1
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Martinez Fernandez J, Haji Seyed Javadi A, Teat SJ, Cundari TR, Tilley TD. Synthetically Reversible, Proton-Mediated Nitrite N-O Bond Cleavage at a Dicopper Site. J Am Chem Soc 2024; 146:34962-34969. [PMID: 39655620 DOI: 10.1021/jacs.4c14642] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2024]
Abstract
A monocationic dicopper(I,I) nitrite complex [Cu2(μ-κ1:κ1-O2N)DPFN][NTf2] (2) (DPFN = 2,7-bis(fluoro-di(2-pyridyl)methyl)-1,8-naphthyridine, NTf2- = N(SO2CF3)2-), was synthesized by treatment of a dicopper acetonitrile complex, [Cu2(μ-MeCN)DPFN][NTf2]2 (1), with tetrabutylammonium nitrite ([nBu4N][NO2]). DFT calculations indicate that 2 is one of three linkage isomers that are close in energy and presumably accessible in solution. Reaction of the μ-κ1:κ1-O2N complex with p-TolSH produces nitrous acid (HONO) and the corresponding dicopper thiolate species via an acid-base exchange reaction. Notably, treatment of 2 with HNTf2 results in N-O bond cleavage in the putative, HONO-ligated complex to form the more thermodynamically favorable nitrosyl-bridged dicopper complex [Cu2(μ-NO)(μ-OH)DPFN][NTf2]2 (4). This scission can be reversed via deprotonation of the hydroxy ligand with KOtBu. X-ray diffraction studies confirmed the solid-state molecular structures of 2 and 4. DFT calculations were used to construct a reaction coordinate diagram detailing formation of the μ-NO complex and to describe its electronic structure. The nitrosyl ligand in 4 is chemically labile, as demonstrated by its ready displacement in reactions with CO or NO2-.
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Affiliation(s)
- Jose Martinez Fernandez
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Alireza Haji Seyed Javadi
- Department of Chemistry, Center for Advanced Scientific Computing and Modeling (CASCaM), University of North Texas, Denton, Texas 76203, United States
| | - Simon J Teat
- Advanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Thomas R Cundari
- Department of Chemistry, Center for Advanced Scientific Computing and Modeling (CASCaM), University of North Texas, Denton, Texas 76203, United States
| | - T Don Tilley
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
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2
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Ferreira MP, Castro CB, Honorato J, He S, Gonçalves Guimarães Júnior W, Esmieu C, Castellano EE, de Moura AF, Truzzi DR, Nascimento OR, Simonneau A, Marques Netto CGC. Biomimetic catalysis of nitrite reductase enzyme using copper complexes in chemical and electrochemical reduction of nitrite. Dalton Trans 2023; 52:11254-11264. [PMID: 37526523 DOI: 10.1039/d3dt01091k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/02/2023]
Abstract
Copper nitrite reductase mimetics were synthesized using three new tridentate ligands sharing the same N,N,N motif of coordination. The ligands were based on L-proline modifications, attaching a pyridine and a triazole to the pyrrolidine ring, and differ by a pendant group (R = phenyl, n-butyl and n-propan-1-ol). All complexes coordinate nitrite, as evidenced by cyclic voltammetry, UV-Vis, FTIR and electron paramagnetic resonance (EPR) spectroscopies. The coordination mode of nitrite was assigned by FTIR and EPR as κ2O chelate mode. Upon acidification, EPR experiments indicated a shift from chelate to monodentate κO mode, and 15N NMR experiments of a Zn2+ analogue, suggested that the related Cu(II) nitrous acid complex may be reasonably stable in solution, but in equilibrium with free HONO under non catalytic conditions. Reduction of nitrite to NO was performed both chemically and electrocatalytically, observing the highest catalytic activities for the complex with n-propan-1-ol as pendant group. These results support the hypothesis that a hydrogen bond moiety in the secondary coordination sphere may aid the protonation step.
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Affiliation(s)
- Millena P Ferreira
- Department of Chemistry, Universidade Federal de São Carlos (UFSCar), Rod. Washington Luiz, km 235 s/n, CEP 13565905 São Carlos, SP, Brazil.
| | - Caio B Castro
- Department of Chemistry, Universidade Federal de São Carlos (UFSCar), Rod. Washington Luiz, km 235 s/n, CEP 13565905 São Carlos, SP, Brazil.
| | - João Honorato
- Insitututo de Química, Departamento de Bioquímica, Universidade de São Paulo (USP), Av. Prof. Dr. Lineu Prestes, 748, CEP 05513-970 São Paulo, SP, Brazil
- Instituto de Física, Universidade de São Paulo (USP), Av.João Dagnone, 1100, CEP 13563-120, São Carlos, SP, Brazil
| | - Sheng He
- Department of Chemistry, Emory University, 1515 Dickey Drive, 30322 Atlanta, GA, USA
| | - Walber Gonçalves Guimarães Júnior
- Department of Chemistry, Universidade Federal de São Carlos (UFSCar), Rod. Washington Luiz, km 235 s/n, CEP 13565905 São Carlos, SP, Brazil.
| | - Charlene Esmieu
- LCC-CNRS, Universite de Toulouse, CNRS, UPS, 205 route de Narbonne, F31077 Toulouse cedex 4, France
| | - Eduardo E Castellano
- Instituto de Física, Universidade de São Paulo (USP), Av.João Dagnone, 1100, CEP 13563-120, São Carlos, SP, Brazil
| | - André F de Moura
- Department of Chemistry, Universidade Federal de São Carlos (UFSCar), Rod. Washington Luiz, km 235 s/n, CEP 13565905 São Carlos, SP, Brazil.
| | - Daniela R Truzzi
- Insitututo de Química, Departamento de Bioquímica, Universidade de São Paulo (USP), Av. Prof. Dr. Lineu Prestes, 748, CEP 05513-970 São Paulo, SP, Brazil
| | - Otaciro R Nascimento
- Instituto de Física, Universidade de São Paulo (USP), Av.João Dagnone, 1100, CEP 13563-120, São Carlos, SP, Brazil
| | - Antoine Simonneau
- LCC-CNRS, Universite de Toulouse, CNRS, UPS, 205 route de Narbonne, F31077 Toulouse cedex 4, France
| | - Caterina G C Marques Netto
- Department of Chemistry, Universidade Federal de São Carlos (UFSCar), Rod. Washington Luiz, km 235 s/n, CEP 13565905 São Carlos, SP, Brazil.
- Department of Chemistry, Emory University, 1515 Dickey Drive, 30322 Atlanta, GA, USA
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3
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van Langevelde P, Engbers S, Buda F, Hetterscheid DGH. Elucidation of the Electrocatalytic Nitrite Reduction Mechanism by Bio-Inspired Copper Complexes. ACS Catal 2023; 13:10094-10103. [PMID: 37560187 PMCID: PMC10407843 DOI: 10.1021/acscatal.3c01989] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 06/26/2023] [Indexed: 08/11/2023]
Abstract
Mononuclear copper complexes relevant to the active site of copper nitrite reductases (CuNiRs) are known to be catalytically active for the reduction of nitrite. Yet, their catalytic mechanism has thus far not been resolved. Here, we provide a complete description of the electrocatalytic nitrite reduction mechanism of a bio-inspired CuNiR catalyst Cu(tmpa) (tmpa = tris(2-pyridylmethyl)amine) in aqueous solution. Through a combination of electrochemical studies, reaction kinetics, and density functional theory (DFT) computations, we show that the protonation steps take place in a stepwise manner and are decoupled from electron transfer. The rate-determining step is a general acid-catalyzed protonation of a copper-ligated nitrous acid (HNO2) species. In view of the growing urge to convert nitrogen-containing compounds, this work provides principal reaction parameters for efficient electrochemical nitrite reduction. This contributes to the investigation and development of nitrite reduction catalysts, which is crucial to restore the biogeochemical nitrogen cycle.
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Affiliation(s)
| | - Silène Engbers
- Leiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands
| | - Francesco Buda
- Leiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands
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4
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Rey JM, Movilla F, Suárez SA, Di Salvo F. Synthesis, structural and electrochemical properties of a new family of amino-acid-based coordination complexes. ACTA CRYSTALLOGRAPHICA SECTION B, STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS 2022; 78:520-536. [PMID: 35702969 DOI: 10.1107/s2052520622003912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Accepted: 04/10/2022] [Indexed: 06/15/2023]
Abstract
Metalloproteins involved in oxidation-reduction processes in metabolism are fundamental for the wellbeing of every organism. The use of amino-acid-based compounds as ligands for the construction of biomimetic coordination systems represents a promising alternative for the development of new catalysts. Herein is presented a new family of copper, zinc and nickel coordination compounds, which show four-, five- and six- coordination geometries, synthesized using Schiff base ligands obtained from the amino acids L-alanine and L-phenylalanine. Structural analysis and property studies were performed using single-crystal X-ray diffraction data, spectroscopic and electrochemical experiments and DFT calculations. The analysis of the molecular and supramolecular architectures showed that the non-covalent interactions developed in the systems, together with the identity of the metal and the amino acid backbone, are determinants for the formation of the complexes and the stabilization of the resultant geometries. The CuII complexes were tested as candidates for the electrochemical conversion reduction of nitrite to NO, finding that the five-coordinate L-phenylalanine complex is the most suitable. Finally, some insights into the rational design of ligands for the construction of biomimetic complexes are suggested.
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Affiliation(s)
- Juan Manuel Rey
- Departamento de Química Inorgánica, Analítica y Química Física, CONICET-Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Güiraldes 2160, Ciudad Universitaria, Pabellón 2, Piso 3, Ciudad de Buenos Aires, C1428EHA, Argentina
| | - Federico Movilla
- Departamento de Química Inorgánica, Analítica y Química Física, CONICET-Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Güiraldes 2160, Ciudad Universitaria, Pabellón 2, Piso 3, Ciudad de Buenos Aires, C1428EHA, Argentina
| | - Sebastián Angel Suárez
- Departamento de Química Inorgánica, Analítica y Química Física, CONICET-Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Güiraldes 2160, Ciudad Universitaria, Pabellón 2, Piso 3, Ciudad de Buenos Aires, C1428EHA, Argentina
| | - Florencia Di Salvo
- Departamento de Química Inorgánica, Analítica y Química Física, CONICET-Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Güiraldes 2160, Ciudad Universitaria, Pabellón 2, Piso 3, Ciudad de Buenos Aires, C1428EHA, Argentina
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5
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Borowski P, Kutniewska SE, Kamiński R, Krówczyński A, Schaniel D, Jarzembska KN. Exploring Photoswitchable Properties of Two Nitro Nickel(II) Complexes with ( N, N, O)-Donor Ligands and Their Copper(II) Analogues. Inorg Chem 2022; 61:6624-6640. [PMID: 35430817 PMCID: PMC9066408 DOI: 10.1021/acs.inorgchem.2c00526] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Patryk Borowski
- Department of Chemistry, University of Warsaw, Żwirki i Wigury 101, 02-089 Warsaw, Poland
| | - Sylwia E. Kutniewska
- Department of Chemistry, University of Warsaw, Żwirki i Wigury 101, 02-089 Warsaw, Poland
| | - Radosław Kamiński
- Department of Chemistry, University of Warsaw, Żwirki i Wigury 101, 02-089 Warsaw, Poland
| | - Adam Krówczyński
- Department of Chemistry, University of Warsaw, Żwirki i Wigury 101, 02-089 Warsaw, Poland
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6
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Lee H, Kang SB, Yoo H, Lee HR, Sun JY. Reversible Crosslinking of Polymer/Metal-Ion Complexes for a Microfluidic Switch. ACS OMEGA 2021; 6:35297-35306. [PMID: 34984261 PMCID: PMC8717383 DOI: 10.1021/acsomega.1c04055] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Accepted: 12/03/2021] [Indexed: 05/30/2023]
Abstract
The importance of chitosan has been strongly emphasized in literature because this natural polymer could not only remove heavy metal ions in water but also have the potential for recyclability. However, reversible phase transition and its dynamics, which are highlighting areas of a recycle process, have not been studied sufficiently. Here, we present dynamic studies of the dissolution as well as the gelation of a physically crosslinked chitosan hydrogel. Specifically, a one-dimensional gel growth system and an acetate buffer solution were prepared for the precise analysis of the dominant factors affecting a phase transition. The dissolution rate was found to be regulated by three major factors of the pH level, Cu2+, and NO2 -, while the gelation rate was strongly governed by the concentration of OH-. Apart from the gelation rate, the use of Cu2+ led to the rapid realization of gel characteristics. The results here provide strategies for process engineering, ultimately to determine the phase-transition rates. In addition, a microfluidic switch was successfully operated based on a better understanding of the reversible crosslinking of the chitosan hydrogel. Rapid gelation was required to close the channel, and a quick switchover was achieved by a dissolution enhancement strategy. As a result, factors that regulated the rates of gelation or dissolution were found to be useful to operate the fluidic switch.
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Affiliation(s)
- Hojun Lee
- Department of Materials
Science and Engineering, Seoul National
University, 1 Gwanak-ro, Gwanak-gu, 151-744 Seoul, Republic of Korea
| | - Soon-Bo Kang
- Department of Materials
Science and Engineering, Seoul National
University, 1 Gwanak-ro, Gwanak-gu, 151-744 Seoul, Republic of Korea
| | - Hyunjae Yoo
- Department of Materials
Science and Engineering, Seoul National
University, 1 Gwanak-ro, Gwanak-gu, 151-744 Seoul, Republic of Korea
| | - Hae-Ryung Lee
- Department of Materials
Science and Engineering, Seoul National
University, 1 Gwanak-ro, Gwanak-gu, 151-744 Seoul, Republic of Korea
| | - Jeong-Yun Sun
- Department of Materials
Science and Engineering, Seoul National
University, 1 Gwanak-ro, Gwanak-gu, 151-744 Seoul, Republic of Korea
- Research
Institute of Advanced Materials (RIAM), Seoul National University, 1 Gwanak-ro, Gwanak-gu, 151-742 Seoul, Republic of Korea
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7
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Shi K, Mathivathanan L, Boudalis AK, Turek P, Chakraborty I, Raptis RG. Nitrite Reduction by Trinuclear Copper Pyrazolate Complexes: An Example of a Catalytic, Synthetic Polynuclear NO Releasing System. Inorg Chem 2019; 58:7537-7544. [DOI: 10.1021/acs.inorgchem.9b00748] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Kaige Shi
- Department of Chemistry and Biochemistry and Biomolecular Sciences Institute, Florida International University, 11200 SW Eighth Street, Miami, Florida 33199, United States
| | - Logesh Mathivathanan
- Department of Chemistry and Biochemistry and Biomolecular Sciences Institute, Florida International University, 11200 SW Eighth Street, Miami, Florida 33199, United States
| | - Athanassios K. Boudalis
- Institut de Chimie UMR 7177/Université de Strasbourg 4, rue Blaise Pascal/CS 90032, F-67081 Strasbourg CEDEX, France
| | - Philippe Turek
- Institut de Chimie UMR 7177/Université de Strasbourg 4, rue Blaise Pascal/CS 90032, F-67081 Strasbourg CEDEX, France
| | - Indranil Chakraborty
- Department of Chemistry and Biochemistry and Biomolecular Sciences Institute, Florida International University, 11200 SW Eighth Street, Miami, Florida 33199, United States
| | - Raphael G. Raptis
- Department of Chemistry and Biochemistry and Biomolecular Sciences Institute, Florida International University, 11200 SW Eighth Street, Miami, Florida 33199, United States
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8
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Cioncoloni G, Roger I, Wheatley PS, Wilson C, Morris RE, Sproules S, Symes MD. Proton-Coupled Electron Transfer Enhances the Electrocatalytic Reduction of Nitrite to NO in a Bioinspired Copper Complex. ACS Catal 2018. [DOI: 10.1021/acscatal.8b00361] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Giacomo Cioncoloni
- WestCHEM, School of Chemistry, University of Glasgow, University Avenue, Glasgow G12 8QQ, United Kingdom
| | - Isolda Roger
- WestCHEM, School of Chemistry, University of Glasgow, University Avenue, Glasgow G12 8QQ, United Kingdom
| | - Paul S. Wheatley
- EaStCHEM School of Chemistry, University of St Andrews, Purdie Building, St Andrews KY16 9ST, United Kingdom
| | - Claire Wilson
- WestCHEM, School of Chemistry, University of Glasgow, University Avenue, Glasgow G12 8QQ, United Kingdom
| | - Russell E. Morris
- EaStCHEM School of Chemistry, University of St Andrews, Purdie Building, St Andrews KY16 9ST, United Kingdom
| | - Stephen Sproules
- WestCHEM, School of Chemistry, University of Glasgow, University Avenue, Glasgow G12 8QQ, United Kingdom
| | - Mark D. Symes
- WestCHEM, School of Chemistry, University of Glasgow, University Avenue, Glasgow G12 8QQ, United Kingdom
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9
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Dias L, Bekhti N, Kuznetsov ML, Ferreira JAB, Bacariza MC, da Silva JAL. Nitrite Reduction in Aqueous Solution Mediated by Amavadin Homologues: N2O Formation and Water Oxidation. Chemistry 2018; 24:2474-2482. [DOI: 10.1002/chem.201705385] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2017] [Indexed: 12/24/2022]
Affiliation(s)
- Lúcia Dias
- Centro de Química Estrutural; Instituto Superior Técnico; Universidade de Lisboa; Av. Rovisco Pais, 1 1049-001 Lisbon Portugal
| | - Nihel Bekhti
- Centro de Química Estrutural; Instituto Superior Técnico; Universidade de Lisboa; Av. Rovisco Pais, 1 1049-001 Lisbon Portugal
| | - Maxim L. Kuznetsov
- Centro de Química Estrutural; Instituto Superior Técnico; Universidade de Lisboa; Av. Rovisco Pais, 1 1049-001 Lisbon Portugal
| | - José A. B. Ferreira
- Centro de Química Estrutural; Instituto Superior Técnico; Universidade de Lisboa; Av. Rovisco Pais, 1 1049-001 Lisbon Portugal
| | - Maria C. Bacariza
- Centro de Química Estrutural; Instituto Superior Técnico; Universidade de Lisboa; Av. Rovisco Pais, 1 1049-001 Lisbon Portugal
| | - José Armando L. da Silva
- Centro de Química Estrutural; Instituto Superior Técnico; Universidade de Lisboa; Av. Rovisco Pais, 1 1049-001 Lisbon Portugal
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10
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Schaniel D, Bendeif EE, Woike T, Böttcher HC, Pillet S. Wavelength-selective photoisomerisation of nitric oxide and nitrite in a rhodium complex. CrystEngComm 2018. [DOI: 10.1039/c8ce01345d] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Photoinduced linkage isomers (PLIs) of NO and NO2− are selectively generated by an appropriate choice of irradiation wavelength at low temperature within the same molecular complex [Rh(NO)(NO2)2(But2PH)2].
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Affiliation(s)
- D. Schaniel
- Université de Lorraine
- CNRS
- CRM2
- F-54000 Nancy
- France
| | | | - T. Woike
- Université de Lorraine
- CNRS
- CRM2
- F-54000 Nancy
- France
| | - H.-C. Böttcher
- Departement Chemie der Ludwig-Maximilians-Universität
- 81377 Munich
- Germany
| | - S. Pillet
- Université de Lorraine
- CNRS
- CRM2
- F-54000 Nancy
- France
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