1
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Sarkar T, Krajnc M. Graph topological transformations in space-filling cell aggregates. PLoS Comput Biol 2024; 20:e1012089. [PMID: 38743660 PMCID: PMC11093388 DOI: 10.1371/journal.pcbi.1012089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Accepted: 04/19/2024] [Indexed: 05/16/2024] Open
Abstract
Cell rearrangements are fundamental mechanisms driving large-scale deformations of living tissues. In three-dimensional (3D) space-filling cell aggregates, cells rearrange through local topological transitions of the network of cell-cell interfaces, which is most conveniently described by the vertex model. Since these transitions are not yet mathematically properly formulated, the 3D vertex model is generally difficult to implement. The few existing implementations rely on highly customized and complex software-engineering solutions, which cannot be transparently delineated and are thus mostly non-reproducible. To solve this outstanding problem, we propose a reformulation of the vertex model. Our approach, called Graph Vertex Model (GVM), is based on storing the topology of the cell network into a knowledge graph with a particular data structure that allows performing cell-rearrangement events by simple graph transformations. Importantly, when these same transformations are applied to a two-dimensional (2D) polygonal cell aggregate, they reduce to a well-known T1 transition, thereby generalizing cell-rearrangements in 2D and 3D space-filling packings. This result suggests that the GVM's graph data structure may be the most natural representation of cell aggregates and tissues. We also develop a Python package that implements GVM, relying on a graph-database-management framework Neo4j. We use this package to characterize an order-disorder transition in 3D cell aggregates, driven by active noise and we find aggregates undergoing efficient ordering close to the transition point. In all, our work showcases knowledge graphs as particularly suitable data models for structured storage, analysis, and manipulation of tissue data.
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Affiliation(s)
- Tanmoy Sarkar
- Department of Theoretical Physics, Jožef Stefan Institute, Ljubljana, Slovenia
| | - Matej Krajnc
- Department of Theoretical Physics, Jožef Stefan Institute, Ljubljana, Slovenia
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2
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Matsuda M, Rozman J, Ostvar S, Kasza KE, Sokol SY. Mechanical control of neural plate folding by apical domain alteration. Nat Commun 2023; 14:8475. [PMID: 38123550 PMCID: PMC10733383 DOI: 10.1038/s41467-023-43973-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Accepted: 11/23/2023] [Indexed: 12/23/2023] Open
Abstract
Vertebrate neural tube closure is associated with complex changes in cell shape and behavior, however, the relative contribution of these processes to tissue folding is not well understood. At the onset of Xenopus neural tube folding, we observed alternation of apically constricted and apically expanded cells. This apical domain heterogeneity was accompanied by biased cell orientation along the anteroposterior axis, especially at neural plate hinges, and required planar cell polarity signaling. Vertex models suggested that dispersed isotropically constricting cells can cause the elongation of adjacent cells. Consistently, in ectoderm, cell-autonomous apical constriction was accompanied by neighbor expansion. Thus, a subset of isotropically constricting cells may initiate neural plate bending, whereas a 'tug-of-war' contest between the force-generating and responding cells reduces its shrinking along the body axis. This mechanism is an alternative to anisotropic shrinking of cell junctions that are perpendicular to the body axis. We propose that apical domain changes reflect planar polarity-dependent mechanical forces operating during neural folding.
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Affiliation(s)
- Miho Matsuda
- Department of Cell, Developmental and Regenerative Biology, Icahn School of Medicine at Mount Sinai, New York, NY, USA
| | - Jan Rozman
- Rudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford, UK
| | - Sassan Ostvar
- Department of Mechanical Engineering, Columbia University, New York, NY, USA
| | - Karen E Kasza
- Department of Mechanical Engineering, Columbia University, New York, NY, USA
| | - Sergei Y Sokol
- Department of Cell, Developmental and Regenerative Biology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
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3
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Rozman J, Yeomans JM, Sknepnek R. Shape-Tension Coupling Produces Nematic Order in an Epithelium Vertex Model. PHYSICAL REVIEW LETTERS 2023; 131:228301. [PMID: 38101347 DOI: 10.1103/physrevlett.131.228301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Revised: 06/26/2023] [Accepted: 10/20/2023] [Indexed: 12/17/2023]
Abstract
We study the vertex model for epithelial tissue mechanics extended to include coupling between the cell shapes and tensions in cell-cell junctions. This coupling represents an active force which drives the system out of equilibrium and leads to the formation of nematic order interspersed with prominent, long-lived +1 defects. The defects in the nematic ordering are coupled to the shape of the cell tiling, affecting cell areas and coordinations. This intricate interplay between cell shape, size, and coordination provides a possible mechanism by which tissues could spontaneously develop long-range polarity through local mechanical forces without resorting to long-range chemical patterning.
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Affiliation(s)
- Jan Rozman
- Rudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford OX1 3PU, United Kingdom
| | - Julia M Yeomans
- Rudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford OX1 3PU, United Kingdom
| | - Rastko Sknepnek
- School of Science and Engineering, University of Dundee, Dundee DD1 4HN, United Kingdom
- School of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom
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4
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Herrera-Perez RM, Cupo C, Allan C, Dagle AB, Kasza KE. Tissue flows are tuned by actomyosin-dependent mechanics in developing embryos. PRX LIFE 2023; 1:013004. [PMID: 38736460 PMCID: PMC11086709 DOI: 10.1103/prxlife.1.013004] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2024]
Abstract
Rapid epithelial tissue flows are essential to building and shaping developing embryos. However, the mechanical properties of embryonic epithelial tissues and the factors that control these properties are not well understood. Actomyosin generates contractile tensions and contributes to the mechanical properties of cells and cytoskeletal networks in vitro, but it remains unclear how the levels and patterns of actomyosin activity contribute to embryonic epithelial tissue mechanics in vivo. To dissect the roles of cell-generated tensions in the mechanics of flowing epithelial tissues, we use optogenetic tools to manipulate actomyosin contractility with spatiotemporal precision in the Drosophila germband epithelium, which rapidly flows during body axis elongation. We find that manipulating actomyosin-dependent tensions by either optogenetic activation or deactivation of actomyosin alters the solid-fluid mechanical properties of the germband epithelium, leading to changes in cell rearrangements and tissue-level flows. Optogenetically activating actomyosin leads to increases in the overall level but decreases in the anisotropy of tension in the tissue, whereas optogenetically deactivating actomyosin leads to decreases in both the level and anisotropy of tension compared to in wild-type embryos. We find that optogenetically activating actomyosin results in more solid-like (less fluid-like) tissue properties, which is associated with reduced cell rearrangements and tissue flow compared to in wild-type embryos. Optogenetically deactivating actomyosin also results in more solid-like properties than in wild-type embryos but less solid-like properties compared to optogenetically activating actomyosin. Together, these findings indicate that increasing the overall tension level is associated with more solid-like properties in tissues that are relatively isotropic, whereas high tension anisotropy fluidizes the tissue. Our results reveal that epithelial tissue flows in developing embryos involve the coordinated actomyosin-dependent regulation of the mechanical properties of tissues and the tensions driving them to flow in order to achieve rapid tissue remodeling.
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Affiliation(s)
| | - Christian Cupo
- Department of Mechanical Engineering, Columbia University, New York, New York, 10027, USA
| | - Cole Allan
- Department of Mechanical Engineering, Columbia University, New York, New York, 10027, USA
| | - Alicia B Dagle
- Department of Mechanical Engineering, Columbia University, New York, New York, 10027, USA
| | - Karen E Kasza
- Department of Mechanical Engineering, Columbia University, New York, New York, 10027, USA
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5
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Hartmann J, Mayor R. Self-organized collective cell behaviors as design principles for synthetic developmental biology. Semin Cell Dev Biol 2023; 141:63-73. [PMID: 35450765 DOI: 10.1016/j.semcdb.2022.04.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2022] [Accepted: 04/12/2022] [Indexed: 10/18/2022]
Abstract
Over the past two decades, molecular cell biology has graduated from a mostly analytic science to one with substantial synthetic capability. This success is built on a deep understanding of the structure and function of biomolecules and molecular mechanisms. For synthetic biology to achieve similar success at the scale of tissues and organs, an equally deep understanding of the principles of development is required. Here, we review some of the central concepts and recent progress in tissue patterning, morphogenesis and collective cell migration and discuss their value for synthetic developmental biology, emphasizing in particular the power of (guided) self-organization and the role of theoretical advances in making developmental insights applicable in synthesis.
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Affiliation(s)
- Jonas Hartmann
- Department of Cell and Developmental Biology, University College London, Gower Street, London WC1E 6BT, UK.
| | - Roberto Mayor
- Department of Cell and Developmental Biology, University College London, Gower Street, London WC1E 6BT, UK.
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6
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Li R, Moazzeni S, Liu L, Lin H. Micro and Macroscopic Stress-Strain Relations in Disordered Tessellated Networks. PHYSICAL REVIEW LETTERS 2023; 130:188201. [PMID: 37204891 PMCID: PMC10586522 DOI: 10.1103/physrevlett.130.188201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Accepted: 03/03/2023] [Indexed: 05/21/2023]
Abstract
We demonstrate that for a rigid and incompressible network in mechanical equilibrium, the microscopic stress and strain follows a simple relation, σ=pE, where σ is the deviatoric stress, E is a mean-field strain tensor, and p is the hydrostatic pressure. This relationship arises as the natural consequence of energy minimization or equivalently, mechanical equilibration. The result suggests not only that the microscopic stress and strain are aligned in the principal directions, but also microscopic deformations are predominantly affine. The relationship holds true regardless of the different (foam or tissue) energy model considered, and directly leads to a simple prediction for the shear modulus, μ=⟨p⟩/2, where ⟨p⟩ is the mean pressure of the tessellation, for general randomized lattices.
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Affiliation(s)
- Ran Li
- Department of Mechanical and Aerospace Engineering, Rutgers, The State University of New Jersey, 98 Brett Road, Piscataway, New Jersey 08854, USA
| | - Seyedsajad Moazzeni
- Department of Mechanical and Aerospace Engineering, Rutgers, The State University of New Jersey, 98 Brett Road, Piscataway, New Jersey 08854, USA
| | - Liping Liu
- Department of Mechanical and Aerospace Engineering, Rutgers, The State University of New Jersey, 98 Brett Road, Piscataway, New Jersey 08854, USA
- Department of Mathematics, Rutgers, The State University of New Jersey, 110 Frelinghuysen Road, Piscataway, New Jersey 08854, USA
| | - Hao Lin
- Department of Mechanical and Aerospace Engineering, Rutgers, The State University of New Jersey, 98 Brett Road, Piscataway, New Jersey 08854, USA
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7
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Bocanegra-Moreno L, Singh A, Hannezo E, Zagorski M, Kicheva A. Cell cycle dynamics control fluidity of the developing mouse neuroepithelium. NATURE PHYSICS 2023; 19:1050-1058. [PMID: 37456593 PMCID: PMC10344780 DOI: 10.1038/s41567-023-01977-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Accepted: 02/01/2023] [Indexed: 07/18/2023]
Abstract
As developing tissues grow in size and undergo morphogenetic changes, their material properties may be altered. Such changes result from tension dynamics at cell contacts or cellular jamming. Yet, in many cases, the cellular mechanisms controlling the physical state of growing tissues are unclear. We found that at early developmental stages, the epithelium in the developing mouse spinal cord maintains both high junctional tension and high fluidity. This is achieved via a mechanism in which interkinetic nuclear movements generate cell area dynamics that drive extensive cell rearrangements. Over time, the cell proliferation rate declines, effectively solidifying the tissue. Thus, unlike well-studied jamming transitions, the solidification uncovered here resembles a glass transition that depends on the dynamical stresses generated by proliferation and differentiation. Our finding that the fluidity of developing epithelia is linked to interkinetic nuclear movements and the dynamics of growth is likely to be relevant to multiple developing tissues.
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Affiliation(s)
| | - Amrita Singh
- Institute of Science and Technology Austria, Klosterneuburg, Austria
| | - Edouard Hannezo
- Institute of Science and Technology Austria, Klosterneuburg, Austria
| | - Marcin Zagorski
- Institute of Theoretical Physics and Mark Kac Center for Complex Systems Research, Jagiellonian University, Krakow, Poland
| | - Anna Kicheva
- Institute of Science and Technology Austria, Klosterneuburg, Austria
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8
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Lou Y, Rupprecht JF, Theis S, Hiraiwa T, Saunders TE. Curvature-Induced Cell Rearrangements in Biological Tissues. PHYSICAL REVIEW LETTERS 2023; 130:108401. [PMID: 36962052 DOI: 10.1103/physrevlett.130.108401] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Accepted: 01/13/2023] [Indexed: 06/18/2023]
Abstract
On a curved surface, epithelial cells can adapt to geometric constraints by tilting and by exchanging their neighbors from apical to basal sides, known as an apico-basal topological transition 1 (AB-T1). The relationship between cell tilt, AB-T1s, and tissue curvature still lacks a unified understanding. Here, we propose a general framework for cell packing in curved environments and explain the formation of AB-T1s from the perspective of strain anisotropy. We find that steep curvature gradients can lead to cell tilting and induce AB-T1s. Alternatively, pressure differences across the epithelial tissue can drive AB-T1s in regions of large curvature anisotropy. The two mechanisms compete to determine the impact of tissue geometry and mechanics on optimized cell rearrangements in three dimensions.
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Affiliation(s)
- Yuting Lou
- Mechanobiology Institute, National University of Singapore, Singapore 117411, Singapore
| | - Jean-Francois Rupprecht
- Mechanobiology Institute, National University of Singapore, Singapore 117411, Singapore
- Aix Marseille Univ, Université de Toulon, CNRS, CPT (UMR 7332), Turing Centre for Living systems, Marseille, France
| | - Sophie Theis
- Division of Biomedical Sciences, Warwick Medical School, University of Warwick, Coventry, CV4 7AL, United Kingdom
| | - Tetsuya Hiraiwa
- Mechanobiology Institute, National University of Singapore, Singapore 117411, Singapore
| | - Timothy E Saunders
- Mechanobiology Institute, National University of Singapore, Singapore 117411, Singapore
- Division of Biomedical Sciences, Warwick Medical School, University of Warwick, Coventry, CV4 7AL, United Kingdom
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9
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Matsuda M, Rozman J, Ostvar S, Kasza KE, Sokol SY. Mechanical control of neural plate folding by apical domain alteration. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.02.10.528047. [PMID: 36798359 PMCID: PMC9934705 DOI: 10.1101/2023.02.10.528047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/13/2023]
Abstract
Vertebrate neural tube closure is associated with complex changes in cell shape and behavior, however, the relative contribution of these processes to tissue folding is not well understood. In this study, we evaluated morphology of the superficial cell layer in the Xenopus neural plate. At the stages corresponding to the onset of tissue folding, we observed the alternation of cells with apically constricting and apically expanding apical domains. The cells had a biased orientation along the anteroposterior (AP) axis. This apical domain heterogeneity required planar cell polarity (PCP) signaling and was especially pronounced at neural plate hinges. Vertex model simulations suggested that spatially dispersed isotropically constricting cells cause the elongation of their non-constricting counterparts along the AP axis. Consistent with this hypothesis, cell-autonomous induction of apical constriction in Xenopus ectoderm cells was accompanied by the expansion of adjacent non-constricting cells. Our observations indicate that a subset of isotropically constricting cells can initiate neural plate bending, whereas a 'tug-of-war' contest between the force-generating and responding cells reduces its shrinking along the AP axis. This mechanism is an alternative to anisotropic shrinking of cell junctions that are perpendicular to the body axis. We propose that neural folding relies on PCP-dependent transduction of mechanical signals between neuroepithelial cells.
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10
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Reddy GA, Katira P. Differences in cell death and division rules can alter tissue rigidity and fluidization. SOFT MATTER 2022; 18:3713-3724. [PMID: 35502875 DOI: 10.1039/d2sm00174h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Tissue mechanical properties such as rigidity and fluidity, and changes in these properties driven by jamming-unjamming transitions (UJT), have come under recent highlight as mechanical markers of health and disease in various biological processes including cancer. However, most analyses of these mechanical properties and UJT have sidestepped the effect of cellular death and division in these systems. Cellular apoptosis (programmed cell death) and mitosis (cell division) can drive significant changes in tissue properties. The balance between the two is crucial in maintaining tissue function, and an imbalance between the two is seen in situations such as cancer progression, wound healing and necrosis. In this work we investigate the impact of cell death and division on tissue mechanical properties, by incorporating specific mechanosensitive triggers of cell death and division based on the size and geometry of the cell within in silico models of tissue dynamics. Specifically, we look at cell migration, tissue response to external stress, tissue extrusion propensity and self-organization of different cell types within the tissue, as a function of cell death and division and the rules that trigger these events. We find that not only do cell death and division events significantly alter tissue mechanics when compared to systems without these events, but that the choice of triggers driving these cell death and division events also alters the predicted tissue mechanics and overall system behavior.
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Affiliation(s)
- Gudur Ashrith Reddy
- Mechanical Engineering Department, San Diego State University, San Diego, CA, USA.
- Department of Bioengineering, University of California - San Diego, San Diego, CA, USA
| | - Parag Katira
- Mechanical Engineering Department, San Diego State University, San Diego, CA, USA.
- Computational Science Research Center, San Diego State University, San Diego, CA, USA
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11
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Kai Y. Mechanical regulation of tissues that reproduces wrinkle patterns of gastrointestinal tracts. Phys Biol 2022; 19. [PMID: 35320785 DOI: 10.1088/1478-3975/ac6042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Accepted: 03/23/2022] [Indexed: 11/12/2022]
Abstract
Gastrointestinal tracts exhibit a number of surface morphologies including zigzags, labyrinths, protrusions, and invaginations which are associated with digestive functions and are suggested to be formed by mechanical mechanisms. In this study, we investigate loading conditions and mechanical properties of tissues that reproduce different wrinkle patterning of gastrointestinal tracts on cell culture platforms. Numerical simulations of wrinkling dynamics are performed for a layered model consisting of an anisotropic epithelial layer resting on a bimodular soft substrate, which in turn adheres to a rigid foundation. Motivated by the patterning of intestinal villi of chicks and mice, we examine two-step compression, where the epithelial layer is subjected to uniaxial compression followed by biaxial compression, and one-step compression, where the epithelial layer is compressed in biaxial directions. Under different mechanical conditions of tissues, a wide variety of surface patterns are displayed that reproduce luminal patterns of digestive tracts. These results suggest possible conditions for mechanical regulation of tissues to duplicate gastrointestinal surface patterns in vitro and provide insight into mechanistic understandings of biological tissues.
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Affiliation(s)
- Yuto Kai
- Kyushu Daigaku Igakubu Daigakuin Igakukei Gakufu, 3-1-1 Maidashi, Higashi-ku, Fukuoka, 812-8582, JAPAN
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12
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Salbaum KA, Shelton ER, Serwane F. Retina organoids: Window into the biophysics of neuronal systems. BIOPHYSICS REVIEWS 2022; 3:011302. [PMID: 38505227 PMCID: PMC10903499 DOI: 10.1063/5.0077014] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Accepted: 12/16/2021] [Indexed: 03/21/2024]
Abstract
With a kind of magnetism, the human retina draws the eye of neuroscientist and physicist alike. It is attractive as a self-organizing system, which forms as a part of the central nervous system via biochemical and mechanical cues. The retina is also intriguing as an electro-optical device, converting photons into voltages to perform on-the-fly filtering before the signals are sent to our brain. Here, we consider how the advent of stem cell derived in vitro analogs of the retina, termed retina organoids, opens up an exploration of the interplay between optics, electrics, and mechanics in a complex neuronal network, all in a Petri dish. This review presents state-of-the-art retina organoid protocols by emphasizing links to the biochemical and mechanical signals of in vivo retinogenesis. Electrophysiological recording of active signal processing becomes possible as retina organoids generate light sensitive and synaptically connected photoreceptors. Experimental biophysical tools provide data to steer the development of mathematical models operating at different levels of coarse-graining. In concert, they provide a means to study how mechanical factors guide retina self-assembly. In turn, this understanding informs the engineering of mechanical signals required to tailor the growth of neuronal network morphology. Tackling the complex developmental and computational processes in the retina requires an interdisciplinary endeavor combining experiment and theory, physics, and biology. The reward is enticing: in the next few years, retina organoids could offer a glimpse inside the machinery of simultaneous cellular self-assembly and signal processing, all in an in vitro setting.
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Affiliation(s)
| | - Elijah R. Shelton
- Faculty of Physics and Center for NanoScience, Ludwig-Maximilians-Universität München, Munich, Germany
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13
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Abstract
Biological systems display a rich phenomenology of states that resemble the physical states of matter - solid, liquid and gas. These phases result from the interactions between the microscopic constituent components - the cells - that manifest in macroscopic properties such as fluidity, rigidity and resistance to changes in shape and volume. Looked at from such a perspective, phase transitions from a rigid to a flowing state or vice versa define much of what happens in many biological processes especially during early development and diseases such as cancer. Additionally, collectively moving confluent cells can also lead to kinematic phase transitions in biological systems similar to multi-particle systems where the particles can interact and show sub-populations characterised by specific velocities. In this Perspective we discuss the similarities and limitations of the analogy between biological and inert physical systems both from theoretical perspective as well as experimental evidence in biological systems. In understanding such transitions, it is crucial to acknowledge that the macroscopic properties of biological materials and their modifications result from the complex interplay between the microscopic properties of cells including growth or death, neighbour interactions and secretion of matrix, phenomena unique to biological systems. Detecting phase transitions in vivo is technically difficult. We present emerging approaches that address this challenge and may guide our understanding of the organization and macroscopic behaviour of biological tissues.
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Affiliation(s)
- Pierre-François Lenne
- Aix Marseille Univ, CNRS, UMR 7288, IBDM, Turing Center for Living Systems, Marseille, France.
| | - Vikas Trivedi
- European Molecular Biology Laboratory (EMBL), Barcelona, 08003, Spain.
- EMBL Heidelberg, Developmental Biology Unit, Heidelberg, 69117, Germany.
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14
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Atia L, Fredberg JJ, Gov NS, Pegoraro AF. Are cell jamming and unjamming essential in tissue development? Cells Dev 2021; 168:203727. [PMID: 34363993 PMCID: PMC8935248 DOI: 10.1016/j.cdev.2021.203727] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Revised: 07/07/2021] [Accepted: 07/28/2021] [Indexed: 11/25/2022]
Abstract
The last decade has seen a surge of evidence supporting the existence of the transition of the multicellular tissue from a collective material phase that is regarded as being jammed to a collective material phase that is regarded as being unjammed. The jammed phase is solid-like and effectively 'frozen', and therefore is associated with tissue homeostasis, rigidity, and mechanical stability. The unjammed phase, by contrast, is fluid-like and effectively 'melted', and therefore is associated with mechanical fluidity, plasticity and malleability that are required in dynamic multicellular processes that sculpt organ microstructure. Such multicellular sculpturing, for example, occurs during embryogenesis, growth and remodeling. Although unjamming and jamming events in the multicellular collective are reminiscent of those that occur in the inert granular collective, such as grain in a hopper that can flow or clog, the analogy is instructive but limited, and the implications for cell biology remain unclear. Here we ask, are the cellular jamming transition and its inverse --the unjamming transition-- mere epiphenomena? That is, are they dispensable downstream events that accompany but neither cause nor quench these core multicellular processes? Drawing from selected examples in developmental biology, here we suggest the hypothesis that, to the contrary, the graded departure from a jammed phase enables controlled degrees of malleability as might be required in developmental dynamics. We further suggest that the coordinated approach to a jammed phase progressively slows those dynamics and ultimately enables long-term mechanical stability as might be required in the mature homeostatic multicellular tissue.
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Affiliation(s)
- Lior Atia
- Department of Mechanical Engineering, Ben Gurion University, Beer-Sheva, Israel
| | - Jeffrey J Fredberg
- Department of Environmental Health, Harvard T.H. Chan School of Public Health, Boston, MA, USA.
| | - Nir S Gov
- Department of Chemical and Biological Physics, Weizmann Institute, Israel
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15
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Duclut C, Paijmans J, Inamdar MM, Modes CD, Jülicher F. Nonlinear rheology of cellular networks. Cells Dev 2021; 168:203746. [PMID: 34592496 DOI: 10.1016/j.cdev.2021.203746] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Revised: 06/19/2021] [Accepted: 09/13/2021] [Indexed: 12/17/2022]
Abstract
Morphogenesis depends crucially on the complex rheological properties of cell tissues and on their ability to maintain mechanical integrity while rearranging at long times. In this paper, we study the rheology of polygonal cellular networks described by a vertex model in the presence of fluctuations. We use a triangulation method to decompose shear into cell shape changes and cell rearrangements. Considering the steady-state stress under constant shear, we observe nonlinear shear-thinning behavior at all magnitudes of the fluctuations, and an even stronger nonlinear regime at lower values of the fluctuations. We successfully capture this nonlinear rheology by a mean-field model that describes the tissue in terms of cell elongation and cell rearrangements. We furthermore introduce anisotropic active stresses in the vertex model and analyze their effect on rheology. We include this anisotropy in the mean-field model and show that it recapitulates the behavior observed in the simulations. Our work clarifies how tissue rheology is related to stochastic cell rearrangements and provides a simple biophysical model to describe biological tissues. Further, it highlights the importance of nonlinearities when discussing tissue mechanics.
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Affiliation(s)
- Charlie Duclut
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Str. 8, 01187 Dresden, Germany
| | - Joris Paijmans
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Str. 8, 01187 Dresden, Germany
| | - Mandar M Inamdar
- Department of Civil Engineering, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - Carl D Modes
- Max Planck Institute for Molecular Cell Biology and Genetics (MPI-CBG), Dresden 01307, Germany; Center for Systems Biology Dresden, Pfotenhauerstrasse 108, 01307 Dresden, Germany; Cluster of Excellence, Physics of Life, TU Dresden, Dresden 01307, Germany
| | - Frank Jülicher
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Str. 8, 01187 Dresden, Germany; Center for Systems Biology Dresden, Pfotenhauerstrasse 108, 01307 Dresden, Germany; Cluster of Excellence, Physics of Life, TU Dresden, Dresden 01307, Germany.
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16
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Pasupalak A, Samidurai SK, Li Y, Zheng Y, Ni R, Ciamarra MP. Unconventional rheological properties in systems of deformable particles. SOFT MATTER 2021; 17:7708-7713. [PMID: 34351349 DOI: 10.1039/d1sm00936b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
We demonstrate the existence of unconventional rheological and memory properties in systems of soft-deformable particles whose energy depends on their shape, via numerical simulations. At large strains, these systems experience an unconventional shear weakening transition characterized by an increase in the mechanical energy and a drastic drop in shear stress, which stems from the emergence of short-ranged tetratic order. In these weakened states, the contact network evolves reversibly under strain reversal, keeping memory of its initial state, while the microscopic dynamics is irreversible.
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Affiliation(s)
- Anshuman Pasupalak
- Division of Physics and Applied Physics, School of Physical and Mathematical Science, Nanyang Technological University, Singapore.
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17
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Rozman J, Krajnc M, Ziherl P. Morphologies of compressed active epithelial monolayers. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2021; 44:99. [PMID: 34287727 DOI: 10.1140/epje/s10189-021-00094-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Accepted: 06/21/2021] [Indexed: 06/13/2023]
Abstract
Using a three-dimensional active vertex model, we numerically study the shapes of strained unsupported epithelial monolayers subject to active junctional noise due to stochastic binding and unbinding of myosin. We find that while uniaxial, biaxial, and isotropic in-plane compressive strains do lead to the formation of longitudinal, herringbone pattern, and labyrinthine folds, respectively, the villus morphology characteristic of, e.g., the small intestine appears only if junctional tension fluctuations are strong enough to fluidize the tissue. Moreover, the fluidized epithelium features villi even in the absence of compressive strain provided that the apico-basal differential surface tension is large enough. We analyze several details of the different epithelial forms including the role of strain rate and the modulation of tissue thickness across folds. Our results show that even unsupported, non-patterned epithelia can form nontrivial morphologies.
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Affiliation(s)
- Jan Rozman
- Jožef Stefan Institute, Jamova 39, 1000, Ljubljana, Slovenia.
- Faculty of Mathematics and Physics, University of Ljubljana, Jadranska 19, 1000, Ljubljana, Slovenia.
| | - Matej Krajnc
- Jožef Stefan Institute, Jamova 39, 1000, Ljubljana, Slovenia
| | - Primož Ziherl
- Jožef Stefan Institute, Jamova 39, 1000, Ljubljana, Slovenia
- Faculty of Mathematics and Physics, University of Ljubljana, Jadranska 19, 1000, Ljubljana, Slovenia
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18
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Dias Gomes M, Iden S. Orchestration of tissue-scale mechanics and fate decisions by polarity signalling. EMBO J 2021; 40:e106787. [PMID: 33998017 PMCID: PMC8204866 DOI: 10.15252/embj.2020106787] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Revised: 03/10/2021] [Accepted: 03/12/2021] [Indexed: 02/06/2023] Open
Abstract
Eukaryotic development relies on dynamic cell shape changes and segregation of fate determinants to achieve coordinated compartmentalization at larger scale. Studies in invertebrates have identified polarity programmes essential for morphogenesis; however, less is known about their contribution to adult tissue maintenance. While polarity-dependent fate decisions in mammals utilize molecular machineries similar to invertebrates, the hierarchies and effectors can differ widely. Recent studies in epithelial systems disclosed an intriguing interplay of polarity proteins, adhesion molecules and mechanochemical pathways in tissue organization. Based on major advances in biophysics, genome editing, high-resolution imaging and mathematical modelling, the cell polarity field has evolved to a remarkably multidisciplinary ground. Here, we review emerging concepts how polarity and cell fate are coupled, with emphasis on tissue-scale mechanisms, mechanobiology and mammalian models. Recent findings on the role of polarity signalling for tissue mechanics, micro-environmental functions and fate choices in health and disease will be summarized.
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Affiliation(s)
- Martim Dias Gomes
- CECAD Cluster of ExcellenceUniversity of CologneCologneGermany
- Cell and Developmental BiologyFaculty of MedicineCenter of Human and Molecular Biology (ZHMB)Saarland UniversityHomburgGermany
| | - Sandra Iden
- CECAD Cluster of ExcellenceUniversity of CologneCologneGermany
- Cell and Developmental BiologyFaculty of MedicineCenter of Human and Molecular Biology (ZHMB)Saarland UniversityHomburgGermany
- CMMCUniversity of CologneCologneGermany
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19
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Sadhukhan S, Nandi SK. Theory and simulation for equilibrium glassy dynamics in cellular Potts model of confluent biological tissue. Phys Rev E 2021; 103:062403. [PMID: 34271700 DOI: 10.1103/physreve.103.062403] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Accepted: 05/14/2021] [Indexed: 01/23/2023]
Abstract
Glassy dynamics in a confluent monolayer is indispensable in morphogenesis, wound healing, bronchial asthma, and many others; a detailed theoretical framework for such a system is, therefore, important. Vertex-model (VM) simulations have provided crucial insights into the dynamics of such systems, but their nonequilibrium nature makes theoretical development difficult. The cellular Potts model (CPM) of confluent monolayers provides an alternative model for such systems with a well-defined equilibrium limit. We combine numerical simulations of the CPM and an analytical study based on one of the most successful theories of equilibrium glass, the random first-order transition theory, and develop a comprehensive theoretical framework for a confluent glassy system. We find that the glassy dynamics within the CPM is qualitatively similar to that in the VM. Our study elucidates the crucial role of geometric constraints in bringing about two distinct regimes in the dynamics, as the target perimeter P_{0} is varied. The unusual sub-Arrhenius relaxation results from the distinctive interaction potential arising from the perimeter constraint in such systems. The fragility of the system decreases with increasing P_{0} in the low-P_{0} regime, whereas the dynamics is independent of P_{0} in the other regime. The rigidity transition, found in the VM, is absent within the CPM; this difference seems to come from the nonequilibrium nature of the former. We show that the CPM captures the basic phenomenology of glassy dynamics in a confluent biological system via comparison of our numerical results with existing experiments on different systems.
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Affiliation(s)
- Souvik Sadhukhan
- TIFR Centre for Interdisciplinary Sciences, Tata Institute of Fundamental Research, Hyderabad 500046, India
| | - Saroj Kumar Nandi
- TIFR Centre for Interdisciplinary Sciences, Tata Institute of Fundamental Research, Hyderabad 500046, India
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20
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Petridou NI, Corominas-Murtra B, Heisenberg CP, Hannezo E. Rigidity percolation uncovers a structural basis for embryonic tissue phase transitions. Cell 2021; 184:1914-1928.e19. [PMID: 33730596 PMCID: PMC8055543 DOI: 10.1016/j.cell.2021.02.017] [Citation(s) in RCA: 64] [Impact Index Per Article: 21.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Revised: 12/09/2020] [Accepted: 02/04/2021] [Indexed: 12/15/2022]
Abstract
Embryo morphogenesis is impacted by dynamic changes in tissue material properties, which have been proposed to occur via processes akin to phase transitions (PTs). Here, we show that rigidity percolation provides a simple and robust theoretical framework to predict material/structural PTs of embryonic tissues from local cell connectivity. By using percolation theory, combined with directly monitoring dynamic changes in tissue rheology and cell contact mechanics, we demonstrate that the zebrafish blastoderm undergoes a genuine rigidity PT, brought about by a small reduction in adhesion-dependent cell connectivity below a critical value. We quantitatively predict and experimentally verify hallmarks of PTs, including power-law exponents and associated discontinuities of macroscopic observables. Finally, we show that this uniform PT depends on blastoderm cells undergoing meta-synchronous divisions causing random and, consequently, uniform changes in cell connectivity. Collectively, our theoretical and experimental findings reveal the structural basis of material PTs in an organismal context.
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Affiliation(s)
| | | | | | - Edouard Hannezo
- Institute of Science and Technology Austria, Klosterneuburg, Austria.
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21
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Zankoc C, Krajnc M. Elasticity, Stability, and Quasioscillations of Cell-Cell Junctions in Solid Confluent Epithelia. Biophys J 2020; 119:1706-1711. [PMID: 33086043 DOI: 10.1016/j.bpj.2020.09.029] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Revised: 09/04/2020] [Accepted: 09/28/2020] [Indexed: 01/22/2023] Open
Abstract
Macroscopic properties and shapes of biological tissues depend on the remodeling of cell-cell junctions at the microscopic scale. We propose a theoretical framework that couples a vertex model of solid confluent tissues with the dynamics describing generation of local force dipoles in the junctional actomyosin. Depending on the myosin turnover rate, junctions either preserve stable length or collapse to initiate cell rearrangements. We find that noise can amplify and sustain transient oscillations to the fixed point, giving rise to quasiperiodic junctional dynamics. We also discover that junctional stability is affected by cell arrangements and junctional rest tensions, which may explain junctional collapse during convergence and extension in embryos.
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22
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Poullet N, Golushko I, Lorman V, Travnickova J, Bureau C, Chalin D, Rochal S, Parmeggiani A, Kissa K. Mechanical instabilities of aorta drive blood stem cell production: a live study. Cell Mol Life Sci 2020; 77:3453-3464. [PMID: 31732791 PMCID: PMC11104984 DOI: 10.1007/s00018-019-03372-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2019] [Revised: 10/09/2019] [Accepted: 11/05/2019] [Indexed: 12/14/2022]
Abstract
During embryogenesis of all vertebrates, haematopoietic stem/progenitor cells (HSPCs) extrude from the aorta by a complex process named endothelial-to-haematopoietic transition (EHT). HSPCs will then colonize haematopoietic organs allowing haematopoiesis throughout adult life. The mechanism underlying EHT including the role of each aortic endothelial cell (EC) within the global aorta dynamics remains unknown. In the present study, we show for the first time that EHT involves the remodelling of individual cells within a collective migration of ECs which is tightly orchestrated, resulting in HSPCs extrusion in the sub-aortic space without compromising aorta integrity. By performing a cross-disciplinary study which combines high-resolution 4D imaging and theoretical analysis based on the concepts of classical mechanics, we propose that this complex developmental process is dependent on mechanical instabilities of the aorta preparing and facilitating the extrusion of HSPCs.
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Affiliation(s)
- Nausicaa Poullet
- DIMNP, CNRS, INSERM, University of Montpellier, Montpellier, France
| | - Ivan Golushko
- Laboratoire Charles Coulomb, CNRS, University of Montpellier, Montpellier, France
- Faculty of Physics, Southern Federal University, 5 Zorge Str., Rostov-on-Don, Russia
| | - Vladimir Lorman
- Laboratoire Charles Coulomb, CNRS, University of Montpellier, Montpellier, France
| | - Jana Travnickova
- DIMNP, CNRS, INSERM, University of Montpellier, Montpellier, France
| | - Charlotte Bureau
- DIMNP, CNRS, INSERM, University of Montpellier, Montpellier, France
| | - Dmitrii Chalin
- Faculty of Physics, Southern Federal University, 5 Zorge Str., Rostov-on-Don, Russia
| | - Sergei Rochal
- Faculty of Physics, Southern Federal University, 5 Zorge Str., Rostov-on-Don, Russia
| | - Andrea Parmeggiani
- DIMNP, CNRS, INSERM, University of Montpellier, Montpellier, France
- Laboratoire Charles Coulomb, CNRS, University of Montpellier, Montpellier, France
| | - Karima Kissa
- DIMNP, CNRS, INSERM, University of Montpellier, Montpellier, France.
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23
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Rozman J, Krajnc M, Ziherl P. Collective cell mechanics of epithelial shells with organoid-like morphologies. Nat Commun 2020; 11:3805. [PMID: 32732886 PMCID: PMC7393134 DOI: 10.1038/s41467-020-17535-4] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Accepted: 06/30/2020] [Indexed: 11/28/2022] Open
Abstract
The study of organoids, artificially grown cell aggregates with the functionality and small-scale anatomy of real organs, is one of the most active areas of research in biology and biophysics, yet the basic physical origins of their different morphologies remain poorly understood. Here, we propose a mechanistic theory of epithelial shells which resemble small-organoid morphologies. Using a 3D surface tension-based vertex model, we reproduce the characteristic shapes from branched and budded to invaginated structures. We find that the formation of branched morphologies relies strongly on junctional activity, enabling temporary aggregations of topological defects in cell packing. To elucidate our numerical results, we develop an effective elasticity theory, which allows one to estimate the apico-basal polarity from the tissue-scale modulation of cell height. Our work provides a generic interpretation of the observed epithelial shell morphologies, highlighting the role of physical factors such as differential surface tension, cell rearrangements, and tissue growth. The physical origins of man-made tissue morphologies with organ-like microscopic anatomy and functionality remain poorly understood. Here, authors propose a mechanistic theory of these structures, employing a 3D vertex model to reproduce the characteristic morphologies such as branched shapes.
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Affiliation(s)
- Jan Rozman
- Jožef Stefan Institute, Jamova 39, Ljubljana, 1000, Slovenia. .,Faculty of Mathematics and Physics, University of Ljubljana, Jadranska 19, Ljubljana, 1000, Slovenia.
| | - Matej Krajnc
- Jožef Stefan Institute, Jamova 39, Ljubljana, 1000, Slovenia.,Lewis-Sigler Institute for Integrative Genomics, Princeton University, Washington Road, Princeton, NJ, 08540, USA
| | - Primož Ziherl
- Jožef Stefan Institute, Jamova 39, Ljubljana, 1000, Slovenia.,Faculty of Mathematics and Physics, University of Ljubljana, Jadranska 19, Ljubljana, 1000, Slovenia
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24
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Wang X, Merkel M, Sutter LB, Erdemci-Tandogan G, Manning ML, Kasza KE. Anisotropy links cell shapes to tissue flow during convergent extension. Proc Natl Acad Sci U S A 2020; 117:13541-13551. [PMID: 32467168 PMCID: PMC7306759 DOI: 10.1073/pnas.1916418117] [Citation(s) in RCA: 67] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
Within developing embryos, tissues flow and reorganize dramatically on timescales as short as minutes. This includes epithelial tissues, which often narrow and elongate in convergent extension movements due to anisotropies in external forces or in internal cell-generated forces. However, the mechanisms that allow or prevent tissue reorganization, especially in the presence of strongly anisotropic forces, remain unclear. We study this question in the converging and extending Drosophila germband epithelium, which displays planar-polarized myosin II and experiences anisotropic forces from neighboring tissues. We show that, in contrast to isotropic tissues, cell shape alone is not sufficient to predict the onset of rapid cell rearrangement. From theoretical considerations and vertex model simulations, we predict that in anisotropic tissues, two experimentally accessible metrics of cell patterns-the cell shape index and a cell alignment index-are required to determine whether an anisotropic tissue is in a solid-like or fluid-like state. We show that changes in cell shape and alignment over time in the Drosophila germband predict the onset of rapid cell rearrangement in both wild-type and snail twist mutant embryos, where our theoretical prediction is further improved when we also account for cell packing disorder. These findings suggest that convergent extension is associated with a transition to more fluid-like tissue behavior, which may help accommodate tissue-shape changes during rapid developmental events.
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Affiliation(s)
- Xun Wang
- Department of Mechanical Engineering, Columbia University, New York, NY 10027
| | - Matthias Merkel
- Department of Physics, Syracuse University, Syracuse, NY 13244
- BioInspired Institute, Syracuse University, Syracuse, NY 13244
- Centre de Physique Théorique (CPT), Turing Center for Living Systems, Aix Marseille Univ, Université de Toulon, CNRS, 13009 Marseille, France
| | - Leo B Sutter
- Department of Physics, Syracuse University, Syracuse, NY 13244
- BioInspired Institute, Syracuse University, Syracuse, NY 13244
| | - Gonca Erdemci-Tandogan
- Department of Physics, Syracuse University, Syracuse, NY 13244
- BioInspired Institute, Syracuse University, Syracuse, NY 13244
| | - M Lisa Manning
- Department of Physics, Syracuse University, Syracuse, NY 13244
- BioInspired Institute, Syracuse University, Syracuse, NY 13244
| | - Karen E Kasza
- Department of Mechanical Engineering, Columbia University, New York, NY 10027;
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25
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Krajnc M. Solid-fluid transition and cell sorting in epithelia with junctional tension fluctuations. SOFT MATTER 2020; 16:3209-3215. [PMID: 32159536 DOI: 10.1039/c9sm02310k] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Tissues transition between solid-like and fluid-like behavior, which has major implications for morphogenesis and disease. These transitions can occur due to changes in the intrinsic shape of constituent cells and cell motility. We consider an alternative mechanism by studying tissues that explore the energy landscape through stochastic dynamics, driven by turnover of junctional molecular motors. To identify the solid-fluid transition, we start with single-component tissues and show that the mean cell-shape index uniquely describes the effective diffusion coefficient of cell movements, which becomes finite at the transition. We generalize our approach to two-component tissues, and explore cell-sorting dynamics both due to differential adhesion and due to differential degree of junctional fluctuations. We recover some known characteristic scaling relations describing the sorting kinetics, and discover some discrepancies from these relations in the case of differential-fluctuations-driven sorting. Finally, we show that differential fluctuations efficiently sort two solid-like tissues with a fluid intercompartmental boundary.
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Affiliation(s)
- Matej Krajnc
- JoŽef Stefan Institute, Jamova 39, SI-1000 Ljubljana, Slovenia. and Lewis-Sigler Institute for Integrative Genomics, Princeton University, Washington Road, Princeton, USA
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26
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Loerke D, Blankenship JT. Viscoelastic voyages - Biophysical perspectives on cell intercalation during Drosophila gastrulation. Semin Cell Dev Biol 2019; 100:212-222. [PMID: 31784092 DOI: 10.1016/j.semcdb.2019.11.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2019] [Revised: 09/11/2019] [Accepted: 11/11/2019] [Indexed: 12/18/2022]
Abstract
Developmental processes are driven by a combination of cytoplasmic, cortical, and surface-associated forces. However, teasing apart the contributions of these forces and how a viscoelastic cell responds has long been a key question in developmental biology. Recent advances in applying biophysical approaches to these questions is leading to a fundamentally new understanding of morphogenesis. In this review, we discuss how computational analysis of experimental findings and in silico modeling of Drosophila gastrulation processes has led to a deeper comprehension of the physical principles at work in the early embryo. We also summarize many of the emerging methodologies that permit biophysical analysis as well as those that provide direct and indirect measurements of force directions and magnitudes. Finally, we examine the multiple frameworks that have been used to model tissue and cellular behaviors.
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Affiliation(s)
- Dinah Loerke
- Department of Physics and Astronomy, University of Denver, Denver, CO 80208, USA.
| | - J Todd Blankenship
- Department of Biological Sciences, University of Denver, Denver, CO 80208, USA.
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27
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Cell-Size Pleomorphism Drives Aberrant Clone Dispersal in Proliferating Epithelia. Dev Cell 2019; 51:49-61.e4. [PMID: 31495693 DOI: 10.1016/j.devcel.2019.08.005] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2018] [Revised: 06/18/2019] [Accepted: 08/06/2019] [Indexed: 11/22/2022]
Abstract
As epithelial tissues develop, groups of cells related by descent tend to associate in clonal populations rather than dispersing within the cell layer. While this is frequently assumed to be a result of differential adhesion, precise mechanisms controlling clonal cohesiveness remain unknown. Here we employ computational simulations to modulate epithelial cell size in silico and show that junctions between small cells frequently collapse, resulting in clone-cell dispersal among larger neighbors. Consistent with similar dynamics in vivo, we further demonstrate that mosaic disruption of Drosophila Tor generates small cells and results in aberrant clone dispersal in developing wing disc epithelia. We propose a geometric basis for this phenomenon, supported in part by the observation that soap-foam cells exhibit similar size-dependent junctional rearrangements. Combined, these results establish a link between cell-size pleomorphism and the control of epithelial cell packing, with potential implications for understanding tumor cell dispersal in human disease.
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28
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Ladan MK, Ziherl P, Šiber A. Topology of dividing planar tilings: Mitosis and order in epithelial tissues. Phys Rev E 2019; 100:012410. [PMID: 31499823 DOI: 10.1103/physreve.100.012410] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Indexed: 06/10/2023]
Abstract
We investigate a range of rule-based models of the in-plane structure of growing single-cell-thick epithelia represented by the distribution of frequencies of polygon classes. Within the Markovian framework introduced by Gibson et al. [Nature (London) 442, 1038 (2006)10.1038/nature05014], we discuss various topologically allowed cell division schemes assumed to control the structure of the tissue as well as a phenomenological Gaussian scheme, and we compute the stationary distributions for all of them. Some of the distributions reproduce those seen in tissues characterized by unbiased mitotic events but also in certain tissues with a preferred orientation of the mitotic plane or a cell-rearrangement process such as neighbor exchange. In addition, we propose the asynchronous-division variant of the model, which builds on the Lewis law and on the Aboav-Weaire law as well as on the fact that the dividing cells are larger than the resting cells. This generalization a posteriori validates the original model.
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Affiliation(s)
- M Kokalj Ladan
- Faculty of Pharmacy, University of Ljubljana, Aškerčeva 7, SI-1000 Ljubljana, Slovenia
| | - P Ziherl
- Faculty of Mathematics and Physics, University of Ljubljana, Jadranska 19, SI-1000 Ljubljana, Slovenia
- Jožef Stefan Institute, Jamova 39, SI-1000 Ljubljana, Slovenia
| | - A Šiber
- Jožef Stefan Institute, Jamova 39, SI-1000 Ljubljana, Slovenia
- Institute of Physics, Bijenička 46, HR-10000 Zagreb, Croatia
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29
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Berthier L, Flenner E, Szamel G. Glassy dynamics in dense systems of active particles. J Chem Phys 2019; 150:200901. [DOI: 10.1063/1.5093240] [Citation(s) in RCA: 58] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Affiliation(s)
- Ludovic Berthier
- Laboratoire Charles Coulomb, UMR 5221 CNRS, Université Montpellier, Montpellier, France
| | - Elijah Flenner
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, USA
| | - Grzegorz Szamel
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, USA
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30
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Alert R, Blanch-Mercader C, Casademunt J. Active Fingering Instability in Tissue Spreading. PHYSICAL REVIEW LETTERS 2019; 122:088104. [PMID: 30932560 DOI: 10.1103/physrevlett.122.088104] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Indexed: 05/13/2023]
Abstract
During the spreading of epithelial tissues, the advancing tissue front often develops fingerlike protrusions. Their resemblance to traditional viscous fingering patterns in driven fluids suggests that epithelial fingers could arise from an interfacial instability. However, the existence and physical mechanism of such a putative instability remain unclear. Here, based on an active polar fluid model for epithelial spreading, we analytically predict a generic instability of the tissue front. On the one hand, active cellular traction forces impose a velocity gradient that leads to an accelerated front, which is, thus, unstable to long-wavelength perturbations. On the other hand, contractile intercellular stresses typically dominate over surface tension in stabilizing short-wavelength perturbations. Finally, the finite range of hydrodynamic interactions in the tissue selects a wavelength for the fingering pattern, which is, thus, given by the smallest between the tissue size and the hydrodynamic screening length. Overall, we show that spreading epithelia experience an active fingering instability based on a simple kinematic mechanism. Moreover, our results underscore the crucial role of long-range hydrodynamic interactions in the dynamics of tissue morphology.
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Affiliation(s)
- Ricard Alert
- Departament de Física de la Matèria Condensada, Universitat de Barcelona, Avinguda Diagonal 647, 08028 Barcelona, Spain
- Universitat de Barcelona Institute of Complex Systems (UBICS), Universitat de Barcelona, 08028 Barcelona, Spain
| | - Carles Blanch-Mercader
- Laboratoire Physico Chimie Curie, Institut Curie, PSL Research University, CNRS, 26 rue d'Ulm, 75005 Paris, France
- Department of Biochemistry, Faculty of Sciences, University of Geneva, 30, Quai Ernest-Ansermet, 1205 Genève, Switzerland
| | - Jaume Casademunt
- Departament de Física de la Matèria Condensada, Universitat de Barcelona, Avinguda Diagonal 647, 08028 Barcelona, Spain
- Universitat de Barcelona Institute of Complex Systems (UBICS), Universitat de Barcelona, 08028 Barcelona, Spain
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31
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Okuda S, Kuranaga E, Sato K. Apical Junctional Fluctuations Lead to Cell Flow while Maintaining Epithelial Integrity. Biophys J 2019; 116:1159-1170. [PMID: 30799073 DOI: 10.1016/j.bpj.2019.01.039] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2018] [Revised: 01/22/2019] [Accepted: 01/28/2019] [Indexed: 12/23/2022] Open
Abstract
Epithelial sheet integrity is robustly maintained during morphogenesis, which is essential to shape organs and embryos. While maintaining the planar monolayer in three-dimensional space, cells dynamically flow via rearranging their connections between each other. However, little is known about how cells maintain the plane sheet integrity in three-dimensional space and provide cell flow in the in-plane sheet. In this study, using a three-dimensional vertex model, we demonstrate that apical junctional fluctuations allow stable cell rearrangements while ensuring monolayer integrity. In addition to the fluctuations, direction-dependent contraction on the apical cell boundaries, which corresponds to forces from adherens junctions, induces cell flow in a definite direction. We compared the kinematic behaviors of this apical-force-driven cell flow with those of typical cell flow that is driven by forces generated on basal regions and revealed the characteristic differences between them. These differences can be used to distinguish the mechanism of epithelial cell flow observed in experiments, i.e., whether it is apical- or basal-force-driven. Our numerical simulations suggest that cells actively generate fluctuations and use them to regulate both epithelial integrity and plasticity during morphogenesis.
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Affiliation(s)
- Satoru Okuda
- PRESTO, Japan Science and Technology Agency, Kawaguchi, Japan; Institute for Frontier Life and Medical Sciences, Kyoto University, Kyoto, Japan.
| | - Erina Kuranaga
- Graduate School of Life Sciences, Tohoku University, Sendai, Japan
| | - Katsuhiko Sato
- Research Institute for Electronic Science, Global Institution for Collaborative Research and Education, Hokkaido University, Sapporo, Japan; Global Station for Soft Matter, Global Institution for Collaborative Research and Education, Hokkaido University, Sapporo, Japan.
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32
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Haas PA, Goldstein RE. Nonlinear and nonlocal elasticity in coarse-grained differential-tension models of epithelia. Phys Rev E 2019; 99:022411. [PMID: 30934282 PMCID: PMC7616085 DOI: 10.1103/physreve.99.022411] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2018] [Indexed: 02/02/2023]
Abstract
The shapes of epithelial tissues result from a complex interplay of contractile forces in the cytoskeleta of the cells in the tissue and adhesion forces between them. A host of discrete, cell-based models describe these forces by assigning different surface tensions to the apical, basal, and lateral sides of the cells. These differential-tension models have been used to describe the deformations of epithelia in different living systems, but the underlying continuum mechanics at the scale of the epithelium are still unclear. Here, we derive a continuum theory for a simple differential-tension model of a two-dimensional epithelial monolayer and study the buckling of this epithelium under imposed compression. The analysis reveals how the cell-level properties encoded in the differential-tension model lead to linear and nonlinear elastic as well as nonlocal, nonelastic behavior at the continuum level.
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Affiliation(s)
- Pierre A. Haas
- Department of Applied Mathematics and Theoretical Physics, Centre for Mathematical Sciences, University of Cambridge, Wilberforce Road, Cambridge CB3 0WA, United Kingdom
| | - Raymond E. Goldstein
- Department of Applied Mathematics and Theoretical Physics, Centre for Mathematical Sciences, University of Cambridge, Wilberforce Road, Cambridge CB3 0WA, United Kingdom
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Kim S, Hilgenfeldt S. A simple landscape of metastable state energies for two-dimensional cellular matter. SOFT MATTER 2019; 15:237-242. [PMID: 30543253 DOI: 10.1039/c8sm01921e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The mechanical behavior of cellular matter in two dimensions can be inferred from geometric information near its energetic ground state. Here it is shown that the much larger set of all metastable state energies is universally described by a systematic expansion in moments of the joint probability distribution of size (area) and topology (number of neighbors). The approach captures bounds to the entire range of metastable state energies and quantitatively identifies any such state. The resulting energy landscape is invariant across different classes of energy functionals, across simulation techniques, and across system polydispersities. The theory also finds a threshold in tissue adhesion beyond which no metastable states are possible. Mechanical properties of cellular matter in biological and technological applications can thus be identified by visual information only.
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Affiliation(s)
- Sangwoo Kim
- Mechanical Science and Engineering, University of Illinois, Urbana-Champaign, USA.
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Syncytial germline architecture is actively maintained by contraction of an internal actomyosin corset. Nat Commun 2018; 9:4694. [PMID: 30410005 PMCID: PMC6224597 DOI: 10.1038/s41467-018-07149-2] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2018] [Accepted: 10/09/2018] [Indexed: 01/13/2023] Open
Abstract
Syncytial architecture is an evolutionarily-conserved feature of the germline of many species and plays a crucial role in their fertility. However, the mechanism supporting syncytial organization is largely unknown. Here, we identify a corset-like actomyosin structure within the syncytial germline of Caenorhabditis elegans, surrounding the common rachis. Using laser microsurgery, we demonstrate that actomyosin contractility within this structure generates tension both in the plane of the rachis surface and perpendicular to it, opposing membrane tension. Genetic and pharmacological perturbations, as well as mathematical modeling, reveal a balance of forces within the gonad and show how changing the tension within the actomyosin corset impinges on syncytial germline structure, leading, in extreme cases, to sterility. Thus, our work highlights a unique tissue-level cytoskeletal structure, and explains the critical role of actomyosin contractility in the preservation of a functional germline. Germline cells in many species are fused to form a syncytium but the mechanics behind the maintenance of these structures are poorly defined. Here, the authors propose an inner contractile actomyosin corset provides a supportive framework to maintain germline architecture in C. elegans.
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