GSH+Hb on the endogenous NO levels, rapid chlorophyll fluorescence, enzyme activities, and gene expression related to the Calvin cycle in tomato seedlings (Solanum lycopersicum L. cv. 'Zhongshu No. 4') subjected short-term salt stress (100 mM NaCl) for 24, 48 and 72 hours. GSH treatment notably boosted nitrate reductase (NR) and NO synthase (NOS) activities, elevating endogenous NO signaling in salt-stressed tomato seedling leaves. It also mitigated chlorophyll fluorescence (OJIP) curve distortion and damage to the oxygen-evolving complex (OEC) induced by salt stress. Furthermore, GSH improved photosystem II (PSII) electron transfer efficiency, reduced QA - accumulation, and countered salt stress effects on photosystem I (PSI) redox properties, enhancing the light energy absorption index (PIabs). Additionally, GSH enhanced key enzyme activities in the Calvin cycle and upregulated their genes. Exogenous GSH optimized PSII energy utilization via endogenous NO, safeguarded the photosynthetic reaction center, improved photochemical and energy efficiency, and boosted carbon assimilation, ultimately enhancing net photosynthetic efficiency (Pn) in salt-stressed tomato seedling leaves. Conversely, Hb hindered Pn reduction and NO signaling under salt stress and weakened the positive effects of GSH on NO levels, photosynthetic apparatus, and carbon assimilation in tomato plants. Thus, the positive regulation of photosynthesis in tomato seedlings under salt stress by GSH requires the involvement of NO.
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Affiliation(s)
- Yundan Cong
- Department of Horticulture, Agricultural College, Shihezi University, Shihezi, Xinjiang, China
- Key Laboratory of Special Fruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization of Xinjiang Production and Contruction Crops, Shihezi, Xinjiang, China
| | - Xianjun Chen
- School of Life and Health Science, Kaili University, Kaili, Guizhou, China
| | - Jiayi Xing
- Department of Horticulture, Agricultural College, Shihezi University, Shihezi, Xinjiang, China
- Key Laboratory of Special Fruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization of Xinjiang Production and Contruction Crops, Shihezi, Xinjiang, China
| | - Xuezhen Li
- Department of Horticulture, Agricultural College, Shihezi University, Shihezi, Xinjiang, China
- Key Laboratory of Special Fruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization of Xinjiang Production and Contruction Crops, Shihezi, Xinjiang, China
| | - Shengqun Pang
- Department of Horticulture, Agricultural College, Shihezi University, Shihezi, Xinjiang, China
- Key Laboratory of Special Fruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization of Xinjiang Production and Contruction Crops, Shihezi, Xinjiang, China
| | - Huiying Liu
- Department of Horticulture, Agricultural College, Shihezi University, Shihezi, Xinjiang, China
- Key Laboratory of Special Fruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization of Xinjiang Production and Contruction Crops, Shihezi, Xinjiang, China
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Maslennikova D, Knyazeva I, Vershinina O, Titenkov A, Lastochkina O. Contribution of Antioxidant System Components to the Long-Term Physiological and Protective Effect of Salicylic Acid on Wheat under Salinity Conditions. PLANTS (BASEL, SWITZERLAND) 2024; 13:1569. [PMID: 38891377 PMCID: PMC11174383 DOI: 10.3390/plants13111569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Revised: 05/27/2024] [Accepted: 06/04/2024] [Indexed: 06/21/2024]
Abstract
Salicylic acid (SA) plays a crucial role in regulating plant growth and development and mitigating the negative effects of various stresses, including salinity. In this study, the effect of 50 μM SA on the physiological and biochemical parameters of wheat plants under normal and stress conditions was investigated. The results showed that on the 28th day of the growing season, SA pretreatment continued to stimulate the growth of wheat plants. This was evident through an increase in shoot length and leaf area, with the regulation of leaf blade width playing a significant role in this effect. Additionally, SA improved photosynthesis by increasing the content of chlorophyll a (Chl a) and carotenoids (Car), resulting in an increased TAP (total amount of pigments) index in the leaves. Furthermore, SA treatment led to a balanced increase in the levels of reduced glutathione (GSH) and oxidized glutathione (GSSG) in the leaves, accompanied by a slight but significant accumulation of ascorbic acid (ASA), hydrogen peroxide (H2O2), proline, and the activation of glutathione reductase (GR) and ascorbate peroxidase (APX). Exposure to salt stress for 28 days resulted in a reduction in length and leaf area, photosynthetic pigments, and GSH and ASA content in wheat leaves. It also led to the accumulation of H2O2 and proline and significant activation of GR and APX. However, SA pretreatment exhibited a long-term growth-stimulating and protective effect under stress conditions. It significantly mitigated the negative impacts of salinity on leaf area, photosynthetic pigments, proline accumulation, lipid peroxidation, and H2O2. Furthermore, SA reduced the salinity-induced depletion of GSH and ASA levels, which was associated with the modulation of GR and APX activities. In small-scale field experiments conducted under natural growing conditions, pre-sowing seed treatment with 50 μM SA improved the main indicators of grain yield and increased the content of essential amino acids in wheat grains. Thus, SA pretreatment can be considered an effective approach for providing prolonged protection to wheat plants under salinity and improving grain yield and quality.
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Affiliation(s)
- Dilara Maslennikova
- Ufa Federal Research Center, Institute of Biochemistry and Genetics, 450054 Ufa, Russia;
| | - Inna Knyazeva
- Federal State Budgetary Scientific Institution «Federal Scientific Agroengineering Center VIM», 109428 Moscow, Russia; (I.K.); (O.V.); (A.T.)
| | - Oksana Vershinina
- Federal State Budgetary Scientific Institution «Federal Scientific Agroengineering Center VIM», 109428 Moscow, Russia; (I.K.); (O.V.); (A.T.)
| | - Andrey Titenkov
- Federal State Budgetary Scientific Institution «Federal Scientific Agroengineering Center VIM», 109428 Moscow, Russia; (I.K.); (O.V.); (A.T.)
| | - Oksana Lastochkina
- Ufa Federal Research Center, Institute of Biochemistry and Genetics, 450054 Ufa, Russia;
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9
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Steichen S, Deshpande A, Mosey M, Loob J, Douchi D, Knoshaug EP, Brown S, Nielsen R, Weissman J, Carrillo LR, Laurens LML. Central transcriptional regulator controls photosynthetic growth and carbon storage in response to high light. Nat Commun 2024; 15:4842. [PMID: 38844786 PMCID: PMC11156908 DOI: 10.1038/s41467-024-49090-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 05/14/2024] [Indexed: 06/09/2024] Open
Abstract
Carbon capture and biochemical storage are some of the primary drivers of photosynthetic yield and productivity. To elucidate the mechanisms governing carbon allocation, we designed a photosynthetic light response test system for genetic and metabolic carbon assimilation tracking, using microalgae as simplified plant models. The systems biology mapping of high light-responsive photophysiology and carbon utilization dynamics between two variants of the same Picochlorum celeri species, TG1 and TG2 elucidated metabolic bottlenecks and transport rates of intermediates using instationary 13C-fluxomics. Simultaneous global gene expression dynamics showed 73% of the annotated genes responding within one hour, elucidating a singular, diel-responsive transcription factor, closely related to the CCA1/LHY clock genes in plants, with significantly altered expression in TG2. Transgenic P. celeri TG1 cells expressing the TG2 CCA1/LHY gene, showed 15% increase in growth rates and 25% increase in storage carbohydrate content, supporting a coordinating regulatory function for a single transcription factor.
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Affiliation(s)
- Seth Steichen
- Bioenergy Science and Technology Directorate, National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO, 80401, USA
| | - Arnav Deshpande
- Bioenergy Science and Technology Directorate, National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO, 80401, USA
| | - Megan Mosey
- Bioenergy Science and Technology Directorate, National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO, 80401, USA
| | - Jessica Loob
- Bioenergy Science and Technology Directorate, National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO, 80401, USA
| | - Damien Douchi
- Bioenergy Science and Technology Directorate, National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO, 80401, USA
| | - Eric P Knoshaug
- Bioenergy Science and Technology Directorate, National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO, 80401, USA
| | - Stuart Brown
- ExxonMobil Technology and Engineering Co. (EMTEC), CLD286 Annandale, 1545 Route 22 East, Annandale, NJ, 08801, USA
| | - Robert Nielsen
- ExxonMobil Technology and Engineering Co. (EMTEC), CLD286 Annandale, 1545 Route 22 East, Annandale, NJ, 08801, USA
| | - Joseph Weissman
- ExxonMobil Technology and Engineering Co. (EMTEC), CLD286 Annandale, 1545 Route 22 East, Annandale, NJ, 08801, USA
| | - L Ruby Carrillo
- ExxonMobil Technology and Engineering Co. (EMTEC), CLD286 Annandale, 1545 Route 22 East, Annandale, NJ, 08801, USA
| | - Lieve M L Laurens
- Bioenergy Science and Technology Directorate, National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO, 80401, USA.
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10
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Fu J, McKinley B, James B, Chrisler W, Markillie LM, Gaffrey MJ, Mitchell HD, Riaz MR, Marcial B, Orr G, Swaminathan K, Mullet J, Marshall-Colon A. Cell-type-specific transcriptomics uncovers spatial regulatory networks in bioenergy sorghum stems. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 118:1668-1688. [PMID: 38407828 DOI: 10.1111/tpj.16690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 12/17/2023] [Accepted: 02/07/2024] [Indexed: 02/27/2024]
Abstract
Bioenergy sorghum is a low-input, drought-resilient, deep-rooting annual crop that has high biomass yield potential enabling the sustainable production of biofuels, biopower, and bioproducts. Bioenergy sorghum's 4-5 m stems account for ~80% of the harvested biomass. Stems accumulate high levels of sucrose that could be used to synthesize bioethanol and useful biopolymers if information about cell-type gene expression and regulation in stems was available to enable engineering. To obtain this information, laser capture microdissection was used to isolate and collect transcriptome profiles from five major cell types that are present in stems of the sweet sorghum Wray. Transcriptome analysis identified genes with cell-type-specific and cell-preferred expression patterns that reflect the distinct metabolic, transport, and regulatory functions of each cell type. Analysis of cell-type-specific gene regulatory networks (GRNs) revealed that unique transcription factor families contribute to distinct regulatory landscapes, where regulation is organized through various modes and identifiable network motifs. Cell-specific transcriptome data was combined with known secondary cell wall (SCW) networks to identify the GRNs that differentially activate SCW formation in vascular sclerenchyma and epidermal cells. The spatial transcriptomic dataset provides a valuable source of information about the function of different sorghum cell types and GRNs that will enable the engineering of bioenergy sorghum stems, and an interactive web application developed during this project will allow easy access and exploration of the data (https://mc-lab.shinyapps.io/lcm-dataset/).
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Affiliation(s)
- Jie Fu
- Department of Plant Biology, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Urbana, Illinois, 61801, USA
| | - Brian McKinley
- Department of Biochemistry and Biophysics, Texas A&M University, College Station, Texas, 77843, USA
- DOE Great Lakes Bioenergy Resource Center, Madison, Wisconsin, 53726, USA
| | - Brandon James
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Urbana, Illinois, 61801, USA
- HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, 35806, USA
| | - William Chrisler
- Pacific Northwest National Laboratory, Richland, Washington, 99354, USA
| | | | - Matthew J Gaffrey
- Pacific Northwest National Laboratory, Richland, Washington, 99354, USA
| | - Hugh D Mitchell
- Pacific Northwest National Laboratory, Richland, Washington, 99354, USA
| | - Muhammad Rizwan Riaz
- Department of Plant Biology, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA
| | - Brenda Marcial
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Urbana, Illinois, 61801, USA
- HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, 35806, USA
| | - Galya Orr
- Pacific Northwest National Laboratory, Richland, Washington, 99354, USA
| | - Kankshita Swaminathan
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Urbana, Illinois, 61801, USA
- HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, 35806, USA
| | - John Mullet
- Department of Biochemistry and Biophysics, Texas A&M University, College Station, Texas, 77843, USA
- DOE Great Lakes Bioenergy Resource Center, Madison, Wisconsin, 53726, USA
| | - Amy Marshall-Colon
- Department of Plant Biology, University of Illinois Urbana-Champaign, Urbana, Illinois, 61801, USA
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Urbana, Illinois, 61801, USA
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11
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Karthick PV, Senthil A, Djanaguiraman M, Anitha K, Kuttimani R, Boominathan P, Karthikeyan R, Raveendran M. Improving Crop Yield through Increasing Carbon Gain and Reducing Carbon Loss. PLANTS (BASEL, SWITZERLAND) 2024; 13:1317. [PMID: 38794389 PMCID: PMC11124956 DOI: 10.3390/plants13101317] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Revised: 04/07/2024] [Accepted: 04/10/2024] [Indexed: 05/26/2024]
Abstract
Photosynthesis is a process where solar energy is utilized to convert atmospheric CO2 into carbohydrates, which forms the basis for plant productivity. The increasing demand for food has created a global urge to enhance yield. Earlier, the plant breeding program was targeting the yield and yield-associated traits to enhance the crop yield. However, the yield cannot be further improved without improving the leaf photosynthetic rate. Hence, in this review, various strategies to enhance leaf photosynthesis were presented. The most promising strategies were the optimization of Rubisco carboxylation efficiency, the introduction of a CO2 concentrating mechanism in C3 plants, and the manipulation of photorespiratory bypasses in C3 plants, which are discussed in detail. Improving Rubisco's carboxylation efficiency is possible by engineering targets such as Rubisco subunits, chaperones, and Rubisco activase enzyme activity. Carbon-concentrating mechanisms can be introduced in C3 plants by the adoption of pyrenoid and carboxysomes, which can increase the CO2 concentration around the Rubisco enzyme. Photorespiration is the process by which the fixed carbon is lost through an oxidative process. Different approaches to reduce carbon and nitrogen loss were discussed. Overall, the potential approaches to improve the photosynthetic process and the way forward were discussed in detail.
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Affiliation(s)
- Palanivelu Vikram Karthick
- Department of Crop Physiology, Tamil Nadu Agricultural University, Coimbatore 641003, India; (P.V.K.); (M.D.); (K.A.); (R.K.); (P.B.)
| | - Alagarswamy Senthil
- Department of Crop Physiology, Tamil Nadu Agricultural University, Coimbatore 641003, India; (P.V.K.); (M.D.); (K.A.); (R.K.); (P.B.)
| | - Maduraimuthu Djanaguiraman
- Department of Crop Physiology, Tamil Nadu Agricultural University, Coimbatore 641003, India; (P.V.K.); (M.D.); (K.A.); (R.K.); (P.B.)
| | - Kuppusamy Anitha
- Department of Crop Physiology, Tamil Nadu Agricultural University, Coimbatore 641003, India; (P.V.K.); (M.D.); (K.A.); (R.K.); (P.B.)
| | - Ramalingam Kuttimani
- Department of Crop Physiology, Tamil Nadu Agricultural University, Coimbatore 641003, India; (P.V.K.); (M.D.); (K.A.); (R.K.); (P.B.)
| | - Parasuraman Boominathan
- Department of Crop Physiology, Tamil Nadu Agricultural University, Coimbatore 641003, India; (P.V.K.); (M.D.); (K.A.); (R.K.); (P.B.)
| | - Ramasamy Karthikeyan
- Directorate of Crop Management, Tamil Nadu Agricultural University, Coimbatore 641003, India;
| | - Muthurajan Raveendran
- Directorate of Research, Tamil Nadu Agricultural University, Coimbatore 641003, India;
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12
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Ludwig M, Hartwell J, Raines CA, Simkin AJ. The Calvin-Benson-Bassham cycle in C 4 and Crassulacean acid metabolism species. Semin Cell Dev Biol 2024; 155:10-22. [PMID: 37544777 DOI: 10.1016/j.semcdb.2023.07.013] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Revised: 07/03/2023] [Accepted: 07/25/2023] [Indexed: 08/08/2023]
Abstract
The Calvin-Benson-Bassham (CBB) cycle is the ancestral CO2 assimilation pathway and is found in all photosynthetic organisms. Biochemical extensions to the CBB cycle have evolved that allow the resulting pathways to act as CO2 concentrating mechanisms, either spatially in the case of C4 photosynthesis or temporally in the case of Crassulacean acid metabolism (CAM). While the biochemical steps in the C4 and CAM pathways are known, questions remain on their integration and regulation with CBB cycle activity. The application of omic and transgenic technologies is providing a more complete understanding of the biochemistry of C4 and CAM species and will also provide insight into the CBB cycle in these plants. As the global population increases, new solutions are required to increase crop yields and meet demands for food and other bioproducts. Previous work in C3 species has shown that increasing carbon assimilation through genetic manipulation of the CBB cycle can increase biomass and yield. There may also be options to improve photosynthesis in species using C4 photosynthesis and CAM through manipulation of the CBB cycle in these plants. This is an underexplored strategy and requires more basic knowledge of CBB cycle operation in these species to enable approaches for increased productivity.
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Affiliation(s)
- Martha Ludwig
- School of Molecular Sciences, University of Western Australia, Perth, Western Australia, Australia.
| | - James Hartwell
- Department of Biochemistry and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK
| | | | - Andrew J Simkin
- University of Essex, Wivenhoe Park, Colchester CO4 3SQ, UK; School of Biosciences, University of Kent, Canterbury CT2 7NJ, UK
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13
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Gionfriddo M, Rhodes T, Whitney SM. Perspectives on improving crop Rubisco by directed evolution. Semin Cell Dev Biol 2024; 155:37-47. [PMID: 37085353 DOI: 10.1016/j.semcdb.2023.04.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2023] [Revised: 04/14/2023] [Accepted: 04/15/2023] [Indexed: 04/23/2023]
Abstract
Rubisco catalyses the entry of almost all CO2 into the biosphere and is often the rate-limiting step in plant photosynthesis and growth. Its notoriety as the most abundant protein on Earth stems from the slow and error-prone catalytic properties that require plants, cyanobacteria, algae and photosynthetic bacteria to produce it in high amounts. Efforts to improve the CO2-fixing properties of plant Rubisco has been spurred on by the discovery of more effective isoforms in some algae with the potential to significantly improve crop productivity. Incompatibilities between the protein folding machinery of leaf and algae chloroplasts have, so far, prevented efforts to transplant these more effective Rubisco variants into plants. There is therefore increasing interest in improving Rubisco catalysis by directed (laboratory) evolution. Here we review the advances being made in, and the ongoing challenges with, improving the solubility and/or carboxylation activity of differing non-plant Rubisco lineages. We provide perspectives on new opportunities for the directed evolution of crop Rubiscos and the existing plant transformation capabilities available to evaluate the extent to which Rubisco activity improvements can benefit agricultural productivity.
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Affiliation(s)
- Matteo Gionfriddo
- Plant Science Division, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia; Department of Cellular Biochemistry, Max Planck Institute of Biochemistry, Martinsried 82152, Germany
| | - Timothy Rhodes
- Plant Science Division, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia
| | - Spencer M Whitney
- Plant Science Division, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia.
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14
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Schulz-Mirbach H, Dronsella B, He H, Erb TJ. Creating new-to-nature carbon fixation: A guide. Metab Eng 2024; 82:12-28. [PMID: 38160747 DOI: 10.1016/j.ymben.2023.12.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 12/23/2023] [Accepted: 12/27/2023] [Indexed: 01/03/2024]
Abstract
Synthetic biology aims at designing new biological functions from first principles. These new designs allow to expand the natural solution space and overcome the limitations of naturally evolved systems. One example is synthetic CO2-fixation pathways that promise to provide more efficient ways for the capture and conversion of CO2 than natural pathways, such as the Calvin Benson Bassham (CBB) cycle of photosynthesis. In this review, we provide a practical guideline for the design and realization of such new-to-nature CO2-fixation pathways. We introduce the concept of "synthetic CO2-fixation", and give a general overview over the enzymology and topology of synthetic pathways, before we derive general principles for their design from their eight naturally evolved analogs. We provide a comprehensive summary of synthetic carbon-assimilation pathways and derive a step-by-step, practical guide from the theoretical design to their practical implementation, before ending with an outlook on new developments in the field.
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Affiliation(s)
- Helena Schulz-Mirbach
- Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Str. 10, 35043, Marburg, Germany
| | - Beau Dronsella
- Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Str. 10, 35043, Marburg, Germany; Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam, Germany
| | - Hai He
- Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Str. 10, 35043, Marburg, Germany
| | - Tobias J Erb
- Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Str. 10, 35043, Marburg, Germany; Center for Synthetic Microbiology (SYNMIKRO), Karl-von-Frisch-Str. 16, D-35043, Marburg, Germany.
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15
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Wu A, Truong SH, McCormick R, van Oosterom EJ, Messina CD, Cooper M, Hammer GL. Contrasting leaf-scale photosynthetic low-light response and its temperature dependency are key to differences in crop-scale radiation use efficiency. THE NEW PHYTOLOGIST 2024; 241:2435-2447. [PMID: 38214462 DOI: 10.1111/nph.19537] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Accepted: 12/31/2023] [Indexed: 01/13/2024]
Abstract
Radiation use efficiency (RUE) is a key crop adaptation trait that quantifies the potential amount of aboveground biomass produced by the crop per unit of solar energy intercepted. But it is unclear why elite maize and grain sorghum hybrids differ in their RUE at the crop level. Here, we used a non-traditional top-down approach via canopy photosynthesis modelling to identify leaf-level photosynthetic traits that are key to differences in crop-level RUE. A novel photosynthetic response measurement was developed and coupled with use of a Bayesian model fitting procedure, incorporating a C4 leaf photosynthesis model, to infer cohesive sets of photosynthetic parameters by simultaneously fitting responses to CO2 , light, and temperature. Statistically significant differences between leaf photosynthetic parameters of elite maize and grain sorghum hybrids were found across a range of leaf temperatures, in particular for effects on the quantum yield of photosynthesis, but also for the maximum enzymatic activity of Rubisco and PEPc. Simulation of diurnal canopy photosynthesis predicted that the leaf-level photosynthetic low-light response and its temperature dependency are key drivers of the performance of crop-level RUE, generating testable hypotheses for further physiological analysis and bioengineering applications.
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Affiliation(s)
- Alex Wu
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, St. Lucia, Brisbane, Qld, 4072, Australia
- Australian Research Council Centre of Excellence for Plant Success in Nature and Agriculture, The University of Queensland, St. Lucia, Brisbane, Qld, 4072, Australia
| | - Sandra Huynh Truong
- Predictive Agriculture, Research & Development, Corteva Agriscience, Johnston, IA, 50131, USA
| | - Ryan McCormick
- Predictive Agriculture, Research & Development, Corteva Agriscience, Johnston, IA, 50131, USA
- Gro Intelligence, New York, NY, 10022, USA
| | - Erik J van Oosterom
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, St. Lucia, Brisbane, Qld, 4072, Australia
- Australian Research Council Centre of Excellence for Plant Success in Nature and Agriculture, The University of Queensland, St. Lucia, Brisbane, Qld, 4072, Australia
| | - Carlos D Messina
- Predictive Agriculture, Research & Development, Corteva Agriscience, Johnston, IA, 50131, USA
- Horticultural Sciences Department, University of Florida, Gainesville, FL, 32611, USA
| | - Mark Cooper
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, St. Lucia, Brisbane, Qld, 4072, Australia
- Australian Research Council Centre of Excellence for Plant Success in Nature and Agriculture, The University of Queensland, St. Lucia, Brisbane, Qld, 4072, Australia
| | - Graeme L Hammer
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, St. Lucia, Brisbane, Qld, 4072, Australia
- Australian Research Council Centre of Excellence for Plant Success in Nature and Agriculture, The University of Queensland, St. Lucia, Brisbane, Qld, 4072, Australia
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16
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Raines CA, Cavanagh AP. The Calvin Benson Bassham cycle. Semin Cell Dev Biol 2024; 155:1-2. [PMID: 37716907 DOI: 10.1016/j.semcdb.2023.09.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/18/2023]
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17
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Garen JC, Michaletz ST. Fast Assimilation-Temperature Response: a FAsTeR method for measuring the temperature dependence of leaf-level photosynthesis. THE NEW PHYTOLOGIST 2024; 241:1361-1372. [PMID: 37984070 DOI: 10.1111/nph.19405] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Accepted: 10/27/2023] [Indexed: 11/22/2023]
Abstract
We present the Fast Assimilation-Temperature Response (FAsTeR) method, a new method for measuring plant assimilation-temperature (AT) response that reduces measurement time and increases data density compared with conventional methods. The FAsTeR method subjects plant leaves to a linearly increasing temperature ramp while taking rapid, nonequilibrium measurements of gas exchange variables. Two postprocessing steps are employed to correct measured assimilation rates for nonequilibrium effects and sensor calibration drift. Results obtained with the new method are compared with those from two conventional stepwise methods. Our new method accurately reproduces results obtained from conventional methods, reduces measurement time by a factor of c. 3.3 (from c. 90 to 27 min), and increases data density by a factor of c. 55 (from c. 10 to c. 550 observations). Simulation results demonstrate that increased data density substantially improves confidence in parameter estimates and drastically reduces the influence of noise. By improving measurement speed and data density, the FAsTeR method enables users to ask fundamentally new kinds of ecological and physiological questions, expediting data collection in short-field campaigns, and improving the representativeness of data across species in the literature.
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Affiliation(s)
- Josef C Garen
- Department of Botany and Biodiversity Research Centre, The University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
| | - Sean T Michaletz
- Department of Botany and Biodiversity Research Centre, The University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
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18
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Phillips AL, Ferguson S, Burton RA, Watson-Haigh NS. CLAW: An automated Snakemake workflow for the assembly of chloroplast genomes from long-read data. PLoS Comput Biol 2024; 20:e1011870. [PMID: 38335225 PMCID: PMC10883564 DOI: 10.1371/journal.pcbi.1011870] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Revised: 02/22/2024] [Accepted: 01/29/2024] [Indexed: 02/12/2024] Open
Abstract
Chloroplasts are photosynthetic organelles in algal and plant cells that contain their own genome. Chloroplast genomes are commonly used in evolutionary studies and taxonomic identification and are increasingly becoming a target for crop improvement studies. As DNA sequencing becomes more affordable, researchers are collecting vast swathes of high-quality whole-genome sequence data from laboratory and field settings alike. Whole tissue read libraries sequenced with the primary goal of understanding the nuclear genome will inadvertently contain many reads derived from the chloroplast genome. These whole-genome, whole-tissue read libraries can additionally be used to assemble chloroplast genomes with little to no extra cost. While several tools exist that make use of short-read second generation and third-generation long-read sequencing data for chloroplast genome assembly, these tools may have complex installation steps, inadequate error reporting, poor expandability, and/or lack scalability. Here, we present CLAW (Chloroplast Long-read Assembly Workflow), an easy to install, customise, and use Snakemake tool to assemble chloroplast genomes from chloroplast long-reads found in whole-genome read libraries (https://github.com/aaronphillips7493/CLAW). Using 19 publicly available reference chloroplast genome assemblies and long-read libraries from algal, monocot and eudicot species, we show that CLAW can rapidly produce chloroplast genome assemblies with high similarity to the reference assemblies. CLAW was designed such that users have complete control over parameterisation, allowing individuals to optimise CLAW to their specific use cases. We expect that CLAW will provide researchers (with varying levels of bioinformatics expertise) with an additional resource useful for contributing to the growing number of publicly available chloroplast genome assemblies.
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Affiliation(s)
- Aaron L Phillips
- Department of Food Science, University of Adelaide, Adelaide, South Australia, Australia
| | - Scott Ferguson
- Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Rachel A Burton
- Department of Food Science, University of Adelaide, Adelaide, South Australia, Australia
| | - Nathan S Watson-Haigh
- South Australian Genomics Centre (SAGC), SAHMRI, Adelaide, South Australia, Australia
- Australian Genome Research Facility, Victorian Comprehensive Cancer Centre, Melbourne, Victoria, Australia
- Alkahest Inc., San Carlos, California, United States of America
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19
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Seth P, Sebastian J. Plants and global warming: challenges and strategies for a warming world. PLANT CELL REPORTS 2024; 43:27. [PMID: 38163826 DOI: 10.1007/s00299-023-03083-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 10/15/2023] [Indexed: 01/03/2024]
Abstract
KEY MESSAGE In this review, we made an attempt to create a holistic picture of plant response to a rising temperature environment and its impact by covering all aspects from temperature perception to thermotolerance. This comprehensive account describing the molecular mechanisms orchestrating these responses and potential mitigation strategies will be helpful for understanding the impact of global warming on plant life. Organisms need to constantly recalibrate development and physiology in response to changes in their environment. Climate change-associated global warming is amplifying the intensity and periodicity of these changes. Being sessile, plants are particularly vulnerable to variations happening around them. These changes can cause structural, metabolomic, and physiological perturbations, leading to alterations in the growth program and in extreme cases, plant death. In general, plants have a remarkable ability to respond to these challenges, supported by an elaborate mechanism to sense and respond to external changes. Once perceived, plants integrate these signals into the growth program so that their development and physiology can be modulated befittingly. This multifaceted signaling network, which helps plants to establish acclimation and survival responses enabled their extensive geographical distribution. Temperature is one of the key environmental variables that affect all aspects of plant life. Over the years, our knowledge of how plants perceive temperature and how they respond to heat stress has improved significantly. However, a comprehensive mechanistic understanding of the process still largely elusive. This review explores how an increase in the global surface temperature detrimentally affects plant survival and productivity and discusses current understanding of plant responses to high temperature (HT) and underlying mechanisms. We also highlighted potential resilience attributes that can be utilized to mitigate the impact of global warming.
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Affiliation(s)
- Pratyay Seth
- Indian Institute of Science Education and Research, Berhampur (IISER Berhampur), Engineering School Road, Berhampur, 760010, Odisha, India
| | - Jose Sebastian
- Indian Institute of Science Education and Research, Berhampur (IISER Berhampur), Engineering School Road, Berhampur, 760010, Odisha, India.
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20
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Vijayakumar S, Wang Y, Lehretz G, Taylor S, Carmo-Silva E, Long S. Kinetic modeling identifies targets for engineering improved photosynthetic efficiency in potato (Solanum tuberosum cv. Solara). THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 117:561-572. [PMID: 37921015 DOI: 10.1111/tpj.16512] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 10/02/2023] [Accepted: 10/11/2023] [Indexed: 11/04/2023]
Abstract
Potato (Solanum tuberosum) is a significant non-grain food crop in terms of global production. However, its yield potential might be raised by identifying means to release bottlenecks within photosynthetic metabolism, from the capture of solar energy to the synthesis of carbohydrates. Recently, engineered increases in photosynthetic rates in other crops have been directly related to increased yield - how might such increases be achieved in potato? To answer this question, we derived the photosynthetic parameters Vcmax and Jmax to calibrate a kinetic model of leaf metabolism (e-Photosynthesis) for potato. This model was then used to simulate the impact of manipulating the expression of genes and their protein products on carbon assimilation rates in silico through optimizing resource investment among 23 photosynthetic enzymes, predicting increases in photosynthetic CO2 uptake of up to 67%. However, this number of manipulations would not be practical with current technologies. Given a limited practical number of manipulations, the optimization indicated that an increase in amounts of three enzymes - Rubisco, FBP aldolase, and SBPase - would increase net assimilation. Increasing these alone to the levels predicted necessary for optimization increased photosynthetic rate by 28% in potato.
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Affiliation(s)
| | - Yu Wang
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
| | - Günter Lehretz
- Division of Biochemistry, Department of Biology, Friedrich-Alexander-University Erlangen-Nuremberg, Erlangen, Germany
| | - Samuel Taylor
- Lancaster Environment Centre, Lancaster University, Lancaster, LA1 4YW, UK
| | | | - Stephen Long
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
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21
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Stamford J, Kasznicki P, Lawson T. Spectral Reflectance Measurements. Methods Mol Biol 2024; 2790:333-353. [PMID: 38649579 DOI: 10.1007/978-1-0716-3790-6_17] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/25/2024]
Abstract
This chapter provides a methodology for evaluating plant health and leaf characteristics using spectral reflectance. It provides a step-by-step guide to using spectrometers for high-resolution point measurements of leaf spectral reflectance and multispectral imaging for capturing spatial data, emphasizing the importance of consistent measurement conditions. The chapter further explores the intricacies of multispectral imaging, including calibration, data collection, and image processing. Finally, this chapter delves into the application of various spectral indices for the quantification of key traits such as pigment content, the status of the xanthophyll cycle, water content, and how to identify spectral regions of interest for further research and development. Serving as a guide for researchers and practitioners in plant science, this chapter provides a straightforward framework for plant health assessment using spectral reflectance.
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Affiliation(s)
- John Stamford
- School of Life Sciences, University of Essex, Colchester, UK
| | - Piotr Kasznicki
- School of Life Sciences, University of Essex, Colchester, UK
| | - Tracy Lawson
- School of Life Sciences, University of Essex, Colchester, UK.
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22
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Skiba E, Pietrzak M, Michlewska S, Gruszka J, Malejko J, Godlewska-Żyłkiewicz B, Wolf WM. Photosynthesis governed by nanoparticulate titanium dioxide. The Pisum sativum L. case study. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 340:122735. [PMID: 37848082 DOI: 10.1016/j.envpol.2023.122735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Revised: 10/10/2023] [Accepted: 10/12/2023] [Indexed: 10/19/2023]
Abstract
Wide availability of anthropogenic TiO2 nanoparticles facilitates their penetration into environment and prompts interactions with plants. They alter plants growth and change their nutritional status. In particular, metabolic processes are affected. In this work the effect of nanometric TiO2 on photosynthesis efficiency in green pea (Pisum sativum L.) was studied. Hydroponic cultivations with three Ti levels (10; 50 and 100 mg L-1) were applied. At all concentrations nanoparticles penetrated into plant tissues and were detected by the single particle ICP-MS/MS method. Nanoparticles altered the CO2 assimilation rate and gas exchange parameters (i.e. transpiration, stomatal conductance, sub-stomatal CO2 concentration). The most pronounced effects were observed for Ti 50 mg L-1 cultivation where photosynthesis efficiency, transpiration and stomatal conductance were increased by 14.69%, 4.58% and 8.92%, respectively. They were further confirmed by high maximum ribulose 1,5-bisphosphate carboxylation rate (27.40% increase), maximum electron transport rate (21.51% increase) and the lowest CO2 compensation point (45.19% decrease). Furthermore, concentrations of Cu, Mn, Zn, Fe, Mg, Ca, K and P were examined with the most pronounced changes observed for elements directly involved in photosynthesis (Cu, Zn, Mn, and Fe). The Cu concentrations in roots, stems and leaves for Ti 50 mg L-1 cultivation were below the control by 33.15%, 38.28% and 10.76%, respectively. The Zn content in analogous treatment and organs decreased by 30.24%, 26.69% and 13.35%. The Mn and Fe levels in leaves were increased by 72.22% and 50.32%, respectively. Our results indicated that plant defence mechanisms which restrain the water uptake have been overcome in pea by photocatalytic activity of nanoparticulate TiO2 which stimulated photosynthesis. On the contrary to the substantial stomatal conductance, the transpiration has been reduced because exceptional part of water flow was already consumed in chloroplasts and could not have been freed to the atmosphere.
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Affiliation(s)
- Elżbieta Skiba
- Institute of General and Ecological Chemistry, Lodz University of Technology, Poland.
| | - Monika Pietrzak
- Institute of General and Ecological Chemistry, Lodz University of Technology, Poland
| | - Sylwia Michlewska
- Faculty of Biology and Environmental Protection, Laboratory of Microscopic Imaging and Specialized Biological Techniques, University of Lodz, Poland
| | - Jakub Gruszka
- Department of Analytical and Inorganic Chemistry, Faculty of Chemistry, University of Bialystok, Poland
| | - Julita Malejko
- Department of Analytical and Inorganic Chemistry, Faculty of Chemistry, University of Bialystok, Poland
| | | | - Wojciech M Wolf
- Institute of General and Ecological Chemistry, Lodz University of Technology, Poland
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23
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Xu X, Zhang X, Ni W, Liu C, Qin H, Guan Y, Liu J, Feng Z, Xing Y, Tian G, Zhu Z, Ge S, Jiang Y. Nitrogen-potassium balance improves leaf photosynthetic capacity by regulating leaf nitrogen allocation in apple. HORTICULTURE RESEARCH 2024; 11:uhad253. [PMID: 38486813 PMCID: PMC10939330 DOI: 10.1093/hr/uhad253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Accepted: 11/15/2023] [Indexed: 03/17/2024]
Abstract
Nitrogen (N) and potassium (K) are two important mineral nutrients in regulating leaf photosynthesis. However, the influence of N and K interaction on photosynthesis is still not fully understood. Using a hydroponics approach, we studied the effects of different N and K conditions on the physiological characteristics, N allocation and photosynthetic capacity of apple rootstock M9T337. The results showed that high N and low K conditions significantly reduced K content in roots and leaves, resulting in N/K imbalance, and allocated more N in leaves to non-photosynthetic N. Low K conditions increased biochemical limitation (BL), mesophyll limitation (MCL), and stomatal limitation (SL). By setting different N supplies, lowering N levels under low K conditions increased the proportion of water-soluble protein N (Nw) and sodium dodecyl sulfate-soluble proteins (Ns) by balancing N/K and increased the proportion of carboxylation N and electron transfer N. This increased the maximum carboxylation rate and mesophyll conductance, which reduced MCL and BL and alleviated the low K limitation of photosynthesis in apple rootstocks. In general, our results provide new insights into the regulation of photosynthetic capacity by N/K balance, which is conducive to the coordinated supply of N and K nutrients.
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Affiliation(s)
- Xinxiang Xu
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, Shandong, China
- Apple Technology Innovation Center of Shandong Province, Tai’an 271018, Shandong, China
- Yantai Academy of Agricultural Sciences, Institute of Pomology, Yan’tai 265500, Shandong, China
| | - Xu Zhang
- Yantai Academy of Agricultural Sciences, Institute of Pomology, Yan’tai 265500, Shandong, China
| | - Wei Ni
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, Shandong, China
- Apple Technology Innovation Center of Shandong Province, Tai’an 271018, Shandong, China
| | - Chunling Liu
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, Shandong, China
- Apple Technology Innovation Center of Shandong Province, Tai’an 271018, Shandong, China
| | - Hanhan Qin
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, Shandong, China
- Apple Technology Innovation Center of Shandong Province, Tai’an 271018, Shandong, China
| | - Yafei Guan
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, Shandong, China
- Apple Technology Innovation Center of Shandong Province, Tai’an 271018, Shandong, China
| | - Jingquan Liu
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, Shandong, China
- Apple Technology Innovation Center of Shandong Province, Tai’an 271018, Shandong, China
| | - Ziquan Feng
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, Shandong, China
- Apple Technology Innovation Center of Shandong Province, Tai’an 271018, Shandong, China
| | - Yue Xing
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, Shandong, China
- Apple Technology Innovation Center of Shandong Province, Tai’an 271018, Shandong, China
| | - Ge Tian
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, Shandong, China
- Apple Technology Innovation Center of Shandong Province, Tai’an 271018, Shandong, China
| | - Zhanling Zhu
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, Shandong, China
- Apple Technology Innovation Center of Shandong Province, Tai’an 271018, Shandong, China
| | - Shunfeng Ge
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, Shandong, China
- Apple Technology Innovation Center of Shandong Province, Tai’an 271018, Shandong, China
| | - Yuanmao Jiang
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, Shandong, China
- Apple Technology Innovation Center of Shandong Province, Tai’an 271018, Shandong, China
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24
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Kreiner JM, Hnatovska S, Stinchcombe JR, Wright SI. Quantifying the role of genome size and repeat content in adaptive variation and the architecture of flowering time in Amaranthus tuberculatus. PLoS Genet 2023; 19:e1010865. [PMID: 38150485 PMCID: PMC10775983 DOI: 10.1371/journal.pgen.1010865] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Revised: 01/09/2024] [Accepted: 12/11/2023] [Indexed: 12/29/2023] Open
Abstract
Genome size variation, largely driven by repeat content, is poorly understood within and among populations, limiting our understanding of its significance for adaptation. Here we characterize intraspecific variation in genome size and repeat content across 186 individuals of Amaranthus tuberculatus, a ubiquitous native weed that shows flowering time adaptation to climate across its range and in response to agriculture. Sequence-based genome size estimates vary by up to 20% across individuals, consistent with the considerable variability in the abundance of transposable elements, unknown repeats, and rDNAs across individuals. The additive effect of this variation has important phenotypic consequences-individuals with more repeats, and thus larger genomes, show slower flowering times and growth rates. However, compared to newly-characterized gene copy number and polygenic nucleotide changes underlying variation in flowering time, we show that genome size is a marginal contributor. Differences in flowering time are reflected by genome size variation across sexes and marginally, habitats, while polygenic variation and a gene copy number variant within the ATP synthesis pathway show consistently stronger environmental clines than genome size. Repeat content nonetheless shows non-neutral distributions across the genome, and across latitudinal and environmental gradients, demonstrating the numerous governing processes that in turn influence quantitative genetic variation for phenotypes key to plant adaptation.
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Affiliation(s)
- Julia M. Kreiner
- Department of Botany, Biodiversity Research Centre, University of British Columbia
- Department of Ecology & Evolutionary Biology, University of Toronto
| | - Solomiya Hnatovska
- Department of Ecology & Evolutionary Biology, University of Toronto
- Department of Molecular Genetics, University of Toronto
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25
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Tanwar N, Arya SS, Rookes JE, Cahill DM, Lenka SK, Bansal KC. Prospects of chloroplast metabolic engineering for developing nutrient-dense food crops. Crit Rev Biotechnol 2023; 43:1001-1018. [PMID: 35815847 DOI: 10.1080/07388551.2022.2092717] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Accepted: 05/29/2022] [Indexed: 11/03/2022]
Abstract
Addressing nutritional deficiencies in food crops through biofortification is a sustainable approach to tackling malnutrition. Biofortification is continuously being attempted through conventional breeding as well as through various plant biotechnological interventions, ranging from molecular breeding to genetic engineering and genome editing for enriching crops with various health-promoting metabolites. Genetic engineering is used for the rational incorporation of desired nutritional traits in food crops and predominantly operates through nuclear and chloroplast genome engineering. In the recent past, chloroplast engineering has been deployed as a strategic tool to develop model plants with enhanced nutritional traits due to the various advantages it offers over nuclear genome engineering. However, this approach needs to be extended for the nutritional enhancement of major food crops. Further, this platform could be combined with strategies, such as synthetic biology, chloroplast editing, nanoparticle-mediated rapid chloroplast transformation, and horizontal gene transfer through grafting for targeting endogenous metabolic pathways for overproducing native nutraceuticals, production of biopharmaceuticals, and biosynthesis of designer nutritional compounds. This review focuses on exploring various features of chloroplast genome engineering for nutritional enhancement of food crops by enhancing the levels of existing metabolites, restoring the metabolites lost during crop domestication, and introducing novel metabolites and phytonutrients needed for a healthy daily diet.
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Affiliation(s)
- Neha Tanwar
- TERI-Deakin Nano-Biotechnology Centre, The Energy Resources Institute (TERI), New Delhi, India
- School of Life and Environmental Sciences, Deakin University, Waurn Ponds Campus, Geelong, Australia
| | - Sagar S Arya
- School of Life and Environmental Sciences, Deakin University, Waurn Ponds Campus, Geelong, Australia
| | - James E Rookes
- School of Life and Environmental Sciences, Deakin University, Waurn Ponds Campus, Geelong, Australia
| | - David M Cahill
- School of Life and Environmental Sciences, Deakin University, Waurn Ponds Campus, Geelong, Australia
| | - Sangram K Lenka
- TERI-Deakin Nano-Biotechnology Centre, The Energy Resources Institute (TERI), New Delhi, India
- Gujarat Biotechnology University, Gujarat, India
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26
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Shang G, Meng Z, Qinyue Z, Feng X, Zhang W. Effects of exogenous zinc (ZnSO 4·7H 2O) on photosynthetic characteristics and grain quality of hybrid rice. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 205:108049. [PMID: 37948977 DOI: 10.1016/j.plaphy.2023.108049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Revised: 09/17/2023] [Accepted: 09/20/2023] [Indexed: 11/12/2023]
Abstract
Rice is an important food crop and zinc (Zn) is a beneficial microelement. However, there are few reports on the effect of zinc on yield and physiological characteristics of rice. In this study, exogenous zinc (ZnSO4·7H2O) was applied on plant to explore the effects of zinc on rice yield, quality and photosynthetic capacity. The results showed that appropriate concentration of zinc could increase the net photosynthetic rate (Pn) of rice leaves, and Zn2 (2 mg/L ZnSO4•7H2O) treatment was the most significant. However, the Zn treatment had no positive effect on rice yield except under the concentration of Zn2. Meanwhile, the result showed that Zn treatment could increase chalkiness degree (CD) and chalky grain rate (CGR), decreased amylose content (AC), increased protein content and changed protein composition of rice. The above indexes were most significant in Zn2 treatment. In addition, the Zn2 treatment significantly increased rapid viscosity analyzer (RVA) of rice. In conclusion, the results of this study suggested that Zn treatment could enhance the photosynthetic capacity of rice leaves, and improve the processing quality, taste quality and nutritional quality of rice. However, it will have a negative impact on the appearance quality of rice and cannot be used to increase rice production. This study will provide a basis for the application of zinc in rice production.
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Affiliation(s)
- Gao Shang
- College of Horticulture and Gardening, Yangtze University, Jingzhou, Hubei, China.
| | - Zhou Meng
- College of Horticulture and Gardening, Yangtze University, Jingzhou, Hubei, China.
| | - Zhou Qinyue
- Anhui Agricultural University, 230000, Hefei, PR China
| | - Xu Feng
- College of Horticulture and Gardening, Yangtze University, Jingzhou, Hubei, China.
| | - Weiwei Zhang
- College of Horticulture and Gardening, Yangtze University, Jingzhou, Hubei, China.
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27
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Okooboh GO, Haferkamp I, Rühle T, Leister D, Neuhaus HE. Expression of the plastocyanin gene PETE2 in Camelina sativa improves seed yield and salt tolerance. JOURNAL OF PLANT PHYSIOLOGY 2023; 290:154103. [PMID: 37788546 DOI: 10.1016/j.jplph.2023.154103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Revised: 09/15/2023] [Accepted: 09/25/2023] [Indexed: 10/05/2023]
Abstract
Plastocyanin functions as an electron carrier in the photosynthetic electron transport chain, located at the thylakoid membrane. In several species, endogenous plastocyanin levels are correlated with the photosynthetic electron transport rate. Overexpression of plastocyanin genes in Arabidopsis thaliana increases plant size, but this phenomenon has not been observed in crop species. Here, we investigated the effects of heterologous expression of a gene encoding a plastocyanin isoform from Arabidopsis, AtPETE2, in the oil seed crop Camelina sativa under standard growth conditions and under salt stress. AtPETE2 heterologous expression enhanced photosynthetic activity in Camelina, accelerating plant development and improving seed yield under standard growth conditions. Additionally, CsPETE2 from Camelina was induced by salt stress and AtPETE2 expression lines had larger primary roots and more lateral roots than the wild type. AtPETE2 expression lines also had larger seeds and higher total seed yield under long-term salt stress compared with non-transgenic Camelina. Our results demonstrate that increased plastocyanin levels in Camelina can enhance photosynthesis and productivity, as well as tolerance to osmotic and salt stresses. Heterologous expression of plastocyanin may be a useful strategy to mitigate crop stress in saline soils.
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Affiliation(s)
- Gloria O Okooboh
- Plant Physiology, University of Kaiserslautern, Erwin-Schrödinger-Str., D-67653, Kaiserslautern, Germany
| | - Ilka Haferkamp
- Plant Physiology, University of Kaiserslautern, Erwin-Schrödinger-Str., D-67653, Kaiserslautern, Germany
| | - Thilo Rühle
- Department of Biology I, Molecular Plant Biology, Ludwig-Maximilians University of Munich, D-82152, Planegg, Martinsried, Germany
| | - Dario Leister
- Department of Biology I, Molecular Plant Biology, Ludwig-Maximilians University of Munich, D-82152, Planegg, Martinsried, Germany
| | - H Ekkehard Neuhaus
- Plant Physiology, University of Kaiserslautern, Erwin-Schrödinger-Str., D-67653, Kaiserslautern, Germany.
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28
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Varghese R, Cherukuri AK, Doddrell NH, Doss CGP, Simkin AJ, Ramamoorthy S. Machine learning in photosynthesis: Prospects on sustainable crop development. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2023; 335:111795. [PMID: 37473784 DOI: 10.1016/j.plantsci.2023.111795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 07/10/2023] [Accepted: 07/13/2023] [Indexed: 07/22/2023]
Abstract
Improving photosynthesis is a promising avenue to increase food security. Studying photosynthetic traits with the aim to improve efficiency has been one of many strategies to increase crop yield but analyzing large data sets presents an ongoing challenge. Machine learning (ML) represents a ubiquitous tool that can provide a more elaborate data analysis. Here we review the application of ML in various domains of photosynthetic research, as well as in photosynthetic pigment studies. We highlight how correlating hyperspectral data with photosynthetic parameters to improve crop yield could be achieved through various ML algorithms. We also propose strategies to employ ML in promoting photosynthetic pigment research for furthering crop yield.
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Affiliation(s)
- Ressin Varghese
- School of Bio Sciences and Technology, VIT University, Vellore 632014, Tamil Nadu, India
| | - Aswani Kumar Cherukuri
- School of Information Technology and Engineering, VIT University, Vellore 632014, Tamil Nadu, India
| | | | - C George Priya Doss
- School of Bio Sciences and Technology, VIT University, Vellore 632014, Tamil Nadu, India
| | - Andrew J Simkin
- School of Biosciences, University of Kent, Canterbury CT2 7NJ, UK; School of Life Sciences, University of Essex, Wivenhoe Park, Colchester CO4 3SQ, UK
| | - Siva Ramamoorthy
- School of Bio Sciences and Technology, VIT University, Vellore 632014, Tamil Nadu, India.
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29
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Liu S, Zenda T, Tian Z, Huang Z. Metabolic pathways engineering for drought or/and heat tolerance in cereals. FRONTIERS IN PLANT SCIENCE 2023; 14:1111875. [PMID: 37810398 PMCID: PMC10557149 DOI: 10.3389/fpls.2023.1111875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Accepted: 09/04/2023] [Indexed: 10/10/2023]
Abstract
Drought (D) and heat (H) are the two major abiotic stresses hindering cereal crop growth and productivity, either singly or in combination (D/+H), by imposing various negative impacts on plant physiological and biochemical processes. Consequently, this decreases overall cereal crop production and impacts global food availability and human nutrition. To achieve global food and nutrition security vis-a-vis global climate change, deployment of new strategies for enhancing crop D/+H stress tolerance and higher nutritive value in cereals is imperative. This depends on first gaining a mechanistic understanding of the mechanisms underlying D/+H stress response. Meanwhile, functional genomics has revealed several stress-related genes that have been successfully used in target-gene approach to generate stress-tolerant cultivars and sustain crop productivity over the past decades. However, the fast-changing climate, coupled with the complexity and multigenic nature of D/+H tolerance suggest that single-gene/trait targeting may not suffice in improving such traits. Hence, in this review-cum-perspective, we advance that targeted multiple-gene or metabolic pathway manipulation could represent the most effective approach for improving D/+H stress tolerance. First, we highlight the impact of D/+H stress on cereal crops, and the elaborate plant physiological and molecular responses. We then discuss how key primary metabolism- and secondary metabolism-related metabolic pathways, including carbon metabolism, starch metabolism, phenylpropanoid biosynthesis, γ-aminobutyric acid (GABA) biosynthesis, and phytohormone biosynthesis and signaling can be modified using modern molecular biotechnology approaches such as CRISPR-Cas9 system and synthetic biology (Synbio) to enhance D/+H tolerance in cereal crops. Understandably, several bottlenecks hinder metabolic pathway modification, including those related to feedback regulation, gene functional annotation, complex crosstalk between pathways, and metabolomics data and spatiotemporal gene expressions analyses. Nonetheless, recent advances in molecular biotechnology, genome-editing, single-cell metabolomics, and data annotation and analysis approaches, when integrated, offer unprecedented opportunities for pathway engineering for enhancing crop D/+H stress tolerance and improved yield. Especially, Synbio-based strategies will accelerate the development of climate resilient and nutrient-dense cereals, critical for achieving global food security and combating malnutrition.
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Affiliation(s)
- Songtao Liu
- Hebei Key Laboratory of Quality & Safety Analysis-Testing for Agro-Products and Food, Hebei North University, Zhangjiakou, China
| | - Tinashe Zenda
- State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding, China
| | - Zaimin Tian
- Hebei Key Laboratory of Quality & Safety Analysis-Testing for Agro-Products and Food, Hebei North University, Zhangjiakou, China
| | - Zhihong Huang
- Hebei Key Laboratory of Quality & Safety Analysis-Testing for Agro-Products and Food, Hebei North University, Zhangjiakou, China
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30
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Salazar-Gutiérrez MR, Lawrence K, Coneva ED, Chaves-Córdoba B. Photosynthetic Response of Blueberries Grown in Containers. PLANTS (BASEL, SWITZERLAND) 2023; 12:3272. [PMID: 37765438 PMCID: PMC10537620 DOI: 10.3390/plants12183272] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 09/12/2023] [Accepted: 09/13/2023] [Indexed: 09/29/2023]
Abstract
Recently, there has been increased interest in container blueberry production as a viable alternative to open-field blueberry planting. Container production of blueberries offers numerous advantages, among these, a lack of limitation by suboptimal soil conditions in the open field and the ability to control substrate pH, drainage, and organic matter. The photosynthetic response for three container-grown Southern highbush blueberry (interspecific Vaccinium hybrids) cultivars including 'Jewel', 'Meadowlark', and 'Victoria' and a rabbiteye blueberry (Vaccinium virgatum) 'Baldwin', were measured during the spring and summer of 2022. It was hypothesized that the three cultivars evaluated would have different photosynthetic responses. The objective of this study was to determine the photosynthetic activity of different blueberry cultivars during the first year of crop establishment. A series of measurements were conducted every 2 h throughout the day and for different dates using a gas exchange data analyzer on newly matured fully expanded leaves located in the top middle section of the canopy for each cultivar. The response curves showed that net photosynthesis (A) became saturated at moderate light, with saturation occurring at a photosynthetic photon flux density (PPFD) of 1932 µmol m-2 s-1. At this point, the rate of CO2 assimilation was approximately 16.84 µmol CO2 m-2 s-1. No differences in (A) were found among cultivars. Overall, the attained values of photosynthesis provide a strong conceptual basis for understanding the cultivar variation response when grown in containers; therefore, the containerized system may serve as a production system for early fruiting blueberries in Alabama, USA.
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Affiliation(s)
| | - Kathy Lawrence
- Department of Entomology and Plant Pathology, Auburn University, Auburn, AL 36849, USA
| | - Elina D Coneva
- Department of Horticulture, Auburn University, Auburn, AL 36849, USA
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31
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Li D, Dong H, Cao X, Wang W, Li C. Enhancing photosynthetic CO 2 fixation by assembling metal-organic frameworks on Chlorella pyrenoidosa. Nat Commun 2023; 14:5337. [PMID: 37660048 PMCID: PMC10475011 DOI: 10.1038/s41467-023-40839-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Accepted: 08/12/2023] [Indexed: 09/04/2023] Open
Abstract
The CO2 concentration at ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) is crucial to improve photosynthetic efficiency for biomass yield. However, how to concentrate and transport atmospheric CO2 towards the Rubisco carboxylation is a big challenge. Herein, we report the self-assembly of metal-organic frameworks (MOFs) on the surface of the green alga Chlorella pyrenoidosa that can greatly enhance the photosynthetic carbon fixation. The chemical CO2 concentrating approach improves the apparent photo conversion efficiency to about 1.9 folds, which is up to 9.8% in ambient air from an intrinsic 5.1%. We find that the efficient carbon fixation lies in the conversion of the captured CO2 to the transportable HCO3- species at bio-organic interface. This work demonstrates a chemical approach of concentrating atmospheric CO2 for enhancing biomass yield of photosynthesis.
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Affiliation(s)
- Dingyi Li
- School of Materials Science and Engineering, National Institute for Advanced Materials, Nankai University, Tianjin, China
| | - Hong Dong
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian National Laboratory for Clean Energy, Dalian, China
| | - Xupeng Cao
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian National Laboratory for Clean Energy, Dalian, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Wangyin Wang
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian National Laboratory for Clean Energy, Dalian, China.
| | - Can Li
- School of Materials Science and Engineering, National Institute for Advanced Materials, Nankai University, Tianjin, China.
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian National Laboratory for Clean Energy, Dalian, China.
- University of Chinese Academy of Sciences, Beijing, China.
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32
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Głowacka K, Kromdijk J, Salesse-Smith CE, Smith C, Driever SM, Long SP. Is chloroplast size optimal for photosynthetic efficiency? THE NEW PHYTOLOGIST 2023; 239:2197-2211. [PMID: 37357337 DOI: 10.1111/nph.19091] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2023] [Accepted: 06/04/2023] [Indexed: 06/27/2023]
Abstract
Improving photosynthetic efficiency has recently emerged as a promising way to increase crop production in a sustainable manner. While chloroplast size may affect photosynthetic efficiency in several ways, we aimed to explore whether chloroplast size manipulation can be a viable approach to improving photosynthetic performance. Several tobacco (Nicotiana tabacum) lines with contrasting chloroplast sizes were generated via manipulation of chloroplast division genes to assess photosynthetic performance under steady-state and fluctuating light. A selection of lines was included in a field trial to explore productivity. Lines with enlarged chloroplasts underperformed in most of the measured traits. Lines with smaller and more numerous chloroplasts showed a similar efficiency compared with wild-type (WT) tobacco. Chloroplast size only weakly affected light absorptance and light profiles within the leaf. Increasing chloroplast size decreased mesophyll conductance (gm ) but decreased chloroplast size did not increase gm . Increasing chloroplast size reduced chloroplast movements and enhanced non-photochemical quenching. The chloroplast smaller than WT appeared to be no better than WT for photosynthetic efficiency and productivity under field conditions. The results indicate that chloroplast size manipulations are therefore unlikely to lead to higher photosynthetic efficiency or growth.
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Affiliation(s)
- Katarzyna Głowacka
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, 1206 West Gregory Drive, Urbana, IL, 61801, USA
- Department of Biochemistry and Center for Plant Science Innovation, University of Nebraska-Lincoln, 1901 Vine Street, Lincoln, NE, 68588, USA
- Institute of Plant Genetics, Polish Academy of Sciences, Strzeszynska 34, Poznań, 60-479, Poland
| | - Johannes Kromdijk
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, 1206 West Gregory Drive, Urbana, IL, 61801, USA
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, UK
| | - Coralie E Salesse-Smith
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, 1206 West Gregory Drive, Urbana, IL, 61801, USA
| | - Cailin Smith
- Department of Biochemistry and Center for Plant Science Innovation, University of Nebraska-Lincoln, 1901 Vine Street, Lincoln, NE, 68588, USA
- Goshen College, 1700 South Main Street, Goshen, IN, 46526, USA
| | - Steven M Driever
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, 1206 West Gregory Drive, Urbana, IL, 61801, USA
- Centre for Crop Systems Analysis, Wageningen University, Bornsesteeg 48, Wageningen, 6708PE, the Netherlands
| | - Stephen P Long
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, 1206 West Gregory Drive, Urbana, IL, 61801, USA
- Departments of Plant Biology and of Crop Sciences, University of Illinois, 505 South Goodwin Avenue, Urbana, IL, 61801, USA
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Boisset ND, Favoino G, Meloni M, Jomat L, Cassier-Chauvat C, Zaffagnini M, Lemaire SD, Crozet P. Phosphoribulokinase abundance is not limiting the Calvin-Benson-Bassham cycle in Chlamydomonas reinhardtii. FRONTIERS IN PLANT SCIENCE 2023; 14:1230723. [PMID: 37719215 PMCID: PMC10501310 DOI: 10.3389/fpls.2023.1230723] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/29/2023] [Accepted: 07/21/2023] [Indexed: 09/19/2023]
Abstract
Improving photosynthetic efficiency in plants and microalgae is of utmost importance to support the growing world population and to enable the bioproduction of energy and chemicals. Limitations in photosynthetic light conversion efficiency can be directly attributed to kinetic bottlenecks within the Calvin-Benson-Bassham cycle (CBBC) responsible for carbon fixation. A better understanding of these bottlenecks in vivo is crucial to overcome these limiting factors through bio-engineering. The present study is focused on the analysis of phosphoribulokinase (PRK) in the unicellular green alga Chlamydomonas reinhardtii. We have characterized a PRK knock-out mutant strain and showed that in the absence of PRK, Chlamydomonas cannot grow photoautotrophically while functional complementation with a synthetic construct allowed restoration of photoautotrophy. Nevertheless, using standard genetic elements, the expression of PRK was limited to 40% of the reference level in complemented strains and could not restore normal growth in photoautotrophic conditions suggesting that the CBBC is limited. We were subsequently able to overcome this initial limitation by improving the design of the transcriptional unit expressing PRK using diverse combinations of DNA parts including PRK endogenous promoter and introns. This enabled us to obtain strains with PRK levels comparable to the reference strain and even overexpressing strains. A collection of strains with PRK levels between 16% and 250% of WT PRK levels was generated and characterized. Immunoblot and growth assays revealed that a PRK content of ≈86% is sufficient to fully restore photoautotrophic growth. This result suggests that PRK is present in moderate excess in Chlamydomonas. Consistently, the overexpression of PRK did not increase photosynthetic growth indicating that that the endogenous level of PRK in Chlamydomonas is not limiting the Calvin-Benson-Bassham cycle under optimal conditions.
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Affiliation(s)
- Nicolas D. Boisset
- Laboratoire de Biologie Computationnelle et Quantitative, Institut de Biologie Parie-Seine, Sorbonne Université, CNRS, UMR 7238, Paris, France
- Laboratoire de Biologie Moléculaire et Cellulaire des Eucaryotes, Institut de Biologie Physico-Chimique, Sorbonne Université, CNRS, UMR 8226, Paris, France
- Doctoral School of Plant Sciences, Université Paris-Saclay, Saint-Aubin, France
| | - Giusi Favoino
- Laboratoire de Biologie Computationnelle et Quantitative, Institut de Biologie Parie-Seine, Sorbonne Université, CNRS, UMR 7238, Paris, France
| | - Maria Meloni
- Department of Pharmacy and Biotechnologies, University of Bologna, Bologna, Italy
| | - Lucile Jomat
- Laboratoire de Biologie Computationnelle et Quantitative, Institut de Biologie Parie-Seine, Sorbonne Université, CNRS, UMR 7238, Paris, France
| | - Corinne Cassier-Chauvat
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), UMR 9198, Gif-sur-Yvette, France
| | - Mirko Zaffagnini
- Department of Pharmacy and Biotechnologies, University of Bologna, Bologna, Italy
| | - Stéphane D. Lemaire
- Laboratoire de Biologie Computationnelle et Quantitative, Institut de Biologie Parie-Seine, Sorbonne Université, CNRS, UMR 7238, Paris, France
- Laboratoire de Biologie Moléculaire et Cellulaire des Eucaryotes, Institut de Biologie Physico-Chimique, Sorbonne Université, CNRS, UMR 8226, Paris, France
| | - Pierre Crozet
- Laboratoire de Biologie Computationnelle et Quantitative, Institut de Biologie Parie-Seine, Sorbonne Université, CNRS, UMR 7238, Paris, France
- Laboratoire de Biologie Moléculaire et Cellulaire des Eucaryotes, Institut de Biologie Physico-Chimique, Sorbonne Université, CNRS, UMR 8226, Paris, France
- Polytech-Sorbonne, Sorbonne Université, Paris, France
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Jahed KR, Saini AK, Sherif SM. Coping with the cold: unveiling cryoprotectants, molecular signaling pathways, and strategies for cold stress resilience. FRONTIERS IN PLANT SCIENCE 2023; 14:1246093. [PMID: 37649996 PMCID: PMC10465183 DOI: 10.3389/fpls.2023.1246093] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2023] [Accepted: 07/31/2023] [Indexed: 09/01/2023]
Abstract
Low temperature stress significantly threatens crop productivity and economic sustainability. Plants counter this by deploying advanced molecular mechanisms to perceive and respond to cold stress. Transmembrane proteins initiate these responses, triggering a series of events involving secondary messengers such as calcium ions (Ca2+), reactive oxygen species (ROS), and inositol phosphates. Of these, calcium signaling is paramount, activating downstream phosphorylation cascades and the transcription of cold-responsive genes, including cold-regulated (COR) genes. This review focuses on how plants manage freeze-induced damage through dual strategies: cold tolerance and cold avoidance. Tolerance mechanisms involve acclimatization to decreasing temperatures, fostering gradual accumulation of cold resistance. In contrast, avoidance mechanisms rely on cryoprotectant molecules like potassium ions (K+), proline, glycerol, and antifreeze proteins (AFPs). Cryoprotectants modulate intracellular solute concentration, lower the freezing point, inhibit ice formation, and preserve plasma membrane fluidity. Additionally, these molecules demonstrate antioxidant activity, scavenging ROS, preventing protein denaturation, and subsequently mitigating cellular damage. By forming extensive hydrogen bonds with water molecules, cryoprotectants also limit intercellular water movement, minimizing extracellular ice crystal formation, and cell dehydration. The deployment of cryoprotectants is a key adaptive strategy that bolsters plant resilience to cold stress and promotes survival in freezing environments. However, the specific physiological and molecular mechanisms underlying these protective effects remain insufficiently understood. Therefore, this review underscores the need for further research to elucidate these mechanisms and assess their potential impact on crop productivity and sustainability, contributing to the progressive discourse in plant biology and environmental science.
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Affiliation(s)
| | | | - Sherif M. Sherif
- Alson H. Smith Jr. Agricultural Research and Extension Center, School of Plant and Environmental Sciences, Virginia Tech, Winchester, VA, United States
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35
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Simkin AJ, Alqurashi M, Lopez-Calcagno PE, Headland LR, Raines CA. Glyceraldehyde-3-phosphate dehydrogenase subunits A and B are essential to maintain photosynthetic efficiency. PLANT PHYSIOLOGY 2023; 192:2989-3000. [PMID: 37099455 PMCID: PMC11025378 DOI: 10.1093/plphys/kiad256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Revised: 03/16/2023] [Accepted: 03/30/2023] [Indexed: 06/19/2023]
Abstract
In plants, glyceraldehyde-3-phosphate dehydrogenase (GAPDH; EC 1.2.1.12) reversibly converts 1,3-bisphosphoglycerate to glyceraldehyde-3-phosphate coupled with the reduction of NADPH to NADP+. The GAPDH enzyme that functions in the Calvin-Benson cycle is assembled either from 4 glyceraldehyde-3-phosphate dehydrogenase A (GAPA) subunit proteins forming a homotetramer (A4) or from 2 GAPA and 2 glyceraldehyde-3-phosphate dehydrogenase B (GAPB) subunit proteins forming a heterotetramer (A2B2). The relative importance of these 2 forms of GAPDH in determining the rate of photosynthesis is unknown. To address this question, we measured the photosynthetic rates of Arabidopsis (Arabidopsis thaliana) plants containing reduced amounts of the GAPDH A and B subunits individually and jointly, using T-DNA insertion lines of GAPA and GAPB and transgenic GAPA and GAPB plants with reduced levels of these proteins. Here, we show that decreasing the levels of either the A or B subunits decreased the maximum efficiency of CO2 fixation, plant growth, and final biomass. Finally, these data showed that the reduction in GAPA protein to 9% wild-type levels resulted in a 73% decrease in carbon assimilation rates. In contrast, eliminating GAPB protein resulted in a 40% reduction in assimilation rates. This work demonstrates that the GAPA homotetramer can compensate for the loss of GAPB, whereas GAPB alone cannot compensate fully for the loss of the GAPA subunit.
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Affiliation(s)
- Andrew J Simkin
- School of Biosciences, University of Kent, Canterbury CT2 7NJ, UK
- Department of Biological Sciences, University of Essex, Colchester CO4 3SQ, UK
| | - Mohammed Alqurashi
- Department of Biological Sciences, University of Essex, Colchester CO4 3SQ, UK
| | - Patricia E Lopez-Calcagno
- Department of Biological Sciences, University of Essex, Colchester CO4 3SQ, UK
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne NE1 7RU, UK
| | - Lauren R Headland
- Department of Biological Sciences, University of Essex, Colchester CO4 3SQ, UK
- School of Molecular Biosciences, University of Glasgow, Glasgow G12 8QQ, UK
| | - Christine A Raines
- Department of Biological Sciences, University of Essex, Colchester CO4 3SQ, UK
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Song Q, Liu F, Bu H, Zhu XG. Quantifying Contributions of Different Factors to Canopy Photosynthesis in 2 Maize Varieties: Development of a Novel 3D Canopy Modeling Pipeline. PLANT PHENOMICS (WASHINGTON, D.C.) 2023; 5:0075. [PMID: 37502446 PMCID: PMC10371248 DOI: 10.34133/plantphenomics.0075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/15/2023] [Accepted: 07/01/2023] [Indexed: 07/29/2023]
Abstract
Crop yield potential is intrinsically related to canopy photosynthesis; therefore, improving canopy photosynthetic efficiency is a major focus of current efforts to enhance crop yield. Canopy photosynthesis rate (Ac) is influenced by several factors, including plant architecture, leaf chlorophyll content, and leaf photosynthetic properties, which interact with each other. Identifying factors that restrict canopy photosynthesis and target adjustments to improve canopy photosynthesis in a specific crop cultivar pose an important challenge for the breeding community. To address this challenge, we developed a novel pipeline that utilizes factorial analysis, canopy photosynthesis modeling, and phenomics data collected using a 64-camera multi-view stereo system, enabling the dissection of the contributions of different factors to differences in canopy photosynthesis between maize cultivars. We applied this method to 2 maize varieties, W64A and A619, and found that leaf photosynthetic efficiency is the primary determinant (17.5% to 29.2%) of the difference in Ac between 2 maize varieties at all stages, and plant architecture at early stages also contribute to the difference in Ac (5.3% to 6.7%). Additionally, the contributions of each leaf photosynthetic parameter and plant architectural trait were dissected. We also found that the leaf photosynthetic parameters were linearly correlated with Ac and plant architecture traits were non-linearly related to Ac. This study developed a novel pipeline that provides a method for dissecting the relationship among individual phenotypes controlling the complex trait of canopy photosynthesis.
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Affiliation(s)
- Qingfeng Song
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Fusang Liu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Hongyi Bu
- Shanghai Institute of Technical Physics, Chinese Academy of Sciences, Shanghai, China
| | - Xin-Guang Zhu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
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Su Y, Peng S, Xu G, Gao Q, Chen J, Lu X, Duan B. Effect of cornstalk biochar on phytoremediation of Pb-contaminated soil by females and males of Populus deltoides (Salicaceae). PHYSIOLOGIA PLANTARUM 2023; 175:e13986. [PMID: 37615999 DOI: 10.1111/ppl.13986] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Revised: 07/14/2023] [Accepted: 07/24/2023] [Indexed: 08/25/2023]
Abstract
Soil pollution with lead (Pb) has become a serious global concern, adversely affecting the forest ecosystem. This study was conducted to investigate the effects of corn straw on the remediation efficiency of Pb-contaminated soil using Populus deltoides. Female and male P. deltoides cuttings were subjected to soil spiked with 900 mg kg-1 Pb and amended with 5% (v/v) corn straw biochar for 90 days. Under Pb stress, the addition of biochar significantly increased the total biomass accumulation by 29% in females and 26% in males. However, without the addition of biochar, the biomass accumulation was significantly reduced by 11% in females and 3% in males under Pb stress. Females showed a higher uptake and accumulation of Pb in roots and leaves, while males accumulated more Pb in roots and stems and exhibited an increased anti-oxidative capacity. Biochar addition alleviated Pb toxicity in both male and female P. deltoides by immobilizing Pb ion in the soil, reducing Pb uptake and translocation, promoting nutrient uptake, and improving the diversity and stability of the soil bacteria community. Under Pb stress, the relative abundances of metal-resistance bacteria significantly increased, such as the abundance of Bacteroidetes in females and the abundances of Actinobacteria, Firmicutes, and Planctomycetes in males. In brief, the males under biochar addition exhibited promising potential as candidates for phytoremediation of Pb-contaminated soil. This study provides new insights into mechanisms underlying sexually differential responses to Pb stress in the presence of biochar amendment.
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Affiliation(s)
- Yan Su
- Key Laboratory of Mountain Surface Processes and Ecological Regulation, Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Shuming Peng
- State Environmental Protection Key Laboratory of Synergetic Control and Joint Remediation for Soil & Water Pollution, College of Environment and Ecology, Chengdu University of Technology, Chengdu, Sichuan, China
| | - Gang Xu
- School of Life Sciences and Engineering, Southwest University of Science and Technology, Mianyang, China
| | - Qiao Gao
- Key Laboratory of Mountain Surface Processes and Ecological Regulation, Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Juan Chen
- Engineering Research Center of Chuanxibei RHS Construction at Mianyang Teachers' College of Sichuan Province, Mianyang Teachers' College, Mianyang, China
| | - Xuyang Lu
- Key Laboratory of Mountain Surface Processes and Ecological Regulation, Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, China
| | - Baoli Duan
- Key Laboratory of Mountain Surface Processes and Ecological Regulation, Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, China
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Garrido A, Conde A, Serôdio J, De Vos RCH, Cunha A. Fruit Photosynthesis: More to Know about Where, How and Why. PLANTS (BASEL, SWITZERLAND) 2023; 12:2393. [PMID: 37446953 DOI: 10.3390/plants12132393] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 06/13/2023] [Accepted: 06/15/2023] [Indexed: 07/15/2023]
Abstract
Not only leaves but also other plant organs and structures typically considered as carbon sinks, including stems, roots, flowers, fruits and seeds, may exhibit photosynthetic activity. There is still a lack of a coherent and systematized body of knowledge and consensus on the role(s) of photosynthesis in these "sink" organs. With regard to fruits, their actual photosynthetic activity is influenced by a range of properties, including fruit anatomy, histology, physiology, development and the surrounding microclimate. At early stages of development fruits generally contain high levels of chlorophylls, a high density of functional stomata and thin cuticles. While some plant species retain functional chloroplasts in their fruits upon subsequent development or ripening, most species undergo a disintegration of the fruit chloroplast grana and reduction in stomata functionality, thus limiting gas exchange. In addition, the increase in fruit volume hinders light penetration and access to CO2, also reducing photosynthetic activity. This review aimed to compile information on aspects related to fruit photosynthesis, from fruit characteristics to ecological drivers, and to address the following challenging biological questions: why does a fruit show photosynthetic activity and what could be its functions? Overall, there is a body of evidence to support the hypothesis that photosynthesis in fruits is key to locally providing: ATP and NADPH, which are both fundamental for several demanding biosynthetic pathways (e.g., synthesis of fatty acids); O2, to prevent hypoxia in its inner tissues including seeds; and carbon skeletons, which can fuel the biosynthesis of primary and secondary metabolites important for the growth of fruits and for spreading, survival and germination of their seed (e.g., sugars, flavonoids, tannins, lipids). At the same time, both primary and secondary metabolites present in fruits and seeds are key to human life, for instance as sources for nutrition, bioactives, oils and other economically important compounds or components. Understanding the functions of photosynthesis in fruits is pivotal to crop management, providing a rationale for manipulating microenvironmental conditions and the expression of key photosynthetic genes, which may help growers or breeders to optimize development, composition, yield or other economically important fruit quality aspects.
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Affiliation(s)
- Andreia Garrido
- Centre of Molecular and Environmental Biology (CBMA), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal
| | - Artur Conde
- Centre of Molecular and Environmental Biology (CBMA), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal
| | - João Serôdio
- Centre for Environmental and Marine Studies (CESAM), Department of Biology, University of Aveiro, Campus de Santiago, 3810-193 Aveiro, Portugal
| | - Ric C H De Vos
- Business Unit Bioscience, Wageningen Plant Research, Wageningen University and Research Centre (Wageningen-UR), P.O. Box 16, 6700 AA Wageningen, The Netherlands
| | - Ana Cunha
- Centre of Molecular and Environmental Biology (CBMA), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal
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Tian H, Sun H, Zhu L, Zhang K, Zhang Y, Zhang H, Zhu J, Liu X, Bai Z, Li A, Tian L, Liu L, Li C. Response of in situ root phenotypes to potassium stress in cotton. PeerJ 2023; 11:e15587. [PMID: 37361035 PMCID: PMC10290453 DOI: 10.7717/peerj.15587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Accepted: 05/26/2023] [Indexed: 06/28/2023] Open
Abstract
Potassium plays a significant role in the basic functions of plant growth and development. Potassium uptake is closely associated with morphological characteristics of the roots. However, the dynamic characteristics of phenotype and lifespan of cotton (Gossypium hirsutum L.) lateral roots and root hairs under low and high potassium stress remain unclear. In this study, potassium stress experiments (low and high potassium, medium potassium as control) were conducted using RhizoPot (an in situ root observation device) to determine the response characteristics of lateral roots and root hairs in cotton under potassium stress. The plant morphology, photosynthetic characteristics, root phenotypic changes, and lifespan of lateral roots and root hairs were measured. Potassium accumulation, aboveground phenotype, photosynthetic capacity, root length density, root dry weight, root diameter, lateral root lifespan, and root hair lifespan under low potassium stress were significantly decreased compared to medium potassium treatment. However, the root hair length of the former was significantly increased than that of the latter. Potassium accumulation and the lateral root lifespan were significantly increased under high potassium treatment, while root length density, root dry weight, root diameter, root hair length, and root hair lifespan were significantly decreased compared to the medium potassium treatment. Notably, there were no significant differences in aboveground morphology and photosynthetic characters. Principal component analysis revealed that lateral root lifespan, root hair lifespan of the first lateral root, and root hair length significantly correlated with potassium accumulation. The root had similar regularity responses to low and high potassium stress except for lifespan and root hair length. The findings of this study enhance the understanding of the phenotype and lifespan of cotton's lateral roots and root hairs under low and high potassium stress.
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Affiliation(s)
- Heyang Tian
- State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs/Key Laboratory of Crop Growth Regulation of Hebei Province/College of Agronomy, Hebei Agricultural University, Baoding, Hebei, China
| | - Hongchun Sun
- State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs/Key Laboratory of Crop Growth Regulation of Hebei Province/College of Agronomy, Hebei Agricultural University, Baoding, Hebei, China
| | - Lingxiao Zhu
- State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs/Key Laboratory of Crop Growth Regulation of Hebei Province/College of Agronomy, Hebei Agricultural University, Baoding, Hebei, China
| | - Ke Zhang
- State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs/Key Laboratory of Crop Growth Regulation of Hebei Province/College of Agronomy, Hebei Agricultural University, Baoding, Hebei, China
| | - Yongjiang Zhang
- State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs/Key Laboratory of Crop Growth Regulation of Hebei Province/College of Agronomy, Hebei Agricultural University, Baoding, Hebei, China
| | - Haina Zhang
- Cotton Research Institute, Hebei Academy of Agriculture and Forestry Sciences/Key Laboratory of Cotton Biology and Genetic Breeding in Huanghuaihai Semi-Arid Region, Ministry of Agriculture /Hebei Branch of National Cotton Improvement Center, Shijiazhuang, Hebei, China
| | - Jijie Zhu
- Institute of Cereal and Oil Crops, Hebei Academy of Agriculture and Forestry Sciences, Shijiazhuang, Hebei, China
| | - Xiaoqing Liu
- State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs/Key Laboratory of Crop Growth Regulation of Hebei Province/College of Agronomy, Hebei Agricultural University, Baoding, Hebei, China
| | - Zhiying Bai
- State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs/Key Laboratory of Crop Growth Regulation of Hebei Province/College of Agronomy, Hebei Agricultural University, Baoding, Hebei, China
| | - Anchang Li
- State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs/Key Laboratory of Crop Growth Regulation of Hebei Province/College of Agronomy, Hebei Agricultural University, Baoding, Hebei, China
| | - Liwen Tian
- Institute of Industrial Crops, Xinjiang Academy of Agricultural Sciences, Urumqi, Xinjiang, China
| | - Liantao Liu
- State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs/Key Laboratory of Crop Growth Regulation of Hebei Province/College of Agronomy, Hebei Agricultural University, Baoding, Hebei, China
| | - Cundong Li
- State Key Laboratory of North China Crop Improvement and Regulation/ Key Laboratory of North China Water-saving Agriculture, Ministry of Agriculture and Rural Affairs/Key Laboratory of Crop Growth Regulation of Hebei Province/College of Agronomy, Hebei Agricultural University, Baoding, Hebei, China
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Guo S, Mu L, Sun S, Hou X, Yao M, Hu X. Concurrence of microplastics and heat waves reduces rice yields and disturbs the agroecosystem nitrogen cycle. JOURNAL OF HAZARDOUS MATERIALS 2023; 452:131340. [PMID: 37027913 DOI: 10.1016/j.jhazmat.2023.131340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2023] [Revised: 03/23/2023] [Accepted: 03/31/2023] [Indexed: 05/03/2023]
Abstract
Microplastic pollution and heat waves, as damaging aspects of human activities, have been found to affect crop production and nitrogen (N) cycling in agroecosystems. However, the impacts of the combination of heat waves and microplastics on crop production and quality have not been analyzed. We found that heat waves or microplastics alone had slight effects on rice physiological parameters and soil microbial communities. However, under heat wave conditions, the typical low-density polyethylene (LDPE) and polylactic acid (PLA) microplastics decreased the rice yields by 32.1% and 32.9%, decreased the grain protein level by 4.5% and 2.8%, and decreased the lysine level by 91.1% and 63.6%, respectively. In the presence of heat waves, microplastics increased the allocation and assimilation of N in roots and stems but decreased those in leaves, which resulted in a reduction in photosynthesis. In soil, the concurrence of microplastics and heat waves induced the leaching of microplastics, which resulted in decreased microbial N functionality and disturbed N metabolism. In summary, heat waves amplified the disturbance induced by microplastics on the agroecosystem N cycle and therefore exacerbated the decreases in rice yield and nutrients induced by microplastics, which indicates that the environmental and food risks of microplastics deserve to be reconsidered.
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Affiliation(s)
- Shuqing Guo
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education)/Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, China; Key Laboratory for Environmental Factors Control of Agro-Product Quality Safety (Ministry of Agriculture and Rural Affairs), Tianjin Key Laboratory of Agro-Environment and Safe-Product, Institute of Agro-Environmental Protection, Ministry of Agriculture and Rural Affairs, 300191 Tianjin, China
| | - Li Mu
- Key Laboratory for Environmental Factors Control of Agro-Product Quality Safety (Ministry of Agriculture and Rural Affairs), Tianjin Key Laboratory of Agro-Environment and Safe-Product, Institute of Agro-Environmental Protection, Ministry of Agriculture and Rural Affairs, 300191 Tianjin, China.
| | - Shan Sun
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education)/Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, China
| | - Xuan Hou
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education)/Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, China
| | - Mingqi Yao
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education)/Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, China
| | - Xiangang Hu
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education)/Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, China
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41
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Zhou Y, Gunn LH, Birch R, Andersson I, Whitney SM. Grafting Rhodobacter sphaeroides with red algae Rubisco to accelerate catalysis and plant growth. NATURE PLANTS 2023; 9:978-986. [PMID: 37291398 DOI: 10.1038/s41477-023-01436-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2022] [Accepted: 05/10/2023] [Indexed: 06/10/2023]
Abstract
Improving the carboxylation properties of Rubisco has primarily arisen from unforeseen amino acid substitutions remote from the catalytic site. The unpredictability has frustrated rational design efforts to enhance plant Rubisco towards the prized growth-enhancing carboxylation properties of red algae Griffithsia monilis GmRubisco. To address this, we determined the crystal structure of GmRubisco to 1.7 Å. Three structurally divergent domains were identified relative to the red-type bacterial Rhodobacter sphaeroides RsRubisco that, unlike GmRubisco, are expressed in Escherichia coli and plants. Kinetic comparison of 11 RsRubisco chimaeras revealed that incorporating C329A and A332V substitutions from GmRubisco Loop 6 (corresponding to plant residues 328 and 331) into RsRubisco increased the carboxylation rate (kcatc) by 60%, the carboxylation efficiency in air by 22% and the CO2/O2 specificity (Sc/o) by 7%. Plastome transformation of this RsRubisco Loop 6 mutant into tobacco enhanced photosynthesis and growth up to twofold over tobacco producing wild-type RsRubisco. Our findings demonstrate the utility of RsRubisco for the identification and in planta testing of amino acid grafts from algal Rubisco that can enhance the enzyme's carboxylase potential.
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Affiliation(s)
- Yu Zhou
- Plant Science Division, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
| | - Laura H Gunn
- Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
| | - Rosemary Birch
- Plant Science Division, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia
| | - Inger Andersson
- Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
- Norwegian College of Fisheries Sciences, UiT Arctic University of Norway, Tromsø, Norway
- Institute of Biotechnology, Academy of Sciences of the Czech Republic, Biocev, Vestec, Czech Republic
| | - Spencer M Whitney
- Plant Science Division, Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia.
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Wu A. Modelling plants across scales of biological organisation for guiding crop improvement. FUNCTIONAL PLANT BIOLOGY : FPB 2023; 50:435-454. [PMID: 37105931 DOI: 10.1071/fp23010] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Accepted: 04/06/2023] [Indexed: 06/07/2023]
Abstract
Grain yield improvement in globally important staple crops is critical in the coming decades if production is to keep pace with growing demand; so there is increasing interest in understanding and manipulating plant growth and developmental traits for better crop productivity. However, this is confounded by complex cross-scale feedback regulations and a limited ability to evaluate the consequences of manipulation on crop production. Plant/crop modelling could hold the key to deepening our understanding of dynamic trait-crop-environment interactions and predictive capabilities for supporting genetic manipulation. Using photosynthesis and crop growth as an example, this review summarises past and present experimental and modelling work, bringing about a model-guided crop improvement thrust, encompassing research into: (1) advancing cross-scale plant/crop modelling that connects across biological scales of organisation using a trait dissection-integration modelling principle; (2) improving the reliability of predicted molecular-trait-crop-environment system dynamics with experimental validation; and (3) innovative model application in synergy with cross-scale experimentation to evaluate G×M×E and predict yield outcomes of genetic intervention (or lack of it) for strategising further molecular and breeding efforts. The possible future roles of cross-scale plant/crop modelling in maximising crop improvement are discussed.
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Affiliation(s)
- Alex Wu
- Centre for Crop Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Brisbane, Qld, Australia
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Li R, He Y, Chen J, Zheng S, Zhuang C. Research Progress in Improving Photosynthetic Efficiency. Int J Mol Sci 2023; 24:ijms24119286. [PMID: 37298238 DOI: 10.3390/ijms24119286] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Revised: 05/23/2023] [Accepted: 05/24/2023] [Indexed: 06/12/2023] Open
Abstract
Photosynthesis is the largest mass- and energy-conversion process on Earth, and it is the material basis for almost all biological activities. The efficiency of converting absorbed light energy into energy substances during photosynthesis is very low compared to theoretical values. Based on the importance of photosynthesis, this article summarizes the latest progress in improving photosynthesis efficiency from various perspectives. The main way to improve photosynthetic efficiency is to optimize the light reactions, including increasing light absorption and conversion, accelerating the recovery of non-photochemical quenching, modifying enzymes in the Calvin cycle, introducing carbon concentration mechanisms into C3 plants, rebuilding the photorespiration pathway, de novo synthesis, and changing stomatal conductance. These developments indicate that there is significant room for improvement in photosynthesis, providing support for improving crop yields and mitigating changes in climate conditions.
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Affiliation(s)
- Ruiqi Li
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou 510642, China
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Life Sciences, South China Agricultural University, Guangzhou 510642, China
| | - Ying He
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou 510642, China
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Life Sciences, South China Agricultural University, Guangzhou 510642, China
| | - Junyu Chen
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou 510642, China
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Life Sciences, South China Agricultural University, Guangzhou 510642, China
| | - Shaoyan Zheng
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou 510642, China
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Life Sciences, South China Agricultural University, Guangzhou 510642, China
| | - Chuxiong Zhuang
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou 510642, China
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Life Sciences, South China Agricultural University, Guangzhou 510642, China
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Areche FO, López JMM, Mamani CMC, Alberto MNM, Araujo VGS, Pastrana PAP, Camayo-Lapa BF, Quispe-Solano MA, Saldarriaga JY, Ayre CPE, Carrasco SM, Roman AV, Flores DDC, Cruz Nieto DD. Photosynthetic modification of plants through recent technologies: a valuable way to ensure crop fortification. BRAZ J BIOL 2023; 83:e271809. [PMID: 37222373 DOI: 10.1590/1519-6984.271809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Accepted: 04/23/2023] [Indexed: 05/25/2023] Open
Abstract
The 2030 Sustainable Development Goals of the United Nations include a strong emphasis on ending hunger worldwide. According to the 2019 Global Food Security Index, while 88% of countries claim there is sufficient food supply in their country, the sad reality is that 1 in 3 countries is facing insufficient availability of food supply, which means that in those countries, more than 10% of the population is malnourished. Since nutrition is crucial to leading a healthy life and satisfying food security needs, several governments have turned to national nutrition surveys to gauge the extent of malnutrition in their populations. Plants are able to grow, develop, and store nutrients by photosynthesis, which convert light into chemical energy through cell redox regulatory networks. A photosynthesis system's electron flow may be adjusted to accommodate varying light and environmental circumstances. Many techniques exist for controlling the flow of electrons emitted during light processes in order to save or waste energy. The two protein molecules TROL and flavoenzyme ferredoxin (oxidoreductase+NADP) (FNR) interact dynamically to form an excellent molecular switch capable of splitting electrons from the photosystem. The TROL-FNR bifurcation may be limited by either generating NADPH or preventing reactive oxygen species from propagating. TROL-based genome editing is an experimental method for enhancing plant stress and defensive responses, efficiency, and ultimately agricultural production.
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Affiliation(s)
- F O Areche
- National University of Huancavelica, Huancavelica, Peru
| | - J M M López
- Santiago Antúnez of Mayolo National University, Huaraz, Peru
| | | | | | - V G S Araujo
- National University of Huancavelica, Huancavelica, Peru
| | | | | | | | - J Y Saldarriaga
- Santiago Antunez of Mayolo National University, Huaraz, Peru
| | - C P E Ayre
- National University of Huancavelica, Huancavelica, Peru
| | - S M Carrasco
- Micaela Bastidas National University of Apurimac, Abancay, Peru
| | - A V Roman
- Micaela Bastidas National University of Apurimac, Abancay, Peru
| | - D D C Flores
- National University of Huancavelica, Huancavelica, Peru
| | - D D Cruz Nieto
- José Faustino Sánchez Carrión National University, Huacho, Peru
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He Y, Matthews ML. Seasonal climate conditions impact the effectiveness of improving photosynthesis to increase soybean yield. FIELD CROPS RESEARCH 2023; 296:108907. [PMID: 37193044 PMCID: PMC10155077 DOI: 10.1016/j.fcr.2023.108907] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Revised: 01/31/2023] [Accepted: 03/22/2023] [Indexed: 05/18/2023]
Abstract
Context Photosynthetic stimulations have shown promising outcomes in improving crop photosynthesis, including soybean. However, it is still unclear to what extent these changes can impact photosynthetic assimilation and yield under long-term field climate conditions. Objective In this paper, we present a systematic evaluation of the response of canopy photosynthesis and yield to two critical parameters in leaf photosynthesis: the maximum carboxylation rate of ribulose-1,5-bisphosphate carboxylase/oxygenase (Vcmax) and the maximum electron transport of the ribulose-1,5-bisphosphate regeneration rate (Jmax). Methods Using the field-scale crop model Soybean-BioCro and ten years of observed climate data in Urbana, Illinois, U.S., we conducted sensitivity experiments to estimate the changes in canopy photosynthesis, leaf area index, and biomass due to the changes in Vcmax and Jmax. Results The results show that 1) Both the canopy photosynthetic assimilation (An) and pod biomass yields were more sensitive to the changes in Jmax, particularly at high atmospheric carbon-dioxide concentrations ([CO2]); 2) Higher [CO2] undermined the effectiveness of increasing the two parameters to improve An and yield; 3) Under the same [CO2], canopy light interception and canopy respiration were key factors that undermined improvements in An and yield; 4) A canopy with smaller leaf area index tended to have a higher yield improvement, and 5) Increases in assimilations and yields were highly dependent on growing-season climatic conditions. The solar radiation, temperature, and relative humidity were the main climate drivers that impacted the yield improvement, and they had opposite correlations with improved yield during the vegetative phase compared to the reproductive phase. Conclusions In a world with elevated [CO2], genetic engineering crop photosynthesis should focus more on improving Jmax. Further, long-term climate conditions and seasonal variations must be considered to determine the improvements in soybean canopy photosynthesis and yield at the field scale. Implications Quantifying the effectiveness of changing Vcmax and Jmax helps understand their individual and combined contributions to potential improvements in assimilation and yield. This work provides a framework for evaluating how altering the photosynthetic rate parameters impacts soybean yield and assimilation under different seasonal climate scenarios at the field scale.
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Affiliation(s)
- Yufeng He
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, IL 61801, USA
| | - Megan L. Matthews
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, IL 61801, USA
- Department of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, IL 61801, USA
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Paul A, Mondal S, Pal A, Biswas S, Chakraborty K, Mazumder A, Biswas AK, Kundu R. Seed priming with NaCl helps to improve tissue tolerance, potassium retention ability of plants, and protects the photosynthetic ability in two different legumes, chickpea and lentil, under salt stress. PLANTA 2023; 257:111. [PMID: 37156996 DOI: 10.1007/s00425-023-04150-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Accepted: 04/28/2023] [Indexed: 05/10/2023]
Abstract
MAIN CONCLUSION Seed priming with NaCl mimicked the conditions of natural priming to improve the tissue tolerance nature of sensitive legumes, which helps to maintain survivability and yield in mildly saline areas. Seed priming with NaCl is a seed invigoration technique that helps to improve plant growth by altering Na+ and K+ content under salt stress. Legumes are overall sensitive to salt and salinity hampers their growth and yield. Therefore, a priming (50 mM NaCl) experiment was performed with two different legume members [Cicer arietinum cv. Anuradha and Lens culinaris cv. Ranjan] and different morpho-physiological, biochemical responses at 50 mM, 100 mM, and 150 mM NaCl and molecular responses at 150 mM NaCl were studied in hydroponically grown nonprimed and primed members. Similarly, a pot experiment was performed at 80 mM Na+, to check the yield. Tissue Na+ and K+ content suggested NaCl-priming did not significantly alter the accumulation of Na+ among nonprimed and primed members but retained more K+ in cells, thus maintaining a lower cellular Na+/K+ ratio. Low osmolyte content (e.g., proline) in primed members suggested priming could minimize their overall osmolytic requirement. Altogether, these implied tissue tolerance (TT) nature might have improved in case of NaCl-priming as was also reflected by a better TT score (LC50 value). An improved TT nature enabled the primed plants to maintain a significantly higher photosynthetic rate through better stomatal conductance. Along with this, a higher level of chlorophyll content and competent functioning of the photosynthetic subunits improved photosynthetic performance that ensured yield under stress. Overall, this study explores the potential of NaCl-priming and creates possibilities for considerably sensitive members; those in their nonprimed forms have no prospect in mildly saline agriculture.
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Affiliation(s)
- Alivia Paul
- Plant Physiology and Biochemistry Laboratory, CAS, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India
- Cell Biology Laboratory, CAS, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India
| | - Subhankar Mondal
- Crop Physiology and Biochemistry Division, ICAR-National Rice Research Institute, Cuttack, Odisha, 753006, India
- Department of Botany, Utkal University, Vani Vihar, Bhubaneswar, Odisha, 751004, India
| | - Asmita Pal
- Cell Biology Laboratory, CAS, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India
| | - Soumyajit Biswas
- Regional-Cum-Facilitation Centre (Eastern Region), National Medical Plants Board (NMPB), Ministry of Ayush, Govt. of India, Jadavpur University, Kolkata, 700032, India
| | - Koushik Chakraborty
- Crop Physiology and Biochemistry Division, ICAR-National Rice Research Institute, Cuttack, Odisha, 753006, India
| | - Asis Mazumder
- Regional-Cum-Facilitation Centre (Eastern Region), National Medical Plants Board (NMPB), Ministry of Ayush, Govt. of India, Jadavpur University, Kolkata, 700032, India
| | - Asok K Biswas
- Plant Physiology and Biochemistry Laboratory, CAS, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India.
| | - Rita Kundu
- Cell Biology Laboratory, CAS, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India.
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Xia Z, Wu M, Bai J, Zhang S, Zhang G, Gong Y, Yang Y, Lu H. Root zone temperature regulates potassium absorption and photosynthesis in maize (Zea mays). PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 198:107694. [PMID: 37062126 DOI: 10.1016/j.plaphy.2023.107694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 03/31/2023] [Accepted: 04/04/2023] [Indexed: 05/07/2023]
Abstract
Affected by climate warming, the impact of crop root zone warming (RZW) on maize seedling growth and nutrient uptake deserve attention. The characteristics of K uptake in maize under root zone warming and the combined impacts of potassium deficiency and RZW are still unclear. The present study aimed to investigate the effects of RZW on potassium absorption and photosynthesis of maize seedlings under the difference in potassium. The results showed that RZW and low potassium treatment significantly affected root shoot development and photosynthetic physiological characteristics of maize seedlings. Moreover, the interaction of RZW and potassium content had striking influence on maize seedlings. Under the normal potassium with root zone medium temperature treatment, the development of maize was the most vigorous. Under the dual stress of high root zone temperature and low potassium, the root absorption area, total potassium content and root activity were significantly reduced, which then influenced the light energy use efficiency and dry matter accumulation. Securing the supply of potassium fertilizer under high root zone temperature stress is useful to alleviate the impact of high temperature stress.
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Affiliation(s)
- Zhenqing Xia
- College of Agronomy of Northwest A & F University, Yangling, Shaanxi, 712100, China
| | - Mengke Wu
- College of Agronomy of Northwest A & F University, Yangling, Shaanxi, 712100, China
| | - Jingxuan Bai
- College of Agronomy of Northwest A & F University, Yangling, Shaanxi, 712100, China
| | - Shibo Zhang
- College of Agronomy of Northwest A & F University, Yangling, Shaanxi, 712100, China
| | - Guixin Zhang
- College of Agronomy of Northwest A & F University, Yangling, Shaanxi, 712100, China
| | - Yuxiang Gong
- College of Agronomy of Northwest A & F University, Yangling, Shaanxi, 712100, China
| | - Yi Yang
- College of Agronomy of Northwest A & F University, Yangling, Shaanxi, 712100, China
| | - Haidong Lu
- College of Agronomy of Northwest A & F University, Yangling, Shaanxi, 712100, China.
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De Souza AP. Dynamic responses of carbon assimilation and stomatal conductance in the future climate. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:2790-2793. [PMID: 37103002 DOI: 10.1093/jxb/erad049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
This article comments on:
Wall S, Cockram J, Vialet-Chabrand S, Van Rie J, Galle A, Lawson T. 2023. The impact of growth at elevated [CO2] on stomatal anatomy and behavior differs between wheat species and cultivars. Journal of Experimental Botany 74, 2860–2874
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Affiliation(s)
- Amanda P De Souza
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
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49
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Vatankhah A, Aliniaeifard S, Moosavi-Nezhad M, Abdi S, Mokhtarpour Z, Reezi S, Tsaniklidis G, Fanourakis D. Plants exposed to titanium dioxide nanoparticles acquired contrasting photosynthetic and morphological strategies depending on the growing light intensity: a case study in radish. Sci Rep 2023; 13:5873. [PMID: 37041194 PMCID: PMC10090060 DOI: 10.1038/s41598-023-32466-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Accepted: 03/28/2023] [Indexed: 04/13/2023] Open
Abstract
Due to the photocatalytic property of titanium dioxide (TiO2), its application may be dependent on the growing light environment. In this study, radish plants were cultivated under four light intensities (75, 150, 300, and 600 μmol m-2 s-1 photosynthetic photon flux density, PPFD), and were weekly sprayed (three times in total) with TiO2 nanoparticles at different concentrations (0, 50, and 100 μmol L-1). Based on the obtained results, plants used two contrasting strategies depending on the growing PPFD. In the first strategy, as a result of exposure to high PPFD, plants limited their leaf area and send the biomass towards the underground parts to limit light-absorbing surface area, which was confirmed by thicker leaves (lower specific leaf area). TiO2 further improved the allocation of biomass to the underground parts when plants were exposed to higher PPFDs. In the second strategy, plants dissipated the absorbed light energy into the heat (NPQ) to protect the photosynthetic apparatus from high energy input due to carbohydrate and carotenoid accumulation as a result of exposure to higher PPFDs or TiO2 concentrations. TiO2 nanoparticle application up-regulated photosynthetic functionality under low, while down-regulated it under high PPFD. The best light use efficiency was noted at 300 m-2 s-1 PPFD, while TiO2 nanoparticle spray stimulated light use efficiency at 75 m-2 s-1 PPFD. In conclusion, TiO2 nanoparticle spray promotes plant growth and productivity, and this response is magnified as cultivation light intensity becomes limited.
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Affiliation(s)
- Akram Vatankhah
- Photosynthesis Laboratory, Department of Horticulture, Aburaihan Campus, University of Tehran, P.O. Box 33916-53755, Tehran, Iran
- Department of Horticulture, Faculty of Agriculture, University of Shahrekord, Shahrekord, Iran
| | - Sasan Aliniaeifard
- Photosynthesis Laboratory, Department of Horticulture, Aburaihan Campus, University of Tehran, P.O. Box 33916-53755, Tehran, Iran.
| | - Moein Moosavi-Nezhad
- Photosynthesis Laboratory, Department of Horticulture, Aburaihan Campus, University of Tehran, P.O. Box 33916-53755, Tehran, Iran
- Department of Horticultural Sciences, North Carolina State University, Raleigh, NC, 27695, USA
| | - Sahar Abdi
- Photosynthesis Laboratory, Department of Horticulture, Aburaihan Campus, University of Tehran, P.O. Box 33916-53755, Tehran, Iran
| | - Zakieh Mokhtarpour
- Photosynthesis Laboratory, Department of Horticulture, Aburaihan Campus, University of Tehran, P.O. Box 33916-53755, Tehran, Iran
| | - Saeed Reezi
- Department of Horticulture, Faculty of Agriculture, University of Shahrekord, Shahrekord, Iran
| | - Georgios Tsaniklidis
- Laboratory of Vegetable Crops, Institute of Olive Tree, Subtropical Plants and Viticulture, Hellenic Agricultural Organization 'ELGO DIMITRA', 73100, Chania, Greece
| | - Dimitrios Fanourakis
- Laboratory of Quality and Safety of Agricultural Products, Landscape and Environment, Department of Agriculture, School of Agricultural Sciences, Hellenic Mediterranean University, Estavromenos, 71004, Heraklion, Greece
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Chao M, Hu G, Dong J, Chen Y, Fu Y, Zhang J, Wang Q. Sequence Characteristics and Expression Analysis of the Gene Encoding Sedoheptulose-1,7-Bisphosphatase, an Important Calvin Cycle Enzyme in Upland Cotton (Gossypium hirsutum L.). Int J Mol Sci 2023; 24:ijms24076648. [PMID: 37047620 PMCID: PMC10095544 DOI: 10.3390/ijms24076648] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Revised: 03/30/2023] [Accepted: 03/31/2023] [Indexed: 04/05/2023] Open
Abstract
Sedoheptulose-1,7-bisphosphatase (SBPase, EC 3.1.3.37) is a key enzyme in the plant Calvin cycle and one of the main rate-limiting enzymes in the plant photosynthesis pathway. Many studies have demonstrated that the SBPase gene plays an important role in plant photosynthetic efficiency, yield, and stress responses; however, few studies have been conducted on the function and expression of the GhSBPase gene in upland cotton. In this study, our results showed that the coding sequence (CDS) of GhSBPase gene was 1182 bp, encoding a protein with 393 amino acids. The GhSBPase protein had adenosine monophosphate (AMP) binding site and a FIG (FBPase/IMPase/glpX) domain, and had six Cys residues and a CGGT(A/Q)C motif that were involved in redox regulation in plants. Evolutionarily, the GhSBPase protein clustered into the dicotyledon subgroup and was most closely related to the tomato SlSBPase protein. Western-blot analysis further indicated that the GhSBPase gene was indeed the gene encoding the SBPase protein in upland cotton. The GhSBPase protein was localized in chloroplast, which was consistent with its function as a key enzyme in photosynthesis. The GhSBPase gene was specifically highly expressed in leaves, and its expression level was significantly lower in a yellow-green leaf mutant than in the wild type. Moreover, the GhSBPase expression was in response to drought, salt, high- and low-temperature stress, and exhibits different expression patterns. The GhSBPase promoter had the cis-acting elements in response to abiotic stress, phytohormone, and light. In addition, the GhSBPase expression was positively correlated with the chlorophyll fluorescence parameters, suggesting that changes in the expression of the GhSBPase had potential applicability in breeding for enhanced cotton photosynthetic efficiency. These results will help to understand the function of the GhSBPase gene in photosynthesis and the adaptability of plants to external stress and provide important gene information for the high-yield breeding of crops in the future.
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Affiliation(s)
- Maoni Chao
- Henan Collaborative Innovation Center of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang 453003, China
| | - Genhai Hu
- Henan Collaborative Innovation Center of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang 453003, China
| | - Jie Dong
- State Key Laboratory of Crop Biology, College of Agronomy, Shandong Agricultural University, Tai’an 271018, China
| | - Yu Chen
- Institute of Industrial Crops, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Yuanzhi Fu
- Henan Collaborative Innovation Center of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang 453003, China
| | - Jinbao Zhang
- Henan Collaborative Innovation Center of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang 453003, China
| | - Qinglian Wang
- Henan Collaborative Innovation Center of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang 453003, China
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