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For: Droc G, Ruiz M, Larmande P, Pereira A, Piffanelli P, Morel JB, Dievart A, Courtois B, Guiderdoni E, Périn C. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res 2006;34:D736-40. [PMID: 16381969 PMCID: PMC1347375 DOI: 10.1093/nar/gkj012] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]  Open
Number Cited by Other Article(s)
1
Vishwakarma C, Krishna GK, Kapoor RT, Mathur K, Dalal M, Singh NK, Mohapatra T, Chinnusamy V. Physiological Analysis of Source-Sink Relationship in Rice Genotypes with Contrasting Grain Yields. PLANTS (BASEL, SWITZERLAND) 2023;13:62. [PMID: 38202369 PMCID: PMC10780537 DOI: 10.3390/plants13010062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Revised: 11/19/2023] [Accepted: 11/22/2023] [Indexed: 01/12/2024]
2
Xiong H, Guo H, Fu M, Xie Y, Zhao L, Gu J, Zhao S, Ding Y, Du Q, Zhang J, Qiu L, Xie X, Zhou L, Chen Z, Liu L. A large-scale whole-exome sequencing mutant resource for functional genomics in wheat. PLANT BIOTECHNOLOGY JOURNAL 2023;21:2047-2056. [PMID: 37401008 PMCID: PMC10502753 DOI: 10.1111/pbi.14111] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 06/01/2023] [Accepted: 06/15/2023] [Indexed: 07/05/2023]
3
Ahmad M. Genomics and transcriptomics to protect rice (Oryza sativa. L.) from abiotic stressors: -pathways to achieving zero hunger. FRONTIERS IN PLANT SCIENCE 2022;13:1002596. [PMID: 36340401 PMCID: PMC9630331 DOI: 10.3389/fpls.2022.1002596] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 09/29/2022] [Indexed: 06/16/2023]
4
Zhang YC, Zhou YF, Cheng Y, Huang JH, Lian JP, Yang L, He RR, Lei MQ, Liu YW, Yuan C, Zhao WL, Xiao S, Chen YQ. Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regeneration. Genome Biol 2022;23:28. [PMID: 35045887 PMCID: PMC8772118 DOI: 10.1186/s13059-022-02608-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2021] [Accepted: 01/12/2022] [Indexed: 12/14/2022]  Open
5
Zhang X, Hu Y, Smith DR. HSDFinder: A BLAST-Based Strategy for Identifying Highly Similar Duplicated Genes in Eukaryotic Genomes. FRONTIERS IN BIOINFORMATICS 2021;1:803176. [PMID: 36303740 PMCID: PMC9580922 DOI: 10.3389/fbinf.2021.803176] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2021] [Accepted: 11/25/2021] [Indexed: 01/01/2023]  Open
6
Iqbal Z, Iqbal MS, Khan MIR, Ansari MI. Toward Integrated Multi-Omics Intervention: Rice Trait Improvement and Stress Management. FRONTIERS IN PLANT SCIENCE 2021;12:741419. [PMID: 34721467 PMCID: PMC8554098 DOI: 10.3389/fpls.2021.741419] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Accepted: 09/20/2021] [Indexed: 05/04/2023]
7
Hu W, Figueroa‐Balderas R, Chi‐Ham C, Lagarias JC. Regulation of monocot and dicot plant development with constitutively active alleles of phytochrome B. PLANT DIRECT 2020;4:e00210. [PMID: 32346668 PMCID: PMC7184922 DOI: 10.1002/pld3.210] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2019] [Revised: 02/03/2020] [Accepted: 02/25/2020] [Indexed: 05/31/2023]
8
Hong WJ, Kim YJ, Chandran AKN, Jung KH. Infrastructures of systems biology that facilitate functional genomic study in rice. RICE (NEW YORK, N.Y.) 2019;12:15. [PMID: 30874968 PMCID: PMC6419666 DOI: 10.1186/s12284-019-0276-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2018] [Accepted: 03/06/2019] [Indexed: 05/08/2023]
9
Mieulet D, Aubert G, Bres C, Klein A, Droc G, Vieille E, Rond-Coissieux C, Sanchez M, Dalmais M, Mauxion JP, Rothan C, Guiderdoni E, Mercier R. Unleashing meiotic crossovers in crops. NATURE PLANTS 2018. [PMID: 30478361 DOI: 10.1101/343509] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
10
Mieulet D, Aubert G, Bres C, Klein A, Droc G, Vieille E, Rond-Coissieux C, Sanchez M, Dalmais M, Mauxion JP, Rothan C, Guiderdoni E, Mercier R. Unleashing meiotic crossovers in crops. NATURE PLANTS 2018;4:1010-1016. [PMID: 30478361 DOI: 10.1038/s41477-018-0311-x] [Citation(s) in RCA: 73] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Accepted: 10/17/2018] [Indexed: 05/21/2023]
11
Venkatesan A, Tagny Ngompe G, Hassouni NE, Chentli I, Guignon V, Jonquet C, Ruiz M, Larmande P. Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy. PLoS One 2018;13:e0198270. [PMID: 30500839 PMCID: PMC6269127 DOI: 10.1371/journal.pone.0198270] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2018] [Accepted: 09/03/2018] [Indexed: 12/22/2022]  Open
12
Giri J, Bhosale R, Huang G, Pandey BK, Parker H, Zappala S, Yang J, Dievart A, Bureau C, Ljung K, Price A, Rose T, Larrieu A, Mairhofer S, Sturrock CJ, White P, Dupuy L, Hawkesford M, Perin C, Liang W, Peret B, Hodgman CT, Lynch J, Wissuwa M, Zhang D, Pridmore T, Mooney SJ, Guiderdoni E, Swarup R, Bennett MJ. Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate. Nat Commun 2018;9:1408. [PMID: 29650967 PMCID: PMC5897452 DOI: 10.1038/s41467-018-03850-4] [Citation(s) in RCA: 83] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2017] [Accepted: 03/16/2018] [Indexed: 11/09/2022]  Open
13
Sandhu M, Sureshkumar V, Prakash C, Dixit R, Solanke AU, Sharma TR, Mohapatra T, S V AM. RiceMetaSys for salt and drought stress responsive genes in rice: a web interface for crop improvement. BMC Bioinformatics 2017;18:432. [PMID: 28964253 PMCID: PMC5622590 DOI: 10.1186/s12859-017-1846-y] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2016] [Accepted: 09/21/2017] [Indexed: 11/17/2022]  Open
14
Li G, Jain R, Chern M, Pham NT, Martin JA, Wei T, Schackwitz WS, Lipzen AM, Duong PQ, Jones KC, Jiang L, Ruan D, Bauer D, Peng Y, Barry KW, Schmutz J, Ronald PC. The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies. THE PLANT CELL 2017;29:1218-1231. [PMID: 28576844 PMCID: PMC5502455 DOI: 10.1105/tpc.17.00154] [Citation(s) in RCA: 92] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2017] [Revised: 05/16/2017] [Accepted: 06/01/2017] [Indexed: 05/19/2023]
15
Hinrichs M, Fleck AT, Biedermann E, Ngo NS, Schreiber L, Schenk MK. An ABC Transporter Is Involved in the Silicon-Induced Formation of Casparian Bands in the Exodermis of Rice. FRONTIERS IN PLANT SCIENCE 2017;8:671. [PMID: 28503184 PMCID: PMC5408559 DOI: 10.3389/fpls.2017.00671] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2017] [Accepted: 04/12/2017] [Indexed: 05/18/2023]
16
Mieulet D, Jolivet S, Rivard M, Cromer L, Vernet A, Mayonove P, Pereira L, Droc G, Courtois B, Guiderdoni E, Mercier R. Turning rice meiosis into mitosis. Cell Res 2016;26:1242-1254. [PMID: 27767093 DOI: 10.1038/cr.2016.117] [Citation(s) in RCA: 88] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2016] [Revised: 08/09/2016] [Accepted: 08/30/2016] [Indexed: 11/09/2022]  Open
17
Dievart A, Perin C, Hirsch J, Bettembourg M, Lanau N, Artus F, Bureau C, Noel N, Droc G, Peyramard M, Pereira S, Courtois B, Morel JB, Guiderdoni E. The phenome analysis of mutant alleles in Leucine-Rich Repeat Receptor-Like Kinase genes in rice reveals new potential targets for stress tolerant cereals. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2016;242:240-249. [PMID: 26566841 DOI: 10.1016/j.plantsci.2015.06.019] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2015] [Revised: 06/17/2015] [Accepted: 06/22/2015] [Indexed: 05/08/2023]
18
Khong GN, Pati PK, Richaud F, Parizot B, Bidzinski P, Mai CD, Bès M, Bourrié I, Meynard D, Beeckman T, Selvaraj MG, Manabu I, Genga AM, Brugidou C, Nang Do V, Guiderdoni E, Morel JB, Gantet P. OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice. PLANT PHYSIOLOGY 2015;169:2935-49. [PMID: 26424158 PMCID: PMC4677910 DOI: 10.1104/pp.15.01192] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2015] [Accepted: 09/28/2015] [Indexed: 05/19/2023]
19
Ishikawa T, Aki T, Yanagisawa S, Uchimiya H, Kawai-Yamada M. Overexpression of BAX INHIBITOR-1 Links Plasma Membrane Microdomain Proteins to Stress. PLANT PHYSIOLOGY 2015;169:1333-43. [PMID: 26297139 PMCID: PMC4587443 DOI: 10.1104/pp.15.00445] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2015] [Accepted: 08/17/2015] [Indexed: 05/22/2023]
20
Coudert Y, Le VAT, Adam H, Bès M, Vignols F, Jouannic S, Guiderdoni E, Gantet P. Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. THE NEW PHYTOLOGIST 2015;206:243-254. [PMID: 25442012 DOI: 10.1111/nph.13196] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2014] [Accepted: 10/22/2014] [Indexed: 05/22/2023]
21
Zhang YC, Liao JY, Li ZY, Yu Y, Zhang JP, Li QF, Qu LH, Shu WS, Chen YQ. Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice. Genome Biol 2014;15:512. [PMID: 25517485 PMCID: PMC4253996 DOI: 10.1186/s13059-014-0512-1] [Citation(s) in RCA: 362] [Impact Index Per Article: 36.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2014] [Accepted: 10/28/2014] [Indexed: 01/09/2023]  Open
22
Cesari S, Thilliez G, Ribot C, Chalvon V, Michel C, Jauneau A, Rivas S, Alaux L, Kanzaki H, Okuyama Y, Morel JB, Fournier E, Tharreau D, Terauchi R, Kroj T. The rice resistance protein pair RGA4/RGA5 recognizes the Magnaporthe oryzae effectors AVR-Pia and AVR1-CO39 by direct binding. THE PLANT CELL 2013;25:1463-81. [PMID: 23548743 PMCID: PMC3663280 DOI: 10.1105/tpc.112.107201] [Citation(s) in RCA: 341] [Impact Index Per Article: 31.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
23
Puig J, Meynard D, Khong GN, Pauluzzi G, Guiderdoni E, Gantet P. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr Patterns 2013;13:160-70. [PMID: 23466806 DOI: 10.1016/j.gep.2013.02.004] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2012] [Revised: 02/16/2013] [Accepted: 02/20/2013] [Indexed: 11/29/2022]
24
Rawat N, Himabindu K, Neeraja CN, Nair S, Bentur JS. Suppressive subtraction hybridization reveals that rice gall midge attack elicits plant-pathogen-like responses in rice. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2013;63:122-130. [PMID: 23257077 DOI: 10.1016/j.plaphy.2012.11.021] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2012] [Accepted: 11/22/2012] [Indexed: 05/28/2023]
25
Mieulet D, Diévart A, Droc G, Lanau N, Guiderdoni E. Reverse genetics in rice using Tos17. Methods Mol Biol 2013;1057:205-221. [PMID: 23918431 DOI: 10.1007/978-1-62703-568-2_15] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
26
The screening and preliminary construction of quality mutant population for cultivar “Nipponbare” in japonica rice (Oryza sativa). Biologia (Bratisl) 2012. [DOI: 10.2478/s11756-012-0106-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
27
Lorieux M, Blein M, Lozano J, Bouniol M, Droc G, Diévart A, Périn C, Mieulet D, Lanau N, Bès M, Rouvière C, Gay C, Piffanelli P, Larmande P, Michel C, Barnola I, Biderre-Petit C, Sallaud C, Perez P, Bourgis F, Ghesquière A, Gantet P, Tohme J, Morel JB, Guiderdoni E. In-depth molecular and phenotypic characterization in a rice insertion line library facilitates gene identification through reverse and forward genetics approaches. PLANT BIOTECHNOLOGY JOURNAL 2012;10:555-68. [PMID: 22369597 DOI: 10.1111/j.1467-7652.2012.00689.x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
28
Rizal G, Karki S, Thakur V, Chatterjee J, A. Coe R, Wanchana S, Quick WP. Towards a C4 Rice. ACTA ACUST UNITED AC 2012. [DOI: 10.3923/ajcb.2012.13.31] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
29
Leoni C, Volpicella M, De Leo F, Gallerani R, Ceci LR. Genome walking in eukaryotes. FEBS J 2011;278:3953-77. [PMID: 21848672 DOI: 10.1111/j.1742-4658.2011.08307.x] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
30
Coudert Y, Bès M, Le TVA, Pré M, Guiderdoni E, Gantet P. Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice. BMC Genomics 2011;12:387. [PMID: 21806801 PMCID: PMC3163228 DOI: 10.1186/1471-2164-12-387] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2010] [Accepted: 08/01/2011] [Indexed: 12/17/2022]  Open
31
Dèrozier S, Samson F, Tamby JP, Guichard C, Brunaud V, Grevet P, Gagnot S, Label P, Leplé JC, Lecharny A, Aubourg S. Exploration of plant genomes in the FLAGdb++ environment. PLANT METHODS 2011;7:8. [PMID: 21447150 PMCID: PMC3073958 DOI: 10.1186/1746-4811-7-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2010] [Accepted: 03/29/2011] [Indexed: 05/04/2023]
32
Zhang J, Nallamilli BR, Mujahid H, Peng Z. OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa). THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2010;64:604-17. [PMID: 20822505 DOI: 10.1111/j.1365-313x.2010.04354.x] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
33
Vergne E, Grand X, Ballini E, Chalvon V, Saindrenan P, Tharreau D, Nottéghem JL, Morel JB. Preformed expression of defense is a hallmark of partial resistance to rice blast fungal pathogen Magnaporthe oryzae. BMC PLANT BIOLOGY 2010;10:206. [PMID: 20849575 PMCID: PMC2956555 DOI: 10.1186/1471-2229-10-206] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2009] [Accepted: 09/17/2010] [Indexed: 05/09/2023]
34
The screening of mutants and construction of mutant library for Oryza sativa cv. Nipponbare via ethyl methane sulphonate inducing. Biologia (Bratisl) 2010. [DOI: 10.2478/s11756-010-0059-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
35
Philippe R, Courtois B, McNally KL, Mournet P, El-Malki R, Le Paslier MC, Fabre D, Billot C, Brunel D, Glaszmann JC, This D. Structure, allelic diversity and selection of Asr genes, candidate for drought tolerance, in Oryza sativa L. and wild relatives. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2010;121:769-787. [PMID: 20454772 DOI: 10.1007/s00122-010-1348-z] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2010] [Accepted: 04/19/2010] [Indexed: 05/29/2023]
36
Petit J, Bourgeois E, Stenger W, Bès M, Droc G, Meynard D, Courtois B, Ghesquière A, Sabot F, Panaud O, Guiderdoni E. Diversity of the Ty-1 copia retrotransposon Tos17 in rice (Oryza sativa L.) and the AA genome of the Oryza genus. Mol Genet Genomics 2009;282:633-52. [PMID: 19856189 DOI: 10.1007/s00438-009-0493-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2009] [Accepted: 10/06/2009] [Indexed: 11/27/2022]
37
Papdi C, Joseph MP, Salamó IP, Vidal S, Szabados L. Genetic technologies for the identification of plant genes controlling environmental stress responses. FUNCTIONAL PLANT BIOLOGY : FPB 2009;36:696-720. [PMID: 32688681 DOI: 10.1071/fp09047] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2009] [Accepted: 06/11/2009] [Indexed: 06/11/2023]
38
Gu L, Guo R. Genome-wide detection and analysis of alternative splicing for nucleotide binding site-leucine-rich repeats sequences in rice. J Genet Genomics 2009;34:247-57. [PMID: 17498622 DOI: 10.1016/s1673-8527(07)60026-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2006] [Accepted: 08/03/2006] [Indexed: 11/20/2022]
39
Droc G, Périn C, Fromentin S, Larmande P. OryGenesDB 2008 update: database interoperability for functional genomics of rice. Nucleic Acids Res 2008;37:D992-5. [PMID: 19036791 PMCID: PMC2686528 DOI: 10.1093/nar/gkn821] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]  Open
40
Cao PJ, Bartley LE, Jung KH, Ronald PC. Construction of a rice glycosyltransferase phylogenomic database and identification of rice-diverged glycosyltransferases. MOLECULAR PLANT 2008;1:858-77. [PMID: 19825588 DOI: 10.1093/mp/ssn052] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
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Vergne E, Ballini E, Droc G, Tharreau D, Nottéghem JL, Morel JB. ARCHIPELAGO: a dedicated resource for exploiting past, present, and future genomic data on disease resistance regulation in rice. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2008;21:869-78. [PMID: 18533828 DOI: 10.1094/mpmi-21-7-0869] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
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Vandenbussche M, Janssen A, Zethof J, van Orsouw N, Peters J, van Eijk MJT, Rijpkema AS, Schneiders H, Santhanam P, de Been M, van Tunen A, Gerats T. Generation of a 3D indexed Petunia insertion database for reverse genetics. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2008;54:1105-14. [PMID: 18346192 DOI: 10.1111/j.1365-313x.2008.03482.x] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
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Conte MG, Gaillard S, Droc G, Perin C. Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants. BMC Genomics 2008;9:183. [PMID: 18426584 PMCID: PMC2377279 DOI: 10.1186/1471-2164-9-183] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2007] [Accepted: 04/21/2008] [Indexed: 12/04/2022]  Open
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Suzuki T, Eiguchi M, Kumamaru T, Satoh H, Matsusaka H, Moriguchi K, Nagato Y, Kurata N. MNU-induced mutant pools and high performance TILLING enable finding of any gene mutation in rice. Mol Genet Genomics 2008;279:213-223. [PMID: 17952471 DOI: 10.1007/s00438-007-02932] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2007] [Revised: 09/12/2007] [Accepted: 09/17/2007] [Indexed: 05/26/2023]
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Ribot C, Hirsch J, Balzergue S, Tharreau D, Nottéghem JL, Lebrun MH, Morel JB. Susceptibility of rice to the blast fungus, Magnaporthe grisea. JOURNAL OF PLANT PHYSIOLOGY 2008;165:114-24. [PMID: 17905473 DOI: 10.1016/j.jplph.2007.06.013] [Citation(s) in RCA: 97] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2007] [Revised: 06/25/2007] [Accepted: 06/26/2007] [Indexed: 05/17/2023]
46
Collard BCY, Vera Cruz CM, McNally KL, Virk PS, Mackill DJ. Rice molecular breeding laboratories in the genomics era: Current status and future considerations. INTERNATIONAL JOURNAL OF PLANT GENOMICS 2008;2008:524847. [PMID: 18528527 PMCID: PMC2408710 DOI: 10.1155/2008/524847] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2007] [Accepted: 03/15/2008] [Indexed: 05/20/2023]
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Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y, Numa H, Sakai H, Wu J, Itoh T, Sasaki T, Aono R, Fujii Y, Habara T, Harada E, Kanno M, Kawahara Y, Kawashima H, Kubooka H, Matsuya A, Nakaoka H, Saichi N, Sanbonmatsu R, Sato Y, Shinso Y, Suzuki M, Takeda JI, Tanino M, Todokoro F, Yamaguchi K, Yamamoto N, Yamasaki C, Imanishi T, Okido T, Tada M, Ikeo K, Tateno Y, Gojobori T, Lin YC, Wei FJ, Hsing YI, Zhao Q, Han B, Kramer MR, McCombie RW, Lonsdale D, O'Donovan CC, Whitfield EJ, Apweiler R, Koyanagi KO, Khurana JP, Raghuvanshi S, Singh NK, Tyagi AK, Haberer G, Fujisawa M, Hosokawa S, Ito Y, Ikawa H, Shibata M, Yamamoto M, Bruskiewich RM, Hoen DR, Bureau TE, Namiki N, Ohyanagi H, Sakai Y, Nobushima S, Sakata K, Barrero RA, Sato Y, Souvorov A, Smith-White B, Tatusova T, An S, An G, OOta S, Fuks G, Fuks G, Messing J, Christie KR, Lieberherr D, Kim H, Zuccolo A, Wing RA, Nobuta K, Green PJ, Lu C, Meyers BC, Chaparro C, Piegu B, Panaud O, Echeverria M. The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Res 2007;36:D1028-33. [PMID: 18089549 PMCID: PMC2238920 DOI: 10.1093/nar/gkm978] [Citation(s) in RCA: 195] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
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Conte MG, Gaillard S, Lanau N, Rouard M, Périn C. GreenPhylDB: a database for plant comparative genomics. Nucleic Acids Res 2007;36:D991-8. [PMID: 17986457 PMCID: PMC2238940 DOI: 10.1093/nar/gkm934] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]  Open
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Piffanelli P, Droc G, Mieulet D, Lanau N, Bès M, Bourgeois E, Rouvière C, Gavory F, Cruaud C, Ghesquière A, Guiderdoni E. Large-scale characterization of Tos17 insertion sites in a rice T-DNA mutant library. PLANT MOLECULAR BIOLOGY 2007;65:587-601. [PMID: 17874225 DOI: 10.1007/s11103-007-9222-3] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2007] [Accepted: 08/08/2007] [Indexed: 05/04/2023]
50
Suzuki T, Eiguchi M, Kumamaru T, Satoh H, Matsusaka H, Moriguchi K, Nagato Y, Kurata N. MNU-induced mutant pools and high performance TILLING enable finding of any gene mutation in rice. Mol Genet Genomics 2007;279:213-23. [PMID: 17952471 DOI: 10.1007/s00438-007-0293-2] [Citation(s) in RCA: 102] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2007] [Revised: 09/12/2007] [Accepted: 09/17/2007] [Indexed: 02/07/2023]
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