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Lin T, Tang J, Li S, Li S, Han S, Liu Y, Yang C, Chen G, Chen L, Zhu T. Drought stress-mediated differences in phyllosphere microbiome and associated pathogen resistance between male and female poplars. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023; 115:1100-1113. [PMID: 37177875 DOI: 10.1111/tpj.16283] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2022] [Revised: 05/04/2023] [Accepted: 05/10/2023] [Indexed: 05/15/2023]
Abstract
Phyllosphere-associated microbes play a crucial role in plant-pathogen interactions while their composition and diversity are strongly influenced by drought stress. As dioecious plant species exhibited secondary dimorphism between the two sexes in response to drought stress, whether such difference will lead to sex-specific differences in phyllosphere microbiome and associated pathogen resistance between male and female conspecifics is still unknown. In this study, we subjected female and male full siblings of a dioecious poplar species to a short period of drought treatment followed by artificial infection of a leaf pathogenic fungus. Our results showed that male plants grew better than females with or without drought stress. Female control plants had more leaf lesion area than males after pathogen infection, whereas drought stress reversed such a difference. Further correlation and in vitro toxicity tests suggested that drought-mediated sexual differences in pathogen resistance between the two plant sexes could be attributed to the shifts in structure and function of phyllosphere-associated microbiome rather than the amount of leaf main defensive chemicals contained in plant leaves. Supportively, the microbiome analysis through high-throughput sequencing indicated that female phyllosphere enriched a higher abundance of ecologically beneficial microbes that serve as biological plant protectants, while males harbored abundant phytopathogens under drought-stressed conditions. The results could provide potential implications for the selection of suitable poplar sex to plants in drought or semi-drought habitats.
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Affiliation(s)
- Tiantian Lin
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, Key Laboratory of Forest Protection of Sichuan Education Department, College of Forestry, Sichuan Agricultural University, 611130, Chengdu, China
- Ministry of Education Key Laboratory for Transboundary Ecosecurity of Southwest China and Centre of Invasion Biology, Institute of Biodiversity, Yunnan University, 650504, Kunming, China
| | - Jiayao Tang
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, Key Laboratory of Forest Protection of Sichuan Education Department, College of Forestry, Sichuan Agricultural University, 611130, Chengdu, China
| | - Shuying Li
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, Key Laboratory of Forest Protection of Sichuan Education Department, College of Forestry, Sichuan Agricultural University, 611130, Chengdu, China
| | - Shujiang Li
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, Key Laboratory of Forest Protection of Sichuan Education Department, College of Forestry, Sichuan Agricultural University, 611130, Chengdu, China
| | - Shan Han
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, Key Laboratory of Forest Protection of Sichuan Education Department, College of Forestry, Sichuan Agricultural University, 611130, Chengdu, China
| | - Yinggao Liu
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, Key Laboratory of Forest Protection of Sichuan Education Department, College of Forestry, Sichuan Agricultural University, 611130, Chengdu, China
| | - Chunlin Yang
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, Key Laboratory of Forest Protection of Sichuan Education Department, College of Forestry, Sichuan Agricultural University, 611130, Chengdu, China
| | - Gang Chen
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, Key Laboratory of Forest Protection of Sichuan Education Department, College of Forestry, Sichuan Agricultural University, 611130, Chengdu, China
| | - Lianghua Chen
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, Key Laboratory of Forest Protection of Sichuan Education Department, College of Forestry, Sichuan Agricultural University, 611130, Chengdu, China
| | - Tianhui Zhu
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, Key Laboratory of Forest Protection of Sichuan Education Department, College of Forestry, Sichuan Agricultural University, 611130, Chengdu, China
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Tahmasebi A, Niazi A, Akrami S. Integration of meta-analysis, machine learning and systems biology approach for investigating the transcriptomic response to drought stress in Populus species. Sci Rep 2023; 13:847. [PMID: 36646724 PMCID: PMC9842770 DOI: 10.1038/s41598-023-27746-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2022] [Accepted: 01/06/2023] [Indexed: 01/18/2023] Open
Abstract
In Populus, drought is a major problem affecting plant growth and development which can be closely reflected by corresponding transcriptomic changes. Nevertheless, how these changes in Populus are not fully understood. Here, we first used meta-analysis and machine learning methods to identify water stress-responsive genes and then performed a systematic approach to discover important gene networks. Our analysis revealed that large transcriptional variations occur during drought stress. These changes were more associated with the response to stress, cellular catabolic process, metabolic pathways, and hormone-related genes. The differential gene coexpression analysis highlighted two acetyltransferase NATA1-like and putative cytochrome P450 genes that have a special contribution in response to drought stress. In particular, the findings showed that MYBs and MAPKs have a prominent role in the drought stress response that could be considered to improve the drought tolerance of Populus. We also suggest ARF2-like and PYL4-like genes as potential markers for use in breeding programs. This study provides a better understanding of how Populus responses to drought that could be useful for improving tolerance to stress in Populus.
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Affiliation(s)
- Ahmad Tahmasebi
- Institute of Biotechnology, Shiraz University, Shiraz, 7144165186, Iran.
| | - Ali Niazi
- Institute of Biotechnology, Shiraz University, Shiraz, 7144165186, Iran.
| | - Sahar Akrami
- Institute of Biotechnology, Shiraz University, Shiraz, 7144165186, Iran
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He F, Wu Z, Zhao Z, Chen G, Wang X, Cui X, Zhu T, Chen L, Yang P, Bi L, Lin T. Drought stress drives sex-specific differences in plant resistance against herbivores between male and female poplars through changes in transcriptional and metabolic profiles. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 845:157171. [PMID: 35809724 DOI: 10.1016/j.scitotenv.2022.157171] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Revised: 06/30/2022] [Accepted: 06/30/2022] [Indexed: 06/15/2023]
Abstract
Drought stress poses adverse influence on plant growth and further alters plant-herbivore interactions. Such effect is enhanced as drought occurrence is reported to increase due to global warming. Although dioecious plant species have shown sex-specific response to drought stress through the changes in growth performance and stress tolerance, whether such changes will drive sex-specific differences in defense against herbivores between male and female plant conspecifics is barely studied. In the current study, female and male poplar full-siblings were submitted to moderate (75 % field water capacity) and severe drought (50 % field water capacity) stresses, followed by herbivore growth and feeding bioassays to test the effect of plant gender on herbivore growth and feeding performance of two specialist and two generalist leaf herbivores. The results showed that although the growth of both plant sexes was inhibited by the two drought levels, male plants performed better than female conspecifics. In the paired-choice bioassays, the specialist herbivores preferred female plants while the generalist herbivores fed more on the male plants without drought stress. Both the moderate and severe drought stresses reversed such preferences. In the triple-choice bioassays, the specialist herbivores preferred female control plants while the generalist herbivores fed more on female plants under severe drought. In addition, the specialist herbivores fed on female plants from severe drought stress grew the worst while the generalist herbivores gained the highest fresh weight. The transcriptomic and metabolomic profiling revealed that female plant leaves contained higher levels of flavonoids than males under control condition while severe drought stress remarkably reduced the levels of defensive metabolites such as flavonoids, isoflavonoids, neoflavonoids and alkaloids in female but not in male plant leaves.
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Affiliation(s)
- Fang He
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, College of Forestry, Sichuan Agricultural University, 611130 Chengdu, China
| | - Zhengqin Wu
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, College of Forestry, Sichuan Agricultural University, 611130 Chengdu, China
| | - Zhengbao Zhao
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, College of Forestry, Sichuan Agricultural University, 611130 Chengdu, China; College of Resources and Environmental Engineering, Sichuan Water Conservancy College, 611231 Chongzhou, China
| | - Gang Chen
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, College of Forestry, Sichuan Agricultural University, 611130 Chengdu, China
| | - Xuegui Wang
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, College of Forestry, Sichuan Agricultural University, 611130 Chengdu, China
| | - Xinglei Cui
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, College of Forestry, Sichuan Agricultural University, 611130 Chengdu, China
| | - Tianhui Zhu
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, College of Forestry, Sichuan Agricultural University, 611130 Chengdu, China
| | - Lianghua Chen
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, College of Forestry, Sichuan Agricultural University, 611130 Chengdu, China
| | - Peng Yang
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, College of Forestry, Sichuan Agricultural University, 611130 Chengdu, China
| | - Lingfeng Bi
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, College of Forestry, Sichuan Agricultural University, 611130 Chengdu, China
| | - Tiantian Lin
- Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, College of Forestry, Sichuan Agricultural University, 611130 Chengdu, China.
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Sun T, Yang Z, Chen J, Li Y, Wang J, Wang X, Tang X, Xiao H. Effects of Water Loss Stress under Tidal Effects on the Epiphytic Bacterial Community of Sargassum thunbergii in the Intertidal Zone. mSphere 2022; 7:e0030722. [PMID: 36173121 PMCID: PMC9599519 DOI: 10.1128/msphere.00307-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Accepted: 09/14/2022] [Indexed: 11/20/2022] Open
Abstract
Intertidal macroalgae face periodic water loss and rehydration caused by daily tidal changes. However, the effect of water loss stress on algal epiphytic bacteria has not yet been reported. In this study, the effects of water loss stress on the epiphytic bacteria community of Sargassum thunbergii were analyzed, and the different responses of epiphytic bacteria to water loss stress were compared between male and female algae. The results showed that after water loss stress, the diversity of the epiphytic bacterial community of S. thunbergii first decreased and then increased. Among the dominant taxa, the abundance of Cyanobacteria decreased significantly, whereas the abundance of Portibacter and Aquimarina first increased and then decreased. Additionally, the indicator species and the abundance of predicted functional genes related to carbon, nitrogen, and sulfur metabolism both changed significantly. More importantly, when the epiphytic bacteria were analyzed separately according to the algal sex, the changes in algal epiphytic bacterial community structure and indicator species were more significant, and there were sexual differences. Therefore, it was concluded that water loss stress has a significant effect on the community structure and function of the epiphytic bacteria on S. thunbergii. Meanwhile, the epiphytic bacteria community of two sexes of S. thunbergii differed in the response to water loss stress. IMPORTANCE Periodic water loss caused by the tide is an important environmental factor that is faced by intertidal macroalgae, but the impact of periodic water loss on the epiphytic bacterial communities associated with macroalgae is still unknown. Through this study, we found that the diversity, the relative abundance of dominant taxa, the indicator species, and the abundance of the predicted functional genes in the epiphytic bacteria on S. thunbergii changed with the time of water loss. Moreover, male and female S. thunbergii exhibited different responses to water loss stress. This study not only paves the way for the delineation of the interactions between S. thunbergii and its epiphytic bacteria but also provides new insights for the mechanisms of the adaptation and evolution of macroalgae in the intertidal zone.
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Affiliation(s)
- Tao Sun
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Zhibo Yang
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Jun Chen
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Yang Li
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Jing Wang
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Xiya Wang
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Xuexi Tang
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
| | - Hui Xiao
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
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5
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Transcriptomic Analysis Reveals Regulatory Networks for Osmotic Water Stress and Rewatering Response in the Leaves of Ginkgo biloba. FORESTS 2021. [DOI: 10.3390/f12121705] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
To elucidate the transcriptomic regulation mechanisms that underlie the response of Ginkgo biloba to dehydration and rehydration, we used ginkgo saplings exposed to osmotically driven water stress and subsequent rewatering. When compared with a control group, 137, 1453, 1148, and 679 genes were differentially expressed in ginkgo leaves responding to 2, 6, 12, and 24 h of water deficit, and 796 and 1530 genes were differentially expressed responding to 24 and 48 h of rewatering. Upregulated genes participated in the biosynthesis of abscisic acid, eliminating reactive oxygen species (ROS), and biosynthesis of flavonoids and bilobalide, and downregulated genes were involved in water transport and cell wall enlargement in water stress-treated ginkgo leaves. Under rehydration conditions, the genes associated with water transport and cell wall enlargement were upregulated, and the genes that participated in eliminating ROS and the biosynthesis of flavonoids and bilobalide were downregulated in the leaves of G. biloba. Furthermore, the weighted gene coexpression networks were established and correlated with distinct water stress and rewatering time-point samples. Hub genes that act as key players in the networks were identified. Overall, these results indicate that the gene coexpression networks play essential roles in the transcriptional reconfiguration of ginkgo leaves in response to water stress and rewatering.
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Lee SU, Mun BG, Bae EK, Kim JY, Kim HH, Shahid M, Choi YI, Hussain A, Yun BW. Drought Stress-Mediated Transcriptome Profile Reveals NCED as a Key Player Modulating Drought Tolerance in Populus davidiana. FRONTIERS IN PLANT SCIENCE 2021; 12:755539. [PMID: 34777433 PMCID: PMC8581814 DOI: 10.3389/fpls.2021.755539] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Accepted: 09/22/2021] [Indexed: 06/13/2023]
Abstract
Populus trichocarpa has been studied as a model poplar species through biomolecular approaches and was the first tree species to be genome sequenced. In this study, we employed a high throughput RNA-sequencing (RNA-seq) mediated leaf transcriptome analysis to investigate the response of four different Populus davidiana cultivars to drought stress. Following the RNA-seq, we compared the transcriptome profiles and identified two differentially expressed genes (DEGs) with contrasting expression patterns in the drought-sensitive and tolerant groups, i.e., upregulated in the drought-tolerant P. davidiana groups but downregulated in the sensitive group. Both these genes encode a 9-cis-epoxycarotenoid dioxygenase (NCED), a key enzyme required for abscisic acid (ABA) biosynthesis. The high-performance liquid chromatography (HPLC) measurements showed a significantly higher ABA accumulation in the cultivars of the drought-tolerant group following dehydration. The Arabidopsis nced3 loss-of-function mutants showed a significantly higher sensitivity to drought stress, ~90% of these plants died after 9 days of drought stress treatment. The real-time PCR analysis of several key genes indicated a strict regulation of drought stress at the transcriptional level in the P. davidiana drought-tolerant cultivars. The transgenic P. davidiana NCED3 overexpressing (OE) plants were significantly more tolerant to drought stress as compared with the NCED knock-down RNA interference (RNAi) lines. Further, the NCED OE plants accumulated a significantly higher quantity of ABA and exhibited strict regulation of drought stress at the transcriptional level. Furthermore, we identified several key differences in the amino acid sequence, predicted structure, and co-factor/ligand binding activity of NCED3 between drought-tolerant and susceptible P. davidiana cultivars. Here, we presented the first evidence of the significant role of NCED genes in regulating ABA-dependent drought stress responses in the forest tree P. davidiana and uncovered the molecular basis of NCED3 evolution associated with increased drought tolerance.
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Affiliation(s)
- Sang-Uk Lee
- School of Applied Biosciences, Kyungpook National University, Daegu, South Korea
| | - Bong-Gyu Mun
- School of Applied Biosciences, Kyungpook National University, Daegu, South Korea
| | - Eun-Kyung Bae
- Forest Microbiology Division, National Institute of Forest Science, Suwon-si, South Korea
| | - Jae-Young Kim
- School of Applied Biosciences, Kyungpook National University, Daegu, South Korea
| | - Hyun-Ho Kim
- School of Applied Biosciences, Kyungpook National University, Daegu, South Korea
| | - Muhammad Shahid
- School of Applied Biosciences, Kyungpook National University, Daegu, South Korea
- Agriculture Research Institute, Mingora, Swat, Pakistan
| | - Young-Im Choi
- Forest Biotechnology Division, National Institute of Forest Science, Suwon-si, South Korea
| | - Adil Hussain
- Department of Agriculture, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Byung-Wook Yun
- School of Applied Biosciences, Kyungpook National University, Daegu, South Korea
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Pervaiz T, Liu SW, Uddin S, Amjid MW, Niu SH, Wu HX. The Transcriptional Landscape and Hub Genes Associated with Physiological Responses to Drought Stress in Pinus tabuliformis. Int J Mol Sci 2021; 22:ijms22179604. [PMID: 34502511 PMCID: PMC8431770 DOI: 10.3390/ijms22179604] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2021] [Revised: 08/11/2021] [Accepted: 09/01/2021] [Indexed: 01/18/2023] Open
Abstract
Drought stress has an extensive impact on regulating various physiological, metabolic, and molecular responses. In the present study, the Pinus tabuliformis transcriptome was studied to evaluate the drought-responsive genes using RNA- Sequencing approache. The results depicted that photosynthetic rate and H2O conductance started to decline under drought but recovered 24 h after re-watering; however, the intercellular CO2 concentration (Ci) increased with the onset of drought. We identified 84 drought-responsive transcription factors, 62 protein kinases, 17 transcriptional regulators, and 10 network hub genes. Additionally, we observed the expression patterns of several important gene families, including 2192 genes positively expressed in all 48 samples, and 40 genes were commonly co-expressed in all drought and recovery stages compared with the control samples. The drought-responsive transcriptome was conserved mainly between P. tabuliformis and A. thaliana, as 70% (6163) genes had a homologous in arabidopsis, out of which 52% homologous (3178 genes corresponding to 2086 genes in Arabidopsis) were also drought response genes in arabidopsis. The collaborative network exhibited 10 core hub genes integrating with ABA-dependent and independent pathways closely conserved with the ABA signaling pathway in the transcription factors module. PtNCED3 from the ABA family genes had shown significantly different expression patterns under control, mild, prolonged drought, and recovery stages. We found the expression pattern was considerably increased with the prolonged drought condition. PtNCED3 highly expressed in all drought-tested samples; more interestingly, expression pattern was higher under mild and prolonged drought. PtNCED3 is reported as one of the important regulating enzymes in ABA synthesis. The continuous accumulation of ABA in leaves increased resistance against drought was due to accumulation of PtNCED3 under drought stress in the pine needles.
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Affiliation(s)
- Tariq Pervaiz
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; (T.P.); (S.-W.L.); (S.U.)
| | - Shuang-Wei Liu
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; (T.P.); (S.-W.L.); (S.U.)
| | - Saleem Uddin
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; (T.P.); (S.-W.L.); (S.U.)
| | - Muhammad Waqas Amjid
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Cotton Germplasm Enhancement and Application Engineering Research Center (Ministry of Education), Nanjing Agricultural University, Nanjing 210095, China;
| | - Shi-Hui Niu
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; (T.P.); (S.-W.L.); (S.U.)
- Correspondence: (S.-H.N.); (H.X.W.)
| | - Harry X. Wu
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; (T.P.); (S.-W.L.); (S.U.)
- Umea Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Linnaeus vag 6, SE-901 83 Umea, Sweden
- CSIRO National Research Collection Australia, Black Mountain Laboratory, Canberra, ACT 2601, Australia
- Correspondence: (S.-H.N.); (H.X.W.)
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Feng S, Sun H, Ma H, Zhang X, Ma S, Qiao K, Zhou A, Bu Y, Liu S. Sexual Differences in Physiological and Transcriptional Responses to Salinity Stress of Salix linearistipularis. FRONTIERS IN PLANT SCIENCE 2020; 11:517962. [PMID: 33193465 PMCID: PMC7604296 DOI: 10.3389/fpls.2020.517962] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2019] [Accepted: 09/29/2020] [Indexed: 05/28/2023]
Abstract
Willow (Salix), a dioecious plant, is an important ornamental tree species in the world. Salix linearistipularis, a perennial woody plant species naturally distributed on the Songnen Plain saline-alkali land in northeast China, has a high saline condition. To study the sexual differences of S. linearistipularis in salinity tolerance, the physiological and transcriptional responses to salinity were compared between female and male cuttings. Under salinity stress, the female leaves exhibited higher superoxide dismutase and peroxidase activities and photosynthetic capacity, and lower H2O2 contents than those of male leaves. Under salinity stress, sodium (Na+) accumulation in female leaves was lower than that in the male leaves. The non-invasive micro-test showed that the net Na+ efflux in the salt-treated female roots was higher than that in male roots. Physiological responses revealed that female cuttings were more tolerant than males, which may be mainly due to females having lower leaf Na+ accumulation and higher root Na+ efflux capacity than males. Transcriptional analyses showed that 108 differentially expressed salt-responsive genes were identified in both female and male roots; most of these showed sexual differences in expression patterns under salinity stress. RNA-seq combined with qPCR analysis showed that the salt-induced expression of four Na+/H+ antiporter (NHX) genes (SlNHX3, 5, 6, 7) in female roots was higher than that in male roots. Transcriptional analyses revealed that the higher Na+ efflux capacity in female roots than in male roots may be closely related to the differential expression of salt-responsive genes, especially NHX genes.
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Affiliation(s)
- Shuang Feng
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, Northeast Forestry University, Harbin, China
| | - Hongwei Sun
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, China
| | - Hongping Ma
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, China
| | - Xin Zhang
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, China
| | - Shurong Ma
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, Northeast Forestry University, Harbin, China
| | - Kun Qiao
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, China
| | - Aimin Zhou
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, China
| | - Yuanyuan Bu
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, Northeast Forestry University, Harbin, China
| | - Shenkui Liu
- The State Key Laboratory of Subtropical Silviculture, Zhejiang Agriculture and Forestry University, Hangzhou, China
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Gao H, Li J, Wang L, Zhang J, He C. Transcriptomic variation of the flower-fruit transition in Physalis and Solanum. PLANTA 2020; 252:28. [PMID: 32720160 DOI: 10.1007/s00425-020-03434-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Accepted: 07/22/2020] [Indexed: 06/11/2023]
Abstract
Gene expression variations in response to fertilization between Physalis and Solanum might play essential roles in species divergence and fruit evolution. Fertilization triggers variation in fruit development and morphology. The Chinese lantern, a morphological novelty derived from the calyx, is formed upon fertilization in Physalis but is not observed in Solanum. The underlying genetic variations are largely unknown. Here, we documented the developmental and morphological differences in the flower and fruit between Physalis floridana and Solanum pimpinellifolium and then evaluated both the transcript sequence variation and gene expression at the transcriptomic level at fertilization between the two species. In Physalis transcriptomic analysis, 468 unigenes were identified as differentially expressed genes (DEGs) that were strongly regulated by fertilization across 3 years. In comparison with tomato, 14,536 strict single-copy orthologous gene pairs were identified between P. floridana and S. pimpinellifolium in the flower-fruit transcriptome. Nine types of gene variations with specific GO-enriched patterns were identified, covering 58.82% orthologous gene pairs that were DEGs in either trend or dosage at the flower-fruit transition between the two species, which could adequately distinguish Solanum and Physalis, implying that differential gene expression at fertilization might play essential roles during the divergence and fruit evolution of Solanum-Physalis. Virus-induced gene silencing analyses revealed the developmental roles of some transcription factor genes in fertility, Chinese lantern development, and fruit weight control in Physalis. This study presents the first floral transcriptomic resource of Physalis, and reveals some candidate genetic variations accounting for the early fruit developmental evolution in Physalis in comparison to Solanum.
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Affiliation(s)
- Huihui Gao
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Nanxincun 20, Xiangshan, Beijing, 100093, China
- University of Chinese Academy of Sciences, Yuquan Road 19, Beijing, 100049, China
- School of Agronomy, Anhui Agricultural University, Hefei, 230036, China
| | - Jing Li
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Nanxincun 20, Xiangshan, Beijing, 100093, China
- University of Chinese Academy of Sciences, Yuquan Road 19, Beijing, 100049, China
| | - Li Wang
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Nanxincun 20, Xiangshan, Beijing, 100093, China
| | - Jisi Zhang
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Nanxincun 20, Xiangshan, Beijing, 100093, China
- University of Chinese Academy of Sciences, Yuquan Road 19, Beijing, 100049, China
| | - Chaoying He
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Nanxincun 20, Xiangshan, Beijing, 100093, China.
- University of Chinese Academy of Sciences, Yuquan Road 19, Beijing, 100049, China.
- The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China.
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Estravis-Barcala M, Mattera MG, Soliani C, Bellora N, Opgenoorth L, Heer K, Arana MV. Molecular bases of responses to abiotic stress in trees. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:3765-3779. [PMID: 31768543 PMCID: PMC7316969 DOI: 10.1093/jxb/erz532] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2019] [Accepted: 11/25/2019] [Indexed: 05/05/2023]
Abstract
Trees are constantly exposed to climate fluctuations, which vary with both time and geographic location. Environmental changes that are outside of the physiological favorable range usually negatively affect plant performance and trigger responses to abiotic stress. Long-living trees in particular have evolved a wide spectrum of molecular mechanisms to coordinate growth and development under stressful conditions, thus minimizing fitness costs. The ongoing development of techniques directed at quantifying abiotic stress has significantly increased our knowledge of physiological responses in woody plants. However, it is only within recent years that advances in next-generation sequencing and biochemical approaches have enabled us to begin to understand the complexity of the molecular systems that underlie these responses. Here, we review recent progress in our understanding of the molecular bases of drought and temperature stresses in trees, with a focus on functional, transcriptomic, epigenetic, and population genomic studies. In addition, we highlight topics that will contribute to progress in our understanding of the plastic and adaptive responses of woody plants to drought and temperature in a context of global climate change.
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Affiliation(s)
- Maximiliano Estravis-Barcala
- Instituto Andino Patagónico de Tecnologías Biológicas y Geoambientales, (Consejo Nacional de Investigaciones Científicas y Técnicas- Universidad Nacional del Comahue), San Carlos de Bariloche, Rio Negro, Argentina
| | - María Gabriela Mattera
- Instituto de Investigaciones Forestales y Agropecuarias Bariloche (Instituto Nacional de Tecnología Agropecuaria - Consejo Nacional de Investigaciones Científicas y Técnicas), San Carlos de Bariloche, Rio Negro, Argentina
| | - Carolina Soliani
- Instituto de Investigaciones Forestales y Agropecuarias Bariloche (Instituto Nacional de Tecnología Agropecuaria - Consejo Nacional de Investigaciones Científicas y Técnicas), San Carlos de Bariloche, Rio Negro, Argentina
| | - Nicolás Bellora
- Instituto Andino Patagónico de Tecnologías Biológicas y Geoambientales, (Consejo Nacional de Investigaciones Científicas y Técnicas- Universidad Nacional del Comahue), San Carlos de Bariloche, Rio Negro, Argentina
| | - Lars Opgenoorth
- Department of Ecology, Philipps University Marburg, Marburg, Germany
- Swiss Federal Research Institute WSL, BirmensdorfSwitzerland
| | - Katrin Heer
- Department of Conservation Biology, Philipps University Marburg, Marburg Germany
| | - María Verónica Arana
- Instituto de Investigaciones Forestales y Agropecuarias Bariloche (Instituto Nacional de Tecnología Agropecuaria - Consejo Nacional de Investigaciones Científicas y Técnicas), San Carlos de Bariloche, Rio Negro, Argentina
- Correspondence:
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11
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Peng S, Wu L, Seyler BC, Pei X, Li S, Huang Y. The combined effects of Cu and Pb on the sex-specific growth and physiology of the dioecious Populus yunnanensis. ENVIRONMENTAL RESEARCH 2020; 184:109276. [PMID: 32135356 DOI: 10.1016/j.envres.2020.109276] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2019] [Revised: 01/20/2020] [Accepted: 02/18/2020] [Indexed: 06/10/2023]
Abstract
In recent years, pollution by heavy metals (HM) has become an increasingly serious problem in forest ecosystems, making their remediation a primary research focus in China. Poplars are ideal candidates for phytoremediation because of their great commercial value, ability to produce large biomass, and high capacity for HM uptake. The individual and combined effects of copper (Cu) and lead (Pb) on Populus yunnanensis growth and physiology were tested for both male and female potted plants in four treatment groups: control, Pb only (1,000 mg kg-1 PbAc dry soil), Cu only (400 mg kg-1 CuSO4·5H2O dry soil), and combined Pb and Cu. Each treatment group contained 25 male and 25 female individuals. The experimental duration was 3 months. Compared with the control plants, the Cu and Pb treatment groups experienced reduced leaf, stem, root, and total biomass for both sexes, but the impact on growth rate was more severe in females than in males. The cellular ultrastructure of leaves was extensively damaged in both male and female trees but was more severely damaged in females. Male trees demonstrated a stronger Cu absorption ability with a bioconcentration factor 2.30 times that of females. Significant changes in pigment content, membrane lipid peroxidation, and protein oxidation (carbonyl) also indicated that females were more sensitive than males to Cu- and Pb-induced stress. The higher Cu and Pb tolerance in males correlated with better H2O2 scavenging ability and proline accumulation. Nevertheless, the combined stress from both Cu and Pb yielded greater negative effect on the growth and physiology of P. yunnanensis for both sexes.
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Affiliation(s)
- Shuming Peng
- College of Environment and Ecology, Chengdu University of Technology, Chengdu, 610059, Sichuan, China; State Environmental Protection Key Laboratory of Synergetic Control and Joint Remediation for Soil & Water Pollution, Chengdu University of Technology, Chengdu, 610059, Sichuan, China
| | - Liuran Wu
- College of Environment and Ecology, Chengdu University of Technology, Chengdu, 610059, Sichuan, China
| | - Barnabas C Seyler
- Department of the Environment, Sichuan University, Chengdu, 610065, Sichuan, China
| | - Xiangjun Pei
- College of Environment and Ecology, Chengdu University of Technology, Chengdu, 610059, Sichuan, China; State Environmental Protection Key Laboratory of Synergetic Control and Joint Remediation for Soil & Water Pollution, Chengdu University of Technology, Chengdu, 610059, Sichuan, China
| | - Shuxin Li
- Key Laboratory of Mountain Surface Processes and Ecological Regulation, Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, 610041, Sichuan, China
| | - Yi Huang
- College of Environment and Ecology, Chengdu University of Technology, Chengdu, 610059, Sichuan, China; State Environmental Protection Key Laboratory of Synergetic Control and Joint Remediation for Soil & Water Pollution, Chengdu University of Technology, Chengdu, 610059, Sichuan, China.
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12
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Transcriptomic and Metabolomic Analysis of the Heat-Stress Response of Populus tomentosa Carr. FORESTS 2019. [DOI: 10.3390/f10050383] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Plants have evolved mechanisms of stress tolerance responses to heat stress. However, little is known about metabolic responses to heat stress in trees. In this study, we exposed Populus tomentosa Carr. to control (25 °C) and heat stress (45 °C) treatments and analyzed the metabolic and transcriptomic effects. Heat stress increased the cellular concentration of H2O2 and the activities of antioxidant enzymes. The levels of proline, raffinose, and melibiose were increased by heat stress, whereas those of pyruvate, fumarate, and myo-inositol were decreased. The expression levels of most genes (PSB27, PSB28, LHCA5, PETB, and PETC) related to the light-harvesting complexes and photosynthetic electron transport system were downregulated by heat stress. Association analysis between key genes and altered metabolites indicated that glycolysis was enhanced, whereas the tricarboxylic acid (TCA) cycle was suppressed. The inositol phosphate; galactose; valine, leucine, and isoleucine; and arginine and proline metabolic pathways were significantly affected by heat stress. In addition, several transcription factors, including HSFA2, HSFA3, HSFA9, HSF4, MYB27, MYB4R1, and bZIP60 were upregulated, whereas WRKY13 and WRKY50 were downregulated by heat stress. Interestingly, under heat stress, the expression of DREB1, DREB2, DREB2E, and DREB5 was dramatically upregulated at 12 h. Our results suggest that proline, raffinose, melibiose, and several genes (e.g., PSB27, LHCA5, and PETB) and transcription factors (e.g., HSFAs and DREBs) are involved in the response to heat stress in P. tomentosa.
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Melnikova NV, Borkhert EV, Snezhkina AV, Kudryavtseva AV, Dmitriev AA. Sex-Specific Response to Stress in Populus. FRONTIERS IN PLANT SCIENCE 2017; 8:1827. [PMID: 29123538 PMCID: PMC5662629 DOI: 10.3389/fpls.2017.01827] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2017] [Accepted: 10/10/2017] [Indexed: 05/23/2023]
Abstract
Populus is an effective model for genetic studies in trees. The genus Populus includes dioecious species, and the differences exhibited in males and females have been intensively studied. This review focused on the distinctions between male and female poplar and aspen plants under stress conditions, such as drought, salinity, heavy metals, and nutrient deficiency on morphological, physiological, proteome, and gene expression levels. In most studies, males of Populus species were more adaptive to the majority of the stress conditions and showed less damage, better growth, and higher photosynthetic capacity and antioxidant activity than that of the females. However, in two recent studies, no differences in non-reproductive traits were revealed for male and female trees. This discrepancy of the results could be associated with experimental design: different species and genotypes, stress conditions, types of plant materials, sampling sizes. Knowledge of sex-specific differences is crucial for basic and applied research in Populus species.
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Jia J, Zhou J, Shi W, Cao X, Luo J, Polle A, Luo ZB. Comparative transcriptomic analysis reveals the roles of overlapping heat-/drought-responsive genes in poplars exposed to high temperature and drought. Sci Rep 2017; 7:43215. [PMID: 28233854 PMCID: PMC5324098 DOI: 10.1038/srep43215] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2016] [Accepted: 01/20/2017] [Indexed: 02/03/2023] Open
Abstract
High temperature (HT) and drought are both critical factors that constrain tree growth and survival under global climate change, but it is surprising that the transcriptomic reprogramming and physiological relays involved in the response to HT and/or drought remain unknown in woody plants. Thus, Populus simonii saplings were exposed to either ambient temperature or HT combined with sufficient watering or drought. RNA-sequencing analysis showed that a large number of genes were differentially expressed in poplar roots and leaves in response to HT and/or desiccation, but only a small number of these genes were identified as overlapping heat-/drought-responsive genes that are mainly involved in RNA regulation, transport, hormone metabolism, and stress. Furthermore, the overlapping heat-/drought-responsive genes were co-expressed and formed hierarchical genetic regulatory networks under each condition compared. HT-/drought-induced transcriptomic reprogramming is linked to physiological relays in poplar roots and leaves. For instance, HT- and/or drought-induced abscisic acid accumulation and decreases in auxin and other phytohormones corresponded well with the differential expression of a few genes involved in hormone metabolism. These results suggest that overlapping heat-/drought-responsive genes will play key roles in the transcriptional and physiological reconfiguration of poplars to HT and/or drought under future climatic scenarios.
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Affiliation(s)
- Jingbo Jia
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China.,College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, 712100, P. R. China
| | - Jing Zhou
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China
| | - Wenguang Shi
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China
| | - Xu Cao
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, 712100, P. R. China
| | - Jie Luo
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, 712100, P. R. China
| | - Andrea Polle
- Büsgen-Institute, Department of Forest Botany and Tree Physiology, Georg-August University, Büsgenweg 2, 37077 Göttingen, Germany
| | - Zhi-Bin Luo
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China
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15
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Li Y, Duan B, Chen J, Korpelainen H, Niinemets Ü, Li C. Males exhibit competitive advantages over females of Populus deltoides under salinity stress. TREE PHYSIOLOGY 2016; 36:1573-1584. [PMID: 27587482 DOI: 10.1093/treephys/tpw070] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2016] [Revised: 06/20/2016] [Accepted: 07/02/2016] [Indexed: 06/06/2023]
Abstract
Sexual competition among dioecious plants affects sex ratios and the spatial distribution of the sexes in different environments. At present, little is known about sexual dimorphisms induced by different competition patterns under salinity stress. We employed Populus deltoides as a model to investigate sex-related growth as well as physiological and biochemical responses to salinity stress under conditions of intrasexual and intersexual competition. Potted seedlings (two seedlings per pot; two females, two males, or one female and one male) were exposed to two salt levels (0 and 50 mM NaCl) and salinity- and competition-driven differences in growth, assimilation rate, water use, contents of leaf pigments and osmotica, hydrogen peroxide (H2O2), and antioxidant enzyme and nitrate reductase activity were examined. In the absence of salinity, no significant differences in competitive ability between males and females subjected to intrasexual competition were observed, although the growth of females was moderately greater under intersexual competition. The salinity treatment significantly increased the sex differences in competitive ability, especially under intersexual competition. Under salinity stress, males showed decreased height, but displayed greater capacity for osmotic adjustment, enhancement of long-term water-use efficiency and increase in antioxidant enzyme activities. The absolute values of these traits were greater in salt-stressed males than in females under intersexual competition. In addition, salt-stressed males accumulated less Cl- and had lower H2O2 contents than females. These data collectively demonstrate that the competitive advantage of females in non-stressed conditions is lost under salinity. Greater salinity resistance of males growing intermixed with females under salt stress can importantly affect the sex ratio of P. deltoides populations.
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Affiliation(s)
- Yan Li
- Ecological Security and Protection Key Laboratory of Sichuan Province, Mianyang Normal University, Mianyang 621000, Sichuan, China
- The Nurturing Station for the State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, Lin'an 311300, Zhejiang, China
| | - Baoli Duan
- Key Laboratory of Mountain Surface Processes and Ecological Regulation, Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu 610041, China
| | - Juan Chen
- Ecological Security and Protection Key Laboratory of Sichuan Province, Mianyang Normal University, Mianyang 621000, Sichuan, China
- Key Laboratory of Mountain Surface Processes and Ecological Regulation, Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu 610041, China
| | - Helena Korpelainen
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, PO Box 27, Helsinki FI-00014, Finland
| | - Ülo Niinemets
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1, 51014 Tartu, Estonia
| | - Chunyang Li
- The Nurturing Station for the State Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, Lin'an 311300, Zhejiang, China
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16
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Juvany M, Munné-Bosch S. Sex-related differences in stress tolerance in dioecious plants: a critical appraisal in a physiological context. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:6083-92. [PMID: 26163697 DOI: 10.1093/jxb/erv343] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Sex-related differences in reproductive effort can lead to differences in vegetative growth and stress tolerance. However, do all dioecious plants show sex-related differences in stress tolerance? To what extent can the environmental context and modularity mask sex-related differences in stress tolerance? Finally, to what extent can physiological measurements help us understand secondary sexual dimorphism? This opinion paper aims to answer these three basic questions with special emphasis on developments in research in this area over the last decade. Compelling evidence indicates that dimorphic species do not always show differences in stress tolerance between sexes; and when sex-related differences do occur, they seem to be highly species-specific, with greater stress tolerance in females than males in some species, and the opposite in others. The causes of such sex-related species-specific differences are still poorly understood, and more physiological studies and diversity of plant species that allow comparative analyses are needed. Furthermore, studies performed thus far demonstrate that the expression of dioecy can lead to sex-related differences in physiological traits-from leaf gas exchange to gene expression-but the biological significance of modularity and sectoriality governing such differences has been poorly investigated. Future studies that consider the importance of modularity and sectoriality are essential for unravelling the mechanisms underlying stress adaptation in male and female plants growing in their natural habitat.
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Affiliation(s)
- Marta Juvany
- Departament de Biologia Vegetal, Facultat de Biologia, Universitat de Barcelona, Avinguda Diagonal 643, 08028 Barcelona, Spain
| | - Sergi Munné-Bosch
- Departament de Biologia Vegetal, Facultat de Biologia, Universitat de Barcelona, Avinguda Diagonal 643, 08028 Barcelona, Spain
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Zhou Z, Ma H, Lin K, Zhao Y, Chen Y, Xiong Z, Wang L, Tian B. RNA-seq Reveals Complicated Transcriptomic Responses to Drought Stress in a Nonmodel Tropic Plant, Bombax ceiba L. Evol Bioinform Online 2015; 11:27-37. [PMID: 26157330 PMCID: PMC4479181 DOI: 10.4137/ebo.s20620] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2015] [Revised: 04/09/2015] [Accepted: 04/20/2015] [Indexed: 11/05/2022] Open
Abstract
High-throughput transcriptome provides an unbiased approach for understanding the genetic basis and gene functions in response to different conditions. Here we sequenced RNA-seq libraries derived from a Bombax ceiba L. system under a controlled experiment. As a known medicinal and ornamental plant, B. ceiba grows mainly in hot-dry monsoon rainforests in Southeast Asia and Australia. Due to the specific growth environment, it has evolved a unique system that enables a physiologic response to drought stress. To date, few studies have characterized the genome-wide features of drought endurance in B. ceiba. In this study, we first attempted to characterize and identify the most differentially expressed genes and associated functional pathways under drought treatment and normal condition. Using RNA-seq technology, we generated the first transcriptome of B. ceiba and identified 59 differentially expressed genes with greater than 1,000-fold changes under two conditions. The set of upregulated genes implicates interplay among various pathways: plants growth, ubiquitin-mediated proteolysis, polysaccharides hydrolyzation, oxidative phosphorylation and photosynthesis, etc. In contrast, genes associated with stem growth, cell division, fruit ripening senescence, disease resistance, and proline synthesis are repressed. Notably, key genes of high RPKM levels in drought are AUX1, JAZ, and psbS, which are known to regulate the growth of plants, the resistance against abiotic stress, and the photosynthesis process. Furthermore, 16,656 microsatellite markers and 3,071 single-nucleotide polymorphisms (SNPs) were predicted by in silico methods. The identification and functional annotation of differentially expressed genes, microsatellites, and SNPs represent a major step forward and would serve as a valuable resource for understanding the complexity underlying drought endurance and adaptation in B. ceiba.
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Affiliation(s)
- Zhili Zhou
- Key Laboratory of Biodiversity Conservation in Southwest China, State Forestry Administration, Southwest Forestry University, Kunming, China
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Chinese Academy of Sciences, Kunming, China
| | - Huancheng Ma
- Key Laboratory of Biodiversity Conservation in Southwest China, State Forestry Administration, Southwest Forestry University, Kunming, China
| | - Kevin Lin
- Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC, USA
| | - Youjie Zhao
- Key Laboratory of Biodiversity Conservation in Southwest China, State Forestry Administration, Southwest Forestry University, Kunming, China
| | - Yuan Chen
- Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC, USA
- Division of Infectious Diseases, Department of Medicine, Duke University Medical Center, Durham, NC, USA
| | - Zhi Xiong
- Key Laboratory of Biodiversity Conservation in Southwest China, State Forestry Administration, Southwest Forestry University, Kunming, China
| | - Liuyang Wang
- Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC, USA
| | - Bin Tian
- Key Laboratory of Biodiversity Conservation in Southwest China, State Forestry Administration, Southwest Forestry University, Kunming, China
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Chinese Academy of Sciences, Kunming, China
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Wang J, Zheng R, Bai S, Gao X, Liu M, Yan W. Mongolian Almond (Prunus mongolica Maxim): The Morpho-Physiological, Biochemical and Transcriptomic Response to Drought Stress. PLoS One 2015; 10:e0124442. [PMID: 25893685 PMCID: PMC4404049 DOI: 10.1371/journal.pone.0124442] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2014] [Accepted: 03/13/2015] [Indexed: 11/18/2022] Open
Abstract
Prunus mongolica Maxim, which is widely established in the Gobi Desert, shows extreme tolerance to drought. However, there is a lack of available transcriptomic resources for this species related to its response to water deficiency. To investigate the mechanisms that allow P. mongolica to maintain growth in extremely arid environments, the response of P. mongolica seedlings to drought stress was analyzed using morphological, physiological, biochemical and high-throughput sequencing approaches. We generated 28,713,735 and 26,650,133 raw reads from no-stress control and drought-stressed P. mongolica seedlings, respectively. In total, we obtained 67,352 transcripts with an average length of 874.44 bp. Compared with the no-stress control, 3,365 transcripts were differentially expressed in the drought-stressed seedlings, including 55.75% (1,876 transcripts) up-regulated and 44.25% (1,489 transcripts) down-regulated transcripts. The photosynthesis response showed a decreasing tendency under drought stress, but the changes in the levels of hormones (auxins, cytokinins and abscisic acid) resulted in the closing of stomata and decreased cell enlargement and division; these changes were effective for promoting P. mongolica survival in Gobi Desert. Next, we analyzed the aquaporin and superoxide dismutase gene families due to their importance in plant resistance to drought stress. We found that all of the plasma membrane intrinsic protein transcripts were down-regulated in the drought-stressed treatment, whereas drought did not affect the expression of nodulin intrinsic protein or small basic intrinsic protein transcripts in P. mongolica seedlings. In addition, activation of iron superoxide dismutase transcription and enhanced transcription of manganese superoxide dismutase were observed in P. mongolica to promote tolerance of drought stress. This study identified drought response genes in P. mongolica seedlings. Our results provide a significant contribution to the understanding of how P. mongolica responds to drought stress at the transcriptome level, which may help to elucidate molecular mechanisms associated with the drought response of almond plants.
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Affiliation(s)
- Jǖgang Wang
- College of Forestry, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China
| | - Rong Zheng
- College of Forestry, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China
- College of Life Science and Technology, Inner Mongolia Normal University, Hohhot, Inner Mongolia, China
| | - Shulan Bai
- College of Forestry, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China
| | - Xiaomin Gao
- College of Agriculture, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China
| | - Min Liu
- College of Forestry, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China
| | - Wei Yan
- Institute of Forestry Science of Ordos, Ordos, Inner Mongolia, China
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Jiang H, Zhang S, Feng L, Korpelainen H, Li C. Transcriptional profiling in dioecious plant Populus cathayana reveals potential and sex-related molecular adaptations to solar UV-B radiation. PHYSIOLOGIA PLANTARUM 2015; 153:105-118. [PMID: 24813713 DOI: 10.1111/ppl.12224] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2014] [Revised: 03/13/2014] [Accepted: 04/03/2014] [Indexed: 06/03/2023]
Abstract
There is increasing evidence confirming that dioecious plants have evolved a series of sex-related physiological mechanisms allowing acclimation to environmental stresses, but few studies have attempted to thoroughly uncover the potential molecular regulation underlying these responses. Recently, we found in the dioecious plant, Populus cathayana, that males possess a greater tolerance to enhanced UV-B radiation than do females. To continue this work further, comparative transcriptome analyses were carried out. A total of 362 and 296 differentially expressed genes (DEGs) were detected in males and females, respectively. Similarly, as shown in previous studies, these DEGs were involved in a set of conserved functions and pathways related to UV-B stress, regardless of the sex. On the other hand, sex-related responses via transcriptome remodeling were detected, as changes in sex-related gene expression occurred in some pathways. For example, many DEGs involved in amino acid metabolism were mainly upregulated in males but downregulated in females. In some pathways, DEGs were expressed predominantly or exclusively in one sex. This may directly contribute to sex-related physiological responses. Taken together, our results not only provide strong evidence that males and females have adopted sex-related molecular strategies in response to solar UV-B radiation but also suggest many new insights, in particular into molecular regulation, via sex-biased gene expression. We conclude that these results can further enhance the sustainable exploitation and management of P. cathayana plants.
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Affiliation(s)
- Hao Jiang
- Key Laboratory of Mountain Surface Processes and Ecological Regulation, Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, 610041, China
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20
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Xu E, Fan G, Niu S, Zhao Z, Deng M, Dong Y. Transcriptome-wide profiling and expression analysis of diploid and autotetraploid Paulownia tomentosa × Paulownia fortunei under drought stress. PLoS One 2014; 9:e113313. [PMID: 25405758 PMCID: PMC4236183 DOI: 10.1371/journal.pone.0113313] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2014] [Accepted: 10/22/2014] [Indexed: 12/23/2022] Open
Abstract
Paulownia is a fast-growing deciduous hardwood species native to China, which has high ecological and economic value. In an earlier study, we reported ploidy-dependent differences in Paulownia drought tolerance by the microscopic observations of the leaves. Autotetraploid Paulownia has a higher resistance to drought stress than their diploid relatives. In order to obtain genetic information on molecular mechanisms responses of Paulownia plants to drought, Illumina/Solexa Genome sequencing platform was used to de novo assemble the transcriptomes of leaves from diploid and autotetraploid Paulownia tomentosa × Paulownia fortunei seedlings (PTF2 and PTF4 respectively) grown under control conditions and under drought stress and obtained 98,671 nonredundant unigenes. A comparative transcriptome analysis revealed that hundreds of unigenes were predicted to be involved mainly in ROS-scavenging system, amino acid and carbohydrate metabolism, plant hormone biosynthesis and signal transduction, while these unigenes exhibited differential transcript alteration of the two accessions. This study provides a comprehensive map of how P. tomentosa × P. fortunei responds to drought stress at physiological and molecular levels, which may help in understanding the mechanisms involve in water-deficit response and will be useful for further study of drought tolerance in woody plants.
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Affiliation(s)
- Enkai Xu
- Institute of Paulownia, Henan Agricultural University, Jinshui Area, Zhengzhou, Henan, P.R. China
- College of Forestry, Henan Agricultural University, Jinshui Area, Zhengzhou, Henan, P.R. China
| | - Guoqiang Fan
- Institute of Paulownia, Henan Agricultural University, Jinshui Area, Zhengzhou, Henan, P.R. China
- College of Forestry, Henan Agricultural University, Jinshui Area, Zhengzhou, Henan, P.R. China
- * E-mail:
| | - Suyan Niu
- Institute of Paulownia, Henan Agricultural University, Jinshui Area, Zhengzhou, Henan, P.R. China
- College of Forestry, Henan Agricultural University, Jinshui Area, Zhengzhou, Henan, P.R. China
| | - Zhenli Zhao
- Institute of Paulownia, Henan Agricultural University, Jinshui Area, Zhengzhou, Henan, P.R. China
- College of Forestry, Henan Agricultural University, Jinshui Area, Zhengzhou, Henan, P.R. China
| | - Minjie Deng
- Institute of Paulownia, Henan Agricultural University, Jinshui Area, Zhengzhou, Henan, P.R. China
- College of Forestry, Henan Agricultural University, Jinshui Area, Zhengzhou, Henan, P.R. China
| | - Yanpeng Dong
- Institute of Paulownia, Henan Agricultural University, Jinshui Area, Zhengzhou, Henan, P.R. China
- College of Forestry, Henan Agricultural University, Jinshui Area, Zhengzhou, Henan, P.R. China
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21
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Harfouche A, Meilan R, Altman A. Molecular and physiological responses to abiotic stress in forest trees and their relevance to tree improvement. TREE PHYSIOLOGY 2014; 34:1181-98. [PMID: 24695726 DOI: 10.1093/treephys/tpu012] [Citation(s) in RCA: 74] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Abiotic stresses, such as drought, salinity and cold, are the major environmental stresses that adversely affect tree growth and, thus, forest productivity, and play a major role in determining the geographic distribution of tree species. Tree responses and tolerance to abiotic stress are complex biological processes that are best analyzed at a systems level using genetic, genomic, metabolomic and phenomic approaches. This will expedite the dissection of stress-sensing and signaling networks to further support efficient genetic improvement programs. Enormous genetic diversity for stress tolerance exists within some forest-tree species, and due to advances in sequencing technologies the molecular genetic basis for this diversity has been rapidly unfolding in recent years. In addition, the use of emerging phenotyping technologies extends the suite of traits that can be measured and will provide us with a better understanding of stress tolerance. The elucidation of abiotic stress-tolerance mechanisms will allow for effective pyramiding of multiple tolerances in a single tree through genetic engineering. Here we review recent progress in the dissection of the molecular basis of abiotic stress tolerance in forest trees, with special emphasis on Populus, Pinus, Picea, Eucalyptus and Quercus spp. We also outline practices that will enable the deployment of trees engineered for abiotic stress tolerance to land owners. Finally, recommendations for future work are discussed.
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Affiliation(s)
- Antoine Harfouche
- Department for Innovation in Biological, Agro-food and Forest systems, University of Tuscia, Via S. Camillo de Lellis, Viterbo 01100, Italy
| | - Richard Meilan
- Department of Forestry and Natural Resources, Purdue University, 715 West State Street, West Lafayette, IN 47907-2061, USA
| | - Arie Altman
- Faculty of Agricultural, Food and Environmental Quality Sciences, The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, PO Box 12, Rehovot 76100, Israel
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Li X, Yang Y, Sun X, Lin H, Chen J, Ren J, Hu X, Yang Y. Comparative physiological and proteomic analyses of poplar (Populus yunnanensis) plantlets exposed to high temperature and drought. PLoS One 2014; 9:e107605. [PMID: 25225913 PMCID: PMC4167240 DOI: 10.1371/journal.pone.0107605] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2014] [Accepted: 08/11/2014] [Indexed: 01/13/2023] Open
Abstract
Plantlets of Populus yunnanensis Dode were examined in a greenhouse for 48 h to analyze their physiological and proteomic responses to sustained heat, drought, and combined heat and drought. Compared with the application of a single stress, simultaneous treatment with both stresses damaged the plantlets more heavily. The plantlets experienced two apparent response stages under sustained heat and drought. During the first stage, malondialdehyde and reactive oxygen species (ROS) contents were induced by heat, but many protective substances, including antioxidant enzymes, proline, abscisic acid (ABA), dehydrin, and small heat shock proteins (sHSPs), were also stimulated. The plants thus actively defended themselves against stress and exhibited few pathological morphological features, most likely because a new cellular homeostasis was established through the collaborative operation of physiological and proteomic responses. During the second stage, ROS homeostasis was overwhelmed by substantial ROS production and a sharp decline in antioxidant enzyme activities, while the synthesis of some protective elements, such as proline and ABA, was suppressed. As a result, photosynthetic levels in P. yunnanensis decreased sharply and buds began to die, despite continued accumulation of sHSPs and dehydrin. This study supplies important information about the effects of extreme abiotic environments on woody plants.
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Affiliation(s)
- Xiong Li
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
- Plant Germplasm and Genomics Center, The Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yunqiang Yang
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
- Plant Germplasm and Genomics Center, The Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xudong Sun
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
- Plant Germplasm and Genomics Center, The Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
| | - Huaming Lin
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
- Plant Germplasm and Genomics Center, The Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Jinhui Chen
- Key Laboratory of Forest Genetics & Biotechnology, Nanjing Forestry University, Nanjing, China
| | - Jian Ren
- Department of Grassland Science, Yunnan Agricultural University, Kunming, China
| | - Xiangyang Hu
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
- Plant Germplasm and Genomics Center, The Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
| | - Yongping Yang
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
- Plant Germplasm and Genomics Center, The Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
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Zhang J, Feng J, Lu J, Yang Y, Zhang X, Wan D, Liu J. Transcriptome differences between two sister desert poplar species under salt stress. BMC Genomics 2014; 15:337. [PMID: 24886148 PMCID: PMC4035067 DOI: 10.1186/1471-2164-15-337] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2013] [Accepted: 04/30/2014] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Populus euphratica Oliv and P. pruinosa Schrenk (Salicaceae) both grow in dry desert areas with high summer temperatures. However, P. euphratica is distributed in dry deserts with deep underground water whereas P. pruinosa occurs in deserts in which there is underground water close to the surface. We therefore hypothesized that these two sister species may have evolved divergent regulatory and metabolic pathways during their interaction with different salt habitats and other stresses. To test this hypothesis, we compared transcriptomes from callus exposed to 24 h of salt stress and control callus samples from both species and identified differentially expressed genes (DEGs) and alternative splicing (AS) events that had occurred under salt stress. RESULTS A total of 36,144 transcripts were identified and 1430 genes were found to be differentially expressed in at least one species in response to salt stress. Of these DEGs, 884 and 860 were identified in P. euphratica and P. pruinosa, respectively, while 314 DEGs were common to both species. On the basis of parametric analysis of gene set enrichment, GO enrichment in P. euphratica was found to be significantly different from that in P. pruinosa. Numerous genes involved in hormone biosynthesis, transporters and transcription factors showed clear differences between the two species in response to salt stress. We also identified 26,560 AS events which were mapped to 8380 poplar genomic loci from four libraries. GO enrichments for genes undergoing AS events in P. euphratica differed significantly from those in P. pruinosa. CONCLUSIONS A number of salt-responsive genes in both P. euphratica and P. pruinosa were identified and candidate genes with potential roles in the salinity adaptation were proposed. Transcriptome comparisons of two sister desert poplar species under salt stress suggest that these two species may have developed different genetic pathways in order to adapt to different desert salt habitats. The DEGs that were found to be common to both species under salt stress may be especially important for future genetic improvement of cultivated poplars or other crops through transgenic approaches in order to increase tolerance of saline soil conditions.
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Affiliation(s)
- Jian Zhang
- />State Key Laboratory of Grassland and Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, 730000 Gansu China
| | - Jianju Feng
- />State Key Laboratory of Grassland and Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, 730000 Gansu China
- />Xinjiang Production & Construction Corps Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin, College of Plant Science, Tarim University, Alar 843300 Xinjiang, China
| | - Jing Lu
- />State Key Laboratory of Grassland and Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, 730000 Gansu China
| | - Yongzhi Yang
- />State Key Laboratory of Grassland and Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, 730000 Gansu China
| | - Xu Zhang
- />State Key Laboratory of Grassland and Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, 730000 Gansu China
| | - Dongshi Wan
- />State Key Laboratory of Grassland and Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, 730000 Gansu China
| | - Jianquan Liu
- />State Key Laboratory of Grassland and Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, 730000 Gansu China
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Randriamanana TR, Nybakken L, Lavola A, Aphalo PJ, Nissinen K, Julkunen-Tiitto R. Sex-related differences in growth and carbon allocation to defence in Populus tremula as explained by current plant defence theories. TREE PHYSIOLOGY 2014; 34:471-87. [PMID: 24852570 DOI: 10.1093/treephys/tpu034] [Citation(s) in RCA: 54] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Plant defence theories have recently evolved in such a way that not only the quantity but also the quality of mineral nutrients is expected to influence plant constitutive defence. Recently, an extended prediction derived from the protein competition model (PCM) suggested that nitrogen (N) limitation is more important for the production of phenolic compounds than phosphorus (P). We aimed at studying sexual differences in the patterns of carbon allocation to growth and constitutive defence in relation to N and P availability in Populus tremula L. seedlings. We compared the gender responses in photosynthesis, growth and whole-plant allocation to phenolic compounds at different combination levels of N and P, and studied how they are explained by the main plant defence theories. We found no sexual differences in phenolic concentrations, but interestingly, slow-growing females had higher leaf N concentration than did males, and genders differed in their allocation priority. There was a trade-off between growth and the production of flavonoid-derived phenylpropanoids on one hand, and between the production of salicylates and flavonoid-derived phenylpropanoids on the other. Under limited nutrient conditions, females prioritized mineral nutrient acquisition, flavonoid and condensed tannin (CT) production, while males invested more in above-ground biomass. Salicylate accumulation followed the growth differentiation balance hypothesis as low N mainly decreased the production of leaf and stem salicylate content while the combination of both low N and low P increased the amount of flavonoids and CTs allocated to leaves and to a lesser extent stems, which agrees with the PCM. We suggest that such a discrepancy in the responses of salicylates and flavonoid-derived CTs is linked to their clearly distinct biosynthetic origins and/or their metabolic costs.
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Affiliation(s)
- Tendry R Randriamanana
- Natural Products Research Laboratories, Department of Biology, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland
| | - Line Nybakken
- Natural Products Research Laboratories, Department of Biology, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland Department of Ecology and Natural Resource Management, Norwegian University of Life Sciences, Ås, Norway
| | - Anu Lavola
- Natural Products Research Laboratories, Department of Biology, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland
| | - Pedro J Aphalo
- Department of Biosciences, University of Helsinki, Helsinki, Finland
| | - Katri Nissinen
- Natural Products Research Laboratories, Department of Biology, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland
| | - Riitta Julkunen-Tiitto
- Natural Products Research Laboratories, Department of Biology, University of Eastern Finland, P.O. Box 111, 80101 Joensuu, Finland
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Shanker AK, Maheswari M, Yadav SK, Desai S, Bhanu D, Attal NB, Venkateswarlu B. Drought stress responses in crops. Funct Integr Genomics 2014; 14:11-22. [PMID: 24408129 DOI: 10.1007/s10142-013-0356-x] [Citation(s) in RCA: 105] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2013] [Revised: 12/04/2013] [Accepted: 12/18/2013] [Indexed: 01/09/2023]
Abstract
Among the effects of impending climate change, drought will have a profound impact on crop productivity in the future. Response to drought stress has been studied widely, and the model plant Arabidopsis has guided the studies on crop plants with genome sequence information viz., rice, wheat, maize and sorghum. Since the value of functions of genes, dynamics of pathways and interaction of networks for drought tolerance in plants can only be judged by evidence from field performance, this mini-review provides a research update focussing on the current developments on the response to drought in crop plants. Studies in Arabidopsis provide the basis for interpreting the available information in a systems biology perspective. In particular, the elucidation of the mechanism of drought stress response in crops is considered from evidence-based outputs emerging from recent omic studies in crops.
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Affiliation(s)
- Arun K Shanker
- Division of Crop Sciences, Central Research Institute for Dryland Agriculture (CRIDA), Santoshnagar, Saidabad P.O, Hyderabad, 500-059, India,
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Chen J, Duan B, Wang M, Korpelainen H, Li C. Intra- and inter-sexual competition ofPopulus cathayanaunder different watering regimes. Funct Ecol 2013. [DOI: 10.1111/1365-2435.12180] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Juan Chen
- Chengdu Institute of Biology; Chinese Academy of Sciences; PO Box 416 Chengdu 610041 China
- Key Laboratory of Bio-resources and Eco-environment of Ministry of Education; College of Life Sciences; Sichuan University; Chengdu 610064 China
- Mianyang Normal University; Mianyang 621000 China
| | - Baoli Duan
- Key Laboratory of Mountain Surface Processes and Ecological Regulation; Institute of Mountain Hazards and Environment; Chinese Academy of Sciences; Chengdu 610041 China
| | - Maolin Wang
- Key Laboratory of Bio-resources and Eco-environment of Ministry of Education; College of Life Sciences; Sichuan University; Chengdu 610064 China
| | - Helena Korpelainen
- Department of Agricultural Sciences; University of Helsinki; PO Box 27 Helsinki FI-00014 Finland
| | - Chunyang Li
- Key Laboratory of Mountain Surface Processes and Ecological Regulation; Institute of Mountain Hazards and Environment; Chinese Academy of Sciences; Chengdu 610041 China
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