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Majtan K, Klimentić M, Martinik J, Kulisova M, Jarosova I, Potocar T, Branyik T. Surface properties of mycoparasitic Pythium species and their interaction with model materials. Heliyon 2024; 10:e31800. [PMID: 38867954 PMCID: PMC11167301 DOI: 10.1016/j.heliyon.2024.e31800] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Revised: 04/30/2024] [Accepted: 05/22/2024] [Indexed: 06/14/2024] Open
Abstract
Pythium oligandrum, a soil-born oomycete, is an effective biological control agent exhibiting antagonistic and parasitic activity against pathogenic fungi. This study is the first attempt to characterize its surface properties and to apply models of physicochemical interactions (thermodynamic, DLVO and XDLVO) to quantify its adhesion properties to a model material, represented by magnetic beads (MB). The predictions of interaction models were based on experimental data (contact angles, zeta potentials, size). Adhesion intensities (AI) were determined experimentally taking advantage of MB with different surface properties. The role of weak physicochemical interactions was estimated by comparing experimental AI with model predictions. The results revealed that the surface properties of the three Pythium spp. studied were very similar and fell within the range for hydrophilic microorganisms (ΔGTOT > 0) with a predominantly negative surface charge. The most reliable description of AI was obtained using the DLVO model, including Lifshitz-van der Waals and electrostatic interactions. The highest AI between Pythium spp. and all three MB was observed at pH 3, which was supported by the DLVO prediction. The greater agreement between the sphere-sphere geometric version of the DLVO model and experiment suggests that the surface protrusions of the oospores increase the efficiency of adhesion. The surface properties of the pathogenic fungi, characterized in this work, fell within the range defined by MB and therefore it can be expected that their physicochemical interactions with Pythium spp. will also be favourable.
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Affiliation(s)
- Katarina Majtan
- Research Institute of Brewing and Malting, Lípová 15, 120 44, Prague, Czech Republic
- Department of Biotechnology, University of Chemistry and Technology Prague, Technická 5, Czech Republic
| | - Maja Klimentić
- Department of Biotechnology, University of Chemistry and Technology Prague, Technická 5, Czech Republic
| | - Jan Martinik
- Research Institute of Brewing and Malting, Lípová 15, 120 44, Prague, Czech Republic
| | - Marketa Kulisova
- Department of Biotechnology, University of Chemistry and Technology Prague, Technická 5, Czech Republic
| | - Irena Jarosova
- Department of Biotechnology, University of Chemistry and Technology Prague, Technická 5, Czech Republic
| | - Tomas Potocar
- Department of Biotechnology, University of Chemistry and Technology Prague, Technická 5, Czech Republic
| | - Tomas Branyik
- Research Institute of Brewing and Malting, Lípová 15, 120 44, Prague, Czech Republic
- Department of Biotechnology, University of Chemistry and Technology Prague, Technická 5, Czech Republic
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Xue Y, Li W, Li M, Ru N, Chen S, Jiu M, Feng H, Wei L, Daly P, Zhou D. Biological Control of a Root-Knot Nematode Meloidogyne incognita Infection of Tomato ( Solanum lycopersicum L.) by the Oomycete Biocontrol Agent Pythium oligandrum. J Fungi (Basel) 2024; 10:265. [PMID: 38667936 PMCID: PMC11051105 DOI: 10.3390/jof10040265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 03/13/2024] [Accepted: 03/15/2024] [Indexed: 04/28/2024] Open
Abstract
The biocontrol agent Pythium oligandrum, which is a member of the phylum Oomycota, can control diseases caused by a taxonomically wide range of plant pathogens, including fungi, bacteria, and oomycetes. However, whether P. oligandrum could control diseases caused by plant root-knot nematodes (RKNs) was unknown. We investigated a recently isolated P. oligandrum strain GAQ1, and the P. oligandrum strain CBS530.74, for the control of an RKN Meloidogyne incognita infection of tomato (Solanum lycopersicum L.). Initially, P. oligandrum culture filtrates were found to be lethal to M. incognita second-stage juveniles (J2s) with up to 84% mortality 24 h after treatment compared to 14% in the control group. Consistent with the lethality to M. incognita J2s, tomato roots treated with P. oligandrum culture filtrates reduced their attraction of nematodes, and the number of nematodes penetrating the roots was reduced by up to 78%. In a greenhouse pot trial, the P. oligandrum GAQ1 inoculation of tomato plants significantly reduced the gall number by 58% in plants infected with M. incognita. Notably, the P. oligandrum GAQ1 mycelial treatment significantly increased tomato plant height (by 36%), weight (by 27%), and root weight (by 48%). A transcriptome analysis of tomato seedling roots inoculated with the P. oligandrum GAQ1 strain identified ~2500 differentially expressed genes. The enriched GO terms and annotations in the up-regulated genes suggested a modulation of the plant hormone-signaling and defense-related pathways in response to P. oligandrum. In conclusion, our results support that P. oligandrum GAQ1 can serve as a potential biocontrol agent for M. incognita control in tomato. Multiple mechanisms appear to contribute to the biocontrol effect, including the direct inhibition of M. incognita, the potential priming of tomato plant defenses, and plant growth promotion.
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Affiliation(s)
- Yuwei Xue
- College of Food and Bioengineering, Henan University of Science and Technology, Luoyang 471023, China; (Y.X.); (W.L.)
- Key Lab of Food Quality and Safety of Jiangsu Province—State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; (M.L.); (N.R.); (S.C.); (H.F.); (L.W.)
| | - Weishan Li
- College of Food and Bioengineering, Henan University of Science and Technology, Luoyang 471023, China; (Y.X.); (W.L.)
- Key Lab of Food Quality and Safety of Jiangsu Province—State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; (M.L.); (N.R.); (S.C.); (H.F.); (L.W.)
- Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Mengnan Li
- Key Lab of Food Quality and Safety of Jiangsu Province—State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; (M.L.); (N.R.); (S.C.); (H.F.); (L.W.)
- College of Landscape and Ecological Engineering, Hebei University of Engineering, Handan 471023, China
| | - Ningchen Ru
- Key Lab of Food Quality and Safety of Jiangsu Province—State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; (M.L.); (N.R.); (S.C.); (H.F.); (L.W.)
- School of Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Siqiao Chen
- Key Lab of Food Quality and Safety of Jiangsu Province—State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; (M.L.); (N.R.); (S.C.); (H.F.); (L.W.)
- Fungal Genomics Laboratory (FungiG), Nanjing Agricultural University, Nanjing 210095, China
| | - Min Jiu
- College of Food and Bioengineering, Henan University of Science and Technology, Luoyang 471023, China; (Y.X.); (W.L.)
| | - Hui Feng
- Key Lab of Food Quality and Safety of Jiangsu Province—State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; (M.L.); (N.R.); (S.C.); (H.F.); (L.W.)
| | - Lihui Wei
- Key Lab of Food Quality and Safety of Jiangsu Province—State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; (M.L.); (N.R.); (S.C.); (H.F.); (L.W.)
- School of Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Paul Daly
- Key Lab of Food Quality and Safety of Jiangsu Province—State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; (M.L.); (N.R.); (S.C.); (H.F.); (L.W.)
| | - Dongmei Zhou
- Key Lab of Food Quality and Safety of Jiangsu Province—State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; (M.L.); (N.R.); (S.C.); (H.F.); (L.W.)
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3
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Wang W, Long Y. A review of biocontrol agents in controlling late blight of potatoes and tomatoes caused by Phytophthora infestans and the underlying mechanisms. PEST MANAGEMENT SCIENCE 2023; 79:4715-4725. [PMID: 37555293 DOI: 10.1002/ps.7706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Revised: 07/25/2023] [Accepted: 08/09/2023] [Indexed: 08/10/2023]
Abstract
Phytophthora infestans causes late blight on potatoes and tomatoes, which has a significant economic impact on agriculture. The management of late blight has been largely dependent on the application of synthetic fungicides, which is not an ultimate solution for sustainable agriculture and environmental safety. Biocontrol strategies are expected to be alternative methods to the conventional chemicals in controlling plant diseases in the integrated pest management (IPM) programs. Well-studied biocontrol agents against Phytophthora infestans include fungi, oomycetes, bacteria, and compounds produced by these antagonists, in addition to certain bioactive metabolites produced by plants. Laboratory and glasshouse experiments suggest a potential for using biocontrol in practical late blight disease management. However, the transition of biocontrol to field applications is problematic for the moment, due to low and variable efficacies. In this review, we provide a comprehensive summary on these biocontrol strategies and the underlying corresponding mechanisms. To give a more intuitive understanding of the promising biocontrol agents against Phytophthora infestans in agricultural systems, we discuss the utilizations, modes of action and future potentials of these antagonists based on their taxonomic classifications. To achieve a goal of best possible results produced by biocontrol agents, it is suggested to work on field trials, strain modifications, formulations, regulations, and optimizations of application. Combined biocontrol agents having different modes of action or biological adaptation traits may be used to strengthen the biocontrol efficacy. More importantly, biological control agents should be applied in the coordination of other existing and forthcoming methods in the IPM programs. © 2023 Society of Chemical Industry.
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Affiliation(s)
- Weizhen Wang
- Institute of Crop Protection, College of Agriculture, Guizhou University, Guiyang, China
| | - Youhua Long
- Institute of Crop Protection, College of Agriculture, Guizhou University, Guiyang, China
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Hashemi M, Amiel A, Zouaoui M, Adam K, Clemente HS, Aguilar M, Pendaries R, Couzigou JM, Marti G, Gaulin E, Roy S, Rey T, Dumas B. The mycoparasite Pythium oligandrum induces legume pathogen resistance and shapes rhizosphere microbiota without impacting mutualistic interactions. FRONTIERS IN PLANT SCIENCE 2023; 14:1156733. [PMID: 37929182 PMCID: PMC10625430 DOI: 10.3389/fpls.2023.1156733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 10/02/2023] [Indexed: 11/07/2023]
Abstract
Pythium oligandrum is a soil-borne oomycete associated with rhizosphere and root tissues. Its ability to enhance plant growth, stimulate plant immunity and parasitize fungal and oomycete preys has led to the development of agricultural biocontrol products. Meanwhile, the effect of P. oligandrum on mutualistic interactions and more generally on root microbial communities has not been investigated. Here, we developed a biological system comprising P. oligandrum interacting with two legume plants, Medicago truncatula and Pisum sativum. P. oligandrum activity was investigated at the transcriptomics level through an RNAseq approach, metabolomics and finally metagenomics to investigate the impact of P. oligandrum on root microbiota. We found that P. oligandrum promotes plant growth in these two species and protects them against infection by the oomycete Aphanomyces euteiches, a devastating legume root pathogen. In addition, P. oligandrum up-regulated more than 1000 genes in M. truncatula roots including genes involved in plant defense and notably in the biosynthesis of antimicrobial compounds and validated the enhanced production of M. truncatula phytoalexins, medicarpin and formononetin. Despite this activation of plant immunity, we found that root colonization by P. oligandrum did not impaired symbiotic interactions, promoting the formation of large and multilobed symbiotic nodules with Ensifer meliloti and did not negatively affect the formation of arbuscular mycorrhizal symbiosis. Finally, metagenomic analyses showed the oomycete modifies the composition of fungal and bacterial communities. Together, our results provide novel insights regarding the involvement of P. oligandrum in the functioning of plant root microbiota.
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Affiliation(s)
- Maryam Hashemi
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, Centre National de la Recherche Scientifique (CNRS), Université Toulouse III, Toulouse Institut National Polytechnique (INP), Auzeville-Tolosane, France
| | - Aurélien Amiel
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, Centre National de la Recherche Scientifique (CNRS), Université Toulouse III, Toulouse Institut National Polytechnique (INP), Auzeville-Tolosane, France
- DE SANGOSSE, Pont-Du-Casse, France
| | - Mohamed Zouaoui
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, Centre National de la Recherche Scientifique (CNRS), Université Toulouse III, Toulouse Institut National Polytechnique (INP), Auzeville-Tolosane, France
| | - Kévin Adam
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, Centre National de la Recherche Scientifique (CNRS), Université Toulouse III, Toulouse Institut National Polytechnique (INP), Auzeville-Tolosane, France
| | - Hélène San Clemente
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, Centre National de la Recherche Scientifique (CNRS), Université Toulouse III, Toulouse Institut National Polytechnique (INP), Auzeville-Tolosane, France
| | - Marielle Aguilar
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, Centre National de la Recherche Scientifique (CNRS), Université Toulouse III, Toulouse Institut National Polytechnique (INP), Auzeville-Tolosane, France
| | - Rémi Pendaries
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, Centre National de la Recherche Scientifique (CNRS), Université Toulouse III, Toulouse Institut National Polytechnique (INP), Auzeville-Tolosane, France
- DE SANGOSSE, Pont-Du-Casse, France
| | - Jean-Malo Couzigou
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, Centre National de la Recherche Scientifique (CNRS), Université Toulouse III, Toulouse Institut National Polytechnique (INP), Auzeville-Tolosane, France
| | - Guillaume Marti
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, Centre National de la Recherche Scientifique (CNRS), Université Toulouse III, Toulouse Institut National Polytechnique (INP), Auzeville-Tolosane, France
- Metatoul-AgromiX Platform, MetaboHUB, National Infrastructure of Metabolomics and Fluxomics, Toulouse, France
| | - Elodie Gaulin
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, Centre National de la Recherche Scientifique (CNRS), Université Toulouse III, Toulouse Institut National Polytechnique (INP), Auzeville-Tolosane, France
| | - Sébastien Roy
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, Centre National de la Recherche Scientifique (CNRS), Université Toulouse III, Toulouse Institut National Polytechnique (INP), Auzeville-Tolosane, France
- AGRONUTRITION, Carbonne, France
| | - Thomas Rey
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, Centre National de la Recherche Scientifique (CNRS), Université Toulouse III, Toulouse Institut National Polytechnique (INP), Auzeville-Tolosane, France
- DE SANGOSSE, Pont-Du-Casse, France
| | - Bernard Dumas
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, Centre National de la Recherche Scientifique (CNRS), Université Toulouse III, Toulouse Institut National Polytechnique (INP), Auzeville-Tolosane, France
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Mesguida O, Haidar R, Yacoub A, Dreux-Zigha A, Berthon JY, Guyoneaud R, Attard E, Rey P. Microbial Biological Control of Fungi Associated with Grapevine Trunk Diseases: A Review of Strain Diversity, Modes of Action, and Advantages and Limits of Current Strategies. J Fungi (Basel) 2023; 9:638. [PMID: 37367574 DOI: 10.3390/jof9060638] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Revised: 05/23/2023] [Accepted: 05/25/2023] [Indexed: 06/28/2023] Open
Abstract
Grapevine trunk diseases (GTDs) are currently among the most important health challenges for viticulture in the world. Esca, Botryosphaeria dieback, and Eutypa dieback are the most current GTDs caused by fungi in mature vineyards. Their incidence has increased over the last two decades, mainly after the ban of sodium arsenate, carbendazim, and benomyl in the early 2000s. Since then, considerable efforts have been made to find alternative approaches to manage these diseases and limit their propagation. Biocontrol is a sustainable approach to fight against GTD-associated fungi and several microbiological control agents have been tested against at least one of the pathogens involved in these diseases. In this review, we provide an overview of the pathogens responsible, the various potential biocontrol microorganisms selected and used, and their origins, mechanisms of action, and efficiency in various experiments carried out in vitro, in greenhouses, and/or in vineyards. Lastly, we discuss the advantages and limitations of these approaches to protect grapevines against GTDs, as well as the future perspectives for their improvement.
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Affiliation(s)
- Ouiza Mesguida
- E2S UPPA, CNRS, IPREM, Universite de Pau et des Pays de l'Adour, 64000 Pau, France
- GreenCell: Biopôle Clermont-Limagne, 63360 Saint Beauzire, France
| | - Rana Haidar
- E2S UPPA, CNRS, IPREM, Universite de Pau et des Pays de l'Adour, 64000 Pau, France
| | - Amira Yacoub
- E2S UPPA, CNRS, IPREM, Universite de Pau et des Pays de l'Adour, 64000 Pau, France
| | | | | | - Rémy Guyoneaud
- E2S UPPA, CNRS, IPREM, Universite de Pau et des Pays de l'Adour, 64000 Pau, France
| | - Eléonore Attard
- E2S UPPA, CNRS, IPREM, Universite de Pau et des Pays de l'Adour, 64000 Pau, France
| | - Patrice Rey
- E2S UPPA, CNRS, IPREM, Universite de Pau et des Pays de l'Adour, 64000 Pau, France
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Yacoub A, Haidar R, Mesguida O, Gerbore J, Hachicha M, Attard E, Guyoneaud R, Rey P. Deciphering Plant-Induced Responses toward Botrytis cinerea and Plasmopara viticola Attacks in Two Grapevine Cultivars Colonized by the Root Biocontrol Oomycete, Pythium oligandrum. J Fungi (Basel) 2023; 9:jof9050511. [PMID: 37233222 DOI: 10.3390/jof9050511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Revised: 04/11/2023] [Accepted: 04/20/2023] [Indexed: 05/27/2023] Open
Abstract
Two major diseases that affect grapevine leaves and berries are controlled by the oomycete Pythium oligandrum. As the efficacy of biocontrol agents strongly depends on factors such as the trophic behaviors of pathogens and cultivar susceptibility, a two-disease approach was implemented to evaluate the activity of P. oligandrum against Botrytis cinerea (the necrotrophic fungus of gray mold) and Plasmopara viticola (the biotrophic oomycete of downy mildew) on two grapevine cultivars with different susceptibilities to these two pathogens. The results show that grapevine root inoculation with P. oligandrum significantly reduced P. viticola and B. cinerea infection on the leaves of the two cultivars, but with differences. This was observed when the relative expression of 10 genes was measured in response to each pathogen, and could be attributed to their lifestyles, i.e., biotrophic or necrotrophic, which are related to the activation of specific metabolic pathways of the plant. In response to P. viticola infection, genes from the jasmonate and ethylene pathways were mainly induced, whereas for B. cinerea, the genes induced were those of the ethylene-jasmonate pathway. The different levels of defense against B. cinerea and P. viticola could also explain the difference in cultivar susceptibility to these pathogens.
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Affiliation(s)
- Amira Yacoub
- E2S UPPA, CNRS, IPREM, Université de Pau et des Pays de l'Adour, 64000 Pau, France
- INRAE, UMR1065, Santé et Agroécologie du Vignoble (SAVE), ISVV, 33883 Villenave d'Ornon, France
| | - Rana Haidar
- E2S UPPA, CNRS, IPREM, Université de Pau et des Pays de l'Adour, 64000 Pau, France
- INRAE, UMR1065, Santé et Agroécologie du Vignoble (SAVE), ISVV, 33883 Villenave d'Ornon, France
| | - Ouiza Mesguida
- E2S UPPA, CNRS, IPREM, Université de Pau et des Pays de l'Adour, 64000 Pau, France
- GreenCell, Biopôle Clermont-Limagne, 63360 Saint Beauzire, France
| | - Jonathan Gerbore
- GreenCell, Biopôle Clermont-Limagne, 63360 Saint Beauzire, France
| | - Maya Hachicha
- INRAE, UMR1065, Santé et Agroécologie du Vignoble (SAVE), ISVV, 33883 Villenave d'Ornon, France
| | - Eléonore Attard
- E2S UPPA, CNRS, IPREM, Université de Pau et des Pays de l'Adour, 64000 Pau, France
| | - Rémy Guyoneaud
- E2S UPPA, CNRS, IPREM, Université de Pau et des Pays de l'Adour, 64000 Pau, France
| | - Patrice Rey
- E2S UPPA, CNRS, IPREM, Université de Pau et des Pays de l'Adour, 64000 Pau, France
- INRAE, UMR1065, Santé et Agroécologie du Vignoble (SAVE), ISVV, 33883 Villenave d'Ornon, France
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Volatile Organic Compounds from Pythium oligandrum Play a Role in Its Parasitism on Plant-Pathogenic Pythium myriotylum. Appl Environ Microbiol 2023; 89:e0203622. [PMID: 36744963 PMCID: PMC9973004 DOI: 10.1128/aem.02036-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
The oomycete Pythium oligandrum is a soil-inhabiting parasite and predator of both fungi and oomycetes, and uses hydrolytic enzymes extensively to penetrate and hydrolyze its host or prey. Other mechanisms have been studied less, and we investigated the contribution of P. oligandrum-produced volatile organic compounds (VOCs) to parasitism. The growth-inhibiting activity of P. oligandrum VOCs was tested on Pythium myriotylum-a host or prey of P. oligandrum-coupled with electron microscopy, and biochemical and transcriptomic analyses. The P. oligandrum-produced VOCs reduced P. myriotylum growth by 80% and zoospore levels by 60%. Gas chromatography-mass spectrometry (GC-MS) identified 23 VOCs, and methyl heptenone, d-limonene, 2-undecanone, and 1-octanal were potent inhibitors of P. myriotylum growth and led to increased production of reactive oxygen species at a concentration that did not inhibit P. oligandrum growth. Exposure to the P. oligandrum VOCs led to shrinkage of P. myriotylum hyphae and lysis of the cellular membranes and organelles. Transcriptomics of P. myriotylum exposed to the P. oligandrum VOCs at increasing levels of growth inhibition initially showed a strong upregulation of putative detoxification-related genes that was not maintained later. The inhibition of P. myriotylum growth continued immediately after the exposure to the VOCs was discontinued and led to the reduced infection of its plant hosts. The VOCs produced by P. oligandrum could be another factor alongside hydrolytic enzymes contributing to its ecological role as a microbial parasite in particular ecological niches such as in soil, and may also contribute to the biocontrol of diseases using P. oligandrum commercial preparations. IMPORTANCE Microbe-microbe interactions in nature are multifaceted, with multiple mechanisms of action, and are crucial to how plants interact with microbes. Volatile organic compounds (VOCs) have diverse functions, including contributing to parasitism in ecological interactions and potential applications in biocontrol. The microbial parasite P. oligandrum is well known for using hydrolytic enzymes as part of its parasitism. We found that P. oligandrum VOCs reduced the growth of, and caused major damage to, the hyphae of P. myriotylum (a host or prey of P. oligandrum). Transcriptomic analyses of P. myriotylum exposed to the VOCs revealed the upregulation of genes potentially involved in an attempt to detoxify the VOCs. The inhibitory effects of the VOCs had a knock-on effect by reducing the virulence of P. myriotylum toward its plant hosts. The P. oligandrum VOCs could contribute to its ecological role as a microbial parasite. The VOCs analyzed here may also contribute to the biocontrol of diseases using P. oligandrum commercial preparations.
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Yang K, Wang Y, Li J, Du Y, Zhai Y, Liang D, Shen D, Ji R, Ren X, Peng H, Jing M, Dou D. The Pythium periplocum elicitin PpEli2 confers broad-spectrum disease resistance by triggering a novel receptor-dependent immune pathway in plants. HORTICULTURE RESEARCH 2023; 10:uhac255. [PMID: 37533673 PMCID: PMC10390855 DOI: 10.1093/hr/uhac255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Accepted: 11/14/2022] [Indexed: 08/04/2023]
Abstract
Elicitins are microbe-associated molecular patterns produced by oomycetes to elicit plant defense. It is still unclear whether elicitins derived from non-pathogenic oomycetes can be used as bioactive molecules for disease control. Here, for the first time we identify and characterize an elicitin named PpEli2 from the soil-borne oomycete Pythium periplocum, which is a non-pathogenic mycoparasite colonizing the root ecosystem of diverse plant species. Perceived by a novel cell surface receptor-like protein, REli, that is conserved in various plants (e.g. tomato, pepper, soybean), PpEli2 can induce hypersensitive response cell death and an immunity response in Nicotiana benthamiana. Meanwhile, PpEli2 enhances the interaction between REli and its co-receptor BAK1. The receptor-dependent immune response triggered by PpEli2 is able to protect various plant species against Phytophthora and fungal infections. Collectively, our work reveals the potential agricultural application of non-pathogenic elicitins and their receptors in conferring broad-spectrum resistance for plant protection.
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Affiliation(s)
- Kun Yang
- Key Laboratory of Biological Interaction and Crop Health, Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China
| | - Yi Wang
- Key Laboratory of Biological Interaction and Crop Health, Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China
| | - Jialu Li
- Key Laboratory of Biological Interaction and Crop Health, Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China
| | - Yaxin Du
- Key Laboratory of Biological Interaction and Crop Health, Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China
| | - Ying Zhai
- Department of Plant Pathology, Washington State University, Pullman, WA 99164, USA
| | - Dong Liang
- Key Laboratory of Biological Interaction and Crop Health, Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China
| | - Danyu Shen
- Key Laboratory of Biological Interaction and Crop Health, Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China
| | - Rui Ji
- Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China
| | - Xuexiang Ren
- Institute of Plant Protection and Agro-Products Safety, Anhui Academy of Agricultural Sciences, Hefei 230001, China
| | - Hao Peng
- Department of Plant Pathology, Washington State University, Pullman, WA 99164, USA
| | | | - Daolong Dou
- Key Laboratory of Biological Interaction and Crop Health, Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China
- Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing 210095, China
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Geetha N, Sunilkumar CR, Bhavya G, Nandini B, Abhijith P, Satapute P, Shetty HS, Govarthanan M, Jogaiah S. Warhorses in soil bioremediation: Seed biopriming with PGPF secretome to phytostimulate crop health under heavy metal stress. ENVIRONMENTAL RESEARCH 2023; 216:114498. [PMID: 36209791 DOI: 10.1016/j.envres.2022.114498] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Revised: 08/12/2022] [Accepted: 10/02/2022] [Indexed: 06/16/2023]
Abstract
The fungal symbiosis with the plant root system is importantly recognized as a plant growth promoting fungi (PGPFs), as well as elicitor of plant defence against different biotic and abiotic stress conditions. Thus PGPFs are playing as a key trouper in enhancing agricultural quality and increased crop production and paving a way towards a sustainable agriculture. Due to increased demand of food production, the over and unscientific usage of chemical fertilizers has led to the contamination of soil by organic and inorganic wastes impacting on soil quality, crops quality effecting on export business of agricultural products. The application of microbial based consortium like plant growth promoting fungi is gaining worldwide importance due to their multidimensional activity. These activities are through plant growth promotion, induction of systemic resistance, disease combating and detoxification of organic and inorganic toxic chemicals, a heavy metal tolerance ability. The master key behind these properties exhibited by PGPFs are attributed towards various secretory biomolecules (secondary metabolites or enzymes or metabolites) secreted by the fungi during interaction mechanism. The present review is focused on the multidimensional role PGPFs as elicitors of Induced systemic resistance against phytopathogens as well as heavy metal detoxifier through seed biopriming and biofortification methods. The in-sights on PGPFs and their probable mechanistic nature contributing towards plants to withstand heavy metal stress and stress alleviation by activating of various stress regulatory pathways leading to secretion of low molecular weight compounds like organic compounds, glomalin, hydrophobins, etc,. Thus projecting the importance of PGPFs and further requirement of research in developing PGPFs based molecules and combining with trending Nano technological approaches for enhanced heavy metal stress alleviations in plant and soil as well as establishing a sustainable agriculture.
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Affiliation(s)
- Nagaraja Geetha
- Nanobiotechnology Laboratory, DOS in Biotechnology, University of Mysore, Manasagangotri, Mysuru, 570006, Karnataka, India
| | | | - Gurulingaiah Bhavya
- Nanobiotechnology Laboratory, DOS in Biotechnology, University of Mysore, Manasagangotri, Mysuru, 570006, Karnataka, India
| | - Boregowda Nandini
- Nanobiotechnology Laboratory, DOS in Biotechnology, University of Mysore, Manasagangotri, Mysuru, 570006, Karnataka, India
| | - Padukana Abhijith
- Nanobiotechnology Laboratory, DOS in Biotechnology, University of Mysore, Manasagangotri, Mysuru, 570006, Karnataka, India
| | - Praveen Satapute
- Laboratory of Plant Healthcare and Diagnostics, Department of Biotechnology and Microbiology, Karnatak University, Dharwad, 580 003, Karnataka, India
| | - Hunthrike Shekar Shetty
- Nanobiotechnology Laboratory, DOS in Biotechnology, University of Mysore, Manasagangotri, Mysuru, 570006, Karnataka, India
| | - Muthusamy Govarthanan
- Department of Environmental Engineering, Kyungpook National University, 80 Daehak-ro, Buk-gu, Daegu, 41566, South Korea; Department of Biomaterials, Saveetha Dental College and Hospital, Saveetha Institute of Medical and Technical Sciences, Chennai, 600 077, India.
| | - Sudisha Jogaiah
- Laboratory of Plant Healthcare and Diagnostics, Department of Biotechnology and Microbiology, Karnatak University, Dharwad, 580 003, Karnataka, India; Department of Environmental Science, Central University of Kerala, Tejaswini Hills, Periye (PO) - 671316, Kasaragod (DT), Kerala, India.
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10
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Yang K, Wang Y, Zhao H, Shen D, Dou D, Jing M. Novel EIicitin from Pythium oligandrum Confers Disease Resistance against Phytophthora capsici in Solanaceae Plants. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2022; 70:16135-16145. [PMID: 36528808 DOI: 10.1021/acs.jafc.2c06431] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
The mycoparasite Pythium oligandrum is a nonpathogenic oomycete that can boost plant immune responses. Elicitins are microbe-associated molecular patterns (MAMPs) specifically produced by oomycetes that activate plant defense. Here, we identified a novel elicitin, PoEli8, from P. oligandrum that exhibits immunity-inducing activity in plants. In vitro-purified PoEli8 induced strong innate immune responses and enhanced resistance to the oomycete pathogen Phytophthora capsici in Solanaceae plants, including Nicotiana benthamiana, tomato, and pepper. Cell death and reactive oxygen species (ROS) accumulation triggered by the PoEli8 protein were dependent on the plant coreceptors receptor-like kinases (RLKs) BAK1 and SOBIR1. Furthermore, REli from N. benthamiana, a cell surface receptor-like protein (RLP) was implicated in the perception of PoEli8 in N. benthamiana. These results indicate the potential value of PoEli8 as a bioactive formula to protect Solanaceae plants against Phytophthora.
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Affiliation(s)
- Kun Yang
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China
| | - Yi Wang
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China
| | - Hanqing Zhao
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China
| | - Danyu Shen
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China
| | - Daolong Dou
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China
| | - Maofeng Jing
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China
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11
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Pisarčik M, Hakl J, Szabó O, Nerušil P. Efficacy of Pythium oligandrum on improvement of lucerne yield, root development and disease score under field conditions. FRONTIERS IN PLANT SCIENCE 2022; 13:1045225. [PMID: 36570933 PMCID: PMC9774032 DOI: 10.3389/fpls.2022.1045225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Accepted: 11/21/2022] [Indexed: 06/17/2023]
Abstract
INTRODUCTION Biological control of root diseases of lucerne (Medicago sativa L.) has potential benefits for stand performance but this remains unsupported by evidence from practical field studies. METHODS In field experiments at three sites our objectives were to determine the effect of Pythium oligandrum, as spring, autumn and intensive regime treatments on (i) lucerne plant density and root traits development, and (ii) forage yield and forage traits. Lucerne stands were managed under two or three treatments: non-treated control and P. oligandrum applied at two intensities of application under four-cut utilization. RESULTS AND DISCUSSION Under relatively dry conditions (annual mean 10°C and <500 mm precipitation) lucerne dry matter yield was significantly reduced by 6%, which could be related to mechanisms of inappropriate stimulation and disturbance of the balance between auxins and ethylene. Under annual precipitation of >500 mm, positive impacts on stand height or fine root mass were observed for the autumn and intensive treatments where positive root response was visible only in alluvial soil. However, these changes did not result in higher yield and probably more applications per year will be needed for significant forage yield improvement. This study highlights the limits of field-scale biological control in which the potential of P. oligandrum for lucerne productivity improvement was realised only under a humid environment or deep alluvial soils, where higher root disease infestation may also be expected.
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Affiliation(s)
- Martin Pisarčik
- Department of Agroecology and Crop Production, Czech University of Life Sciences Prague, Prague, Czechia
| | - Josef Hakl
- Department of Agroecology and Crop Production, Czech University of Life Sciences Prague, Prague, Czechia
| | - Ondřej Szabó
- Department of Agroecology and Crop Production, Czech University of Life Sciences Prague, Prague, Czechia
| | - Pavel Nerušil
- Research Station of Grassland Ecosystems Jevíčko, Crop Research Institute, Jevíčko, Czechia
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12
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Cheng Y, Zhang H, Zhu W, Li Q, Meng R, Yang K, Guo Z, Zhai Y, Zhang H, Ji R, Peng H, Dou D, Jing M. Ferroptosis induced by the biocontrol agent Pythium oligandrum enhances soybean resistance to Phytophthora sojae. Environ Microbiol 2022; 24:6267-6278. [PMID: 36250814 DOI: 10.1111/1462-2920.16248] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2022] [Accepted: 10/13/2022] [Indexed: 01/12/2023]
Abstract
Ferroptosis is a newly discovered form of cell death accompanied by iron accumulation and lipid peroxidation. Both biotic and abiotic stresses can induce ferroptosis in plant cells. In the case of plant interactions with pathogenic Phytophthora oomycetes, the roles of ferroptosis are still largely unknown. Here, we performed transcriptome analysis on soybean plants treated with the biocontrol agent Pythium oligandrum, a soilborne and non-pathogenic oomycete capable of inducing plant resistance against Phytophthora sojae infection. Expression of homologous soybean genes involved in ferroptosis and resistance was reprogrammed upon P. oligandrum treatment. Typical hallmarks for characterizing ferroptosis were detected in soybean hypocotyl cells, including decreased glutathione (GSH) level, accumulation of ferric ions, and lipid peroxidation by reactive oxygen species (ROS). Meanwhile, ferroptosis-like cell death was triggered by P. oligandrum to suppress P. sojae infection in soybean. Protection provided by P. oligandrum could be attenuated by the ferroptosis inhibitor ferrostatin-1 (Fer-1), suggesting the critical role of ferroptosis in soybean resistance against P. sojae. Taken together, these results demonstrate that ferroptosis is a P. oligandrum-inducible defence mechanism against oomycete infection in soybean.
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Affiliation(s)
- Yang Cheng
- Key Laboratory of Biological Interaction and Crop Health, Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China
| | - Huanxin Zhang
- Key Laboratory of Biological Interaction and Crop Health, Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China
| | - Wenyi Zhu
- Key Laboratory of Biological Interaction and Crop Health, Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China
| | - Qing Li
- Key Laboratory of Biological Interaction and Crop Health, Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China
| | - Rui Meng
- Key Laboratory of Biological Interaction and Crop Health, Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China
| | - Kun Yang
- Key Laboratory of Biological Interaction and Crop Health, Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China
| | - Ziqian Guo
- Key Laboratory of Biological Interaction and Crop Health, Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China
| | - Ying Zhai
- Department of Plant Pathology, Washington State University, Pullman, Washington, USA
| | - Haijing Zhang
- Rongcheng Agricultural and Rural Services Centre, Weihai, China
| | - Rui Ji
- Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Jiangsu Key Laboratory for Food and Safety-State Key Laboratory Cultivation Base of Ministry of Science and Technology, Nanjing, China
| | - Hao Peng
- Department of Plant Pathology, Washington State University, Pullman, Washington, USA
| | - Daolong Dou
- Key Laboratory of Biological Interaction and Crop Health, Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China
| | - Maofeng Jing
- Key Laboratory of Biological Interaction and Crop Health, Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China
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13
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Bělonožníková K, Hýsková V, Vašková M, Křížek T, Čokrtová K, Vaněk T, Halířová L, Chudý M, Žufić A, Ryšlavá H. Seed Protection of Solanum lycopersicum with Pythium oligandrum against Alternaria brassicicola and Verticillium albo-atrum. Microorganisms 2022; 10:microorganisms10071348. [PMID: 35889067 PMCID: PMC9315653 DOI: 10.3390/microorganisms10071348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 06/30/2022] [Accepted: 07/01/2022] [Indexed: 12/10/2022] Open
Abstract
Pythium oligandrum, strain M1, is a soil oomycete successfully used as a biological control agent (BCA), protecting plants against fungal, yeast, and oomycete pathogens through mycoparasitism and elicitor-dependent plant priming. The not yet described Pythium strains, X42 and 00X48, have shown potential as BCAs given the high activity of their secreted proteases, endoglycosidases, and tryptamine. Here, Solanum lycopersicum L. cv. Micro-Tom seeds were coated with Pythium strains, and seedlings were exposed to fungal pathogens, either Alternaria brassicicola or Verticillium albo-atrum. The effects of both infection and seed-coating on plant metabolism were assessed by determining the activity and isoforms of antioxidant enzymes and endoglycosidases and the content of tryptamine, amino acids, and heat shock proteins. Dual culture competition testing and microscopy analysis confirmed mycoparasitism in all three Pythium strains. In turn, seed treatment significantly increased the total free amino acid content, changing their abundance in both non-infected and infected plants. In response to pathogens, plant Hsp70 and Hsp90 isoform levels also varied among Pythium strains, most likely as a strategy for priming the plant against infection. Overall, our results show in vitro mycoparasitism between Pythium strains and fungal pathogens and in planta involvement of heat shock proteins in priming.
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Affiliation(s)
- Kateřina Bělonožníková
- Department of Biochemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic; (K.B.); (V.H.); (M.V.); (T.K.); (K.Č.); (L.H.); (M.C.); (A.Ž.)
| | - Veronika Hýsková
- Department of Biochemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic; (K.B.); (V.H.); (M.V.); (T.K.); (K.Č.); (L.H.); (M.C.); (A.Ž.)
| | - Marie Vašková
- Department of Biochemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic; (K.B.); (V.H.); (M.V.); (T.K.); (K.Č.); (L.H.); (M.C.); (A.Ž.)
| | - Tomáš Křížek
- Department of Biochemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic; (K.B.); (V.H.); (M.V.); (T.K.); (K.Č.); (L.H.); (M.C.); (A.Ž.)
- Department of Analytical Chemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic
| | - Kateřina Čokrtová
- Department of Biochemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic; (K.B.); (V.H.); (M.V.); (T.K.); (K.Č.); (L.H.); (M.C.); (A.Ž.)
- Department of Analytical Chemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic
| | - Tomáš Vaněk
- Biopreparáty, spol. s r.o., Tylišovská 1, 160 00 Prague 6, Czech Republic;
| | - Lucie Halířová
- Department of Biochemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic; (K.B.); (V.H.); (M.V.); (T.K.); (K.Č.); (L.H.); (M.C.); (A.Ž.)
| | - Michal Chudý
- Department of Biochemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic; (K.B.); (V.H.); (M.V.); (T.K.); (K.Č.); (L.H.); (M.C.); (A.Ž.)
| | - Antoniana Žufić
- Department of Biochemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic; (K.B.); (V.H.); (M.V.); (T.K.); (K.Č.); (L.H.); (M.C.); (A.Ž.)
| | - Helena Ryšlavá
- Department of Biochemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic; (K.B.); (V.H.); (M.V.); (T.K.); (K.Č.); (L.H.); (M.C.); (A.Ž.)
- Correspondence: ; Tel.: +420-221-951-282
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Hot Water Treatment Causes Lasting Alteration to the Grapevine (Vitis vinifera L.) Mycobiome and Reduces Pathogenic Species Causing Grapevine Trunk Diseases. J Fungi (Basel) 2022; 8:jof8050485. [PMID: 35628741 PMCID: PMC9144887 DOI: 10.3390/jof8050485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Revised: 04/30/2022] [Accepted: 05/03/2022] [Indexed: 11/23/2022] Open
Abstract
The effective management of grapevine trunk diseases (GTDs) is an ongoing challenge. Hot water treatment (HWT) is an environmentally friendly and economically viable option; however, the short-term effects of HWT on grapevine (Vitis vinifera L.) health and production are not fully understood. The aim of this study was to compare the effects of HWT on plant growth and fungal community structure in nursery stock until plants were completely established in the field. We assessed eleven graft and three rootstock varieties from four local nurseries in a region of Catalonia (NE Spain) where GTDs are a serious threat. After treatment, the plants were left to grow under field conditions for two growing seasons. Metabarcoding of the ITS region was used to study the mycobiomes of plant graft unions and root collars. We also assessed the influence of plant physiological indicators in community composition. Hot water treatment caused lasting changes in GTD communities in both the root collar and graft union that were not always characterized as a reduction of GTD-related fungi. However, HWT reduced the relative abundance of some serious GTD-associated pathogens such as Cadophora luteo-olivacea in graft tissues, and Phaeomoniella chlamydospora and Neofusicoccum parvum in the root collar. Treatment had the greatest influence on the total and GTD-related fungal communities of Chardonnay and Xarel·lo, respectively. Total community variation was driven by treatment and nursery in rootstocks, whereas HWT most significantly affected the GTD community composition in R-110 rootstock. In conclusion, changes in fungal abundance were species-specific and mostly dependent on the plant tissue type; however, HWT did reduce plant biomass accumulation in the short-term.
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15
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Pythium oligandrum in plant protection and growth promotion: Secretion of hydrolytic enzymes, elicitors and tryptamine as auxin precursor. Microbiol Res 2022; 258:126976. [DOI: 10.1016/j.micres.2022.126976] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Revised: 01/20/2022] [Accepted: 01/20/2022] [Indexed: 12/25/2022]
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16
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Chen S, Daly P, Zhou D, Li J, Wang X, Deng S, Feng H, Wang C, Sheikh TMM, Chen Y, Xue T, Cai F, Kubicek CP, Wei L, Druzhinina IS. The use of mutant and engineered microbial agents for biological control of plant diseases caused by Pythium: Achievements versus challenges. FUNGAL BIOL REV 2022. [DOI: 10.1016/j.fbr.2022.03.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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17
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Mundim GDSM, Maciel GM, Mendes GDO. Aspergillus niger as a Biological Input for Improving Vegetable Seedling Production. Microorganisms 2022; 10:microorganisms10040674. [PMID: 35456725 PMCID: PMC9028576 DOI: 10.3390/microorganisms10040674] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Revised: 03/09/2022] [Accepted: 03/11/2022] [Indexed: 02/04/2023] Open
Abstract
This study evaluated the potential of Aspergillus niger as an inoculant for growth promotion of vegetable seedlings. Seven vegetable species were evaluated in independent experiments carried out in 22 + 1 factorial schemes, with two doses of conidia (102 and 106 per plant) applied in two inoculation methods (seed treatment and in-furrow granular application), plus an uninoculated control. Experiments were carried out in a greenhouse. Growth parameters evaluated were shoot length, stem diameter, root volume, total root length, shoot and root fresh mass, shoot and root dry mass, and total dry mass. Regardless of the dose and inoculation method, seedlings inoculated with A. niger showed higher growth than uninoculated ones for all crops. The highest relative increase promoted by the fungus was observed for aboveground parts, increasing the production of shoot fresh mass of lettuce (61%), kale (40%), scarlet eggplant (101%), watermelon (38%), melon (16%), pepper (92%), and tomato (42%). Aspergillus niger inoculation also increased seedling root growth of lettuce, pepper, scarlet eggplant, watermelon, and tomato. This research shows that A. niger boosts the growth of all analyzed vegetables, appearing as a promising bio-input for vegetable seedling production.
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Abstract
Plant roots are colonized by microorganisms from the surrounding soil that belong to different kingdoms and form a multikingdom microbial community called the root microbiota. Despite their importance for plant growth, the relationship between soil management, the root microbiota, and plant performance remains unknown. Here, we characterize the maize root-associated bacterial, fungal, and oomycetal communities during the vegetative and reproductive growth stages of four maize inbred lines and the pht1;6 phosphate transporter mutant. These plants were grown in two long-term experimental fields under four contrasting soil managements, including phosphate-deficient and -sufficient conditions. We showed that the maize root-associated microbiota is influenced by soil management and changes during host growth stages. We identified stable bacterial and fungal root-associated taxa that persist throughout the host life cycle. These taxa were accompanied by dynamic members that covary with changes in root metabolites. We observed an inverse stable-to-dynamic ratio between root-associated bacterial and fungal communities. We also found a host footprint on the soil biota, characterized by a convergence between soil, rhizosphere, and root bacterial communities during reproductive maize growth. Our study reveals the spatiotemporal dynamics of the maize root-associated microbiota and suggests that the fungal assemblage is less responsive to changes in root metabolites than the bacterial community.
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Daly P, Chen S, Xue T, Li J, Sheikh TMM, Zhang Q, Wang X, Zhang J, Fitzpatrick DA, McGowan J, Shi X, Deng S, Jiu M, Zhou D, Druzhinina IS, Wei L. Dual-Transcriptomic, Microscopic, and Biocontrol Analyses of the Interaction Between the Bioeffector Pythium oligandrum and the Pythium Soft-Rot of Ginger Pathogen Pythium myriotylum. Front Microbiol 2021; 12:765872. [PMID: 34867897 PMCID: PMC8637047 DOI: 10.3389/fmicb.2021.765872] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Accepted: 10/20/2021] [Indexed: 11/18/2022] Open
Abstract
Biological control is a promising approach to suppress diseases caused by Pythium spp. such as Pythium soft rot of ginger caused by P. myriotylum. Unusually for a single genus, it also includes species that can antagonize Pythium plant pathogens, such as Pythium oligandrum. We investigated if a new isolate of P. oligandrum could antagonize P. myriotylum, what changes occurred in gene expression when P. oligandrum (antagonist) and P. myriotylum (host) interacted, and whether P. oligandrum could control soft-rot of ginger caused by P. myriotylum. An isolate of P. oligandrum, GAQ1, recovered from soil could antagonize P. myriotylum in a plate-based confrontation assay whereby P. myriotylum became non-viable. The loss of viability of P. myriotylum coupled with how P. oligandrum hyphae could coil around and penetrate the hyphae of P. myriotylum, indicated a predatory interaction. We investigated the transcriptional responses of P. myriotylum and P. oligandrum using dual-RNAseq at a stage in the confrontation where similar levels of total transcripts were measured from each species. As part of the transcriptional response of P. myriotylum to the presence of P. oligandrum, genes including a subset of putative Kazal-type protease inhibitors were strongly upregulated along with cellulases, elicitin-like proteins and genes involved in the repair of DNA double-strand breaks. In P. oligandrum, proteases, cellulases, and peroxidases featured prominently in the upregulated genes. The upregulation along with constitutive expression of P. oligandrum proteases appeared to be responded to by the upregulation of putative protease inhibitors from P. myriotylum, suggesting a P. myriotylum defensive strategy. Notwithstanding this P. myriotylum defensive strategy, P. oligandrum had a strong disease control effect on soft-rot of ginger caused by P. myriotylum. The newly isolated strain of P. oligandrum is a promising biocontrol agent for suppressing the soft-rot of ginger. The dual-RNAseq approach highlights responses of P. myriotylum that suggests features of a defensive strategy, and are perhaps another factor that may contribute to the variable success and durability of biological attempts to control diseases caused by Pythium spp.
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Affiliation(s)
- Paul Daly
- Key Lab of Food Quality and Safety of Jiangsu Province-State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Siqiao Chen
- Key Lab of Food Quality and Safety of Jiangsu Province-State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, China.,Fungal Genomics Laboratory (FungiG), Jiangsu Provincial Key Lab of Organic Solid Waste Utilization, Nanjing Agricultural University, Nanjing, China
| | - Taiqiang Xue
- College of Food and Bioengineering, Henan University of Science and Technology, Luoyang, China
| | - Jingjing Li
- College of Food and Bioengineering, Henan University of Science and Technology, Luoyang, China
| | - Taha Majid Mahmood Sheikh
- Key Lab of Food Quality and Safety of Jiangsu Province-State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Qimeng Zhang
- Key Lab of Food Quality and Safety of Jiangsu Province-State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Xuehai Wang
- Jinan Academy of Agricultural Sciences, Jinan, China
| | - Jinfeng Zhang
- Key Lab of Food Quality and Safety of Jiangsu Province-State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | | | - Jamie McGowan
- Genome Evolution Laboratory, Maynooth University, Maynooth, Ireland
| | - Xiujuan Shi
- Jinan Academy of Agricultural Sciences, Jinan, China
| | - Sheng Deng
- Key Lab of Food Quality and Safety of Jiangsu Province-State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Min Jiu
- College of Food and Bioengineering, Henan University of Science and Technology, Luoyang, China
| | - Dongmei Zhou
- Key Lab of Food Quality and Safety of Jiangsu Province-State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Irina S Druzhinina
- Fungal Genomics Laboratory (FungiG), Jiangsu Provincial Key Lab of Organic Solid Waste Utilization, Nanjing Agricultural University, Nanjing, China
| | - Lihui Wei
- Key Lab of Food Quality and Safety of Jiangsu Province-State Key Laboratory Breeding Base, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, China.,School of Environment and Safety Engineering, Jiangsu University, Zhenjiang, China
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20
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Yang K, Dong X, Li J, Wang Y, Cheng Y, Zhai Y, Li X, Wei L, Jing M, Dou D. Type 2 Nep1-Like Proteins from the Biocontrol Oomycete Pythium oligandrum Suppress Phytophthora capsici Infection in Solanaceous Plants. J Fungi (Basel) 2021; 7:496. [PMID: 34206578 PMCID: PMC8303654 DOI: 10.3390/jof7070496] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Revised: 06/18/2021] [Accepted: 06/21/2021] [Indexed: 02/04/2023] Open
Abstract
As a non-pathogenic oomycete, the biocontrol agent Pythium oligandrum is able to control plant diseases through direct mycoparasite activity and boosting plant immune responses. Several P. oligandrum elicitors have been found to activate plant immunity as microbe-associated molecular patterns (MAMPs). Necrosis- and ethylene-inducing peptide 1 (Nep1)-like proteins (NLPs) are a group of MAMPs widely distributed in eukaryotic and prokaryotic plant pathogens. However, little is known about their distribution and functions in P. oligandrum and its sister species Pythium periplocum. Here, we identified a total of 25 NLPs from P. oligandrum (PyolNLPs) and P. periplocum (PypeNLPs). Meanwhile, we found that PyolNLPs/PypeNLPs genes cluster in two chromosomal segments, and our analysis suggests that they expand by duplication and share a common origin totally different from that of pathogenic oomycetes. Nine PyolNLPs/PypeNLPs induced necrosis in Nicotiana benthamiana by agroinfiltration. Eight partially purified PyolNLPs/PypeNLPs were tested for their potential biocontrol activity. PyolNLP5 and PyolNLP7 showed necrosis-inducing activity in N. benthamiana via direct protein infiltration. At sufficient concentrations, they both significantly reduced disease severity and suppressed the in planta growth of Phytophthora capsici in solanaceous plants including N. benthamiana (tobacco), Solanum lycopersicum (tomato) and Capsicum annuum (pepper). Our assays suggest that the Phytophthora suppression effect of PyolNLP5 and PyolNLP7 is irrelevant to reactive oxygen species (ROS) accumulation. Instead, they induce the expression of antimicrobial plant defensin genes, and the induction depends on their conserved nlp24-like peptide pattern. This work demonstrates the biocontrol role of two P. oligandrum NLPs for solanaceous plants, which uncovers a novel approach of utilizing NLPs to develop bioactive formulae for oomycete pathogen control with no ROS-caused injury to plants.
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Affiliation(s)
- Kun Yang
- The Key Laboratory of Plant Immunity, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China; (K.Y.); (X.D.); (J.L.); (Y.W.); (Y.C.)
| | - Xiaohua Dong
- The Key Laboratory of Plant Immunity, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China; (K.Y.); (X.D.); (J.L.); (Y.W.); (Y.C.)
| | - Jialu Li
- The Key Laboratory of Plant Immunity, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China; (K.Y.); (X.D.); (J.L.); (Y.W.); (Y.C.)
| | - Yi Wang
- The Key Laboratory of Plant Immunity, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China; (K.Y.); (X.D.); (J.L.); (Y.W.); (Y.C.)
| | - Yang Cheng
- The Key Laboratory of Plant Immunity, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China; (K.Y.); (X.D.); (J.L.); (Y.W.); (Y.C.)
| | - Ying Zhai
- Department of Plant Pathology, Washington State University, Pullman, WA 99164, USA;
| | - Xiaobo Li
- Crops Research Institute, Guangdong Academy of Agricultural Sciences/Guangdong Provincial Key Laboratory of Crop Genetic Improvement, Guangzhou 510640, China;
| | - Lihui Wei
- Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China;
| | - Maofeng Jing
- The Key Laboratory of Plant Immunity, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China; (K.Y.); (X.D.); (J.L.); (Y.W.); (Y.C.)
| | - Daolong Dou
- The Key Laboratory of Plant Immunity, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China; (K.Y.); (X.D.); (J.L.); (Y.W.); (Y.C.)
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21
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Pellan L, Dieye CAT, Durand N, Fontana A, Strub C, Schorr-Galindo S. Biocontrol Agents: Toolbox for the Screening of Weapons against Mycotoxigenic Fusarium. J Fungi (Basel) 2021; 7:446. [PMID: 34205071 PMCID: PMC8226957 DOI: 10.3390/jof7060446] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Revised: 05/31/2021] [Accepted: 05/31/2021] [Indexed: 12/22/2022] Open
Abstract
The aim of this study was to develop a set of experiments to screen and decipher the mechanisms of biocontrol agents (BCAs), isolated from commercial formulation, against two major mycotoxigenic fungi in cereals, Fusarium graminearum and Fusarium verticillioides. These two phytopathogens produce mycotoxins harmful to human and animal health and are responsible for the massive use of pesticides, for the protection of cereals. It is therefore essential to better understand the mechanisms of action of alternative control strategies such as the use of BCAs in order to optimize their applications. The early and late stages of interaction between BCAs and pathogens were investigated from germination of spores to the effects on perithecia (survival form of pathogen). The analysis of antagonist activities of BCAs revealed different strategies of biocontrol where chronological, process combination and specialization aspects of interactions are discussed. Streptomyces griseoviridis main strategy is based on antibiosis with the secretion of several compounds with anti-fungal and anti-germination activity, but also a mixture of hydrolytic enzymes to attack pathogens, which compensates for an important deficit in terms of spatial colonization capacity. It has good abilities in terms of nutritional competition. Trichoderma asperellum is capable of activating a very wide range of defenses and attacks combining the synthesis of various antifungal compounds (metabolite, enzymes, VOCs), with different targets (spores, mycelium, mycotoxins), and direct action by mycoparasitism and mycophagy. Concerning Pythium oligandrum, its efficiency is mainly due to its strong capacity to colonize the environment, with a direct action via microbial predation, stimulation of its reproduction at the contact of pathogens and the reduction of perithecia formation.
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Affiliation(s)
- Lucile Pellan
- Qualisud, Univ Montpellier, Avignon Université, CIRAD, Institut Agro, IRD, Université de La Réunion, 34095 Montpellier, France; (L.P.); (C.A.T.D.); (N.D.); (A.F.); (S.S.-G.)
| | - Cheikh Ahmeth Tidiane Dieye
- Qualisud, Univ Montpellier, Avignon Université, CIRAD, Institut Agro, IRD, Université de La Réunion, 34095 Montpellier, France; (L.P.); (C.A.T.D.); (N.D.); (A.F.); (S.S.-G.)
| | - Noël Durand
- Qualisud, Univ Montpellier, Avignon Université, CIRAD, Institut Agro, IRD, Université de La Réunion, 34095 Montpellier, France; (L.P.); (C.A.T.D.); (N.D.); (A.F.); (S.S.-G.)
- CIRAD, UMR Qualisud, 34398 Montpellier, France
| | - Angélique Fontana
- Qualisud, Univ Montpellier, Avignon Université, CIRAD, Institut Agro, IRD, Université de La Réunion, 34095 Montpellier, France; (L.P.); (C.A.T.D.); (N.D.); (A.F.); (S.S.-G.)
| | - Caroline Strub
- Qualisud, Univ Montpellier, Avignon Université, CIRAD, Institut Agro, IRD, Université de La Réunion, 34095 Montpellier, France; (L.P.); (C.A.T.D.); (N.D.); (A.F.); (S.S.-G.)
| | - Sabine Schorr-Galindo
- Qualisud, Univ Montpellier, Avignon Université, CIRAD, Institut Agro, IRD, Université de La Réunion, 34095 Montpellier, France; (L.P.); (C.A.T.D.); (N.D.); (A.F.); (S.S.-G.)
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22
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Myco-Suppression Analysis of Soybean ( Glycine max) Damping-Off Caused by Pythium aphanidermatum. PLANTS 2021; 10:plants10040788. [PMID: 33923755 PMCID: PMC8072875 DOI: 10.3390/plants10040788] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Revised: 04/10/2021] [Accepted: 04/12/2021] [Indexed: 11/17/2022]
Abstract
The role of Pythium oligandrum as a biocontrol agent against Pythium aphanidermatum was investigated to avoid the harmful impacts of fungicides. Three isolates of P. oligandrum (MS15, MS19, and MS31) were assessed facing the plant pathogenic P. aphanidermatum the causal agent of Glycine max damping-off. The tested Pythium species were recognized according to their cultural and microscopic characterizations. The identification was confirmed through sequencing of rDNA-ITS regions including the 5.8 S rDNA. The biocontrol agent, P. oligandrum, isolates decreased the mycelial growth of the pathogenic P. aphanidermatum with 71.3%, 67.1%, and 68.7% through mycoparasitism on CMA plates. While the half-strength millipore sterilized filtrates of P. oligandrum isolates degrade the pathogenic mycelial linear growth by 34.1%, 32.5%, and 31.7%, and reduce the mycelial dry weight of the pathogenic P. aphanidermatum by 40.1%, 37.4%, and 36.8%, respectively. Scanning electron microscopy (SEM) of the most effective antagonistic P. oligandrum isolate (MS15) interaction showed coiling, haustorial parts of P. oligandrum to P. aphanidermatum hyphae. Furthermore, P. oligandrum isolates were proven to enhance the germination of Glycine max seedling to 93.3% in damping-off infection using agar pots and promote germination of up to 80% during soil pot assay. On the other hand, P. oligandrum isolates increase the shoot, root lengths, and the number of lateral roots.
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23
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Bělonožníková K, Vaverová K, Vaněk T, Kolařík M, Hýsková V, Vaňková R, Dobrev P, Křížek T, Hodek O, Čokrtová K, Štípek A, Ryšlavá H. Novel Insights into the Effect of Pythium Strains on Rapeseed Metabolism. Microorganisms 2020; 8:microorganisms8101472. [PMID: 32992822 PMCID: PMC7650609 DOI: 10.3390/microorganisms8101472] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2020] [Revised: 09/18/2020] [Accepted: 09/23/2020] [Indexed: 02/06/2023] Open
Abstract
Pythium oligandrum is a unique biological control agent. This soil oomycete not only acts as a mycoparasite, but also interacts with plant roots and stimulates plant defense response via specific elicitors. In addition, P. oligandrum can synthetize auxin precursors and stimulate plant growth. We analyzed the secretomes and biochemical properties of eleven Pythium isolates to find a novel and effective strain with advantageous features for plants. Our results showed that even closely related P. oligandrum isolates significantly differ in the content of compounds secreted into the medium, and that all strains secrete proteins, amino acids, tryptamine, phenolics, and hydrolytic enzymes capable of degrading cell walls (endo-β-1,3-glucanase, chitinase, and cellulase), exoglycosidases (especially β-glucosidase), proteases, and phosphatases. The most different strain was identified as a not yet described Pythium species. The changes in metabolism of Brassica napus plants grown from seeds coated with the tested Pythium spp. were characterized. Enhanced levels of jasmonates, ethylene precursor, and salicylic acid may indicate better resistance to a wide variety of pathogens. Glucosinolates, as defense compounds against insects and herbivores, were enhanced in young plants. Altogether, P. oligandrum strains varied in their life strategies, and either they could perform equally as plant growth promoters and mycoparasites or they had developed one of these strategies better.
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Affiliation(s)
- Kateřina Bělonožníková
- Department of Biochemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic; (K.B.); (K.V.); (V.H.)
| | - Kateřina Vaverová
- Department of Biochemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic; (K.B.); (K.V.); (V.H.)
| | - Tomáš Vaněk
- Biopreparáty, spol. s r.o., Tylišovská 1, 160 00 Prague 6, Czech Republic; (T.V.); (A.Š.)
| | - Miroslav Kolařík
- Institute of Microbiology, Academy of Sciences of the Czech Republic, Vídeňská 1083, 142 20 Prague 4, Czech Republic;
- Department of Botany, Faculty of Science, Charles University, Benátská 2, 128 01 Prague 2, Czech Republic
| | - Veronika Hýsková
- Department of Biochemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic; (K.B.); (K.V.); (V.H.)
| | - Radomíra Vaňková
- Institute of Experimental Botany, Academy of Sciences of the Czech Republic, Rozvojová 263, 165 02 Prague 6, Czech Republic; (R.V.); (P.D.)
| | - Petre Dobrev
- Institute of Experimental Botany, Academy of Sciences of the Czech Republic, Rozvojová 263, 165 02 Prague 6, Czech Republic; (R.V.); (P.D.)
| | - Tomáš Křížek
- Department of Analytical chemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic; (T.K.); (O.H.); (K.Č.)
| | - Ondřej Hodek
- Department of Analytical chemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic; (T.K.); (O.H.); (K.Č.)
| | - Kateřina Čokrtová
- Department of Analytical chemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic; (T.K.); (O.H.); (K.Č.)
| | - Adam Štípek
- Biopreparáty, spol. s r.o., Tylišovská 1, 160 00 Prague 6, Czech Republic; (T.V.); (A.Š.)
| | - Helena Ryšlavá
- Department of Biochemistry, Faculty of Science, Charles University, Hlavova 2030, 128 43 Prague 2, Czech Republic; (K.B.); (K.V.); (V.H.)
- Correspondence:
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24
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Yacoub A, Magnin N, Gerbore J, Haidar R, Bruez E, Compant S, Guyoneaud R, Rey P. The Biocontrol Root-Oomycete, Pythium Oligandrum, Triggers Grapevine Resistance and Shifts in the Transcriptome of the Trunk Pathogenic Fungus, Phaeomoniella Chlamydospora. Int J Mol Sci 2020; 21:ijms21186876. [PMID: 32961710 PMCID: PMC7555917 DOI: 10.3390/ijms21186876] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Accepted: 09/15/2020] [Indexed: 11/17/2022] Open
Abstract
The worldwide increase in grapevine trunk diseases, mainly esca, represents a major threat for vineyard sustainability. Biocontrol of a pioneer fungus of esca, Phaeomoniella chlamydospora, was investigated here by deciphering the tripartite interaction between this trunk-esca pathogen, grapevine and the biocontrol-oomycete, Pythium oligandrum. When P. oligandrum colonizes grapevine roots, it was observed that the wood necroses caused by P. chlamydospora were significantly reduced. Transcriptomic analyses of plant and fungus responses were performed to determine the molecular events occurring, with the aim to relate P.chlamydospora degradation of wood to gene expression modulation. Following P. oligandrum-root colonization, major transcriptomic changes occurred both, in the grapevine-defense system and in the P. chlamydospore-virulence factors. Grapevine-defense was enhanced in response to P. chlamydospora attacks, with P. oligandrum acting as a plant-systemic resistance inducer, promoting jasmonic/ethylene signaling pathways and grapevine priming. P. chlamydospora pathogenicity genes, such as those related to secondary metabolite biosynthesis, carbohydrate-active enzymes and transcription regulators, were also affected in their expression. Shifts in grapevine responses and key-fungal functions were associated with the reduction of P. chlamydospora wood necroses. This study provides evidence of wood fungal pathogen transcriptional changes induced by a root biocontrol agent, P. oligandrum, in which there is no contact between the two microorganisms.
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Affiliation(s)
- Amira Yacoub
- INRAE, UMR 1065 Santé et Agroécologie du Vignoble (SAVE), Institut des Sciences de la vigne et du Vin (ISVV), 33883 Villenave d’Ornon, France; (A.Y.); (N.M.); (R.H.); (E.B.)
| | - Noel Magnin
- INRAE, UMR 1065 Santé et Agroécologie du Vignoble (SAVE), Institut des Sciences de la vigne et du Vin (ISVV), 33883 Villenave d’Ornon, France; (A.Y.); (N.M.); (R.H.); (E.B.)
| | | | - Rana Haidar
- INRAE, UMR 1065 Santé et Agroécologie du Vignoble (SAVE), Institut des Sciences de la vigne et du Vin (ISVV), 33883 Villenave d’Ornon, France; (A.Y.); (N.M.); (R.H.); (E.B.)
| | - Emilie Bruez
- INRAE, UMR 1065 Santé et Agroécologie du Vignoble (SAVE), Institut des Sciences de la vigne et du Vin (ISVV), 33883 Villenave d’Ornon, France; (A.Y.); (N.M.); (R.H.); (E.B.)
| | - Stéphane Compant
- Bioresources Unit, Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Konrad Lorenz Strasse 24, 3430 Tulln, Austria;
| | - Rémy Guyoneaud
- Institut des Sciences Analytiques et de Physicochimie pour l‘Environnement et les Matériaux—UMR 5254, Microbial Ecology, Université de Pau et des Pays de l’Adour/E2S UPPA/CNRS, IBEAS Avenue de l’Université, 64013 Pau, France;
| | - Patrice Rey
- INRAE, UMR 1065 Santé et Agroécologie du Vignoble (SAVE), Institut des Sciences de la vigne et du Vin (ISVV), 33883 Villenave d’Ornon, France; (A.Y.); (N.M.); (R.H.); (E.B.)
- Correspondence:
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25
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Berlanga-Clavero MV, Molina-Santiago C, de Vicente A, Romero D. More than words: the chemistry behind the interactions in the plant holobiont. Environ Microbiol 2020; 22:4532-4544. [PMID: 32794337 DOI: 10.1111/1462-2920.15197] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Revised: 08/09/2020] [Accepted: 08/11/2020] [Indexed: 02/04/2023]
Abstract
Plants and microbes have evolved sophisticated ways to communicate and coexist. The simplest interactions that occur in plant-associated habitats, i.e., those involved in disease detection, depend on the production of microbial pathogenic and virulence factors and the host's evolved immunological response. In contrast, microbes can also be beneficial for their host plants in a number of ways, including fighting pathogens and promoting plant growth. In order to clarify the mechanisms directly involved in these various plant-microbe interactions, we must still deepen our understanding of how these interkingdom communication systems, which are constantly modulated by resident microbial activity, are established and, most importantly, how their effects can span physically separated plant compartments. Efforts in this direction have revealed a complex and interconnected network of molecules and associated metabolic pathways that modulate plant-microbe and microbe-microbe communication pathways to regulate diverse ecological responses. Once sufficiently understood, these pathways will be biotechnologically exploitable, for example, in the use of beneficial microbes in sustainable agriculture. The aim of this review is to present the latest findings on the dazzlingly diverse arsenal of molecules that efficiently mediate specific microbe-microbe and microbe-plant communication pathways during plant development and on different plant organs.
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Affiliation(s)
- María Victoria Berlanga-Clavero
- Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora", Universidad de Málaga-Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), Departamento de Microbiología, Universidad de Málaga, Bulevar Louis Pasteur 31 (Campus Universitario de Teatinos), Málaga, 29071, Spain
| | - Carlos Molina-Santiago
- Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora", Universidad de Málaga-Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), Departamento de Microbiología, Universidad de Málaga, Bulevar Louis Pasteur 31 (Campus Universitario de Teatinos), Málaga, 29071, Spain
| | - Antonio de Vicente
- Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora", Universidad de Málaga-Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), Departamento de Microbiología, Universidad de Málaga, Bulevar Louis Pasteur 31 (Campus Universitario de Teatinos), Málaga, 29071, Spain
| | - Diego Romero
- Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora", Universidad de Málaga-Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), Departamento de Microbiología, Universidad de Málaga, Bulevar Louis Pasteur 31 (Campus Universitario de Teatinos), Málaga, 29071, Spain
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26
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Plant–microbiome interactions: from community assembly to plant health. Nat Rev Microbiol 2020; 18:607-621. [DOI: 10.1038/s41579-020-0412-1] [Citation(s) in RCA: 597] [Impact Index Per Article: 149.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/18/2020] [Indexed: 01/17/2023]
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Ai G, Yang K, Ye W, Tian Y, Du Y, Zhu H, Li T, Xia Q, Shen D, Peng H, Jing M, Xia A, Dou D. Prediction and Characterization of RXLR Effectors in Pythium Species. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2020; 33:1046-1058. [PMID: 32330072 DOI: 10.1094/mpmi-01-20-0010-r] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
RXLR effectors, a class of secreted proteins that are transferred into host cells to manipulate host immunity, have been reported to widely exist in oomycetes, including those from genera Phytophthora, Hyaloperonospora, Albugo, and Saprolegnia. However, in Pythium species, no RXLR effector has yet been characterized, and the origin and evolution of such virulent effectors are still unknown. Here, we developed a modified regular expression method for de novo identification of RXLRs and characterized 359 putative RXLR effectors in nine Pythium species. Phylogenetic analysis revealed that all oomycetous RXLRs formed a single superfamily, suggesting that they might have a common ancestor. RXLR effectors from Pythium and Phytophthora species exhibited similar sequence features, protein structures, and genome locations. In particular, there were significantly more RXLR proteins in the mosquito biological control agent P. guiyangense than in the other eight Pythium species, and P. guiyangense RXLRs might be the result of gene duplication and genome rearrangement events, as indicated by synteny analysis. Expression pattern analysis of RXLR-encoding genes in the plant pathogen P. ultimum detected transcripts of the majority of the predicted RXLR genes, with some RXLR effectors induced in infection stages and one RXLR showing necrosis-inducing activity. Furthermore, all predicted RXLR genes were cloned from two biocontrol agents, P. oligandrum and P. periplocum, and three of the RXLR genes were found to induce a defense response in Nicotiana benthamiana. Taken together, our findings represent the first evidence of RXLR effectors in Pythium species, providing valuable information on their evolutionary patterns and the mechanisms of their interactions with diverse hosts.
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Affiliation(s)
- Gan Ai
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Kun Yang
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Wenwu Ye
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Yuee Tian
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
- Department of Plant Protection, Henan University of Science and Technology, Luoyang 471000, China
| | - Yaxin Du
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Hai Zhu
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Tianli Li
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Qingyue Xia
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Danyu Shen
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Hao Peng
- Department of Crop and Soil Sciences, Washington State University, Pullman, WA, U.S.A
| | - Maofeng Jing
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Ai Xia
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
| | - Daolong Dou
- College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
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28
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McGowan J, O’Hanlon R, Owens RA, Fitzpatrick DA. Comparative Genomic and Proteomic Analyses of Three Widespread Phytophthora Species: Phytophthora chlamydospora, Phytophthora gonapodyides and Phytophthora pseudosyringae. Microorganisms 2020; 8:microorganisms8050653. [PMID: 32365808 PMCID: PMC7285336 DOI: 10.3390/microorganisms8050653] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2020] [Revised: 04/27/2020] [Accepted: 04/29/2020] [Indexed: 12/16/2022] Open
Abstract
The Phytophthora genus includes some of the most devastating plant pathogens. Here we report draft genome sequences for three ubiquitous Phytophthora species—Phytophthora chlamydospora, Phytophthora gonapodyides, and Phytophthora pseudosyringae. Phytophthora pseudosyringae is an important forest pathogen that is abundant in Europe and North America. Phytophthora chlamydospora and Ph. gonapodyides are globally widespread species often associated with aquatic habitats. They are both regarded as opportunistic plant pathogens. The three sequenced genomes range in size from 45 Mb to 61 Mb. Similar to other oomycete species, tandem gene duplication appears to have played an important role in the expansion of effector arsenals. Comparative analysis of carbohydrate-active enzymes (CAZymes) across 44 oomycete genomes indicates that oomycete lifestyles may be linked to CAZyme repertoires. The mitochondrial genome sequence of each species was also determined, and their gene content and genome structure were compared. Using mass spectrometry, we characterised the extracellular proteome of each species and identified large numbers of proteins putatively involved in pathogenicity and osmotrophy. The mycelial proteome of each species was also characterised using mass spectrometry. In total, the expression of approximately 3000 genes per species was validated at the protein level. These genome resources will be valuable for future studies to understand the behaviour of these three widespread Phytophthora species.
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Affiliation(s)
- Jamie McGowan
- Department of Biology, Maynooth University, Maynooth, W23 F2H6 Co. Kildare, Ireland; (R.A.O.); (D.A.F.)
- Lonsdale Institute for Human Health Research, Maynooth University, Maynooth, W23 F2H6 Co. Kildare, Ireland
- Correspondence:
| | | | - Rebecca A. Owens
- Department of Biology, Maynooth University, Maynooth, W23 F2H6 Co. Kildare, Ireland; (R.A.O.); (D.A.F.)
- Lonsdale Institute for Human Health Research, Maynooth University, Maynooth, W23 F2H6 Co. Kildare, Ireland
| | - David A. Fitzpatrick
- Department of Biology, Maynooth University, Maynooth, W23 F2H6 Co. Kildare, Ireland; (R.A.O.); (D.A.F.)
- Lonsdale Institute for Human Health Research, Maynooth University, Maynooth, W23 F2H6 Co. Kildare, Ireland
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Abstract
The oomycetes are a class of ubiquitous, filamentous microorganisms that include some of the biggest threats to global food security and natural ecosystems. Within the oomycete class are highly diverse species that infect a broad range of animals and plants. Some of the most destructive plant pathogens are oomycetes, such as Phytophthora infestans, the agent of potato late blight and the cause of the Irish famine. Recent years have seen a dramatic increase in the number of sequenced oomycete genomes. Here we review the latest developments in oomycete genomics and some of the important insights that have been gained. Coupled with proteomic and transcriptomic analyses, oomycete genome sequences have revealed tremendous insights into oomycete biology, evolution, genome organization, mechanisms of infection, and metabolism. We also present an updated phylogeny of the oomycete class using a phylogenomic approach based on the 65 oomycete genomes that are currently available.
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Affiliation(s)
- Jamie McGowan
- Genome Evolution Laboratory, Department of Biology, Maynooth University, Maynooth, County Kildare, Ireland; Kathleen Lonsdale Institute for Human Health Research, Maynooth University, Maynooth, County Kildare, Ireland
| | - David A Fitzpatrick
- Genome Evolution Laboratory, Department of Biology, Maynooth University, Maynooth, County Kildare, Ireland; Kathleen Lonsdale Institute for Human Health Research, Maynooth University, Maynooth, County Kildare, Ireland.
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Long-Read Genome Sequence of the Sugar Beet Rhizosphere Mycoparasite Pythium oligandrum. G3-GENES GENOMES GENETICS 2020; 10:431-436. [PMID: 31792008 PMCID: PMC7003069 DOI: 10.1534/g3.119.400746] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Pythium oligandrum is a soil born free living oomycete able to parasitize fungi and oomycetes prey, including important plant and animals pathogens. Pythium oligandrum can colonize endophytically the root tissues of diverse plants where it induces plant defenses. Here we report the first long-read genome sequencing of a P. oligandrum strain sequenced by PacBio technology. Sequencing of genomic DNA loaded onto six SMRT cells permitted the acquisition of 913,728 total reads resulting in 112X genome coverage. The assembly and polishing of the genome sequence yielded180 contigs (N50 = 1.3 Mb; L50 = 12). The size of the genome assembly is 41.9 Mb with a longest contig of 2.7 Mb and 15,007 predicted protein-coding genes among which 95.25% were supported by RNAseq data, thus constituting a new Pythium genome reference. This data will facilitate genomic comparisons of Pythium species that are commensal, beneficial or pathogenic on plant, or parasitic on fungi and oomycete to identify key genetic determinants underpinning their diverse lifestyles. In addition comparison with plant pathogenic or zoopathogenic species will illuminate genomic adaptations for pathogenesis toward widely diverse hosts.
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31
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Wilt and Root Rot Complex of Important Pulse Crops: Their Detection and Integrated Management. Fungal Biol 2020. [DOI: 10.1007/978-3-030-35947-8_6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Kołodziejska R, Studzińska R, Tafelska-Kaczmarek A, Pawluk H, Kwit M, Stasiak B, Woźniak A. The application of safe for humans and the environment Polyversum antifungal agent containing living cells of Pythium oligandrum for biotransformation of prochiral ketones. Bioorg Chem 2019; 92:103204. [PMID: 31472459 DOI: 10.1016/j.bioorg.2019.103204] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Revised: 08/07/2019] [Accepted: 08/14/2019] [Indexed: 02/02/2023]
Abstract
This report presents the whole-cell biotransformation of benzofuranyl-methyl ketone derivatives with the application of Polyversum antifungal agent containing Pythium oligandrum microorganism. Stereochemistry of the reduction of prochiral substrates was modified by the bioconversion conditions (concentration of reagents, a source of the carbon atom, biotransformation medium). In optimized conditions enantioselective process was noted. Secondary alcohols with excellent enantiomeric purity and high yields were obtained. The enantiomeric excess and conversion degree of 1-(benzofuran-2-yl)ethanol, 1-(7-ethylbenzofuran-2-yl)ethanol and 1-(3,7-dimethylbenzofuran-2-yl)ethanol were 99%/98.1%, 94%/94.4% and 99%/72.6%, respectively. In the presence of P. oligandrum, one of the enantiotopic hydrides of the dihydropyridine ring coenzyme is selectively transferred to a re side of the prochiral carbonyl group to give products with S configuration. This study demonstrates an inexpensive, eco-friendly approach in synthesis of optically pure benzofuran derivatives and can be an interesting alternative to organocatalysis. Furthermore, this method can be used in biotechnology processes due to its good chemical performance and a high degree of product isolation.
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Affiliation(s)
- Renata Kołodziejska
- Nicolaus Copernicus University in Toruń, Collegium Medicum in Bydgoszcz, Faculty of Medicine, Department of Medical Biology and Biochemistry, Karłowicza 24, 85-092 Bydgoszcz, Poland.
| | - Renata Studzińska
- Nicolaus Copernicus University in Toruń, Collegium Medicum in Bydgoszcz, Faculty of Pharmacy, Department of Organic Chemistry, Jurasza 2, 85-089 Bydgoszcz, Poland.
| | | | - Hanna Pawluk
- Nicolaus Copernicus University in Toruń, Collegium Medicum in Bydgoszcz, Faculty of Medicine, Department of Medical Biology and Biochemistry, Karłowicza 24, 85-092 Bydgoszcz, Poland.
| | - Marcin Kwit
- Adam Mickiewicz University, Department of Chemistry, Umultowska 89B, 61-614 Poznan, Poland.
| | - Bartosz Stasiak
- Adam Mickiewicz University, Department of Chemistry, Umultowska 89B, 61-614 Poznan, Poland.
| | - Alina Woźniak
- Nicolaus Copernicus University in Toruń, Collegium Medicum in Bydgoszcz, Faculty of Medicine, Department of Medical Biology and Biochemistry, Karłowicza 24, 85-092 Bydgoszcz, Poland.
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Trotel-Aziz P, Abou-Mansour E, Courteaux B, Rabenoelina F, Clément C, Fontaine F, Aziz A. Bacillus subtilis PTA-271 Counteracts Botryosphaeria Dieback in Grapevine, Triggering Immune Responses and Detoxification of Fungal Phytotoxins. FRONTIERS IN PLANT SCIENCE 2019; 10:25. [PMID: 30733727 PMCID: PMC6354549 DOI: 10.3389/fpls.2019.00025] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2018] [Accepted: 01/09/2019] [Indexed: 05/23/2023]
Abstract
Plant pathogens have evolved various strategies to enter hosts and cause diseases. Particularly Neofusicoccum parvum, a member of Botryosphaeria dieback consortium, can secrete the phytotoxins (-)-terremutin and (R)-mellein during grapevine colonization. The contribution of phytotoxins to Botryosphaeria dieback symptoms still remains unknown. Moreover, there are currently no efficient control strategies of this disease, and agro-environmental concerns have raised increasing interest in biocontrol strategies to limit disease spread in vineyards, especially by using some promising beneficial bacteria. Here, we first examined in planta the biocontrol capacity of Bacillus subtilis PTA-271 against N. parvum Np-Bt67 strain producing both (-)-terremutin and (R)-mellein. We then focused on the direct effects of PTA-271 on pathogen growth and the fate of pure phytotoxins, and explored the capacity of PTA-271 to induce or prime grapevine immunity upon pathogen infection or phytotoxin exposure. Results provided evidence that PTA-271 significantly protects grapevine cuttings against N. parvum and significantly primes the expression of PR2 (encoding a β-1,3-glucanase) and NCED2 (9-cis-epoxycarotenoid dioxygenase involved in abscisic acid biosynthesis) genes upon pathogen challenge. Using in vitro plantlets, we also showed that PTA-271 triggers the expression of salicylic acid- and jasmonic acid-responsive genes, including GST1 (encoding a glutathione-S-transferase) involved in detoxification process. However, in PTA-271-pretreated plantlets, exogenous (-)-terremutin strongly lowered the expression of most of upregulated genes, except GST1. Data also indicated that PTA-271 can detoxify both (-)-terremutin and (R)-mellein and antagonize N. parvum under in vitro conditions. Our findings highlight (-)-terremutin and (R)-mellein as key aggressive molecules produced by N. parvum that may weaken grapevine immunity to promote Botryosphaeria dieback symptoms. However, PTA-271 can efficiently attenuate Botryosphaeria dieback by enhancing some host immune responses and detoxifying both phytotoxins produced by N. parvum.
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Affiliation(s)
- Patricia Trotel-Aziz
- Research Unit EA 4707 RIBP, SFR Condorcet FR CNRS 3417, University of Reims Champagne-Ardenne, Reims, France
| | | | - Barbara Courteaux
- Research Unit EA 4707 RIBP, SFR Condorcet FR CNRS 3417, University of Reims Champagne-Ardenne, Reims, France
| | - Fanja Rabenoelina
- Research Unit EA 4707 RIBP, SFR Condorcet FR CNRS 3417, University of Reims Champagne-Ardenne, Reims, France
| | - Christophe Clément
- Research Unit EA 4707 RIBP, SFR Condorcet FR CNRS 3417, University of Reims Champagne-Ardenne, Reims, France
| | - Florence Fontaine
- Research Unit EA 4707 RIBP, SFR Condorcet FR CNRS 3417, University of Reims Champagne-Ardenne, Reims, France
| | - Aziz Aziz
- Research Unit EA 4707 RIBP, SFR Condorcet FR CNRS 3417, University of Reims Champagne-Ardenne, Reims, France
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Postulkova M, Rezanina J, Fiala J, Ruzicka MC, Dostalek P, Branyik T. Suppression of fungal contamination by Pythium oligandrum
during malting of barley. JOURNAL OF THE INSTITUTE OF BREWING 2018. [DOI: 10.1002/jib.518] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Michaela Postulkova
- Department of Biotechnology; University of Chemistry and Technology; Technicka 5 166 28 Prague Czech Republic
- Department of Multiphase Reactors; Institute of Chemical Process Fundamentals, Czech Academy of Sciences; Rozvojova 135 165 02 Prague Czech Republic
| | - Jan Rezanina
- Department of Biotechnology; University of Chemistry and Technology; Technicka 5 166 28 Prague Czech Republic
| | - Jaromir Fiala
- Department of Biotechnology; University of Chemistry and Technology; Technicka 5 166 28 Prague Czech Republic
- Research Institute of Brewing and Malting; Lipova 15 120 44 Prague Czech Republic
| | - Marek C. Ruzicka
- Department of Multiphase Reactors; Institute of Chemical Process Fundamentals, Czech Academy of Sciences; Rozvojova 135 165 02 Prague Czech Republic
| | - Pavel Dostalek
- Department of Biotechnology; University of Chemistry and Technology; Technicka 5 166 28 Prague Czech Republic
| | - Tomas Branyik
- Department of Biotechnology; University of Chemistry and Technology; Technicka 5 166 28 Prague Czech Republic
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Gabrielová A, Mencl K, Suchánek M, Klimeš R, Hubka V, Kolařík M. The Oomycete Pythium oligandrum Can Suppress and Kill the Causative Agents of Dermatophytoses. Mycopathologia 2018; 183:751-764. [PMID: 29967972 PMCID: PMC6156753 DOI: 10.1007/s11046-018-0277-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2017] [Accepted: 05/30/2018] [Indexed: 11/30/2022]
Abstract
Pythium oligandrum (Oomycota) is known for its strong mycoparasitism against more than 50 fungal and oomycete species. However, the ability of this oomycete to suppress and kill the causal agents of dermatophytoses is yet to be studied. We provide a complex study of the interactions between P. oligandrum and dermatophytes representing all species dominating in the developed countries. We assessed its biocidal potential by performing growth tests, on both solid and liquid cultivation media and by conducting a pilot clinical study. In addition, we studied the molecular background of mycoparasitism using expression profiles of genes responsible for the attack on the side of P. oligandrum and the stress response on the side of Microsporum canis. We showed that dermatophytes are efficiently suppressed or killed by P. oligandrum in the artificial conditions of cultivations media between 48 and 72 h after first contact. Significant intra- and interspecies variability was noted. Of the 69 patients included in the acute regimen study, symptoms were completely eliminated in 79% of the patients suffering from foot odour, hyperhidrosis disappeared in 67% of cases, clinical signs of dermatomycoses could no longer be observed in 83% of patients, and 15% of persons were relieved of symptoms of onychomycosis. Our investigations provide clear evidence that the oomycete is able to recognize and kill dermatophytes using recognition mechanisms that resemble those described in oomycetes attacking fungi infecting plants, albeit with some notable differences.
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Affiliation(s)
- Alena Gabrielová
- Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology, Czech Academy of Sciences, Vídeňská 1083, 14220, Praha 4, Czech Republic
| | - Karel Mencl
- Laboratory of Medical Mycology, Department of Microbiology, Pardubice Regional Hospital, 56024, Pardubice, Czech Republic
| | - Martin Suchánek
- Bio Agens Research and Development - BARD, Rýznerova 150, 25262, Únětice, Czech Republic
- Biopreparáty spol. s. r.o., Rýznerova 150, 25262, Únětice, Czech Republic
| | - Radim Klimeš
- Bio Agens Research and Development - BARD, Rýznerova 150, 25262, Únětice, Czech Republic
| | - Vít Hubka
- Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology, Czech Academy of Sciences, Vídeňská 1083, 14220, Praha 4, Czech Republic
| | - Miroslav Kolařík
- Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology, Czech Academy of Sciences, Vídeňská 1083, 14220, Praha 4, Czech Republic.
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Mondello V, Songy A, Battiston E, Pinto C, Coppin C, Trotel-Aziz P, Clément C, Mugnai L, Fontaine F. Grapevine Trunk Diseases: A Review of Fifteen Years of Trials for Their Control with Chemicals and Biocontrol Agents. PLANT DISEASE 2018; 102:1189-1217. [PMID: 30673583 DOI: 10.1094/pdis-08-17-1181-fe] [Citation(s) in RCA: 134] [Impact Index Per Article: 22.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Grapevine trunk diseases (GTDs) represent one of the most important problems for viticulture worldwide. Beyond the original causes of this outbreak in some countries like France, the lack of efficient control protocols and the prohibition of using active ingredients such as sodium arsenite and benzimidazoles, until recently used to reduce the impact of some GTDs but deleterious for humans and the environment, have probably worsened the impact of the diseases, leading to increasing economic losses. Since 1990, searches have been made to find efficient tools to control GTDs, testing a wide range of active ingredients and biocontrol agents. This review provides readers with an overview of the results reported in the scientific literature over the last 15 years. In particular, the review focuses on the trials carried out applying chemicals or microorganisms to control Esca complex diseases, Botryosphaeria dieback, and Eutypa dieback, the most widespread GTDs.
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Affiliation(s)
- Vincenzo Mondello
- SFR Condorcet, Université de Reims Champagne-Ardenne, URVVC EA 4707, Laboratoire Stress, Défenses et Reproduction des Plantes, BP 1039, Reims, Cedex 2 51687, France
| | - Aurélie Songy
- SFR Condorcet, Université de Reims Champagne-Ardenne, URVVC EA 4707, Laboratoire Stress, Défenses et Reproduction des Plantes, BP 1039, Reims, Cedex 2 51687, France
| | - Enrico Battiston
- SFR Condorcet, Université de Reims Champagne-Ardenne, URVVC EA 4707, Laboratoire Stress, Défenses et Reproduction des Plantes, BP 1039, Reims, Cedex 2 51687, France, and Dipartimento di Scienze delle Produzioni Agroalimentari e dell'Ambiente - Sezione Patologia Vegetale ed Entomologia, Università degli Studi di Firenze, Firenze I-50144, Italy
| | - Catia Pinto
- SFR Condorcet, Université de Reims Champagne-Ardenne, URVVC EA 4707, Laboratoire Stress, Défenses et Reproduction des Plantes, BP 1039, Reims, Cedex 2 51687, France
| | - Cindy Coppin
- SFR Condorcet, Université de Reims Champagne-Ardenne, URVVC EA 4707, Laboratoire Stress, Défenses et Reproduction des Plantes, BP 1039, Reims, Cedex 2 51687, France
| | - Patricia Trotel-Aziz
- SFR Condorcet, Université de Reims Champagne-Ardenne, URVVC EA 4707, Laboratoire Stress, Défenses et Reproduction des Plantes, BP 1039, Reims, Cedex 2 51687, France
| | - Christophe Clément
- SFR Condorcet, Université de Reims Champagne-Ardenne, URVVC EA 4707, Laboratoire Stress, Défenses et Reproduction des Plantes, BP 1039, Reims, Cedex 2 51687, France
| | - Laura Mugnai
- Dipartimento di Scienze delle Produzioni Agroalimentari e dell'Ambiente - Sezione Patologia Vegetale ed Entomologia, Università degli Studi di Firenze, Firenze I-50144, Italy
| | - Florence Fontaine
- SFR Condorcet, Université de Reims Champagne-Ardenne, URVVC EA 4707, Laboratoire Stress, Défenses et Reproduction des Plantes, BP 1039, Reims, Cedex 2 51687, France
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Hassani MA, Durán P, Hacquard S. Microbial interactions within the plant holobiont. MICROBIOME 2018; 6:58. [PMID: 29587885 PMCID: PMC5870681 DOI: 10.1186/s40168-018-0445-0] [Citation(s) in RCA: 492] [Impact Index Per Article: 82.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2017] [Accepted: 03/13/2018] [Indexed: 05/09/2023]
Abstract
Since the colonization of land by ancestral plant lineages 450 million years ago, plants and their associated microbes have been interacting with each other, forming an assemblage of species that is often referred to as a "holobiont." Selective pressure acting on holobiont components has likely shaped plant-associated microbial communities and selected for host-adapted microorganisms that impact plant fitness. However, the high microbial densities detected on plant tissues, together with the fast generation time of microbes and their more ancient origin compared to their host, suggest that microbe-microbe interactions are also important selective forces sculpting complex microbial assemblages in the phyllosphere, rhizosphere, and plant endosphere compartments. Reductionist approaches conducted under laboratory conditions have been critical to decipher the strategies used by specific microbes to cooperate and compete within or outside plant tissues. Nonetheless, our understanding of these microbial interactions in shaping more complex plant-associated microbial communities, along with their relevance for host health in a more natural context, remains sparse. Using examples obtained from reductionist and community-level approaches, we discuss the fundamental role of microbe-microbe interactions (prokaryotes and micro-eukaryotes) for microbial community structure and plant health. We provide a conceptual framework illustrating that interactions among microbiota members are critical for the establishment and the maintenance of host-microbial homeostasis.
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Affiliation(s)
- M Amine Hassani
- Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829, Cologne, Germany
- Environmental Genomics, Christian-Albrechts University of Kiel, 24118, Kiel, Germany
- Max Planck Institute for Evolutionary Biology, 24306, Plön, Germany
| | - Paloma Durán
- Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829, Cologne, Germany
| | - Stéphane Hacquard
- Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829, Cologne, Germany.
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Genomic, Network, and Phylogenetic Analysis of the Oomycete Effector Arsenal. mSphere 2017; 2:mSphere00408-17. [PMID: 29202039 PMCID: PMC5700374 DOI: 10.1128/msphere.00408-17] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2017] [Accepted: 11/02/2017] [Indexed: 02/07/2023] Open
Abstract
The oomycetes are a class of microscopic, filamentous eukaryotes and include ecologically significant animal and plant pathogens. Oomycetes secrete large arsenals of effector proteins that degrade host cell components, manipulate host immune responses, and induce necrosis, enabling parasitic colonization. In this study, we catalogued the number and evolution of effectors in 37 oomycete species whose genomes have been completely sequenced. Large expansions of effector protein families in Phytophthora species, including glycoside hydrolases, pectinases, and necrosis-inducing proteins, were observed. Species-specific expansions were detected, including chitinases in Aphanomyces astaci and Pythium oligandrum. Novel effectors which may be involved in suppressing animal immune responses were identified in Ap. astaci and Py. oligandrum. Type 2 necrosis-inducing proteins with an unusual phylogenetic history were also located. This work represents an up-to-date in silico catalogue of the effector arsenal of the oomycetes based on the 37 genomes currently available. The oomycetes are a class of microscopic, filamentous eukaryotes within the stramenopiles-alveolate-Rhizaria (SAR) supergroup and include ecologically significant animal and plant pathogens. Oomycetes secrete large arsenals of effector proteins that degrade host cell components, manipulate host immune responses, and induce necrosis, enabling parasitic colonization. This study investigated the expansion and evolution of effectors in 37 oomycete species in 4 oomycete orders, including Albuginales, Peronosporales, Pythiales, and Saprolegniales species. Our results highlight the large expansions of effector protein families, including glycoside hydrolases, pectinases, and necrosis-inducing proteins, in Phytophthora species. Species-specific expansions, including expansions of chitinases in Aphanomyces astaci and Pythium oligandrum, were detected. Novel effectors which may be involved in suppressing animal immune responses in Ap. astaci and Py. insidiosum were also identified. Type 2 necrosis-inducing proteins with an unusual phylogenetic history were also located in a number of oomycete species. We also investigated the "RxLR" effector complement of all 37 species and, as expected, observed large expansions in Phytophthora species numbers. Our results provide in-depth sequence information on all putative RxLR effectors from all 37 species. This work represents an up-to-date in silico catalogue of the effector arsenal of the oomycetes based on the 37 genomes currently available. IMPORTANCE The oomycetes are a class of microscopic, filamentous eukaryotes and include ecologically significant animal and plant pathogens. Oomycetes secrete large arsenals of effector proteins that degrade host cell components, manipulate host immune responses, and induce necrosis, enabling parasitic colonization. In this study, we catalogued the number and evolution of effectors in 37 oomycete species whose genomes have been completely sequenced. Large expansions of effector protein families in Phytophthora species, including glycoside hydrolases, pectinases, and necrosis-inducing proteins, were observed. Species-specific expansions were detected, including chitinases in Aphanomyces astaci and Pythium oligandrum. Novel effectors which may be involved in suppressing animal immune responses were identified in Ap. astaci and Py. oligandrum. Type 2 necrosis-inducing proteins with an unusual phylogenetic history were also located. This work represents an up-to-date in silico catalogue of the effector arsenal of the oomycetes based on the 37 genomes currently available.
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Draft Genome Sequence of the Mycoparasitic Oomycete Pythium oligandrum Strain CBS 530.74. GENOME ANNOUNCEMENTS 2017; 5:5/21/e00346-17. [PMID: 28546478 PMCID: PMC5477391 DOI: 10.1128/genomea.00346-17] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
Abstract
The oomycete Pythium oligandrum is a mycoparasite and licenced biological control agent. Here, we report the draft genome sequence of P. oligandrum strain CBS 530.74, which is 36.80 Mb. It contains 341 scaffolds and 11,647 predicted protein-coding genes. As reported for plant-pathogenic Pythium species, RXLR-type effector sequences are absent.
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Phylogenomic Reconstruction of the Oomycete Phylogeny Derived from 37 Genomes. mSphere 2017; 2:mSphere00095-17. [PMID: 28435885 PMCID: PMC5390094 DOI: 10.1128/msphere.00095-17] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2017] [Accepted: 03/24/2017] [Indexed: 12/17/2022] Open
Abstract
The oomycetes are a class of eukaryotes and include ecologically significant animal and plant pathogens. Single-gene and multigene phylogenetic studies of individual oomycete genera and of members of the larger classes have resulted in conflicting conclusions concerning interspecies relationships among these species, particularly for the Phytophthora genus. The onset of next-generation sequencing techniques now means that a wealth of oomycete genomic data is available. For the first time, we have used genome-scale phylogenetic methods to resolve oomycete phylogenetic relationships. We used supertree methods to generate single-gene and multigene species phylogenies. Overall, our supertree analyses utilized phylogenetic data from 8,355 oomycete gene families. We have also complemented our analyses with superalignment phylogenies derived from 131 single-copy ubiquitous gene families. Our results show that a genome-scale approach to oomycete phylogeny resolves oomycete classes and clades. Our analysis represents an important first step in large-scale phylogenomic analysis of the oomycetes. The oomycetes are a class of microscopic, filamentous eukaryotes within the Stramenopiles-Alveolata-Rhizaria (SAR) supergroup which includes ecologically significant animal and plant pathogens, most infamously the causative agent of potato blight Phytophthora infestans. Single-gene and concatenated phylogenetic studies both of individual oomycete genera and of members of the larger class have resulted in conflicting conclusions concerning species phylogenies within the oomycetes, particularly for the large Phytophthora genus. Genome-scale phylogenetic studies have successfully resolved many eukaryotic relationships by using supertree methods, which combine large numbers of potentially disparate trees to determine evolutionary relationships that cannot be inferred from individual phylogenies alone. With a sufficient amount of genomic data now available, we have undertaken the first whole-genome phylogenetic analysis of the oomycetes using data from 37 oomycete species and 6 SAR species. In our analysis, we used established supertree methods to generate phylogenies from 8,355 homologous oomycete and SAR gene families and have complemented those analyses with both phylogenomic network and concatenated supermatrix analyses. Our results show that a genome-scale approach to oomycete phylogeny resolves oomycete classes and individual clades within the problematic Phytophthora genus. Support for the resolution of the inferred relationships between individual Phytophthora clades varies depending on the methodology used. Our analysis represents an important first step in large-scale phylogenomic analysis of the oomycetes. IMPORTANCE The oomycetes are a class of eukaryotes and include ecologically significant animal and plant pathogens. Single-gene and multigene phylogenetic studies of individual oomycete genera and of members of the larger classes have resulted in conflicting conclusions concerning interspecies relationships among these species, particularly for the Phytophthora genus. The onset of next-generation sequencing techniques now means that a wealth of oomycete genomic data is available. For the first time, we have used genome-scale phylogenetic methods to resolve oomycete phylogenetic relationships. We used supertree methods to generate single-gene and multigene species phylogenies. Overall, our supertree analyses utilized phylogenetic data from 8,355 oomycete gene families. We have also complemented our analyses with superalignment phylogenies derived from 131 single-copy ubiquitous gene families. Our results show that a genome-scale approach to oomycete phylogeny resolves oomycete classes and clades. Our analysis represents an important first step in large-scale phylogenomic analysis of the oomycetes.
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41
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High-throughput sequencing reveals diverse oomycete communities in oligotrophic peat bog micro-habitat. FUNGAL ECOL 2016. [DOI: 10.1016/j.funeco.2016.05.009] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Chen HY, Huh JH, Yu YC, Ho LH, Chen LQ, Tholl D, Frommer WB, Guo WJ. The Arabidopsis vacuolar sugar transporter SWEET2 limits carbon sequestration from roots and restricts Pythium infection. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2015; 83:1046-58. [PMID: 26234706 DOI: 10.1111/tpj.12948] [Citation(s) in RCA: 133] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2015] [Revised: 07/17/2015] [Accepted: 07/20/2015] [Indexed: 05/04/2023]
Abstract
Plant roots secrete a significant portion of their assimilated carbon into the rhizosphere. The putative sugar transporter SWEET2 is highly expressed in Arabidopsis roots. Expression patterns of SWEET2-β-glucuronidase fusions confirmed that SWEET2 accumulates highly in root cells and thus may contribute to sugar secretion, specifically from epidermal cells of the root apex. SWEET2-green fluorescent protein fusions localized to the tonoplast, which engulfs the major sugar storage compartment. Functional analysis of SWEET2 activity in yeast showed low uptake activity for the glucose analog 2-deoxyglucose, consistent with a role in the transport of glucose across the tonoplast. Loss-of-function sweet2 mutants showed reduced tolerance to excess glucose, lower glucose accumulation in leaves, and 15-25% higher glucose-derived carbon efflux from roots, suggesting that SWEET2 has a role in preventing the loss of sugar from root tissue. SWEET2 root expression was induced more than 10-fold during Pythium infection. Importantly, sweet2 mutants were more susceptible to the oomycete, showing impaired growth after infection. We propose that root-expressed vacuolar SWEET2 modulates sugar secretion, possibly by reducing the availability of glucose sequestered in the vacuole, thereby limiting carbon loss to the rhizosphere. Moreover, the reduced availability of sugar in the rhizosphere due to SWEET2 activity contributes to resistance to Pythium.
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Affiliation(s)
- Hsin-Yi Chen
- Institute of Tropical Plant Science, National Cheng Kung University, Tainan City, 7013, Taiwan
| | - Jung-Hyun Huh
- Department of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA
| | - Ya-Chi Yu
- Institute of Tropical Plant Science, National Cheng Kung University, Tainan City, 7013, Taiwan
| | - Li-Hsuan Ho
- Institute of Tropical Plant Science, National Cheng Kung University, Tainan City, 7013, Taiwan
| | - Li-Qing Chen
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, 94305, USA
| | - Dorothea Tholl
- Department of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA
| | - Wolf B Frommer
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, 94305, USA
| | - Woei-Jiun Guo
- Institute of Tropical Plant Science, National Cheng Kung University, Tainan City, 7013, Taiwan
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, 94305, USA
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Ouyang Z, Li X, Huang L, Hong Y, Zhang Y, Zhang H, Li D, Song F. Elicitin-like proteins Oli-D1 and Oli-D2 from Pythium oligandrum trigger hypersensitive response in Nicotiana benthamiana and induce resistance against Botrytis cinerea in tomato. MOLECULAR PLANT PATHOLOGY 2015; 16:238-50. [PMID: 25047132 PMCID: PMC6638515 DOI: 10.1111/mpp.12176] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
The biocontrol agent Pythium oligandrum and its elicitin-like proteins oligandrins have been shown to induce disease resistance in a range of plants. In the present study, the ability of two oligandrins, Oli-D1 and Oli-D2, to induce an immune response and the possible molecular mechanism regulating the defence responses in Nicotiana benthamiana and tomato were investigated. Infiltration of recombinant Oli-D1 and Oli-D2 proteins induced a typical immune response in N. benthamiana including the induction of a hypersensitive response (HR), accumulation of reactive oxygen species and production of autofluorescence. Agrobacterium-mediated transient expression assays revealed that full-length Oli-D1 and Oli-D2 were required for full HR-inducing activity in N. benthamiana, and virus-induced gene silencing-mediated knockdown of some of the signalling regulatory genes demonstrated that NbSGT1 and NbNPR1 were required for Oli-D1 and Oli-D2 to induce HR in N. benthamiana. Subcellular localization analyses indicated that both Oli-D1 and Oli-D2 were targeted to the plasma membrane of N. benthamiana. When infiltrated or transiently expressed in leaves, Oli-D1 and Oli-D2 induced resistance against Botrytis cinerea in tomato and activated the expression of a set of genes involved in the jasmonic acid/ethylene (JA/ET)-mediated signalling pathway. Our results demonstrate that Oli-D1 and Oli-D2 are effective elicitors capable of inducing immune responses in plants, probably through the JA/ET-mediated signalling pathway, and that both Oli-D1 and Oli-D2 have potential for the development of bioactive formulae for crop disease control in practice.
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Affiliation(s)
- Zhigang Ouyang
- National Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China
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Gerbore J, Vallance J, Yacoub A, Delmotte F, Grizard D, Regnault-Roger C, Rey P. Characterization of Pythium oligandrum populations that colonize the rhizosphere of vines from the Bordeaux region. FEMS Microbiol Ecol 2014; 90:153-67. [PMID: 25041717 DOI: 10.1111/1574-6941.12380] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2014] [Revised: 06/26/2014] [Accepted: 07/04/2014] [Indexed: 11/28/2022] Open
Abstract
This study focused on one oomycete, Pythium oligandrum, well-known for its plant protection abilities, which thrives in microbial environment where bacteria and fungal communities are also present. The genetic structures and dynamics of fungal and bacterial communities were studied in three Bordeaux subregions with various types of soil, using single-strand conformation polymorphism. The structure of the fungal communities colonizing the rhizosphere of vines planted in sandy-stony soils was markedly different from that those planted in silty and sandy soils; such differences were not observed for bacteria. In our 2-year experiment, the roots of all the vine samples were also colonized by echinulated oospore Pythium species, with P. oligandrum predominating. Cytochrome oxidase I and tubulin gene sequencings showed that P. oligandrum strains clustered into three groups. Based on elicitin-like genes coding for proteins able to induce plant resistance, six populations were identified. However, none of these groups was assigned to a particular subregion of Bordeaux vineyards, suggesting that these factors do not shape the genetic structure of P. oligandrum populations. Results showed that different types of rootstock and weeding management both influence root colonization by P. oligandrum. These results should prove particularly useful in improving the management of potentially plant-protective microorganisms.
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Affiliation(s)
- Jonathan Gerbore
- INRA, UMR1065 Santé et Agroécologie du Vignoble (SAVE), ISVV, Villenave d'Ornon, France; BIOVITIS, Saint Etienne de Chomeil, France; UMR CNRS 5254/IPREM-EEM, IBEAS, Université de Pau et des Pays de l'Adour, Pau, France
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Gerbore J, Benhamou N, Vallance J, Le Floch G, Grizard D, Regnault-Roger C, Rey P. Biological control of plant pathogens: advantages and limitations seen through the case study of Pythium oligandrum. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2014; 21:4847-60. [PMID: 23695856 DOI: 10.1007/s11356-013-1807-6] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2013] [Accepted: 05/06/2013] [Indexed: 04/15/2023]
Abstract
The management of certain plant beneficial microorganisms [biological control agents (BCAs)] seems to be a promising and environmental friendly method to control plant pathogens. However, applications are still limited because of the lack of consistency of BCAs when they are applied in the field. In the present paper, the advantages and limitations of BCAs are seen through the example of Pythium oligandrum, an oomycete that has received much attention in the last decade. The biological control exerted by P. oligandrum is the result of a complex process, which includes direct effects through the control of pathogens and/or indirect effects mediated by P. oligandrum, i.e. induction of resistance and growth promotion. P. oligandrum antagonism is a multifaceted and target fungus-dependent process. Interestingly, it does not seem to disrupt microflora biodiversity on the roots. P. oligandrum has an atypical relationship with the plant because it rapidly penetrates into the root tissues but it cannot stay alive in planta. After root colonisation, because of the elicitation by P. oligandrum of the plant-defence system, plants are protected from a range of pathogens. The management of BCAs, here P. oligandrum, is discussed with regard to its interactions with the incredibly complex agrosystems.
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Affiliation(s)
- J Gerbore
- INRA, ISVV, UMR1065 Santé et Agroécologie du Vignoble (SAVE), 33140, Villenave d'Ornon, France
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Scientific Opinion on the maintenance of the list of QPS biological agents intentionally added to food and feed (2013 update). EFSA J 2013. [DOI: 10.2903/j.efsa.2013.3449] [Citation(s) in RCA: 90] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
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