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Kohout P, Sudová R, Odriozola I, Kvasničková J, Petružálková M, Hadincová V, Krahulec F, Pecháčková S, Skálová H, Herben T. Accumulation of pathogens in soil microbiome can explain long-term fluctuations of legumes in a grassland community. THE NEW PHYTOLOGIST 2024. [PMID: 39101271 DOI: 10.1111/nph.20031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2024] [Accepted: 07/18/2024] [Indexed: 08/06/2024]
Abstract
All plant populations fluctuate in time. Apart from the dynamics imposed by external forces such as climate, these fluctuations can be driven by endogenous processes taking place within the community. In this study, we aimed to identify potential role of soil-borne microbial communities in driving endogenous fluctuations of plant populations. We combined a unique, 35-yr long abundance data of 11 common plant species from a species-rich mountain meadow with development of their soil microbiome (pathogenic fungi, arbuscular mycorrhizal fungi and oomycetes) observed during 4 yr of experimental cultivation in monocultures. Plant species which abundance fluctuated highly in the field (particularly legumes) accumulated plant pathogens in their soil mycobiome. We also identified increasing proportion of mycoparasitic fungi under highly fluctuating legume species, which may indicate an adaptation of these species to mitigate the detrimental effects of pathogens. Our study documented that long-term fluctuations in the abundance of plant species in grassland communities can be explained by the accumulation of plant pathogens in plant-soil microbiome. By contrast, we found little evidence of the role of mutualists in plant population fluctuations. These findings offer new insights for understanding mechanisms driving both long-term vegetation dynamics and patterns of species coexistence and richness.
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Affiliation(s)
- Petr Kohout
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia
- Faculty of Science, Charles University in Prague, Albertov 6, 128 00, Prague, Czechia
| | - Radka Sudová
- Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia
| | - Iñaki Odriozola
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia
| | - Jana Kvasničková
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia
- Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia
| | - Markéta Petružálková
- Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia
| | - Věroslava Hadincová
- Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia
| | - František Krahulec
- Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia
| | - Sylvie Pecháčková
- Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia
| | - Hana Skálová
- Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia
| | - Tomáš Herben
- Faculty of Science, Charles University in Prague, Albertov 6, 128 00, Prague, Czechia
- Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia
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2
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Gerstner BP, Laport RG, Rudgers JA, Whitney KD. Plant-soil microbe feedbacks depend on distance and ploidy in a mixed cytotype population of Larrea tridentata. AMERICAN JOURNAL OF BOTANY 2024; 111:e16298. [PMID: 38433501 DOI: 10.1002/ajb2.16298] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2023] [Revised: 12/19/2023] [Accepted: 12/19/2023] [Indexed: 03/05/2024]
Abstract
PREMISE Theory predicts that mixed ploidy populations should be short-lived due to strong fitness disadvantages for the rare ploidy. However, mixed ploidy populations are common, suggesting that the fitness costs for rare ploidies are counterbalanced by ecological benefits that emerge when rare. We investigated whether differences in ecological interactions with soil microbes help to maintain a tetraploid-hexaploid population of Larrea tridentata (creosote bush) in the Sonoran Desert, California, United States, where prior work documented ploidy-specific root-associated microbes. METHODS We used a plant-soil feedback (PSF) experiment to test whether host-specific soil microbes can alter the outcomes of intraploidy vs. interploidy competition. Host-specific soil microbes can build up over time; thus, distance from a host plant can affect the fitness of nearby plants. RESULTS Seedlings grown in soils from near plants of a different ploidy produced greater biomass relative to seedlings grown in soils from near plants of the same ploidy. Moreover, seedlings grown in soils from near plants of a different ploidy produced more biomass than those grown in soils that were farther from plants of a different ploidy. These results suggest that the ecological consequences of PSF may facilitate the persistence of mixed ploidy populations. CONCLUSIONS This is the first evidence, to our knowledge, that is consistent with plant-soil microbe feedback as a viable mechanism to maintain the coexistence of multiple ploidy levels in a single population.
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Affiliation(s)
- Benjamin P Gerstner
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Robert G Laport
- Department of Biology, The College of Idaho, Caldwell, ID, 83605, USA
| | - Jennifer A Rudgers
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Kenneth D Whitney
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
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3
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Li Z, Wei J, He W, Cao X, Zhou X, Tian Q. Effect of plant-soil system on the restoration of community stability after wildfire in the northeast margin of Qinghai-Tibet plateau. Sci Rep 2024; 14:10706. [PMID: 38729979 PMCID: PMC11087542 DOI: 10.1038/s41598-024-61621-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2024] [Accepted: 05/07/2024] [Indexed: 05/12/2024] Open
Abstract
Wildfires, as an environmental filter, are pivotal ecological disturbances that reshape plant communities and soil dynamics, playing a crucial role in regulating biogeographic patterns and ecosystem services. In this study, we aim to explore the effects of wildfires on forest ecosystems, specifically focusing on the plant-soil feedback mechanisms within the northeastern margin of the Qinghai-Tibet Plateau (QTP). Utilizing Partial Least Squares Path Modeling (PLS-PM), we investigated the interrelationships among soil physicochemical properties, enzyme activities, species diversity, and community stability at varying post-fire recovery stages (5, 15, and 23 years). Results indicated that in the early recovery stages, rapid changes in soil properties such as decreased pH (p < 0.001) and increased nutrient availability facilitate the emergence of early successional species with high resource utilization traits. As the ecosystem evolved toward a climax community, the soil and vegetation exhibit increased stability. Furthermore, soil enzyme activities displayed dynamic patterns that corresponded with changes in soil nutrient content, directly influencing the regeneration and diversity of plant communities. Importantly, our study documented a transition in the influence of soil properties on community stability from direct positive effects in initial recovery phases to negative impacts in later stages, while indirect benefits accrue through increased species diversity and enzyme activity. Vegetation composition and structure changed dynamically with recovery time during community succession. Plant nutrient absorption and accumulation affected nutrient dynamics in the soil, influencing plant regeneration, distribution, and diversity. Our results underscore the complex interactions between soil and vegetation that drive the recovery dynamics post-wildfire, highlighting the resilience of forest ecosystems to fire disturbances. This study contributes to the understanding of post-fire recovery processes and offers valuable insights for the management and restoration of fire-affected forest ecosystems.
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Affiliation(s)
- Zizhen Li
- College of Forestry, Gansu Agricultural University, Lanzhou, China
| | - Jia Wei
- Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Wanpeng He
- College of Forestry, Gansu Agricultural University, Lanzhou, China
| | - Xueping Cao
- College of Forestry, Gansu Agricultural University, Lanzhou, China
| | - Xiaolei Zhou
- College of Forestry, Gansu Agricultural University, Lanzhou, China.
| | - Qing Tian
- Gansu Academy of Agricultural Sciences, Lanzhou, China.
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Kandlikar GS. Quantifying soil microbial effects on plant species coexistence: A conceptual synthesis. AMERICAN JOURNAL OF BOTANY 2024; 111:e16316. [PMID: 38659131 DOI: 10.1002/ajb2.16316] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Revised: 03/01/2024] [Accepted: 03/04/2024] [Indexed: 04/26/2024]
Abstract
Soil microorganisms play a critical role in shaping the biodiversity dynamics of plant communities. These microbial effects can arise through direct mediation of plant fitness by pathogens and mutualists, and over the past two decades, numerous studies have shined a spotlight on the role of dynamic feedbacks between plants and soil microorganisms as key determinants of plant species coexistence. Such feedbacks occur when plants modify the composition of the soil community, which in turn affects plant performance. Stimulated by a theoretical model developed in the 1990s, a bulk of the empirical evidence for microbial controls over plant coexistence comes from experiments that quantify plant growth in soil communities that were previously conditioned by conspecific or heterospecific plants. These studies have revealed that soil microbes can generate strong negative to positive frequency-dependent dynamics among plants. Even as soil microbes have become recognized as a key player in determining plant coexistence outcomes, the past few years have seen a renewed interest in expanding the conceptual foundations of this field. New results include re-interpretations of key metrics from classic two-species models, extensions of plant-soil feedback theory to multispecies communities, and frameworks to integrate plant-soil feedbacks with processes like intra- and interspecific competition. Here, I review the implications of theoretical developments for interpreting existing empirical results and highlight proposed analyses and designs for future experiments that can enable a more complete understanding of microbial regulation of plant community dynamics.
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Wang X, Zhou C, Zuo S, Ji Y, Liu W, Huang D. Heavy grazing reduces soil bacterial diversity by increasing soil pH in a semi-arid steppe. PeerJ 2024; 12:e17031. [PMID: 38464755 PMCID: PMC10924786 DOI: 10.7717/peerj.17031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Accepted: 02/07/2024] [Indexed: 03/12/2024] Open
Abstract
Background In a context of long-term highly intensive grazing in grassland ecosystems, a better understanding of how quickly belowground biodiversity responds to grazing is required, especially for soil microbial diversity. Methods In this study, we conducted a grazing experiment which included the CK (no grazing with a fenced enclosure undisturbed by livestock), light and heavy grazing treatments in a desert steppe in Inner Mongolia, China. Microbial diversity and soil chemical properties (i.e., pH value, organic carbon, inorganic nitrogen (IN, NH 4 + -N and NO 3 - -N), total carbon, nitrogen, phosphorus, and available phosphorus content) both in rhizosphere and non-rhizosphere soils were analyzed to explore the responses of microbial diversity to grazing intensity and the underlying mechanisms. Results The results showed that heavy grazing only deceased bacterial diversity in the non-rhizosphere soil, but had no any significant effects on fungal diversity regardless of rhizosphere or non-rhizosphere soils. Bacterial diversity in the rhizosphere soil was higher than that of non-rhizosphere soil only in the heavy grazing treatment. Also, heavy grazing significantly increased soil pH value but deceased NH4+-N and available phosphorus in the non-rhizosphere soil. Spearman correlation analysis showed that soil pH value was significantly negatively correlated with the bacterial diversity in the non-rhizosphere soil. Combined, our results suggest that heavy grazing decreased soil bacterial diversity in the non-rhizosphere soil by increasing soil pH value, which may be due to the accumulation of dung and urine from livestock. Our results highlight that soil pH value may be the main factor driving soil microbial diversity in grazing ecosystems, and these results can provide scientific basis for grassland management and ecological restoration in arid and semi-arid area.
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Affiliation(s)
- Xiaonan Wang
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
| | - Chengyang Zhou
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
| | - Shining Zuo
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
| | - Yixin Ji
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
| | - Wenxin Liu
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
| | - Ding Huang
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
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6
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Chung YA. The temporal and spatial dimensions of plant-soil feedbacks. THE NEW PHYTOLOGIST 2023; 237:2012-2019. [PMID: 36604846 DOI: 10.1111/nph.18719] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2022] [Accepted: 12/12/2022] [Indexed: 06/17/2023]
Abstract
Feedbacks between plants and soil microbes form a keystone to terrestrial community and ecosystem dynamics. Recent advances in dissecting the spatial and temporal dynamics of plant-soil feedbacks (PSFs) have challenged longstanding assumptions of spatially well-mixed microbial communities and exceedingly fast microbial assembly dynamics relative to plant lifespans. Instead, PSFs emerge from interactions that are inherently mismatched in spatial and temporal scales, and explicitly considering these spatial and temporal dynamics is crucial to understanding the contribution of PSFs to foundational ecological patterns. I propose a synthetic spatiotemporal framework for future research that pairs experimental and modeling approaches grounded in mechanism to improve predictability and generalizability of PSFs.
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Affiliation(s)
- Y Anny Chung
- Departments of Plant Biology and Plant Pathology, University of Georgia, Athens, GA, 30602, USA
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7
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Hawlena H, Garrido M, Cohen C, Halle S, Cohen S. Bringing the Mechanistic Approach Back to Life: A Systematic Review of the Experimental Evidence for Coexistence and Four of Its Classical Mechanisms. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.898074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Coexistence theories develop rapidly at the ecology forefront suffering from interdisciplinary gaps and a lack of universality. The modern coexistence theory (MCT) was developed to address these deficiencies by formulating the universal conditions for coexistence. However, despite this theory's mechanistic foundation, initially, it has only rarely been used to determine the exact mechanisms that govern the competitive outcome. Recent theoretical developments have made MCT more accessible to experimentalists, but they can be challenging in practice. We propose that a comprehensive understanding of species co-occurrence patterns in nature can be reached by complementing the phenomenological approach with both the mechanistic view of MCT and coexistence experiments of the type that prevailed from the 1970s to the 2010s, which focused on specific mechanisms (designated the “mechanistic approach”). As a first step in this direction, we conducted a systematic review of the literature from 1967 to 2020, covering mechanistic experiments for invasibility—the criterion for species coexistence—and the best-studied classical coexistence mechanisms, namely, resource-ratio, natural enemy partitioning, frequency-dependent exploitation by generalist enemies, and the storage effect. The goals of the review were to evaluate (i) the percentage of the abovementioned mechanistic experiments that satisfy the theoretical criteria (designated “eligible studies”), (ii) the scope of these eligible studies, and (iii) their level of support for the theoretical predictions, and to identify their (iv) overarching implications and (v) research gaps. Through examination of 2,510 publications, the review reveals that almost 50 years after the theoretical formulations of the above four coexistence mechanisms, we still lack sufficient evidence to reveal the prevalence of coexistence and of each of the coexistence mechanisms, and to assess the dependency of the mechanisms on the natural history of the competing organisms. By highlighting, on the one hand, the overarching implications of the mechanistic approach to coexistence, and on the other hand, current research gaps, and by offering ways to bridge these gaps in the future, we seek to bring the mechanistic approach back to life.
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A quantitative synthesis of soil microbial effects on plant species coexistence. Proc Natl Acad Sci U S A 2022; 119:e2122088119. [PMID: 35605114 DOI: 10.1073/pnas.2122088119] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
SignificanceUnderstanding the processes that maintain plant diversity is a key goal in ecology. Many previous studies have shown that soil microbes can generate stabilizing or destabilizing feedback loops that drive either plant species coexistence or monodominance. However, theory shows that microbial controls over plant coexistence also arise through microbially mediated competitive imbalances, which have been largely neglected. Using data from 50 studies, we found that soil microbes affect plant dynamics primarily by generating competitive fitness differences rather than stabilizing or destabilizing feedbacks. Consequently, in the absence of other competitive asymmetries among plants, soil microbes are predicted to drive species exclusion more than coexistence. These results underscore the need for measuring competitive fitness differences when evaluating microbial controls over plant coexistence.
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9
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Lee K, Missaoui A, Mahmud K, Presley H, Lonnee M. Interaction between Grasses and Epichloë Endophytes and Its Significance to Biotic and Abiotic Stress Tolerance and the Rhizosphere. Microorganisms 2021. [PMID: 34835312 DOI: 10.1007/10.3390/microorganisms9112186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/18/2023] Open
Abstract
Cool-season grasses are the most common forage types in livestock operations and amenities. Several of the cool-season grasses establish mutualistic associations with an endophytic fungus of the Epichloë genus. The grasses and endophytic fungi have evolved over a long period of time to form host-fungus specific relationships that confer protection for the grass against various stressors in exchange for housing and nutrients to the fungus. This review provides an overview of the mechanisms by which Epichloë endophytes and grasses interact, including molecular pathways for secondary metabolite production. It also outlines specific mechanisms by which the endophyte helps protect the plant from various abiotic and biotic stressors. Finally, the review provides information on how Epichloë infection of grass and stressors affect the rhizosphere environment of the plant.
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Affiliation(s)
- Kendall Lee
- Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA 30602, USA
| | - Ali Missaoui
- Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA 30602, USA
- Department of Crop and Soil Science, University of Georgia, Athens, GA 30602, USA
| | - Kishan Mahmud
- Center for Applied Genetic Technologies, University of Georgia, Athens, GA 30602, USA
| | - Holly Presley
- Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA 30602, USA
| | - Marin Lonnee
- Department of Crop and Soil Science, University of Georgia, Athens, GA 30602, USA
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10
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Lee K, Missaoui A, Mahmud K, Presley H, Lonnee M. Interaction between Grasses and Epichloë Endophytes and Its Significance to Biotic and Abiotic Stress Tolerance and the Rhizosphere. Microorganisms 2021; 9:2186. [PMID: 34835312 PMCID: PMC8623577 DOI: 10.3390/microorganisms9112186] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Revised: 10/13/2021] [Accepted: 10/14/2021] [Indexed: 11/16/2022] Open
Abstract
Cool-season grasses are the most common forage types in livestock operations and amenities. Several of the cool-season grasses establish mutualistic associations with an endophytic fungus of the Epichloë genus. The grasses and endophytic fungi have evolved over a long period of time to form host-fungus specific relationships that confer protection for the grass against various stressors in exchange for housing and nutrients to the fungus. This review provides an overview of the mechanisms by which Epichloë endophytes and grasses interact, including molecular pathways for secondary metabolite production. It also outlines specific mechanisms by which the endophyte helps protect the plant from various abiotic and biotic stressors. Finally, the review provides information on how Epichloë infection of grass and stressors affect the rhizosphere environment of the plant.
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Affiliation(s)
- Kendall Lee
- Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA 30602, USA; (K.L.); (H.P.)
| | - Ali Missaoui
- Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA 30602, USA; (K.L.); (H.P.)
- Department of Crop and Soil Science, University of Georgia, Athens, GA 30602, USA;
| | - Kishan Mahmud
- Center for Applied Genetic Technologies, University of Georgia, Athens, GA 30602, USA;
| | - Holly Presley
- Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA 30602, USA; (K.L.); (H.P.)
| | - Marin Lonnee
- Department of Crop and Soil Science, University of Georgia, Athens, GA 30602, USA;
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Ke PJ, Levine JM. The Temporal Dimension of Plant-Soil Microbe Interactions: Mechanisms Promoting Feedback between Generations. Am Nat 2021; 198:E80-E94. [DOI: 10.1086/715577] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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12
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Domínguez-Begines J, Ávila JM, García LV, Gómez-Aparicio L. Disentangling the role of oomycete soil pathogens as drivers of plant-soil feedbacks. Ecology 2021; 102:e03430. [PMID: 34105778 DOI: 10.1002/ecy.3430] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Accepted: 03/16/2021] [Indexed: 02/03/2023]
Abstract
Interactions among plant species and their soil biota drive plant-soil feedbacks (PSFs) that play a major role in the dynamics and diversity of plant communities. Among the different components of the soil community, pathogens are considered to be the main drivers of negative PSFs. Despite this, the number of studies that have experimentally quantified the contribution of soil pathogens to PSFs remains considerably low. Here we conducted a greenhouse experiment with oomycete-specific fungicide to quantify the contribution of soil pathogens, and particularly oomycete pathogens, to individual and pairwise PSFs in forest communities. We used as a case study Mediterranean mixed forests dominated by Quercus suber and invaded by the oomycete pathogen Phytophthora cinnamomi. The fungicide treatment was crossed with a competition treatment to explore how conspecific neighbors might modify pathogen effects. To place the results of the experiment in a wider context, we also conducted a systematic review of published papers that explicitly used fungicide to explore the role of pathogens in PSF experiments. Our experimental results showed that oomycete pathogens were the main drivers of individual PSFs in the study forests. Oomycete effects varied among tree species according to their susceptibility to P. cinnamomi, driving negative PSFs in the highly susceptible Q. suber but not in the coexistent Olea europaea. Oomycete-driven PSFs were not modified by intraspecific competition. Oomycete pathogens were also major contributors to negative pairwise PSFs assumed to promote species coexistence. Results from the systematic review supported the novelty of our experimental results, since only three studies had previously used oomycete-specific fungicide in a PSF context and none in systems invaded by exotic oomycetes. Overall, our results provide novel evidence of oomycete pathogens (including the exotic P. cinnamomi) as fundamental drivers of negative individual and pairwise PSFs with implications for species coexistence in invaded communities. Although in the short-term invasive pathogens might contribute to species coexistence by causing self-limitation in dominant species, strong inter-specific variation in self-limitation might undermine coexistence in the long-term. Because of the increasing number of exotic oomycetes worldwide, further attention should be given to oomycetes as drivers of PSFs in plant communities.
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Affiliation(s)
- Jara Domínguez-Begines
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Avenida Reina Mercedes, 10, Sevilla, 41012, Spain
| | - José M Ávila
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Avenida Reina Mercedes, 10, Sevilla, 41012, Spain
| | - Luis V García
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Avenida Reina Mercedes, 10, Sevilla, 41012, Spain
| | - Lorena Gómez-Aparicio
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Avenida Reina Mercedes, 10, Sevilla, 41012, Spain
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13
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Forero LE, Kulmatiski A, Grenzer J, Norton JM. Plant-soil feedbacks help explain biodiversity-productivity relationships. Commun Biol 2021; 4:789. [PMID: 34172839 PMCID: PMC8233354 DOI: 10.1038/s42003-021-02329-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Accepted: 06/09/2021] [Indexed: 01/18/2023] Open
Abstract
Species-rich plant communities can produce twice as much aboveground biomass as monocultures, but the mechanisms remain unresolved. We tested whether plant-soil feedbacks (PSFs) can help explain these biodiversity-productivity relationships. Using a 16-species, factorial field experiment we found that plants created soils that changed subsequent plant growth by 27% and that this effect increased over time. When incorporated into simulation models, these PSFs improved predictions of plant community growth and explained 14% of overyielding. Here we show quantitative, field-based evidence that diversity maintains productivity by suppressing plant disease. Though this effect alone was modest, it helps constrain the role of factors, such as niche partitioning, that have been difficult to quantify. This improved understanding of biodiversity-productivity relationships has implications for agriculture, biofuel production and conservation.
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Affiliation(s)
- Leslie E Forero
- Department of Wildland Resources and the Ecology Center, Utah State University, Logan, UT, USA
| | - Andrew Kulmatiski
- Department of Wildland Resources and the Ecology Center, Utah State University, Logan, UT, USA.
| | - Josephine Grenzer
- Department of Wildland Resources and the Ecology Center, Utah State University, Logan, UT, USA
| | - Jeanette M Norton
- Department of Plants, Soils and Climate, Utah State University, Logan, UT, USA
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Kaur J, Sharma J. Orchid Root Associated Bacteria: Linchpins or Accessories? FRONTIERS IN PLANT SCIENCE 2021; 12:661966. [PMID: 34249034 PMCID: PMC8264303 DOI: 10.3389/fpls.2021.661966] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2021] [Accepted: 05/19/2021] [Indexed: 05/28/2023]
Abstract
Besides the plant-fungus symbiosis in arbuscular mycorrhizal (AM) and ectomycorrhizal (EM) plants, many endorhizal and rhizosphere bacteria (Root Associated Bacteria, or RAB) also enhance plant fitness, diversity, and coexistence among plants via bi- or tripartite interactions with plant hosts and mycorrhizal fungi. Assuming that bacterial associations are just as important for the obligate mycorrhizal plant family Orchidaceae, surprisingly little is known about the RAB associated with orchids. Herein, we first present the current, underwhelming state of RAB research including their interactions with fungi and the influence of holobionts on plant fitness. We then delineate the need for novel investigations specifically in orchid RAB ecology, and sketch out questions and hypotheses which, when addressed, will advance plant-microbial ecology. We specifically discuss the potential effects of beneficial RAB on orchids as: (1) Plant Growth Promoting Rhizobacteria (PGPR), (2) Mycorrhization Helper Bacteria (MHB), and (3) constituents of an orchid holobiont. We further posit that a hologenomic view should be considered as a framework for addressing co-evolution of the plant host, their obligate Orchid Mycorrhizal Fungi (OMF), and orchid RAB. We conclude by discussing implications of the suggested research for conservation of orchids, their microbial partners, and their collective habitats.
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Affiliation(s)
- Jaspreet Kaur
- Department of Plant and Soil Science, Texas Tech University, Lubbock, TX, United States
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15
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Kandlikar गौरव कांडिलकर GS, Yan 严心怡 X, Levine JM, Kraft NJB. Soil Microbes Generate Stronger Fitness Differences than Stabilization among California Annual Plants. Am Nat 2020; 197:E30-E39. [PMID: 33417516 DOI: 10.1086/711662] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
AbstractSoil microorganisms influence a variety of processes in plant communities. Many theoretical and empirical studies have shown that dynamic feedbacks between plants and soil microbes can stabilize plant coexistence by generating negative frequency-dependent plant population dynamics. However, inferring the net effects of soil microbes on plant coexistence requires also quantifying the degree to which they provide one species an average fitness advantage, an effect that has received little empirical attention. We conducted a greenhouse study to quantify microbially mediated stabilization and fitness differences among 15 pairs of annual plants that co-occur in southern California grasslands. We found that although soil microbes frequently generate negative frequency-dependent dynamics that stabilize plant interactions, they simultaneously generate large average fitness differences between species. The net result is that if the plant species are otherwise competitively equivalent, the impact of plant-soil feedbacks is to often favor species exclusion over coexistence, a result that becomes evident only by quantifying the microbially mediated fitness difference. Our work highlights that comparing the stabilizing effects of plant-soil feedbacks to the fitness difference they generate is essential for understanding the influence of soil microbes on plant diversity.
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16
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Stein C, Mangan SA. Soil biota increase the likelihood for coexistence among competing plant species. Ecology 2020; 101:e03147. [PMID: 33460105 DOI: 10.1002/ecy.3147] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/16/2019] [Revised: 05/01/2020] [Accepted: 06/09/2020] [Indexed: 01/28/2023]
Abstract
Theory predicts that stable species coexistence will occur when population growth rates of competitively dominant species are suppressed when at high conspecific density. Although there is now compelling evidence that plant communities exhibit negative density dependence, the relative importance of the underlying processes leading to these patterns is rarely tested. We coupled reciprocal greenhouse and field experiments with community dynamics modeling to untangle the relative importance of soil biota from competition as stabilizing forces to coexistence. We found that (1) plant-soil biotic interactions compared to competitive interactions were stronger stabilizing forces, (2) only the strength of plant-soil biotic interactions was dependent on plant evolutionary history, and (3) the variation in the strength of plant-soil biotic interactions was correlated with relative abundance patterns in an opposite way than was the variation in the strength of competitive interactions. Collectively, our results demonstrate the fundamental role soil biota have in maintaining plant community diversity.
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Affiliation(s)
- Claudia Stein
- Department of Biology and Environmental Sciences, Auburn University at Montgomery, 7061 Senator's Drive, Montgomery, Alabama, 36117, USA.,Tyson Research Center, Washington University in St. Louis, 6750 Tyson Valley Rd, Eureka, Missouri, 63025, USA
| | - Scott A Mangan
- Tyson Research Center, Washington University in St. Louis, 6750 Tyson Valley Rd, Eureka, Missouri, 63025, USA.,Department of Biological Sciences, Arkansas State University, Jonesboro, Arkansas, 72467, USA
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17
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Beals KK, Moore JAM, Kivlin SN, Bayliss SLJ, Lumibao CY, Moorhead LC, Patel M, Summers JL, Ware IM, Bailey JK, Schweitzer JA. Predicting Plant-Soil Feedback in the Field: Meta-Analysis Reveals That Competition and Environmental Stress Differentially Influence PSF. Front Ecol Evol 2020. [DOI: 10.3389/fevo.2020.00191] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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18
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Collins CD, Bever JD, Hersh MH. Community context for mechanisms of disease dilution: insights from linking epidemiology and plant-soil feedback theory. Ann N Y Acad Sci 2020; 1469:65-85. [PMID: 32170775 PMCID: PMC7317922 DOI: 10.1111/nyas.14325] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2019] [Revised: 01/31/2020] [Accepted: 02/13/2020] [Indexed: 12/21/2022]
Abstract
In many natural systems, diverse host communities can reduce disease risk, though less is known about the mechanisms driving this "dilution effect." We relate feedback theory, which focuses on pathogen-mediated coexistence, to mechanisms of dilution derived from epidemiological models, with the central goal of gaining insights into host-pathogen interactions in a community context. We first compare the origin, structure, and application of epidemiological and feedback models. We then explore the mechanisms of dilution, which are grounded in single-pathogen, single-host epidemiological models, from the perspective of feedback theory. We also draw on feedback theory to examine how coinfecting pathogens, and pathogens that vary along a host specialist-generalist continuum, apply to dilution theory. By identifying synergies among the feedback and epidemiological approaches, we reveal ways in which organisms occupying different trophic levels contribute to diversity-disease relationships. Additionally, using feedbacks to distinguish dilution in disease incidence from dilution in the net effect of disease on host fitness allows us to articulate conditions under which definitions of dilution may not align. After ascribing dilution mechanisms to macro- or microorganisms, we propose ways in which each contributes to diversity-disease and productivity-diversity relationships. Our analyses lead to predictions that can guide future research efforts.
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Affiliation(s)
| | - James D. Bever
- Department of Ecology and Evolutionary BiologyUniversity of KansasLawrenceKansas
- Kansas Biological SurveyUniversity of KansasLawrenceKansas
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19
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Christie K, Strauss SY. Frequency-dependent fitness and reproductive dynamics contribute to habitat segregation in sympatric jewelflowers. Proc Biol Sci 2020; 287:20200559. [PMID: 32396796 DOI: 10.1098/rspb.2020.0559] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
Coexistence results from a complex suite of past and contemporary processes including biogeographic history, adaptation, ecological interactions and reproductive dynamics. Here we explore drivers of local micro-parapatry in which two closely related and reproductively isolated Streptanthus species (jewelflower, Brassicaceae) inhabit continuous or adjacent habitat patches and occur within seed dispersal range, yet rarely overlap in fine-scale distribution. We find some evidence for abiotic niche partitioning and local adaptation, however differential survival across habitats cannot fully explain the scarcity of coexistence. Competition may also reduce the fitness of individuals migrating into occupied habitats, yet its effects are insufficient to drive competitive exclusion. Experimental migrants suffered reduced seed production and seed viability at sites occupied by heterospecifics, and we infer that heterospecific pollen transfer by shared pollinators contributes to wasted gametes when the two congeners come into contact. A minority disadvantage may reduce effective colonization of patches already occupied by heterospecifics, even when habitat patches are environmentally suitable. Differential adaptation and resource competition have often been evoked as primary drivers of habitat segregation in plants, yet negative reproductive interactions-including reproductive interference and decreased fecundity among low-frequency migrants-may also contribute to non-overlapping distributions of related species along local tension zones.
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Affiliation(s)
- Kyle Christie
- Department of Evolution and Ecology, and Center for Population Biology, University of California Davis, One Shields Avenue, Davis CA 95616-5270, USA
| | - Sharon Y Strauss
- Department of Evolution and Ecology, and Center for Population Biology, University of California Davis, One Shields Avenue, Davis CA 95616-5270, USA
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20
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CAM plant expansion favored indirectly by asymmetric climate warming and increased rainfall variability. Oecologia 2020; 193:1-13. [PMID: 32076818 DOI: 10.1007/s00442-020-04624-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2019] [Accepted: 02/11/2020] [Indexed: 10/25/2022]
Abstract
Recent observational evidence suggests that nighttime temperatures are increasing faster than daytime temperatures, while in some regions precipitation events are becoming less frequent and more intense. The combined ecological impacts of these climatic changes on crassulacean acid metabolism (CAM) plants and their interactions with other functional groups (i.e., grass communities) remain poorly understood. Here we developed a growth chamber experiment to investigate how two CAM-grass communities in desert ecosystems of the southwestern United States and northern Mexico respond to asymmetric warming and increasing rainfall variability. Grasses generally showed competitive advantages over CAM plants with increasing rainfall variability under ambient temperature conditions. In contrast, asymmetric warming caused mortality of both grass species (Bouteloua eriopoda and Bouteloua curtipendula) in both rainfall treatments due to enhanced drought stress. Grass mortality indirectly favored CAM plants even though the biomass of both CAM species Cylindropuntia imbricata and Opuntia phaeacantha significantly decreased. The stem's volume-to-surface ratio of C. imbricata was significantly higher in mixture than in monoculture under ambient temperature (both P < 0.0014); however, the difference became insignificant under asymmetric warming (both P > 0.1625), suggesting that warming weakens the negative effects of interspecific competition on CAM plant growth. Our findings suggest that while the increase in intra-annual rainfall variability enhances grass productivity, asymmetric warming may lead to grass mortality, thereby indirectly favoring the expansion of co-existing CAM plants. This study provides novel experimental evidence showing how the ongoing changes in global warming and rainfall variability affect CAM-grass growth and interactions in dryland ecosystems.
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21
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McHaffie MB, Maherali H. Variation in mycorrhizal growth response influences competitive interactions and mechanisms of plant species coexistence. Oecologia 2020; 192:755-765. [PMID: 31982952 DOI: 10.1007/s00442-020-04609-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2019] [Accepted: 01/16/2020] [Indexed: 11/26/2022]
Abstract
Plant species vary in their growth response to arbuscular mycorrhizal (AM) fungi, with responses ranging from negative to positive. Differences in response to AM fungi may affect competition between plant species, influencing their ability to coexist. We hypothesized that positively responding species, whose growth is stimulated by AM fungi, will experience stronger intraspecific competition and weaker interspecific competition in soil containing AM fungi, while neutrally or negatively responding species should experience weaker intraspecific and stronger interspecific competition. We grew Plantago lanceolata, which responds positively to AM fungi, and Bromus inermis, which responds negatively to AM fungi, in an additive response surface competition experiment that varied the total density and relative frequency of each species. Plants were grown in sterilized background soil that had been inoculated with whole soil biota, which includes AM fungi, or a microbial wash, that contained other soil microbes but no AM fungi, or in sterilized soil that contained no biota. The positively responding P. lanceolata was more strongly limited by intraspecific than interspecific competition when AM fungi were present. By contrast, the presence of AM fungi decreased the strength of intraspecific competition experienced by the negatively responding B. inermis. Because AM fungi are almost always present in soil, strong intraspecific competition in positively responding species would prevent them from outcompeting species that respond neutrally or negatively to AM fungi. The potential for increased intraspecific competition to offset growth benefits of AM fungi could, therefore, be a stabilizing mechanism that promotes coexistence among plant species.
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Affiliation(s)
- Mara B McHaffie
- Department of Integrative Biology, University of Guelph, Guelph, ON, N1G 2W1, Canada.
| | - Hafiz Maherali
- Department of Integrative Biology, University of Guelph, Guelph, ON, N1G 2W1, Canada
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22
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Ke P, Wan J. Effects of soil microbes on plant competition: a perspective from modern coexistence theory. ECOL MONOGR 2019. [DOI: 10.1002/ecm.1391] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Po‐Ju Ke
- Department of Biology Stanford University Stanford California 94305‐5020 USA
| | - Joe Wan
- Department of Biology Stanford University Stanford California 94305‐5020 USA
- Institute of Integrative Biology Department of Environmental Systems Science ETH Zürich 8092 Zürich Switzerland
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23
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Lynn JS, Duarte DA, Rudgers JA. Soil microbes that may accompany climate warming increase alpine plant production. Oecologia 2019; 191:493-504. [PMID: 31571041 DOI: 10.1007/s00442-019-04518-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2019] [Accepted: 09/21/2019] [Indexed: 12/20/2022]
Abstract
Climate change is causing species with non-overlapping ranges to come in contact, and a key challenge is to predict the consequences of such species re-shuffling. Experiments on plants have focused largely on novel competitive interactions; other species interactions, such as plant-microbe symbioses, while less studied, may also influence plant responses to climate change. In this greenhouse study, we evaluated interactions between soil microbes and alpine-restricted plant species, simulating a warming scenario in which low-elevation microbes migrate upslope into the distribution of alpine plants. We examined three alpine grasses from the Rocky Mountains, CO, USA (Poa alpina, Festuca brachyphylla, and Elymus scribneri). We used soil inocula from within (resident) or below (novel) the plants' current elevation range and examined responses in plant biomass, plant traits, and fungal colonization of roots. Resident soil inocula from the species' home range decreased biomass to a greater extent than novel soil inocula. The depressed growth in resident soils suggested that these soils harbor more carbon-demanding microbes, as plant biomass generally declined with greater fungal colonization of roots, especially in resident soil inocula. Although plant traits did not respond to the provenance of soil inocula, specific leaf area declined and root:shoot ratio increased when soil inocula were sterilized, indicating microbial mediation of plant trait expression. Contrary to current predictions, our findings suggest that if upwardly migrating microbes were to displace current soil microbes, alpine plants may benefit from this warming-induced microbial re-shuffling.
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Affiliation(s)
- Joshua S Lynn
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA. .,The Rocky Mountain Biological Laboratory, Gothic, CO, 81224, USA. .,Department of Biological Science, University of Bergen, 5006, Bergen, Norway.
| | - Danielle A Duarte
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Jennifer A Rudgers
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA.,The Rocky Mountain Biological Laboratory, Gothic, CO, 81224, USA
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24
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Kulmatiski A. Plant-Soil Feedbacks Predict Native but Not Non-native Plant Community Composition: A 7-Year Common-Garden Experiment. Front Ecol Evol 2019. [DOI: 10.3389/fevo.2019.00326] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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25
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Broekman MJE, Muller-Landau HC, Visser MD, Jongejans E, Wright SJ, de Kroon H. Signs of stabilisation and stable coexistence. Ecol Lett 2019; 22:1957-1975. [PMID: 31328414 DOI: 10.1111/ele.13349] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Revised: 03/19/2019] [Accepted: 06/24/2019] [Indexed: 01/12/2023]
Abstract
Many empirical studies motivated by an interest in stable coexistence have quantified negative density dependence, negative frequency dependence, or negative plant-soil feedback, but the links between these empirical results and ecological theory are not straightforward. Here, we relate these analyses to theoretical conditions for stabilisation and stable coexistence in classical competition models. By stabilisation, we mean an excess of intraspecific competition relative to interspecific competition that inherently slows or even prevents competitive exclusion. We show that most, though not all, tests demonstrating negative density dependence, negative frequency dependence, and negative plant-soil feedback constitute sufficient conditions for stabilisation of two-species interactions if applied to data for per capita population growth rates of pairs of species, but none are necessary or sufficient conditions for stable coexistence of two species. Potential inferences are even more limited when communities involve more than two species, and when performance is measured at a single life stage or vital rate. We then discuss two approaches that enable stronger tests for stable coexistence-invasibility experiments and model parameterisation. The model parameterisation approach can be applied to typical density-dependence, frequency-dependence, and plant-soil feedback data sets, and generally enables better links with mechanisms and greater insights, as demonstrated by recent studies.
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Affiliation(s)
- Maarten J E Broekman
- Department of Plant Ecology and Physiology, Institute for Water and Wetland Research, Radboud University, Nijmegen, The Netherlands
| | - Helene C Muller-Landau
- Smithsonian Tropical Research Institute, Apartado Postal, 0843-03092, Balboa, Ancón, Panamá
| | - Marco D Visser
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, New Jersey, USA
| | - Eelke Jongejans
- Department of Animal Ecology and Physiology, Institute for Water and Wetland Research, Radboud University, Nijmegen, The Netherlands
| | - S J Wright
- Smithsonian Tropical Research Institute, Apartado Postal, 0843-03092, Balboa, Ancón, Panamá
| | - Hans de Kroon
- Department of Plant Ecology and Physiology, Institute for Water and Wetland Research, Radboud University, Nijmegen, The Netherlands
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26
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Chung YA, Jumpponen A, Rudgers JA. Divergence in Diversity and Composition of Root-Associated Fungi Between Greenhouse and Field Studies in a Semiarid Grassland. MICROBIAL ECOLOGY 2019; 78:122-135. [PMID: 30421114 DOI: 10.1007/s00248-018-1277-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2018] [Accepted: 10/16/2018] [Indexed: 06/09/2023]
Abstract
Investigations of plant-soil feedbacks (PSF) and plant-microbe interactions often rely exclusively on greenhouse experiments, yet we have little understanding of how, and when, results can be extrapolated to explain phenomena in nature. A systematic comparison of microbial communities using the same host species across study environments can inform the generalizability of such experiments. We used Illumina MiSeq sequencing to characterize the root-associated fungi of two foundation grasses from a greenhouse PSF experiment, a field PSF experiment, field monoculture stands, and naturally occurring resident plants in the field. A core community consisting < 10% of total fungal OTU richness but > 50% of total sequence abundance occurred in plants from all study types, demonstrating the ability of field and greenhouse experiments to capture the dominant component of natural communities. Fungal communities were plant species-specific across the study types, with the core community showing stronger host specificity than peripheral taxa. Roots from the greenhouse and field PSF experiments had lower among sample variability in community composition and higher diversity than those from naturally occurring, or planted monoculture plants from the field. Core and total fungal composition differed substantially across study types, and dissimilarity between fungal communities did not predict plant-soil feedbacks measured in experiments. These results suggest that rhizobiome assembly mechanisms in nature differ from the dynamics of short-term, inoculation studies. Our results validate the efficacy of common PSF experiment designs to test soil inoculum effects, and highlight the challenges of scaling the underlying microbial mechanisms of plant responses from whole-community inoculation experiments to natural ecosystems.
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Affiliation(s)
- Y Anny Chung
- Department of Biology, University of New Mexico, Albuquerque, NM, USA.
- Department of Wildland Resources, Utah State University, 5230 Old Main Hill, Logan, UT, 84322, USA.
| | - A Jumpponen
- Division of Biology, Kansas State University, Manhattan, KS, USA
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27
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Schreiber SJ, Yamamichi M, Strauss SY. When rarity has costs: coexistence under positive frequency‐dependence and environmental stochasticity. Ecology 2019; 100:e02664. [DOI: 10.1002/ecy.2664] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/30/2018] [Revised: 11/29/2018] [Accepted: 01/03/2019] [Indexed: 11/10/2022]
Affiliation(s)
- Sebastian J. Schreiber
- Department of Evolution and Ecology and Center for Population Biology University of California Davis California 95616 USA
| | - Masato Yamamichi
- Hakubi Center for Advanced Research Kyoto University Sakyo Kyoto 606‐8501 Japan
- Center for Ecological Research Kyoto University Otsu Shiga 520‐2113 Japan
| | - Sharon Y. Strauss
- Department of Evolution and Ecology and Center for Population Biology University of California Davis California 95616 USA
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28
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Chung YA, Collins SL, Rudgers JA. Connecting plant–soil feedbacks to long‐term stability in a desert grassland. Ecology 2019; 100:e02756. [DOI: 10.1002/ecy.2756] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/08/2019] [Revised: 03/26/2019] [Accepted: 04/17/2019] [Indexed: 11/10/2022]
Affiliation(s)
- Y. Anny Chung
- Department of Biology University of New Mexico Albuquerque New Mexico USA
- Departments of Plant Biology and Plant Pathology University of Georgia Athens Georgia 30602 USA
| | - Scott L. Collins
- Department of Biology University of New Mexico Albuquerque New Mexico USA
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29
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Crawford KM, Bauer JT, Comita LS, Eppinga MB, Johnson DJ, Mangan SA, Queenborough SA, Strand AE, Suding KN, Umbanhowar J, Bever JD. When and where plant-soil feedback may promote plant coexistence: a meta-analysis. Ecol Lett 2019; 22:1274-1284. [PMID: 31149765 DOI: 10.1111/ele.13278] [Citation(s) in RCA: 109] [Impact Index Per Article: 21.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2019] [Revised: 03/22/2019] [Accepted: 04/10/2019] [Indexed: 01/23/2023]
Abstract
Plant-soil feedback (PSF) theory provides a powerful framework for understanding plant dynamics by integrating growth assays into predictions of whether soil communities stabilise plant-plant interactions. However, we lack a comprehensive view of the likelihood of feedback-driven coexistence, partly because of a failure to analyse pairwise PSF, the metric directly linked to plant species coexistence. Here, we determine the relative importance of plant evolutionary history, traits, and environmental factors for coexistence through PSF using a meta-analysis of 1038 pairwise PSF measures. Consistent with eco-evolutionary predictions, feedback is more likely to mediate coexistence for pairs of plant species (1) associating with similar guilds of mycorrhizal fungi, (2) of increasing phylogenetic distance, and (3) interacting with native microbes. We also found evidence for a primary role of pathogens in feedback-mediated coexistence. By combining results over several independent studies, our results confirm that PSF may play a key role in plant species coexistence, species invasion, and the phylogenetic diversification of plant communities.
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Affiliation(s)
- Kerri M Crawford
- Department of Biology & Biochemistry, University of Houston, Houston, TX, USA
| | - Jonathan T Bauer
- Department of Biology, Miami University, Oxford, OH, USA.,Institute for the Environment and Sustainability, Miami University, Oxford, OH, USA
| | - Liza S Comita
- School of Forestry & Environmental Studies, Yale University, New Haven, CT, USA
| | - Maarten B Eppinga
- Faculty of Geosciences, Department of Environmental Science, Copernicus Institute of Sustainable Development, Utrecht University, Utrecht, Netherlands
| | - Daniel J Johnson
- School of Forest Resources and Conservation, University of Florida, Tallahassee, FL, USA
| | - Scott A Mangan
- Department of Biology, Washington University in St. Louis, St. Louis, MO, USA
| | | | - Allan E Strand
- Department of Biology, College of Charleston, Charleston, SC, USA
| | - Katharine N Suding
- Department of Ecology & Evolutionary Biology, University of Colorado Boulder, Boulder, CO, USA
| | - James Umbanhowar
- Biology Department, University of North Carolina, Chapel Hill, NC, USA
| | - James D Bever
- Department of Ecology & Evolutionary Biology and The Kansas Biological Survey, University of Kansas, Lawrence, KS, USA
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30
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Kandlikar GS, Johnson CA, Yan X, Kraft NJB, Levine JM. Winning and losing with microbes: how microbially mediated fitness differences influence plant diversity. Ecol Lett 2019; 22:1178-1191. [DOI: 10.1111/ele.13280] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Revised: 01/19/2019] [Accepted: 04/17/2019] [Indexed: 01/02/2023]
Affiliation(s)
- Gaurav S. Kandlikar
- Department of Ecology and Evolutionary Biology University of California Los Angeles CA USA
| | | | - Xinyi Yan
- Department of Ecology and Evolutionary Biology University of California Los Angeles CA USA
| | - Nathan J. B. Kraft
- Department of Ecology and Evolutionary Biology University of California Los Angeles CA USA
| | - Jonathan M. Levine
- Institute of Integrative Biology ETH Zurich Zurich Switzerland
- Department of Ecology and Evolutionary Biology Princeton University Princeton NJ USA
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31
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Mack KML, Eppinga MB, Bever JD. Plant-soil feedbacks promote coexistence and resilience in multi-species communities. PLoS One 2019; 14:e0211572. [PMID: 30742633 PMCID: PMC6370276 DOI: 10.1371/journal.pone.0211572] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2018] [Accepted: 01/16/2019] [Indexed: 11/18/2022] Open
Abstract
Both ecological theory and empirical evidence suggest that negative frequency dependent feedbacks structure plant communities, but integration of these findings has been limited. Here we develop a generic model of frequency dependent feedback to analyze coexistence and invasibility in random theoretical and real communities for which frequency dependence through plant-soil feedbacks (PSFs) was determined empirically. We investigated community stability and invasibility by means of mechanistic analysis of invasion conditions and numerical simulations. We found that communities fall along a spectrum of coexistence types ranging from strict pair-wise negative feedback to strict intransitive networks. Intermediate community structures characterized by partial intransitivity may feature "keystone competitors" which disproportionately influence community stability. Real communities were characterized by stronger negative feedback and higher robustness to species loss than randomly assembled communities. Partial intransitivity became increasingly likely in more diverse communities. The results presented here theoretically explain why more diverse communities are characterized by stronger negative frequency dependent feedbacks, a pattern previously encountered in observational studies. Natural communities are more likely to be maintained by strict negative plant-soil feedback than expected by chance, but our results also show that community stability often depends on partial intransitivity. These results suggest that plant-soil feedbacks can facilitate coexistence in multi-species communities, but that these feedbacks may also initiate cascading effects on community diversity following from single-species loss.
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Affiliation(s)
- Keenan M. L. Mack
- Department of Biology, Indiana University, Bloomington, Indiana, United States of America
| | - Maarten B. Eppinga
- Department of Environmental Sciences, Copernicus Institute of Sustainable Development, Utrecht University, Utrecht, the Netherlands
- Department of Geography, University of Zurich, Zurich, Switzerland
| | - James D. Bever
- Department of Ecology and Evolutionary Biology and Kansas Biological Survey, University of Kansas, Lawrence, Kansas, United States of America
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32
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Siefert A, Zillig KW, Friesen ML, Strauss SY. Mutualists Stabilize the Coexistence of Congeneric Legumes. Am Nat 2018; 193:200-212. [PMID: 30720367 DOI: 10.1086/701056] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Coexistence requires that stabilizing niche differences, which cause species to limit themselves more than others, outweigh relative fitness differences, which cause competitive exclusion. Interactions with shared mutualists, which can differentially affect host fitness and change in magnitude with host frequency, can satisfy these conditions for coexistence, yet empirical tests of mutualist effects on relative fitness and stabilizing niche differences are largely lacking within the framework of coexistence theory. Here, we show that N-fixing rhizobial mutualists mediate coexistence in four naturally co-occurring congeneric legume (Trifolium) species. Using experimental greenhouse communities, we quantified relative fitness and stabilizing niche differences for each species in the presence of rhizobia originating from conspecific or congeneric hosts. Rhizobia stabilized coexistence by increasing the self-limitation of Trifolium species grown with rhizobia isolated from conspecifics, thus allowing congeners to increase when rare. Greenhouse-measured invasion growth rates predicted natural, unmanipulated coexistence dynamics of Trifolium species over 2 years at our field sites. Our results demonstrate that interactions with shared mutualists can stabilize the coexistence of closely related species.
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Rudgers JA, Dettweiler-Robinson E, Belnap J, Green LE, Sinsabaugh RL, Young KE, Cort CE, Darrouzet-Nardi A. Are fungal networks key to dryland primary production? AMERICAN JOURNAL OF BOTANY 2018; 105:1783-1787. [PMID: 30376156 DOI: 10.1002/ajb2.1184] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2018] [Accepted: 08/07/2018] [Indexed: 06/08/2023]
Affiliation(s)
- Jennifer A Rudgers
- Department of Biology, MSC03 2020, 1 University of New Mexico, Albuquerque, NM, 87131, USA
| | | | - Jayne Belnap
- U.S. Geological Survey, Southwest Biological Science Center, Moab, UT, 84532, USA
| | - Laura E Green
- Department of Biology, MSC03 2020, 1 University of New Mexico, Albuquerque, NM, 87131, USA
| | - Robert L Sinsabaugh
- Department of Biology, MSC03 2020, 1 University of New Mexico, Albuquerque, NM, 87131, USA
| | - Kristina E Young
- Department of Biological Sciences, University of Texas at El Paso, El Paso, TX, 79902, USA
| | - Catherine E Cort
- Department of Biological Sciences, University of Texas at El Paso, El Paso, TX, 79902, USA
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Dettweiler-Robinson E, Sinsabaugh RL, Rudgers JA. Biocrusts benefit from plant removal. AMERICAN JOURNAL OF BOTANY 2018; 105:1133-1141. [PMID: 30011080 DOI: 10.1002/ajb2.1120] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2018] [Accepted: 04/09/2018] [Indexed: 06/08/2023]
Abstract
PREMISE OF THE STUDY Productivity in drylands may depend on the sensitivity of interactions between plants and biocrusts. Given future climate variability, it is essential to understand how interactions may be context-dependent with precipitation regime. Furthermore, little is known about the additional interactions of these producers with the belowground biota (e.g., roots, fungi, microarthropods). We evaluated the effect of removal (such as could occur following disturbance) and net interaction of plants and biocrusts and additionally manipulated the abiotic and biotic context. METHODS We established field mesocosms containing grass (Bouteloua gracilis) and surrounding biocrusts, then clipped the plant or heat-sterilized the biocrust to simulate the loss of dryland producers. To test for context-dependency on the precipitation pattern, we imposed a large, infrequent or small, frequent precipitation regime. A mesh barrier was used to impede belowground connections that may couple the dynamics of producers. Productivity was assessed by plant biomass and biocrust chlorophyll content. KEY RESULTS Biocrusts increased chlorophyll content more when plants were removed than when they were present in the first year, but only in the small, frequent precipitation regime. In contrast, plant growth slightly declined with biocrust removal. Plant biomass and biocrust chlorophyll content were negatively correlated in the second year, suggesting net competition. Belowground connectivity weakly promoted overall biocrust relative productivity, but was generally weakly detrimental to plant relative productivity. CONCLUSIONS Altered precipitation patterns can amplify positive effects of plant removal on biocrust producers. Furthermore, we discovered that belowground networks contributed to dryland productivity by promoting biocrust performance.
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Affiliation(s)
- Eva Dettweiler-Robinson
- Department of Biology, University of New Mexico, MSC 03 2020, 1 University of New Mexico, Albuquerque, NM, 87131-0001
| | - Robert L Sinsabaugh
- Department of Biology, University of New Mexico, MSC 03 2020, 1 University of New Mexico, Albuquerque, NM, 87131-0001
| | - Jennifer A Rudgers
- Department of Biology, University of New Mexico, MSC 03 2020, 1 University of New Mexico, Albuquerque, NM, 87131-0001
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Lekberg Y, Bever JD, Bunn RA, Callaway RM, Hart MM, Kivlin SN, Klironomos J, Larkin BG, Maron JL, Reinhart KO, Remke M, van der Putten WH. Relative importance of competition and plant-soil feedback, their synergy, context dependency and implications for coexistence. Ecol Lett 2018; 21:1268-1281. [PMID: 29896848 DOI: 10.1111/ele.13093] [Citation(s) in RCA: 107] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2017] [Revised: 12/28/2017] [Accepted: 05/03/2018] [Indexed: 01/22/2023]
Abstract
Plants interact simultaneously with each other and with soil biota, yet the relative importance of competition vs. plant-soil feedback (PSF) on plant performance is poorly understood. Using a meta-analysis of 38 published studies and 150 plant species, we show that effects of interspecific competition (either growing plants with a competitor or singly, or comparing inter- vs. intraspecific competition) and PSF (comparing home vs. away soil, live vs. sterile soil, or control vs. fungicide-treated soil) depended on treatments but were predominantly negative, broadly comparable in magnitude, and additive or synergistic. Stronger competitors experienced more negative PSF than weaker competitors when controlling for density (inter- to intraspecific competition), suggesting that PSF could prevent competitive dominance and promote coexistence. When competition was measured against plants growing singly, the strength of competition overwhelmed PSF, indicating that the relative importance of PSF may depend not only on neighbour identity but also density. We evaluate how competition and PSFs might interact across resource gradients; PSF will likely strengthen competitive interactions in high resource environments and enhance facilitative interactions in low-resource environments. Finally, we provide a framework for filling key knowledge gaps and advancing our understanding of how these biotic interactions influence community structure.
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Affiliation(s)
- Ylva Lekberg
- MPG Ranch Missoula, MT, 59801, USA.,Department of Ecosystem and Conservation Sciences, University of Montana, Missoula, MT, 59812, USA
| | - James D Bever
- Department of Ecology and Evolutionary Biology, and Kansas Biological Survey, University of Kansas, Lawrence, KS, 66047, USA
| | - Rebecca A Bunn
- Department of Environmental Sciences, Western Washington University, Bellingham, WA, 98225, USA
| | - Ragan M Callaway
- Division of Biological Sciences, University of Montana, Missoula, MT, 59812.,Wildlife Biology and the Institute on Ecosystems, University of Montana, Missoula, MT
| | - Miranda M Hart
- Department of Biology, University of British Columbia Okanagan, Kelowna, BC, V1V 1V7, Canada
| | - Stephanie N Kivlin
- Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN, 37996, USA
| | - John Klironomos
- Department of Biology, University of British Columbia Okanagan, Kelowna, BC, V1V 1V7, Canada
| | | | - John L Maron
- Division of Biological Sciences, University of Montana, Missoula, MT, 59812
| | - Kurt O Reinhart
- United States Department of Agriculture-Agricultural Research Service, Fort Keogh Livestock and Range Research Laboratory, Miles City, MT, 59301, USA
| | - Michael Remke
- School of Forestry, College of Engineering Forestry and Natural Sciences, Northern Arizona University, Flagstaff, AZ, 86011, USA
| | - Wim H van der Putten
- Department of Terrestrial Ecology (NIOO-KNAW), Netherlands Institute of Ecology, 6708 PB, Wageningen, the Netherlands.,Department of Plant Sciences, Laboratory of Nematology, Wageningen University (WUR), 6700 ES, Wageningen, the Netherlands
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Egelkraut D, Kardol P, De Long JR, Olofsson J. The role of plant–soil feedbacks in stabilizing a reindeer‐induced vegetation shift in subarctic tundra. Funct Ecol 2018. [DOI: 10.1111/1365-2435.13113] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Dagmar Egelkraut
- Department of Ecology and Environmental ScienceUmeå University Umeå Sweden
| | - Paul Kardol
- Department of Forest Ecology and ManagementSwedish University of Agricultural Sciences Umeå Sweden
| | - Jonathan R. De Long
- Department of Terrestrial EcologyNetherlands Institute of Ecology Wageningen The Netherlands
| | - Johan Olofsson
- Department of Ecology and Environmental ScienceUmeå University Umeå Sweden
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Rudgers JA, Chung YA, Maurer GE, Moore DI, Muldavin EH, Litvak ME, Collins SL. Climate sensitivity functions and net primary production: A framework for incorporating climate mean and variability. Ecology 2018; 99:576-582. [DOI: 10.1002/ecy.2136] [Citation(s) in RCA: 62] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/30/2017] [Revised: 11/21/2017] [Accepted: 12/13/2017] [Indexed: 11/05/2022]
Affiliation(s)
- Jennifer A. Rudgers
- Department of Biology; MSC03-2020; University of New Mexico; Albuquerque New Mexico 87131 USA
| | - Y. Anny Chung
- Department of Biology; MSC03-2020; University of New Mexico; Albuquerque New Mexico 87131 USA
| | - Gregory E. Maurer
- Department of Biology; MSC03-2020; University of New Mexico; Albuquerque New Mexico 87131 USA
| | - Douglas I. Moore
- Department of Biology; MSC03-2020; University of New Mexico; Albuquerque New Mexico 87131 USA
| | - Esteban H. Muldavin
- Department of Biology; MSC03-2020; University of New Mexico; Albuquerque New Mexico 87131 USA
| | - Marcy E. Litvak
- Department of Biology; MSC03-2020; University of New Mexico; Albuquerque New Mexico 87131 USA
| | - Scott L. Collins
- Department of Biology; MSC03-2020; University of New Mexico; Albuquerque New Mexico 87131 USA
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Fitzpatrick CR, Copeland J, Wang PW, Guttman DS, Kotanen PM, Johnson MTJ. Assembly and ecological function of the root microbiome across angiosperm plant species. Proc Natl Acad Sci U S A 2018; 115:E1157-E1165. [PMID: 29358405 PMCID: PMC5819437 DOI: 10.1073/pnas.1717617115] [Citation(s) in RCA: 430] [Impact Index Per Article: 71.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
Across plants and animals, host-associated microbial communities play fundamental roles in host nutrition, development, and immunity. The factors that shape host-microbiome interactions are poorly understood, yet essential for understanding the evolution and ecology of these symbioses. Plant roots assemble two distinct microbial compartments from surrounding soil: the rhizosphere (microbes surrounding roots) and the endosphere (microbes within roots). Root-associated microbes were key for the evolution of land plants and underlie fundamental ecosystem processes. However, it is largely unknown how plant evolution has shaped root microbial communities, and in turn, how these microbes affect plant ecology, such as the ability to mitigate biotic and abiotic stressors. Here we show that variation among 30 angiosperm species, which have diverged for up to 140 million years, affects root bacterial diversity and composition. Greater similarity in root microbiomes between hosts leads to negative effects on plant performance through soil feedback, with specific microbial taxa in the endosphere and rhizosphere potentially affecting competitive interactions among plant species. Drought also shifts the composition of root microbiomes, most notably by increasing the relative abundance of the Actinobacteria. However, this drought response varies across host plant species, and host-specific changes in the relative abundance of endosphere Streptomyces are associated with host drought tolerance. Our results emphasize the causes of variation in root microbiomes and their ecological importance for plant performance in response to biotic and abiotic stressors.
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Affiliation(s)
- Connor R Fitzpatrick
- Department of Ecology & Evolutionary Biology, University of Toronto, Toronto, ON M5S 3B2, Canada;
- Department of Biology, University of Toronto Mississauga, Mississauga, ON L5L 1C6, Canada
| | - Julia Copeland
- Centre for the Analysis of Genome Evolution & Function, University of Toronto, ON M5S 3B2, Canada
| | - Pauline W Wang
- Centre for the Analysis of Genome Evolution & Function, University of Toronto, ON M5S 3B2, Canada
- Department of Cell & Systems Biology, University of Toronto, Toronto, ON M5S 3B2, Canada
| | - David S Guttman
- Centre for the Analysis of Genome Evolution & Function, University of Toronto, ON M5S 3B2, Canada
- Department of Cell & Systems Biology, University of Toronto, Toronto, ON M5S 3B2, Canada
| | - Peter M Kotanen
- Department of Ecology & Evolutionary Biology, University of Toronto, Toronto, ON M5S 3B2, Canada
- Department of Biology, University of Toronto Mississauga, Mississauga, ON L5L 1C6, Canada
| | - Marc T J Johnson
- Department of Ecology & Evolutionary Biology, University of Toronto, Toronto, ON M5S 3B2, Canada
- Department of Biology, University of Toronto Mississauga, Mississauga, ON L5L 1C6, Canada
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Chen N, Jayaprakash C, Yu K, Guttal V. Rising Variability, Not Slowing Down, as a Leading Indicator of a Stochastically Driven Abrupt Transition in a Dryland Ecosystem. Am Nat 2018; 191:E1-E14. [DOI: 10.1086/694821] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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Robust permanence for ecological equations with internal and external feedbacks. J Math Biol 2017; 77:79-105. [PMID: 29075847 PMCID: PMC5949143 DOI: 10.1007/s00285-017-1187-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2016] [Revised: 08/26/2017] [Indexed: 11/25/2022]
Abstract
Species experience both internal feedbacks with endogenous factors such as trait evolution and external feedbacks with exogenous factors such as weather. These feedbacks can play an important role in determining whether populations persist or communities of species coexist. To provide a general mathematical framework for studying these effects, we develop a theorem for coexistence for ecological models accounting for internal and external feedbacks. Specifically, we use average Lyapunov functions and Morse decompositions to develop sufficient and necessary conditions for robust permanence, a form of coexistence robust to large perturbations of the population densities and small structural perturbations of the models. We illustrate how our results can be applied to verify permanence in non-autonomous models, structured population models, including those with frequency-dependent feedbacks, and models of eco-evolutionary dynamics. In these applications, we discuss how our results relate to previous results for models with particular types of feedbacks.
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Affiliation(s)
- E. R. Jasper Wubs
- Dept of Terrestrial Ecology; Netherlands Inst. of Ecology (NIOO-KNAW); PO Box 50 NL-6700 AB Wageningen the Netherlands
- Laboratory of Nematology, Wageningen Univ. and Research Centre; Wageningen the Netherlands
| | - T. Martijn Bezemer
- Dept of Terrestrial Ecology; Netherlands Inst. of Ecology (NIOO-KNAW); PO Box 50 NL-6700 AB Wageningen the Netherlands
- Inst. of Biology, Leiden Univ.; Leiden the Netherlands
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