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Di Stefano N, Spence C. Should absolute pitch be considered as a unique kind of absolute sensory judgment in humans? A systematic and theoretical review of the literature. Cognition 2024; 249:105805. [PMID: 38761646 DOI: 10.1016/j.cognition.2024.105805] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Revised: 04/12/2024] [Accepted: 04/23/2024] [Indexed: 05/20/2024]
Abstract
Absolute pitch is the name given to the rare ability to identify a musical note in an automatic and effortless manner without the need for a reference tone. Those individuals with absolute pitch can, for example, name the note they hear, identify all of the tones of a given chord, and/or name the pitches of everyday sounds, such as car horns or sirens. Hence, absolute pitch can be seen as providing a rare example of absolute sensory judgment in audition. Surprisingly, however, the intriguing question of whether such an ability presents unique features in the domain of sensory perception, or whether instead similar perceptual skills also exist in other sensory domains, has not been explicitly addressed previously. In this paper, this question is addressed by systematically reviewing research on absolute pitch using the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) method. Thereafter, we compare absolute pitch with two rare types of sensory experience, namely synaesthesia and eidetic memory, to understand if and how these phenomena exhibit similar features to absolute pitch. Furthermore, a common absolute perceptual ability that has been often compared to absolute pitch, namely colour perception, is also discussed. Arguments are provided supporting the notion that none of the examined abilities can be considered like absolute pitch. Therefore, we conclude by suggesting that absolute pitch does indeed appear to constitute a unique kind of absolute sensory judgment in humans, and we discuss some open issues and novel directions for future research in absolute pitch.
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Affiliation(s)
- Nicola Di Stefano
- Institute of Cognitive Sciences and Technologies, National Research Council of Italy (CNR), Via Gian Domenico Romagnosi, 18, 00196 Rome, Italy.
| | - Charles Spence
- Crossmodal Research Laboratory, Department of Experimental Psychology, University of Oxford, Oxford, UK
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2
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Baden T. The vertebrate retina: a window into the evolution of computation in the brain. Curr Opin Behav Sci 2024; 57:None. [PMID: 38899158 PMCID: PMC11183302 DOI: 10.1016/j.cobeha.2024.101391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 03/14/2024] [Accepted: 03/24/2024] [Indexed: 06/21/2024]
Abstract
Animal brains are probably the most complex computational machines on our planet, and like everything in biology, they are the product of evolution. Advances in developmental and palaeobiology have been expanding our general understanding of how nervous systems can change at a molecular and structural level. However, how these changes translate into altered function - that is, into 'computation' - remains comparatively sparsely explored. What, concretely, does it mean for neuronal computation when neurons change their morphology and connectivity, when new neurons appear or old ones disappear, or when transmitter systems are slowly modified over many generations? And how does evolution use these many possible knobs and dials to constantly tune computation to give rise to the amazing diversity in animal behaviours we see today? Addressing these major gaps of understanding benefits from choosing a suitable model system. Here, I present the vertebrate retina as one perhaps unusually promising candidate. The retina is ancient and displays highly conserved core organisational principles across the entire vertebrate lineage, alongside a myriad of adjustments across extant species that were shaped by the history of their visual ecology. Moreover, the computational logic of the retina is readily interrogated experimentally, and our existing understanding of retinal circuits in a handful of species can serve as an anchor when exploring the visual circuit adaptations across the entire vertebrate tree of life, from fish deep in the aphotic zone of the oceans to eagles soaring high up in the sky.
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3
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Margetts BM, Stuart‐Fox D, Franklin AM. Red vision in animals is broadly associated with lighting environment but not types of visual task. Ecol Evol 2024; 14:e10899. [PMID: 38304263 PMCID: PMC10828735 DOI: 10.1002/ece3.10899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 12/19/2023] [Accepted: 01/03/2024] [Indexed: 02/03/2024] Open
Abstract
Red sensitivity is the exception rather than the norm in most animal groups. Among species with red sensitivity, there is substantial variation in the peak wavelength sensitivity (λmax) of the long wavelength sensitive (LWS) photoreceptor. It is unclear whether this variation can be explained by visual tuning to the light environment or to visual tasks such as signalling or foraging. Here, we examine long wavelength sensitivity across a broad range of taxa showing diversity in LWS photoreceptor λmax: insects, crustaceans, arachnids, amphibians, reptiles, fish, sharks and rays. We collated a list of 161 species with physiological evidence for a photoreceptor sensitive to red wavelengths (i.e. λmax ≥ 550 nm) and for each species documented abiotic and biotic factors that may be associated with peak sensitivity of the LWS photoreceptor. We found evidence supporting visual tuning to the light environment: terrestrial species had longer λmax than aquatic species, and of these, species from turbid shallow waters had longer λmax than those from clear or deep waters. Of the terrestrial species, diurnal species had longer λmax than nocturnal species, but we did not detect any differences across terrestrial habitats (closed, intermediate or open). We found no association with proxies for visual tasks such as having red morphological features or utilising flowers or coral reefs. These results support the emerging consensus that, in general, visual systems are broadly adapted to the lighting environment and diverse visual tasks. Links between visual systems and specific visual tasks are commonly reported, but these likely vary among species and do not lead to general patterns across species.
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Affiliation(s)
- Bryony M. Margetts
- School of BioSciencesThe University of MelbourneParkvilleVictoriaAustralia
| | - Devi Stuart‐Fox
- School of BioSciencesThe University of MelbourneParkvilleVictoriaAustralia
| | - Amanda M. Franklin
- School of BioSciencesThe University of MelbourneParkvilleVictoriaAustralia
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4
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Beilke EA, Sanchez JF, Hews DK, O'Keefe JM. Sexual dichromatism in the fur of a bat: An exploration of color differences and potential signaling functions. Ecol Evol 2024; 14:e11023. [PMID: 38371860 PMCID: PMC10870327 DOI: 10.1002/ece3.11023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Revised: 01/22/2024] [Accepted: 02/01/2024] [Indexed: 02/20/2024] Open
Abstract
Sex differences in body color (i.e., sexual dichromatism) are rare in bats and, more broadly, in mammals. The eastern red bat (Lasiurus borealis) is a common tree-roosting bat that occupies much of North America and has long been described as sexually dichromatic. However, previous research on this species found that absolute body size and collection year were better predictors of fur color in preserved specimens than sex. We revisited this issue and photographed 82 live eastern red bats under standardized conditions, then used image analysis to quantify pelage hue, saturation, and value. We used an information theoretic approach to evaluate four competing hypotheses about the principal drivers of color differences in the fur of eastern red bats. Our analyses demonstrated that sex was a better predictor of pelage color than body size; males had redder, more saturated, and lighter pelages than females. Additionally, the fur color of juvenile versus adult bats differed somewhat, as juveniles were darker than adults. In general, absolute body size (i.e., forearm length in bats) was a poor predictor of color in live eastern red bats. In an exploratory post-hoc analysis, we confirm that fur color is related to body mass (i.e., a proxy for body condition in bats), suggesting color might serve as a sexually selected signal of mate quality in this partially diurnal species. Future work should investigate the functional role of sexual dichromatism in this species, which could be related to signaling or possibly thermoregulation.
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Affiliation(s)
- Elizabeth A. Beilke
- Department of Natural Resources and Environmental SciencesUniversity of Illinois at Urbana‐ChampaignUrbanaIllinoisUSA
| | - Jahshua F. Sanchez
- Department of Natural Resources and Environmental SciencesUniversity of Illinois at Urbana‐ChampaignUrbanaIllinoisUSA
| | - Diana K. Hews
- Department of BiologyIndiana State UniversityTerre HauteIndianaUSA
| | - Joy M. O'Keefe
- Department of Natural Resources and Environmental SciencesUniversity of Illinois at Urbana‐ChampaignUrbanaIllinoisUSA
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5
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Newman BA, D’Angelo GJ. A Review of Cervidae Visual Ecology. Animals (Basel) 2024; 14:420. [PMID: 38338063 PMCID: PMC10854973 DOI: 10.3390/ani14030420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Revised: 01/21/2024] [Accepted: 01/25/2024] [Indexed: 02/12/2024] Open
Abstract
This review examines the visual systems of cervids in relation to their ability to meet their ecological needs and how their visual systems are specialized for particular tasks. Cervidae encompasses a diverse group of mammals that serve as important ecological drivers within their ecosystems. Despite evidence of highly specialized visual systems, a large portion of cervid research ignores or fails to consider the realities of cervid vision as it relates to their ecology. Failure to account for an animal's visual ecology during research can lead to unintentional biases and uninformed conclusions regarding the decision making and behaviors for a species or population. Our review addresses core behaviors and their interrelationship with cervid visual characteristics. Historically, the study of cervid visual characteristics has been restricted to specific areas of inquiry such as color vision and contains limited integration into broader ecological and behavioral research. The purpose of our review is to bridge these gaps by offering a comprehensive review of cervid visual ecology that emphasizes the interplay between the visual adaptations of cervids and their interactions with habitats and other species. Ultimately, a better understanding of cervid visual ecology allows researchers to gain deeper insights into their behavior and ecology, providing critical information for conservation and management efforts.
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Affiliation(s)
- Blaise A. Newman
- Warnell School of Forestry and Natural Resources, University of Georgia, Athens, GA 30602, USA
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6
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Rabin J, Poole E, Hall K, Price W. Cone letter charts: rapid color test using a range of letter sizes. Graefes Arch Clin Exp Ophthalmol 2023; 261:3671-3673. [PMID: 37233827 PMCID: PMC10667385 DOI: 10.1007/s00417-023-06111-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Revised: 04/11/2023] [Accepted: 05/10/2023] [Indexed: 05/27/2023] Open
Affiliation(s)
- Jeff Rabin
- University of the Incarnate Word Rosenberg School of Optometry, 9725 Datapoint Drive, San Antonio, TX, 78229, USA.
| | - Erica Poole
- University of the Incarnate Word Rosenberg School of Optometry, 9725 Datapoint Drive, San Antonio, TX, 78229, USA
| | - Kiana Hall
- University of the Incarnate Word Rosenberg School of Optometry, 9725 Datapoint Drive, San Antonio, TX, 78229, USA
| | - William Price
- University of the Incarnate Word Rosenberg School of Optometry, 9725 Datapoint Drive, San Antonio, TX, 78229, USA
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Anthwal N, Hall RP, de la Rosa Hernandez FA, Koger M, Yohe LR, Hedrick BP, Davies KTJ, Mutumi GL, Roseman CC, Dumont ER, Dávalos LM, Rossiter SJ, Sadier A, Sears KE. Cochlea development shapes bat sensory system evolution. Anat Rec (Hoboken) 2023. [PMID: 37994725 DOI: 10.1002/ar.25353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Revised: 11/01/2023] [Accepted: 11/08/2023] [Indexed: 11/24/2023]
Abstract
Sensory organs must develop alongside the skull within which they are largely encased, and this relationship can manifest as the skull constraining the organs, organs constraining the skull, or organs constraining one another in relative size. How this interplay between sensory organs and the developing skull plays out during the evolution of sensory diversity; however, remains unknown. Here, we examine the developmental sequence of the cochlea, the organ responsible for hearing and echolocation, in species with distinct diet and echolocation types within the ecologically diverse bat super-family Noctilionoidea. We found the size and shape of the cochlea largely correlates with skull size, with exceptions of Pteronotus parnellii, whose high duty cycle echolocation (nearly constant emission of sound pulses during their echolocation process allowing for detailed information gathering, also called constant frequency echolocation) corresponds to a larger cochlear and basal turn, and Monophyllus redmani, a small-bodied nectarivorous bat, for which interactions with other sensory organs restrict cochlea size. Our findings support the existence of developmental constraints, suggesting that both developmental and anatomical factors may act synergistically during the development of sensory systems in noctilionoid bats.
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Affiliation(s)
- Neal Anthwal
- King's College London, Centre for Craniofacial and Regenerative Biology, London, UK
- Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, California, USA
| | - Ronald P Hall
- Department of Life and Environment Sciences, University of California Merced, Merced, California, USA
| | | | - Michael Koger
- Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, California, USA
| | - Laurel R Yohe
- Department of Bioinformatics and Genomics, University of North Carolina Charlotte, Charlotte, North Carolina, USA
| | - Brandon P Hedrick
- Department of Biomedical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, New York, USA
| | - Kalina T J Davies
- School of Biological and Behavioural Sciences, Queen Mary University of London, London, UK
| | - Gregory L Mutumi
- Department of Life and Environment Sciences, University of California Merced, Merced, California, USA
| | - Charles C Roseman
- Department of Evolution, Ecology, and Behavior, University of Illinois at Urbana-Champaign, Urbana-Champaign, Illinois, USA
| | - Elizabeth R Dumont
- Department of Life and Environment Sciences, University of California Merced, Merced, California, USA
| | - Liliana M Dávalos
- Department of Ecology and Evolution and Consortium for Inter-Disciplinary Environmental Research, Stony Brook University, Stony Brook, New York, USA
| | - Stephen J Rossiter
- School of Biological and Behavioural Sciences, Queen Mary University of London, London, UK
| | - Alexa Sadier
- Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, California, USA
| | - Karen E Sears
- Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, California, USA
- Department of Molecular, Cellular, and Developmental Biology, University of California Los Angeles, Los Angeles, California, USA
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8
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Edwards TM. Designing for Hope: Biophilic Color Associations and Their Relevance to Clinical Settings. HERD-HEALTH ENVIRONMENTS RESEARCH & DESIGN JOURNAL 2023; 16:159-171. [PMID: 37194294 DOI: 10.1177/19375867231173410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
AIM To consider one common aspect of biophilic design (BD; i.e., color) and its relationship to an important element of well-being (i.e., hope). BACKGROUND BD is multifaceted making the identification of critical design elements difficult. Further complexity is introduced given that practice assumptions stemming from the biophilia hypothesis may be questioned. Consistent with the biophilia hypothesis, the author considers the study's findings from the perspectives of evolutionary psychology and psychobiology. METHODS One hundred and fifty four adult participants engaged in one of the three experiments. Using colored test cards, Experiment #1 sought to determine which of four biophilic colors (i.e., red, yellow, green, or blue) evoked the strongest experience of hope. Considering this color alone, Experiment #2 sought to manipulate "color depth." Participants were asked to identify what color depth evoked the strongest experience of hope. Experiment #3 sought to determine if the outcomes of Experiments #1 and #2 were due to a priming effect. All participants were asked about color associations they held. RESULTS Experiments #1 and #2 demonstrated that yellow at maximal color depth evoked the strongest experience of hope (p < .001). Experiment #3 demonstrated that no priming effect was evident (p < .05). No participant had a strong personal preference for/against yellow. Natural world color associations existed for yellow, green, and blue. Red held emotive associations. CONCLUSIONS These findings clearly associate yellow with hope. From the perspectives of evolutionary psychology and psychobiology this suggests color cues can evoke time-dependent motive states. Implications for practitioners designing spaces of hope within healthcare facilities are considered.
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Affiliation(s)
- Thomas Mark Edwards
- Eastern College Australia, Wantirna, Victoria, Australia
- Natural Intelligence Pty. Ltd., Berwick, Victoria, Australia
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9
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Zhang X, Wang X, Zhu H, Zhang D, Chen J, Wen Y, Li Y, Jin L, Xie C, Guo D, Luo T, Tong J, Zhou Y, Shen Y. Short-wavelength artificial light affects visual neural pathway development in mice. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 263:115282. [PMID: 37494734 DOI: 10.1016/j.ecoenv.2023.115282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Revised: 03/21/2023] [Accepted: 07/17/2023] [Indexed: 07/28/2023]
Abstract
Nearly all modern life depends on artificial light; however, it does cause health problems. With certain restrictions of artificial light emitting technology, the influence of the light spectrum is inevitable. The most remarkable problem is its overload in the short wavelength component. Short wavelength artificial light has a wide range of influences from ocular development to mental problems. The visual neuronal pathway, as the primary light-sensing structure, may contain the fundamental mechanism of all light-induced abnormalities. However, how the artificial light spectrum shapes the visual neuronal pathway during development in mammals is poorly understood. We placed C57BL/6 mice in three different spectrum environments (full-spectrum white light: 400-750 nm; violet light: 400 ± 20 nm; green light: 510 ± 20 nm) beginning at eye opening, with a fixed light time of 7:00-19:00. During development, we assessed the ocular axial dimension, visual function and retinal neurons. After two weeks under short wavelength conditions, the ocular axial length (AL), anterior chamber depth (ACD) and length of lens thickness, real vitreous chamber depth and retinal thickness (LLVR) were shorter, visual acuity (VA) decreased, and retinal electrical activity was impaired. The density of S-cones in the dorsal and ventral retinas both decreased after one week under short wavelength conditions. In the ventral retina, it increased after three weeks. Retinal ganglion cell (RGC) density and axon thickness were not influenced; however, the axonal terminals in the lateral geniculate nucleus (LGN) were less clustered and sparse. Amacrine cells (ACs) were significantly more activated. Green light has few effects. The KEGG and GO enrichment analyses showed that many genes related to neural circuitry, synaptic formation and neurotransmitter function were differentially expressed in the short wavelength light group. In conclusion, exposure to short wavelength artificial light in the early stage of vision-dependent development in mice delayed the development of the visual pathway. The axon terminus structure and neurotransmitter function may be the major suffering.
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Affiliation(s)
- Xuhong Zhang
- Department of Ophthalmology, the First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang Province, China
| | - Xiaoyu Wang
- Department of Ophthalmology, the First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang Province, China; Center for Brain Research and Brain-Machine Integration, School of Brain Science and Brain Medicine, Zhejiang University, Hangzhou, Zhejiang Province, China
| | - Hong Zhu
- Department of Ophthalmology, the First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang Province, China
| | - Dongyan Zhang
- Department of Ophthalmology, the First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang Province, China; Department of Ophthalmology, Shaoxing Central Hospital, Shaoxing, Zhejiang 312030, China
| | - Jinbo Chen
- Department of Ophthalmology, the First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang Province, China
| | - Yingying Wen
- Department of Ophthalmology, the First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang Province, China
| | - Yanqing Li
- Department of Ophthalmology, the First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang Province, China
| | - Le Jin
- Department of Ophthalmology, the First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang Province, China
| | - Chen Xie
- Department of Ophthalmology, the First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang Province, China
| | - Dongyu Guo
- Department of Ophthalmology, the First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang Province, China
| | - Ting Luo
- Zhejiang Academy of Agricultural Sciences, Institute of Agroproduct Safety and Nutrition, China
| | - Jianping Tong
- Department of Ophthalmology, the First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang Province, China.
| | - Yudong Zhou
- Department of Ophthalmology, the First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang Province, China; Center for Brain Research and Brain-Machine Integration, School of Brain Science and Brain Medicine, Zhejiang University, Hangzhou, Zhejiang Province, China.
| | - Ye Shen
- Department of Ophthalmology, the First Affiliated Hospital of Zhejiang University, Hangzhou, Zhejiang Province, China.
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Guo J, Chi H, Zhang L, Song S, Rossiter SJ, Liu Y. Convergent evolutionary shifts in rhodopsin retinal release explain shared opsin repertoires in monotremes and crocodilians. Proc Biol Sci 2023; 290:20230530. [PMID: 37040807 PMCID: PMC10089720 DOI: 10.1098/rspb.2023.0530] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/13/2023] Open
Abstract
The visual ecology of early mammals remains poorly resolved. Studies of ancestral photopigments suggest an ancient transition from nocturnal to more crepuscular conditions. By contrast, the phenotypic shifts following the split of monotremes and therians-which lost their SWS1 and SWS2 opsins, respectively-are less clear. To address this, we obtained new phenotypic data on the photopigments of extant and ancestral monotremes. We then generated functional data for another vertebrate group that shares the same photopigment repertoire as monotremes: the crocodilians. By characterizing resurrected ancient pigments, we show that the ancestral monotreme underwent a dramatic acceleration in its rhodopsin retinal release rate. Moreover, this change was likely mediated by three residue replacements, two of which also arose on the ancestral branch of crocodilians, which exhibit similarly accelerated retinal release. Despite this parallelism in retinal release, we detected minimal to moderate changes in the spectral tuning of cone visual pigments in these groups. Our results imply that ancestral forms of monotremes and crocodilians independently underwent niche expansion to encompass quickly changing light conditions. This scenario-which accords with reported crepuscular activity in extant monotremes-may help account for their loss of the ultraviolet-sensitive SWS1 pigment but retention of the blue-sensitive SWS2.
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Affiliation(s)
- Jinqu Guo
- College of Life Sciences, Shaanxi Normal University, Xi'an 710119, People's Republic of China
| | - Hai Chi
- College of Life Sciences, Shaanxi Normal University, Xi'an 710119, People's Republic of China
| | - Linghan Zhang
- College of Life Sciences, Shaanxi Normal University, Xi'an 710119, People's Republic of China
| | - Shengjing Song
- College of Life Sciences, Shaanxi Normal University, Xi'an 710119, People's Republic of China
| | - Stephen J Rossiter
- School of Biological and Behavioural Sciences, Queen Mary, University of London, London E1 4NS, UK
| | - Yang Liu
- College of Life Sciences, Shaanxi Normal University, Xi'an 710119, People's Republic of China
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11
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Thüs P, Lunau K, Wester P. Associative colour learning and discrimination in the South African Cape rock sengi Elephantulus edwardii (Macroscelidea, Afrotheria, Mammalia). MAMMALIA 2022. [DOI: 10.1515/mammalia-2022-0034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Abstract
Beside insects, sengis also consume plant material such as leaves, fruits, seeds and floral nectar. It is known that they use olfaction for foraging, but little is known about their vision and visual learning capabilities. Colour vision has been tested in two species, showing that they are likely dichromats (green- and blue-sensitive retinal cone-photoreceptors, meaning red-green colour blind). Our aim was to examine the learning and colour discrimination abilities of another species, Elephantulus edwardii. Using training procedures and choice experiments, we tested the hypotheses that the animals can associate a reward with trained colours and that they can discriminate between different colour hues. The sengis preferred the trained colours over the others, indicating associative learning. They could discriminate between all tested colours (blue, red, green, yellow). The sengis’ colour choice behaviour indicates that the animals can use also colour features to find food plant material. Additionally, learning abilities most likely are essential for the sengis’ foraging activities, for instance by associating floral or fruit shape, colour or scent with nectar or ripe fruit, to increase the efficiency to locate food sources.
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Affiliation(s)
- Patricia Thüs
- Institute of Sensory Ecology , Heinrich-Heine-University , Düsseldorf , Germany
| | - Klaus Lunau
- Institute of Sensory Ecology , Heinrich-Heine-University , Düsseldorf , Germany
| | - Petra Wester
- Institute of Sensory Ecology , Heinrich-Heine-University , Düsseldorf , Germany
- School of Life Sciences , University of KwaZulu-Natal , PB X01 , Pietermaritzburg 3209 , South Africa
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12
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Veilleux CC, Dominy NJ, Melin AD. The sensory ecology of primate food perception, revisited. Evol Anthropol 2022; 31:281-301. [PMID: 36519416 DOI: 10.1002/evan.21967] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Revised: 09/06/2022] [Accepted: 10/23/2022] [Indexed: 12/23/2022]
Abstract
Twenty years ago, Dominy and colleagues published "The sensory ecology of primate food perception," an impactful review that brought new perspectives to understanding primate foraging adaptations. Their review synthesized information on primate senses and explored how senses informed feeding behavior. Research on primate sensory ecology has seen explosive growth in the last two decades. Here, we revisit this important topic, focusing on the numerous new discoveries and lines of innovative research. We begin by reviewing each of the five traditionally recognized senses involved in foraging: audition, olfaction, vision, touch, and taste. For each sense, we provide an overview of sensory function and comparative ecology, comment on the state of knowledge at the time of the original review, and highlight advancements and lingering gaps in knowledge. Next, we provide an outline for creative, multidisciplinary, and innovative future research programs that we anticipate will generate exciting new discoveries in the next two decades.
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Affiliation(s)
- Carrie C Veilleux
- Department of Anatomy, Midwestern University, Glendale, Arizona, USA
| | - Nathaniel J Dominy
- Department of Anthropology, Dartmouth College, Hanover, New Hampshire, USA
| | - Amanda D Melin
- Department of Anthropology and Archaeology, University of Calgary, Calgary, Alberta, Canada.,Department of Medical Genetics, University of Calgary, Calgary, Alberta, Canada.,Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Alberta, Canada
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13
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Liénard MA, Valencia-Montoya WA, Pierce NE. Molecular advances to study the function, evolution and spectral tuning of arthropod visual opsins. Philos Trans R Soc Lond B Biol Sci 2022; 377:20210279. [PMID: 36058235 PMCID: PMC9450095 DOI: 10.1098/rstb.2021.0279] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
Visual opsins of vertebrates and invertebrates diversified independently and converged to detect ultraviolet to long wavelengths (LW) of green or red light. In both groups, colour vision largely derives from opsin number, expression patterns and changes in amino acids interacting with the chromophore. Functional insights regarding invertebrate opsin evolution have lagged behind those for vertebrates because of the disparity in genomic resources and the lack of robust in vitro systems to characterize spectral sensitivities. Here, we review bioinformatic approaches to identify and model functional variation in opsins as well as recently developed assays to measure spectral phenotypes. In particular, we discuss how transgenic lines, cAMP-spectroscopy and sensitive heterologous expression platforms are starting to decouple genotype–phenotype relationships of LW opsins to complement the classical physiological-behavioural-phylogenetic toolbox of invertebrate visual sensory studies. We illustrate the use of one heterologous method by characterizing novel LW Gq opsins from 10 species, including diurnal and nocturnal Lepidoptera, a terrestrial dragonfly and an aquatic crustacean, expressing them in HEK293T cells, and showing that their maximum absorbance spectra (λmax) range from 518 to 611 nm. We discuss the advantages of molecular approaches for arthropods with complications such as restricted availability, lateral filters, specialized photochemistry and/or electrophysiological constraints. This article is part of the theme issue ‘Understanding colour vision: molecular, physiological, neuronal and behavioural studies in arthropods’.
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Affiliation(s)
- Marjorie A Liénard
- Department of Biology, Lund University, 22362 Lund, Sweden.,Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA
| | - Wendy A Valencia-Montoya
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA
| | - Naomi E Pierce
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA
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14
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Nilsson DE, Smolka J, Bok M. The vertical light-gradient and its potential impact on animal distribution and behavior. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.951328] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
Abstract
The visual environment provides vital cues allowing animals to assess habitat quality, weather conditions or measure time of day. Together with other sensory cues and physiological conditions, the visual environment sets behavioral states that make the animal more prone to engage in some behaviors, and less in others. This master-control of behavior serves a fundamental and essential role in determining the distribution and behavior of all animals. Although it is obvious that visual information contains vital input for setting behavioral states, the precise nature of these visual cues remains unknown. Here we use a recently described method to quantify the distribution of light reaching animals’ eyes in different environments. The method records the vertical gradient (as a function of elevation angle) of intensity, spatial structure and spectral balance. Comparison of measurements from different types of environments, weather conditions, times of day, and seasons reveal that these aspects can be readily discriminated from one another. The vertical gradients of radiance, spatial structure (contrast) and color are thus reliable indicators that are likely to have a strong impact on animal behavior and spatial distribution.
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15
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Wu J, Yonezawa T, Kishino H. Molecular Evolutionary Rate Predicts Intraspecific Genetic Polymorphism and Species-Specific Selection. Genes (Basel) 2022; 13:genes13040708. [PMID: 35456514 PMCID: PMC9031814 DOI: 10.3390/genes13040708] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Revised: 04/11/2022] [Accepted: 04/11/2022] [Indexed: 12/04/2022] Open
Abstract
It is unknown what determines genetic diversity and how genetic diversity is associated with various biological traits. In this work, we provide insight into these issues. By comparing genetic variation of 14,671 mammalian gene trees with thousands of individual human, chimpanzee, gorilla, mouse, and dog/wolf genomes, we found that intraspecific genetic diversity can be predicted by long-term molecular evolutionary rates rather than de novo mutation rates. This relationship was established during the early stage of mammalian evolution. Moreover, we developed a method to detect fluctuations of species-specific selection on genes based on the deviations of intraspecific genetic diversity predicted from long-term rates. We showed that the evolution of epithelial cells, rather than connective tissue, mainly contributed to morphological evolution of different species. For humans, evolution of the immune system and selective sweeps caused by infectious diseases are the most representative examples of adaptive evolution.
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Affiliation(s)
- Jiaqi Wu
- Department of Molecular Life Science, Tokai University School of Medicine, Isehara 259-1193, Japan
- Correspondence: (J.W.); (H.K.)
| | - Takahiro Yonezawa
- Faculty of Agriculture, Tokyo University of Agriculture, Atsugi 243-0034, Japan;
| | - Hirohisa Kishino
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo Ward, Tokyo 113-8657, Japan
- The Research Institute of Evolutionary Biology, Tokyo 138-0098, Japan
- AI/Data Science Social Implementation Laboratory, Chuo University, Tokyo 112-8551, Japan
- Correspondence: (J.W.); (H.K.)
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16
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17
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Wandell BA, Brainard DH, Cottaris NP. Visual encoding: Principles and software. PROGRESS IN BRAIN RESEARCH 2022; 273:199-229. [DOI: 10.1016/bs.pbr.2022.04.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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18
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Stephenson BP, Velani Z, Ihász N. The effect of albinism on avian predator attack rates in eastern garter snakes. ZOOLOGY 2021; 150:125987. [PMID: 34971911 DOI: 10.1016/j.zool.2021.125987] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Revised: 12/10/2021] [Accepted: 12/20/2021] [Indexed: 10/19/2022]
Abstract
Albinism is a conspicuous and distinctive phenotype arising from the absence of melanin in the integument that has been documented in all major vertebrate groups. With few exceptions, albinism is rare in natural populations, suggesting that it incurs significant fitness costs as compared to wild-type phenotypes. One possible explanation for this rarity is that albinos experience higher predation risk as compared to wild-type individuals. We tested this hypothesis by comparing rates of attack by avian predators on immobile clay model proxies that mimicked wild-type and albino eastern garter snakes (Thamnophis s. sirtalis) at Bond Swamp in central Georgia, USA; two mixed pattern treatments provided intermediate phenotypes for comparison. Surprisingly, we found no difference in attack rate across all four model treatments, nor among pairs of treatments (i.e., wild-type-like vs. albino-like models). This indicates that albino garter snakes are not subject to higher predation risk from birds due to coloration alone, and that other factors (correlated pathologies of albinism, thermoregulatory challenges, mate selection) are likely to be more important in explaining the rarity of albinism in snakes and perhaps other vertebrate groups.
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Affiliation(s)
- Barry P Stephenson
- 1501 Mercer University Dr., Department of Biology, Mercer University, Macon, GA, 31207, USA.
| | - Zeshan Velani
- 1501 Mercer University Dr., Department of Biology, Mercer University, Macon, GA, 31207, USA; 3001 Mercer University Dr., Mercer University Health Sciences Center, Atlanta, GA, 30341, USA.
| | - Nikolett Ihász
- 1501 Mercer University Dr., Department of Psychology, Mercer University, Macon, GA, 31207, USA.
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19
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Page RA, ter Hofstede HM. Sensory and Cognitive Ecology of Bats. ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS 2021. [DOI: 10.1146/annurev-ecolsys-012921-052635] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
We see stunning morphological diversity across the animal world. Less conspicuous but equally fascinating are the sensory and cognitive adaptations that determine animals’ interactions with their environments and each other. We discuss the development of the fields of sensory and cognitive ecology and the importance of integrating these fields to understand the evolution of adaptive behaviors. Bats, with their extraordinarily high ecological diversity, are ideal animals for this purpose. An explosion in recent research allows for better understanding of the molecular, genetic, neural, and behavioral bases for sensory ecology and cognition in bats. We give examples of studies that illuminate connections between sensory and cognitive features of information filtering, evolutionary trade-offs in sensory and cognitive processing, and multimodal sensing and integration. By investigating the selective pressures underlying information acquisition, processing, and use in bats, we aim to illuminate patterns and processes driving sensory and cognitive evolution.
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Affiliation(s)
- Rachel A. Page
- Smithsonian Tropical Research Institute, Apartado 0843–03092, Balboa, Ancón, República de Panamá
| | - Hannah M. ter Hofstede
- Smithsonian Tropical Research Institute, Apartado 0843–03092, Balboa, Ancón, República de Panamá
- Department of Biological Sciences, Dartmouth College, Hanover, New Hampshire 03755, USA
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20
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Ogawa Y, Shiraki T, Fukada Y, Kojima D. Foxq2 determines blue cone identity in zebrafish. SCIENCE ADVANCES 2021; 7:eabi9784. [PMID: 34613771 PMCID: PMC8494292 DOI: 10.1126/sciadv.abi9784] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2021] [Accepted: 08/13/2021] [Indexed: 05/26/2023]
Abstract
Most vertebrate lineages retain a tetrachromatic visual system, which is supported by a functional combination of spectrally distinct multiple cone photoreceptors, ultraviolet (UV), blue, green, and red cones. The blue cone identity is ensured by selective expression of blue (sws2) opsin, and the mechanism is poorly understood because sws2 gene has been lost in mammalian species such as mouse, whose visual system has been extensively studied. Here, we pursued loss-of-function studies on transcription factors expressed predominantly in zebrafish cone photoreceptors and identified Foxq2 as a blue cone–specific factor driving sws2 gene expression. Foxq2 has dual functions acting as an activator of sws2 transcription and as a suppressor of UV (sws1) opsin transcription in blue cones. A wide range of vertebrate species retain both foxq2 and sws2 genes. We propose that Foxq2-dependent sws2 expression is a prevalent regulatory mechanism that was acquired at the early stage of vertebrate evolution.
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21
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Postema EG. The effectiveness of eyespots and masquerade in protecting artificial prey across ontogenetic and seasonal shifts. Curr Zool 2021; 68:451-458. [PMID: 36090146 PMCID: PMC9450170 DOI: 10.1093/cz/zoab082] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2021] [Accepted: 09/28/2021] [Indexed: 12/25/2022] Open
Abstract
When constraints on antipredator coloration shift over the course of development, it can be advantageous for animals to adopt different color strategies for each life stage. Many caterpillars in the genus Papilio exhibit unique ontogenetic color sequences: for example, early instars that masquerade as bird feces, with later instars possessing eyespots. I hypothesize that larvae abandon feces masquerade in favor of eyespots due to ontogenetic changes in signaler size. This ontogenetic pattern also occurs within broader seasonal shifts in background color and predator activity. I conducted predation experiments with artificial prey to determine how potential signaling constraints (specifically size and season) shape predation risk, and consequently the expression of ontogenetic color change in Papilio larvae. Seasonally, both predation and background greenness declined significantly from July to September, though there was little evidence that these patterns impacted the effectiveness of either color strategy. Caterpillar size and color strongly affected the attack rate of avian predators: attacks increased with prey size regardless of color, and eyespotted prey were attacked more than masquerading prey overall. These results may reflect a key size-mediated tradeoff between conspicuousness and intimidation in eyespotted prey, and raise questions about how interwoven aspects of behavior and signal environment might maintain the prevalence of large, eyespotted larvae in nature.
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Affiliation(s)
- Elizabeth G Postema
- Department of Entomology and Nematology, University of California, Davis, CA 95616, USA
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22
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The primary visual cortex of Cetartiodactyls: organization, cytoarchitectonics and comparison with perissodactyls and primates. Brain Struct Funct 2021; 227:1195-1225. [PMID: 34604923 PMCID: PMC9046356 DOI: 10.1007/s00429-021-02392-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2021] [Accepted: 09/19/2021] [Indexed: 12/24/2022]
Abstract
Cetartiodactyls include terrestrial and marine species, all generally endowed with a comparatively lateral position of their eyes and a relatively limited binocular field of vision. To this day, our understanding of the visual system in mammals beyond the few studied animal models remains limited. In the present study, we examined the primary visual cortex of Cetartiodactyls that live on land (sheep, Père David deer, giraffe); in the sea (bottlenose dolphin, Risso’s dolphin, long-finned pilot whale, Cuvier’s beaked whale, sperm whale and fin whale); or in an amphibious environment (hippopotamus). We also sampled and studied the visual cortex of the horse (a closely related perissodactyl) and two primates (chimpanzee and pig-tailed macaque) for comparison. Our histochemical and immunohistochemical results indicate that the visual cortex of Cetartiodactyls is characterized by a peculiar organization, structure, and complexity of the cortical column. We noted a general lesser lamination compared to simians, with diminished density, and an apparent simplification of the intra- and extra-columnar connections. The presence and distribution of calcium-binding proteins indicated a notable absence of parvalbumin in water species and a strong reduction of layer 4, usually enlarged in the striated cortex, seemingly replaced by a more diffuse distribution in neighboring layers. Consequently, thalamo-cortical inputs are apparently directed to the higher layers of the column. Computer analyses and statistical evaluation of the data confirmed the results and indicated a substantial correlation between eye placement and cortical structure, with a markedly segregated pattern in cetaceans compared to other mammals. Furthermore, cetacean species showed several types of cortical lamination which may reflect differences in function, possibly related to depth of foraging and consequent progressive disappearance of light, and increased importance of echolocation.
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23
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Ogawa Y, Corbo JC. Partitioning of gene expression among zebrafish photoreceptor subtypes. Sci Rep 2021; 11:17340. [PMID: 34462505 PMCID: PMC8405809 DOI: 10.1038/s41598-021-96837-z] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Accepted: 08/17/2021] [Indexed: 02/07/2023] Open
Abstract
Vertebrate photoreceptors are categorized into two broad classes, rods and cones, responsible for dim- and bright-light vision, respectively. While many molecular features that distinguish rods and cones are known, gene expression differences among cone subtypes remain poorly understood. Teleost fishes are renowned for the diversity of their photoreceptor systems. Here, we used single-cell RNA-seq to profile adult photoreceptors in zebrafish, a teleost. We found that in addition to the four canonical zebrafish cone types, there exist subpopulations of green and red cones (previously shown to be located in the ventral retina) that express red-shifted opsin paralogs (opn1mw4 or opn1lw1) as well as a unique combination of cone phototransduction genes. Furthermore, the expression of many paralogous phototransduction genes is partitioned among cone subtypes, analogous to the partitioning of the phototransduction paralogs between rods and cones seen across vertebrates. The partitioned cone-gene pairs arose via the teleost-specific whole-genome duplication or later clade-specific gene duplications. We also discovered that cone subtypes express distinct transcriptional regulators, including many factors not previously implicated in photoreceptor development or differentiation. Overall, our work suggests that partitioning of paralogous gene expression via the action of differentially expressed transcriptional regulators enables diversification of cone subtypes in teleosts.
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Affiliation(s)
- Yohey Ogawa
- Department of Pathology and Immunology, Washington University School of Medicine, 660 South Euclid Avenue, St. Louis, MO, 63110-1093, USA
| | - Joseph C Corbo
- Department of Pathology and Immunology, Washington University School of Medicine, 660 South Euclid Avenue, St. Louis, MO, 63110-1093, USA.
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24
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Neitz M, Neitz J. Intermixing the OPN1LW and OPN1MW Genes Disrupts the Exonic Splicing Code Causing an Array of Vision Disorders. Genes (Basel) 2021; 12:genes12081180. [PMID: 34440353 PMCID: PMC8391646 DOI: 10.3390/genes12081180] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 07/27/2021] [Accepted: 07/29/2021] [Indexed: 02/07/2023] Open
Abstract
Light absorption by photopigment molecules expressed in the photoreceptors in the retina is the first step in seeing. Two types of photoreceptors in the human retina are responsible for image formation: rods, and cones. Except at very low light levels when rods are active, all vision is based on cones. Cones mediate high acuity vision and color vision. Furthermore, they are critically important in the visual feedback mechanism that regulates refractive development of the eye during childhood. The human retina contains a mosaic of three cone types, short-wavelength (S), long-wavelength (L), and middle-wavelength (M) sensitive; however, the vast majority (~94%) are L and M cones. The OPN1LW and OPN1MW genes, located on the X-chromosome at Xq28, encode the protein component of the light-sensitive photopigments expressed in the L and M cones. Diverse haplotypes of exon 3 of the OPN1LW and OPN1MW genes arose thru unequal recombination mechanisms that have intermixed the genes. A subset of the haplotypes causes exon 3- skipping during pre-messenger RNA splicing and are associated with vision disorders. Here, we review the mechanism by which splicing defects in these genes cause vision disorders.
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25
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The genomics of ecological flexibility, large brains, and long lives in capuchin monkeys revealed with fecalFACS. Proc Natl Acad Sci U S A 2021; 118:2010632118. [PMID: 33574059 PMCID: PMC7896301 DOI: 10.1073/pnas.2010632118] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Surviving challenging environments, living long lives, and engaging in complex cognitive processes are hallmark human characteristics. Similar traits have evolved in parallel in capuchin monkeys, but their genetic underpinnings remain unexplored. We developed and annotated a reference assembly for white-faced capuchin monkeys to explore the evolution of these phenotypes. By comparing populations of capuchins inhabiting rainforest versus dry forests with seasonal droughts, we detected selection in genes associated with kidney function, muscular wasting, and metabolism, suggesting adaptation to periodic resource scarcity. When comparing capuchins to other mammals, we identified evidence of selection in multiple genes implicated in longevity and brain development. Our research was facilitated by our method to generate high- and low-coverage genomes from noninvasive biomaterials. Ecological flexibility, extended lifespans, and large brains have long intrigued evolutionary biologists, and comparative genomics offers an efficient and effective tool for generating new insights into the evolution of such traits. Studies of capuchin monkeys are particularly well situated to shed light on the selective pressures and genetic underpinnings of local adaptation to diverse habitats, longevity, and brain development. Distributed widely across Central and South America, they are inventive and extractive foragers, known for their sensorimotor intelligence. Capuchins have among the largest relative brain size of any monkey and a lifespan that exceeds 50 y, despite their small (3 to 5 kg) body size. We assemble and annotate a de novo reference genome for Cebus imitator. Through high-depth sequencing of DNA derived from blood, various tissues, and feces via fluorescence-activated cell sorting (fecalFACS) to isolate monkey epithelial cells, we compared genomes of capuchin populations from tropical dry forests and lowland rainforests and identified population divergence in genes involved in water balance, kidney function, and metabolism. Through a comparative genomics approach spanning a wide diversity of mammals, we identified genes under positive selection associated with longevity and brain development. Additionally, we provide a technological advancement in the use of noninvasive genomics for studies of free-ranging mammals. Our intra- and interspecific comparative study of capuchin genomics provides insights into processes underlying local adaptation to diverse and physiologically challenging environments, as well as the molecular basis of brain evolution and longevity.
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26
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Martin LF, Moutal A, Cheng K, Washington SM, Calligaro H, Goel V, Kranz T, Largent-Milnes TM, Khanna R, Patwardhan A, Ibrahim MM. Green Light Antinociceptive and Reversal of Thermal and Mechanical Hypersensitivity Effects Rely on Endogenous Opioid System Stimulation. THE JOURNAL OF PAIN 2021; 22:1646-1656. [PMID: 34157406 DOI: 10.1016/j.jpain.2021.05.006] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Revised: 05/12/2021] [Accepted: 05/23/2021] [Indexed: 12/17/2022]
Abstract
Benefits of phototherapy were characterized in multiple diseases including depression, circadian rhythm disruptions, and neurodegeneration. Studies on migraine and fibromyalgia patients revealed that green light-emitting diodes (GLED) exposure provides a pragmatic and safe therapy to manage chronic pain. In rodents, GLED reversed hypersensitivity related to neuropathic pain. However, little is known about the underlying mechanisms of GLED efficacy. Here, we sought to understand how green light modulates the endogenous opioid system. We first characterized how exposure to GLED stimulates release of β-endorphin and proenkephalin in the central nervous system of male rats. Moreover, by individually editing each of the receptors, we found that µ- and δ-opioid receptors are required for green light's antinociceptive effect in naïve rats and a model of HIV-induced peripheral neuropathy. We investigated how GLED could increase pain thresholds, and explored its potential in reversing hypersensitivity in a model of HIV-related neuropathy. Through behavioral and gene editing approaches, we identified that green light provides antinociception via modulation of the endogenous opioid system in the spinal cord. This work identifies a previously unknown mechanism by which GLED can improve pain management. Clinical translation of these results will advance the development of an innovative therapy devoid of adverse effects. PERSPECTIVE: Development of new pain management therapies, especially for HIV patients, is crucial as long-term opioid prescription is not recommended due to adverse side effects. Green light addresses this necessity. Characterizing the underlying mechanisms of this potentially groundbreaking and safe antinociceptive therapy will advance its clinical translation.
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Affiliation(s)
- Laurent F Martin
- Department of Pharmacology, College of Medicine, The University of Arizona, Tucson, Arizona; Department of Anesthesiology, College of Medicine, The University of Arizona, Tucson, Arizona
| | - Aubin Moutal
- Department of Pharmacology, College of Medicine, The University of Arizona, Tucson, Arizona
| | - Kevin Cheng
- Department of Pharmacology, College of Medicine, The University of Arizona, Tucson, Arizona
| | - Stephanie M Washington
- Department of Anesthesiology, College of Medicine, The University of Arizona, Tucson, Arizona
| | - Hugo Calligaro
- Regulatory Biology Laboratory, Salk Institute for Biological Studies, San Diego, California
| | - Vasudha Goel
- Department of Anesthesiology, The University of Minnesota Medical School, Minneapolis, Minnesota
| | - Tracy Kranz
- Department of Anesthesiology, College of Medicine, The University of Arizona, Tucson, Arizona
| | - Tally M Largent-Milnes
- Department of Pharmacology, College of Medicine, The University of Arizona, Tucson, Arizona
| | - Rajesh Khanna
- Department of Pharmacology, College of Medicine, The University of Arizona, Tucson, Arizona; Department of Anesthesiology, College of Medicine, The University of Arizona, Tucson, Arizona; Neuroscience Graduate Interdisciplinary Program, College of Medicine, The University of Arizona, Tucson, Arizona; The Center for Innovation in Brain Sciences, The University of Arizona Health Sciences, Tucson, Arizona; Comprehensive Pain and Addiction Center, The University of Arizona, Tucson, Arizona
| | - Amol Patwardhan
- Department of Pharmacology, College of Medicine, The University of Arizona, Tucson, Arizona; Department of Anesthesiology, College of Medicine, The University of Arizona, Tucson, Arizona; Department of Neurosurgery, College of Medicine, The University of Arizona, Tucson, Arizona; Comprehensive Pain and Addiction Center, The University of Arizona, Tucson, Arizona
| | - Mohab M Ibrahim
- Department of Pharmacology, College of Medicine, The University of Arizona, Tucson, Arizona; Department of Anesthesiology, College of Medicine, The University of Arizona, Tucson, Arizona; Department of Neurosurgery, College of Medicine, The University of Arizona, Tucson, Arizona; Comprehensive Pain and Addiction Center, The University of Arizona, Tucson, Arizona.
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27
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Abstract
The use of spectral information in natural light to inform behaviour is one of the oldest and most fundamental abilities of visual systems. It long-predates animals' venture onto the land, and even the appearance of image-forming eyes. Accordingly, circuits for colour vision evolved under the surface of ancient oceans for hundreds of millions of years. These aquatic beginnings fundamentally underpin, and likely constrain, the organisation of modern visual systems. In contrast to our detailed circuit level understanding from diverse terrestrial vertebrates, however, comparatively little is known about their aquatic counterparts. Here, I summarise some of what is known about neural circuits for colour vision in fish, the most species-diverse group of vertebrates. With a focus on zebrafish, I will explore how their computational strategies are linked to the statistics of natural light in the underwater world, and how their study might help us understand vision in general, including in our own eyes.
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28
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Brem EA, Israelsen WJ. Courtship behavior of the meadow jumping mouse ( Zapus hudsonius). WEST N AM NATURALIST 2021; 81:267-272. [PMID: 34290569 PMCID: PMC8291725] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
We describe the first recorded observations of courtship behavior of the meadow jumping mouse (Zapus hudsonius) made in wild-caught and captive-reared animals. Male meadow jumping mice performed a series of courtship behaviors upon approach to the female, including rapid fanning of the muzzle with the forelimbs, self-grooming, muzzle fanning, retreat, and eventual mounting attempts. During courtship, female jumping mice may retreat, ignore the courting male, or bat at the male with forelimbs until the male retreats. Active rejection of courting males by the female is suggestive of female mate choice in this species.
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Affiliation(s)
- Ethan A. Brem
- Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75309
| | - William J. Israelsen
- Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75309
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29
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Sinnott-Armstrong MA, Donoghue MJ, Jetz WJ. Dispersers and environment drive global variation in fruit colour syndromes. Ecol Lett 2021; 24:1387-1399. [PMID: 33908685 DOI: 10.1111/ele.13753] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Revised: 03/10/2021] [Accepted: 03/14/2021] [Indexed: 02/06/2023]
Abstract
The colours of fleshy fruits play a critical role in plant dispersal by advertising ripe fruits to consumers. Fruit colours have long been classified into syndromes attributed to selection by animal dispersers, despite weak evidence for this hypothesis. Here, we test the relative importance of biotic (bird and mammal frugivory) and abiotic (wet season temperatures, growing season length and UV-B radiation) factors in determining fruit colour syndrome in 3163 species of fleshy-fruited plants. We find that both dispersers and environment are important, and they interact. In warm areas, contrastive, bird-associated fruit colours increase with relative bird frugivore prevalence, whereas in cold places these colours dominate even where mammalian dispersers are prevalent. We present near-global maps of predicted fruit colour syndrome based on our species-level model and our newly developed characterisations of relative importance of bird and mammal frugivores.
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Affiliation(s)
| | - Michael J Donoghue
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA
| | - Walter J Jetz
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA.,Center for Biodiversity and Global Change, Yale University, New Haven, CT, USA
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30
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DePasquale AN, Webb SE, Williamson RE, Fedigan LM, Melin AD. Testing the niche differentiation hypothesis in wild capuchin monkeys with polymorphic color vision. Behav Ecol 2021. [DOI: 10.1093/beheco/arab001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Abstract
The polymorphic color vision system present in most North, Central, and South American monkeys is a textbook case of balancing selection, yet the mechanism behind it remains poorly understood. Previous work has established task-specific foraging advantages to different color vision phenotypes: dichromats (red-green colorblind) are more efficient foraging for invertebrates, while trichromats (color “normal” relative to humans) are more efficient foraging for “reddish” ripe fruit, suggesting that niche differentiation may underlie the maintenance of color vision variation. We explore a prediction of the niche differentiation hypothesis by asking whether dichromatic and trichromatic capuchin monkeys (Cebus imitator) diverge in their foraging activity budget, specifically testing whether dichromats forage more frequently for invertebrates and trichromats forage more frequently for “reddish” ripe fruit. To assess this, we analyze a large data set of behavioral scan samples (n = 21 984) from 48 wild adult female capuchins of known color vision genotype, dominance rank, and reproductive status, together with models of food conspicuity. We find no significant differences between dichromats and trichromats in the frequency of scans spent foraging for different food types but do find that nursing females forage less overall than cycling females. Our results suggest that the potential for color-vision-based niche differentiation in foraging time may be curtailed by the energetic requirements of reproduction, behavioral synchrony caused by group living, and/or individual preferences. While niche differentiation in activity budgets by color vision type is not apparent, fine-scale niche differentiation may be occurring. This research enhances our understanding of the evolutionary processes maintaining sensory polymorphisms.
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Affiliation(s)
- Allegra N DePasquale
- Department of Anthropology and Archaeology, University of Calgary, 2500 University Dr NW, Calgary, AB T2N 1N4, Canada
| | - Shasta E Webb
- Department of Anthropology and Archaeology, University of Calgary, 2500 University Dr NW, Calgary, AB T2N 1N4, Canada
| | - Rachel E Williamson
- Department of Anthropology and Archaeology, University of Calgary, 2500 University Dr NW, Calgary, AB T2N 1N4, Canada
| | - Linda M Fedigan
- Department of Anthropology and Archaeology, University of Calgary, 2500 University Dr NW, Calgary, AB T2N 1N4, Canada
| | - Amanda D Melin
- Department of Anthropology and Archaeology, University of Calgary, 2500 University Dr NW, Calgary, AB T2N 1N4, Canada
- Department of Medical Genetics, Cumming School of Medicine, University of Calgary, 3330 Hospital Dr NW, Calgary, AB T2N 4N1, Canada
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31
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Hoover KC. Sensory disruption and sensory inequities in the Anthropocene. Evol Anthropol 2021; 30:128-140. [PMID: 33580579 DOI: 10.1002/evan.21882] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2019] [Revised: 02/27/2020] [Accepted: 10/21/2020] [Indexed: 12/20/2022]
Abstract
Anthropogenic disruptions to animal sensory ecology are as old as our species. But what about the effect on human sensory ecology? Human sensory dysfunction is increasing globally at great economic and health costs (mental, physical, and social). Contemporary sensory problems are directly tied to human behavioral changes and activity as well as anthropogenic pollution. The evolutionary sensory ecology and anthropogenic disruptions to three human senses (vision, audition, olfaction) are examined along with the economic and health costs of functionally reduced senses and demographic risk factors contributing to impairment. The primary goals of the paper are (a) to sew an evolutionary and ecological thread through clinical narratives on sensory dysfunction that highlights the impact of the built environment on the senses, and (b) to highlight structural, demographic, and environmental injustices that create sensory inequities in risk and that promote health disparities.
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Affiliation(s)
- Kara C Hoover
- Department of Anthropology, University of Alaska, Fairbanks, Alaska, USA
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32
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Liénard MA, Bernard GD, Allen A, Lassance JM, Song S, Childers RR, Yu N, Ye D, Stephenson A, Valencia-Montoya WA, Salzman S, Whitaker MRL, Calonje M, Zhang F, Pierce NE. The evolution of red color vision is linked to coordinated rhodopsin tuning in lycaenid butterflies. Proc Natl Acad Sci U S A 2021; 118:e2008986118. [PMID: 33547236 PMCID: PMC8017955 DOI: 10.1073/pnas.2008986118] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Color vision has evolved multiple times in both vertebrates and invertebrates and is largely determined by the number and variation in spectral sensitivities of distinct opsin subclasses. However, because of the difficulty of expressing long-wavelength (LW) invertebrate opsins in vitro, our understanding of the molecular basis of functional shifts in opsin spectral sensitivities has been biased toward research primarily in vertebrates. This has restricted our ability to address whether invertebrate Gq protein-coupled opsins function in a novel or convergent way compared to vertebrate Gt opsins. Here we develop a robust heterologous expression system to purify invertebrate rhodopsins, identify specific amino acid changes responsible for adaptive spectral tuning, and pinpoint how molecular variation in invertebrate opsins underlie wavelength sensitivity shifts that enhance visual perception. By combining functional and optophysiological approaches, we disentangle the relative contributions of lateral filtering pigments from red-shifted LW and blue short-wavelength opsins expressed in distinct photoreceptor cells of individual ommatidia. We use in situ hybridization to visualize six ommatidial classes in the compound eye of a lycaenid butterfly with a four-opsin visual system. We show experimentally that certain key tuning residues underlying green spectral shifts in blue opsin paralogs have evolved repeatedly among short-wavelength opsin lineages. Taken together, our results demonstrate the interplay between regulatory and adaptive evolution at multiple Gq opsin loci, as well as how coordinated spectral shifts in LW and blue opsins can act together to enhance insect spectral sensitivity at blue and red wavelengths for visual performance adaptation.
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Affiliation(s)
- Marjorie A Liénard
- Broad Institute of MIT and Harvard University, Cambridge, MA 02142;
- Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138
| | - Gary D Bernard
- Department of Electrical and Computer Engineering, University of Washington, Seattle, WA 98195
| | - Andrew Allen
- Broad Institute of MIT and Harvard University, Cambridge, MA 02142
| | - Jean-Marc Lassance
- Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138
| | - Siliang Song
- Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138
| | - Richard Rabideau Childers
- Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138
| | - Nanfang Yu
- Department of Applied Physics and Applied Mathematics, Columbia University, New York, NY 10027
| | - Dajia Ye
- Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138
| | - Adriana Stephenson
- Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138
| | - Wendy A Valencia-Montoya
- Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138
| | - Shayla Salzman
- Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138
| | - Melissa R L Whitaker
- Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138
| | | | - Feng Zhang
- Broad Institute of MIT and Harvard University, Cambridge, MA 02142
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139
- Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139
- Howard Hughes Medical Institute, Cambridge, MA 02139
| | - Naomi E Pierce
- Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138;
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33
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Sadier A, Urban DJ, Anthwal N, Howenstine AO, Sinha I, Sears KE. Making a bat: The developmental basis of bat evolution. Genet Mol Biol 2021; 43:e20190146. [PMID: 33576369 PMCID: PMC7879332 DOI: 10.1590/1678-4685-gmb-2019-0146] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Accepted: 12/11/2020] [Indexed: 11/28/2022] Open
Abstract
Bats are incredibly diverse, both morphologically and taxonomically. Bats are the only mammalian group to have achieved powered flight, an adaptation that is hypothesized to have allowed them to colonize various and diverse ecological niches. However, the lack of fossils capturing the transition from terrestrial mammal to volant chiropteran has obscured much of our understanding of bat evolution. Over the last 20 years, the emergence of evo-devo in non-model species has started to fill this gap by uncovering some developmental mechanisms at the origin of bat diversification. In this review, we highlight key aspects of studies that have used bats as a model for morphological adaptations, diversification during adaptive radiations, and morphological novelty. To do so, we review current and ongoing studies on bat evolution. We first investigate morphological specialization by reviewing current knowledge about wing and face evolution. Then, we explore the mechanisms behind adaptive diversification in various ecological contexts using vision and dentition. Finally, we highlight the emerging work into morphological novelties using bat wing membranes.
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Affiliation(s)
- Alexa Sadier
- University of California at Los Angeles, Department of Ecology and Evolutionary Biology, Los Angeles, USA
| | - Daniel J Urban
- University of California at Los Angeles, Department of Ecology and Evolutionary Biology, Los Angeles, USA.,American Museum of Natural History, Department of Mammalogy, New York, USA
| | - Neal Anthwal
- University of California at Los Angeles, Department of Ecology and Evolutionary Biology, Los Angeles, USA
| | - Aidan O Howenstine
- University of California at Los Angeles, Department of Ecology and Evolutionary Biology, Los Angeles, USA
| | - Ishani Sinha
- University of California at Los Angeles, Department of Ecology and Evolutionary Biology, Los Angeles, USA
| | - Karen E Sears
- University of California at Los Angeles, Department of Ecology and Evolutionary Biology, Los Angeles, USA
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34
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Abstract
Color is a fundamental aspect of normal visual experience. This chapter provides an overview of the role of color in human behavior, a survey of current knowledge regarding the genetic, retinal, and neural mechanisms that enable color vision, and a review of inherited and acquired defects of color vision including a discussion of diagnostic tests.
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Affiliation(s)
- Joseph Carroll
- Department of Ophthalmology & Visual Sciences, Medical College of Wisconsin, Milwaukee, WI, United States.
| | - Bevil R Conway
- Laboratory of Sensorimotor Research, National Eye Institute, National Institute of Mental Health, Bethesda, MD, United States.
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35
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Hart NS, Lamb TD, Patel HR, Chuah A, Natoli RC, Hudson NJ, Cutmore SC, Davies WIL, Collin SP, Hunt DM. Visual Opsin Diversity in Sharks and Rays. Mol Biol Evol 2020; 37:811-827. [PMID: 31770430 DOI: 10.1093/molbev/msz269] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Abstract
The diversity of color vision systems found in extant vertebrates suggests that different evolutionary selection pressures have driven specializations in photoreceptor complement and visual pigment spectral tuning appropriate for an animal's behavior, habitat, and life history. Aquatic vertebrates in particular show high variability in chromatic vision and have become important models for understanding the role of color vision in prey detection, predator avoidance, and social interactions. In this study, we examined the capacity for chromatic vision in elasmobranch fishes, a group that have received relatively little attention to date. We used microspectrophotometry to measure the spectral absorbance of the visual pigments in the outer segments of individual photoreceptors from several ray and shark species, and we sequenced the opsin mRNAs obtained from the retinas of the same species, as well as from additional elasmobranch species. We reveal the phylogenetically widespread occurrence of dichromatic color vision in rays based on two cone opsins, RH2 and LWS. We also confirm that all shark species studied to date appear to be cone monochromats but report that in different species the single cone opsin may be of either the LWS or the RH2 class. From this, we infer that cone monochromacy in sharks has evolved independently on multiple occasions. Together with earlier discoveries in secondarily aquatic marine mammals, this suggests that cone-based color vision may be of little use for large marine predators, such as sharks, pinnipeds, and cetaceans.
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Affiliation(s)
- Nathan S Hart
- Department of Biological Sciences, Macquarie University, North Ryde, NSW, Australia
| | - Trevor D Lamb
- Eccles Institute of Neuroscience, John Curtin School of Medical Research, The Australian National University, Canberra, ACT, Australia
| | - Hardip R Patel
- Department of Genome Sciences, John Curtin School of Medical Research, The Australian National University, Canberra, ACT, Australia
| | - Aaron Chuah
- Department of Immunology and Infectious Disease, John Curtin School of Medical Research, The Australian National University, Canberra, ACT, Australia
| | - Riccardo C Natoli
- Eccles Institute of Neuroscience, John Curtin School of Medical Research, The Australian National University, Canberra, ACT, Australia.,ANU Medical School, The Australian National University, Canberra, ACT, Australia
| | - Nicholas J Hudson
- School of Agriculture and Food Sciences, The University of Queensland, St Lucia, QLD, Australia
| | - Scott C Cutmore
- School of Biological Sciences, The University of Queensland, St Lucia, QLD, Australia
| | - Wayne I L Davies
- Umeå Centre for Molecular Medicine (UCMM), Umeå University, Umeå, Sweden
| | - Shaun P Collin
- School of Life Sciences, La Trobe University, Bundoora, VIC, Australia
| | - David M Hunt
- School of Biological Sciences, The University of Western Australia, Crawley, WA, Australia.,Centre for Ophthalmology and Visual Science, Lions Eye Institute, The University of Western Australia, Crawley, WA, Australia
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36
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Pegoraro M, Flavell LMM, Menegazzi P, Colombi P, Dao P, Helfrich-Förster C, Tauber E. The genetic basis of diurnal preference in Drosophila melanogaster. BMC Genomics 2020; 21:596. [PMID: 32862827 PMCID: PMC7457780 DOI: 10.1186/s12864-020-07020-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Accepted: 08/24/2020] [Indexed: 12/31/2022] Open
Abstract
Background Most animals restrict their activity to a specific part of the day, being diurnal, nocturnal or crepuscular. The genetic basis underlying diurnal preference is largely unknown. Under laboratory conditions, Drosophila melanogaster is crepuscular, showing a bi-modal activity profile. However, a survey of strains derived from wild populations indicated that high variability among individuals exists, including flies that are nocturnal. Results Using a highly diverse population, we performed an artificial selection experiment, selecting flies with extreme diurnal or nocturnal preference. After 10 generations, we obtained highly diurnal and nocturnal strains. We used whole-genome expression analysis to identify differentially expressed genes in diurnal, nocturnal and crepuscular (control) flies. Other than one circadian clock gene (pdp1), most differentially expressed genes were associated with either clock output (pdf, to) or input (Rh3, Rh2, msn). This finding was congruent with behavioural experiments indicating that both light masking and the circadian pacemaker are involved in driving nocturnality. Conclusions Our study demonstrates that genetic variation segregating in wild populations contributes to substantial variation in diurnal preference. We identified candidate genes associated with diurnality/nocturnality, while data emerging from our expression analysis and behavioural experiments suggest that both clock and clock-independent pathways are involved in shaping diurnal preference. The diurnal and nocturnal selection strains provide us with a unique opportunity to understand the genetic architecture of diurnal preference.
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Affiliation(s)
- Mirko Pegoraro
- Department of Genetics and Genome Biology, University of Leicester, University Road, Leicester, LE1 7RH, UK.,School of Natural Science and Psychology, Liverpool John Moores University, Liverpool, L3 3AF, UK
| | - Laura M M Flavell
- Department of Genetics and Genome Biology, University of Leicester, University Road, Leicester, LE1 7RH, UK
| | - Pamela Menegazzi
- Neurobiology and Genetics, Biocenter, University of Würzburg, Würzburg, Germany
| | - Perrine Colombi
- Department of Genetics and Genome Biology, University of Leicester, University Road, Leicester, LE1 7RH, UK
| | - Pauline Dao
- Department of Genetics and Genome Biology, University of Leicester, University Road, Leicester, LE1 7RH, UK
| | | | - Eran Tauber
- Department of Genetics and Genome Biology, University of Leicester, University Road, Leicester, LE1 7RH, UK. .,Department of Evolutionary and Environmental Biology and Institute of Evolution, University of Haifa, 3498838, Haifa, Israel.
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37
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de Solan T, Renoult JP, Geniez P, David P, Crochet PA. Looking for Mimicry in a Snake Assemblage Using Deep Learning. Am Nat 2020; 196:74-86. [DOI: 10.1086/708763] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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38
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Abstract
Finding the right lure for trapping pest insects is difficult. The typical smell of rain and humid soil, geosmin, now turns out to be a strong attractant for the yellow fever mosquito Aedes aegypti.
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Affiliation(s)
- Giovanni Galizia
- Department of Neuroscience, University of Konstanz, D-78457 Konstanz, Germany.
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39
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Gawne TJ, Norton TT. An opponent dual-detector spectral drive model of emmetropization. Vision Res 2020; 173:7-20. [PMID: 32445984 DOI: 10.1016/j.visres.2020.03.011] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2019] [Revised: 03/21/2020] [Accepted: 03/25/2020] [Indexed: 02/03/2023]
Abstract
In post-natal developing eyes a feedback mechanism uses optical cues to regulate axial growth so as to achieve good focus, a process termed emmetropization. However, the optical cues that the feedback mechanism uses have remained unclear. Here we present evidence that a primary visual cue may be the detection of different image statistics by the short-wavelength sensitive (SWS) and long-wavelength sensitive (LWS) cone photoreceptors, caused by longitudinal chromatic aberration (LCA). We use as a model system the northern tree shrew Tupaia belangeri, diurnal cone-dominated dichromatic mammals closely related to primates. We present an optical model in which the SWS and LWS photoreceptors each represent an image at different levels of defocus. The model posits that an imbalance between SWS and LWS image statistics directs eye growth towards the point at which these image statistics are in balance. Under spectrally broadband ("white") lighting, the focus of the eye is driven to a target point approximately in the middle of the visible spectrum, which is emmetropia. Calculations suggest that the SWS cone array, despite the sparse number of SWS cones, can plausibly detect the wavelength-dependent differences in defocus and guide refractive development. The model is consistent with the effects of various narrow-band illuminants on emmetropization in tree shrews. Simulations suggest that common artificial light spectra do not interfere with emmetropization. Simulations also suggest that multi-spectral multi-focal lenses, where the different optical zones of a multifocal lens have different spectral filtering properties, could be an anti-myopia intervention.
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Affiliation(s)
- Timothy J Gawne
- Dept. of Optometry and Vision Science, University of Alabama at Birmingham (UAB), Birmingham, AL, United States.
| | - Thomas T Norton
- Dept. of Optometry and Vision Science, University of Alabama at Birmingham (UAB), Birmingham, AL, United States
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40
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Trade-off Between Thermal Quality and Predation Risk at Timber Rattlesnake Gestation Sites. J HERPETOL 2020. [DOI: 10.1670/18-073] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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41
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Harmel MV, Crowell HL, Whelan JM, Taylor EN. Rattlesnake colouration affects detection by predators. J Zool (1987) 2020. [DOI: 10.1111/jzo.12786] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- M. V. Harmel
- Biological Sciences Department California Polytechnic State University San Luis Obispo CA USA
| | - H. L. Crowell
- Biological Sciences Department California Polytechnic State University San Luis Obispo CA USA
| | - J. M. Whelan
- Biological Sciences Department California Polytechnic State University San Luis Obispo CA USA
| | - E. N. Taylor
- Biological Sciences Department California Polytechnic State University San Luis Obispo CA USA
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42
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Valenta K, Nevo O. The dispersal syndrome hypothesis: How animals shaped fruit traits, and how they did not. Funct Ecol 2020. [DOI: 10.1111/1365-2435.13564] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Kim Valenta
- Department of Anthropology University of Florida Gainesville FL USA
| | - Omer Nevo
- Institute of Evolutionary Ecology and Conservation Genomics Ulm University Ulm Germany
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43
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Caro T, Mallarino R. Coloration in Mammals. Trends Ecol Evol 2020; 35:357-366. [PMID: 31980234 PMCID: PMC10754262 DOI: 10.1016/j.tree.2019.12.008] [Citation(s) in RCA: 57] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2019] [Revised: 12/16/2019] [Accepted: 12/17/2019] [Indexed: 12/11/2022]
Abstract
Mammalian colors and color patterns are some of the most diverse and conspicuous traits found in nature and have been widely studied from genetic/developmental and evolutionary perspectives. In this review we first discuss the proximate causes underlying variation in pigment type (i.e., color) and pigment distribution (i.e., color pattern) and highlight both processes as having a distinct developmental basis. Then, using multiple examples, we discuss ultimate factors that have driven the evolution of coloration differences in mammals, which include background matching, intra- and interspecific signaling, and physiological influences. Throughout, we outline bridges between developmental and functional investigatory approaches that help broaden knowledge of mammals' memorable external appearances, and we point out areas for future interdisciplinary research.
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Affiliation(s)
- Tim Caro
- School of Biological Sciences, University of Bristol, 24 Tyndall Avenue, Bristol BS81TQ, UK; Center for Population Biology, 1 Shields Avenue, University of California, Davis, CA 95616, USA.
| | - Ricardo Mallarino
- Department of Molecular Biology, Princeton University, 119 Lewis Thomas Laboratory, Washington Road, Princeton, NJ 08544, USA
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44
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45
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Talas L, Fennell JG, Kjernsmo K, Cuthill IC, Scott‐Samuel NE, Baddeley RJ. CamoGAN: Evolving optimum camouflage with Generative Adversarial Networks. Methods Ecol Evol 2019. [DOI: 10.1111/2041-210x.13334] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Laszlo Talas
- School of Psychological Science University of Bristol Bristol UK
| | - John G. Fennell
- School of Psychological Science University of Bristol Bristol UK
| | - Karin Kjernsmo
- School of Biological Sciences University of Bristol Bristol UK
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46
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Abstract
Textbook trichromacy accounts for human color vision in terms of spectral sampling by three classes of cone photoreceptors. This account neglects entangling of color and pattern information created by wavelength-dependent optical blur (chromatic aberrations) and interleaved spatial sampling of the retinal image by the three classes of cones. Recent experimental, computational, and neurophysiological work is now considering color and pattern vision at the elementary scale of daylight vison, that is at the scale of individual cones. The results provide insight about rich interactions between color and pattern vision as well as the role of the statistical structure of natural scenes in shaping visual processing.
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Affiliation(s)
- David H Brainard
- Department of Psychology, University of Pennsylvania, Philadelphia, PA, 19104
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47
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Differential fitness effects of moonlight on plumage colour morphs in barn owls. Nat Ecol Evol 2019; 3:1331-1340. [PMID: 31477846 PMCID: PMC6728161 DOI: 10.1038/s41559-019-0967-2] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2018] [Accepted: 07/24/2019] [Indexed: 11/17/2022]
Abstract
The Moon cycle exposes nocturnal life to variation in environmental light. However, whether moonlight shapes the fitness of nocturnal species with distinct colour variants remains unknown. Combining long-term monitoring, high-resolution GPS tracking, and experiments on prey, we show that barn owls (Tyto alba) with distinct plumage colourations are differently affected by moonlight. The reddest owls are less successful hunting and providing food to their offspring during moonlit nights, which associates with lower body mass and survival of the youngest nestlings and with female mates starting to lay eggs at low moonlight levels. Although moonlight should make white owls more conspicuous to prey, hunting and fitness of the whitest owls are positively or un-affected by moonlight. We experimentally show that, under full-moon conditions, white plumages trigger longer freezing times in the prey, which should facilitate prey catchability. We propose that the barn owl’s white plumage, a rare trait among nocturnal predators, exploits the known aversion of rodents to bright light, explaining why, counterintuitively, moonlight impacts less the whitest owls. Our study provides evidence for the long-suspected influence of the Moon on the evolution of colouration in nocturnal species, highlighting the importance of colour in nocturnal ecosystems.
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48
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Neitz M, Patterson SS, Neitz J. Photopigment genes, cones, and color update: disrupting the splicing code causes a diverse array of vision disorders. Curr Opin Behav Sci 2019; 30:60-66. [PMID: 32195292 DOI: 10.1016/j.cobeha.2019.05.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
The human long- and middle-wavelength sensitive cone opsin genes exhibit an extraordinary degree of haplotype diversity that results from recombination mechanisms that have intermixed the genes. As a first step in expression, genes-including the protein coding exons and intervening introns-are transcribed. Next, transcripts are spliced to remove the introns and join the exons to generate a mature message that codes for the protein. Important information necessary for splicing is contained within exons, and is overlaid by the protein code. Intermixing the long- and middle-wavelength sensitive cone opsin genes has disrupted the splicing code, leading to exclusion of some exons from the mature message and is associated with several vision disorders including nearsightedness, cone dystrophy, and color vision deficiencies.
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Affiliation(s)
- Maureen Neitz
- University of Washington, Department of Ophthalmology, Vision Sciences Center, 750 Republican St, Box 358058, Seattle, WA 98109
| | - Sara S Patterson
- University of Washington, Graduate Program in Neuroscience, Vision Science Center, 750 Republican St, Box 358058, Seattle, WA 98109
| | - Jay Neitz
- University of Washington, Department of Ophthalmology, Vision Sciences Center, 750 Republican St, Box 358058, Seattle, WA 98109
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49
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Kallmyer NE, Shin HJ, Brem EA, Israelsen WJ, Reuel NF. Nesting box imager: Contact-free, real-time measurement of activity, surface body temperature, and respiratory rate applied to hibernating mouse models. PLoS Biol 2019; 17:e3000406. [PMID: 31339883 PMCID: PMC6682158 DOI: 10.1371/journal.pbio.3000406] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Revised: 08/05/2019] [Indexed: 01/21/2023] Open
Abstract
Noncontact methods to measure animal activity and physiology are necessary to monitor undisturbed states such as hibernation. Although some noncontact measurement systems are commercially available, they are often incompatible with realistic habitats, which feature freely moving animals in small, cluttered environments. A growing market of single-board computers, microcontrollers, and inexpensive sensors has made it possible to assemble bespoke integrated sensor systems at significantly lower price points. Herein, we describe a custom-built nesting box imager (NBI) that uses a single-board computer (Raspberry Pi) with a passive infrared (IR) motion sensor, silicon charge-coupled device (CCD), and IR camera CCD to monitor the activity, surface body temperature, and respiratory rate of the meadow jumping mouse during hibernation cycles. The data are logged up to 12 samples per minute and postprocessed using custom Matlab scripts. The entire unit can be built at a price point below US$400, which will be drastically reduced as IR (thermal) arrays are integrated into more consumer electronics and become less expensive.
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Affiliation(s)
| | - Han Jong Shin
- Iowa State University, Ames, Iowa, United States of America
| | - Ethan A. Brem
- University of Texas Southwestern Medical Center, Dallas, Texas, United States of America
| | - William J. Israelsen
- University of Texas Southwestern Medical Center, Dallas, Texas, United States of America
| | - Nigel F. Reuel
- Iowa State University, Ames, Iowa, United States of America
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50
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Kumpan LT, Rothman JM, Chapman CA, Teichroeb JA. Playing it safe? Solitary vervet monkeys (Chlorocebus pygerythrus) choose high-quality foods more than those in competition. Am J Primatol 2019; 81:e23002. [PMID: 31192490 DOI: 10.1002/ajp.23002] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Revised: 05/02/2019] [Accepted: 05/19/2019] [Indexed: 11/08/2022]
Abstract
An important goal in foraging ecology is to determine how biotic and abiotic variables impact the foraging decisions of wild animals and how they move throughout their multidimensional landscape. However, the interaction of food quality and feeding competition on foraging decisions is largely unknown. Here we examine the importance of food quality in a patch on the foraging decisions of wild vervet monkeys (Chlorocebus pygerythrus) at Lake Nabugabo, Uganda using a multidestination platform array. The overall nutritional composition of the vervet diet was assessed and found to be low in sodium and lipids, thus we conducted a series of experimental manipulations in which the array was varied in salt and oil content. Although vervets prioritized platforms containing key nutrients (i.e., sodium and lipids) overall, we found that solitary vervets prioritized nutrient-dense platforms more strongly than competing vervets. This finding was opposite to those in a similar experiment that manipulated food site quantity, suggesting that large, salient rewards may be worth competing over but slight differences in nutritional density may be only chosen when there are no potentially negative social consequences (i.e., aggression received). We also found that vervets chose platforms baited with oil-only, and oil combined with salt, but not salt-only, suggesting that energy was an important factor in food choice. Our findings demonstrate that when wild vervets detect differences in feeding patches that reflect nutritional composition, they factor these differences into their navigational and foraging decisions. In addition, our findings suggest that these nutritional differences may be considered alongside social variables, ultimately leading to the complex strategies we observed in this study.
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Affiliation(s)
- L Tamara Kumpan
- Department of Anthropology, University of Toronto Scarborough, Toronto, Ontario, Canada
| | - Jessica M Rothman
- Department of Anthropology, The New York Consortium in Evolutionary Primatology, Hunter College of the City University of New York, New York, New York
| | - Colin A Chapman
- Department of Anthropology, McGill University, Montreal, Quebec, Canada
| | - Julie A Teichroeb
- Department of Anthropology, University of Toronto Scarborough, Toronto, Ontario, Canada
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