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Sharma S, Ganotra J, Samantaray J, Sahoo RK, Bhardwaj D, Tuteja N. An emerging role of heterotrimeric G-proteins in nodulation and nitrogen sensing. PLANTA 2023; 258:101. [PMID: 37847414 DOI: 10.1007/s00425-023-04251-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 09/25/2023] [Indexed: 10/18/2023]
Abstract
MAIN CONCLUSION A comprehensive understanding of nitrogen signaling cascades involving heterotrimeric G-proteins and their putative receptors can assist in the production of nitrogen-efficient plants. Plants are immobile in nature, so they must endure abiotic stresses including nutrient stress. Plant development and agricultural productivity are frequently constrained by the restricted availability of nitrogen in the soil. Non-legume plants acquire nitrogen from the soil through root membrane-bound transporters. In depleted soil nitrogen conditions, legumes are naturally conditioned to fix atmospheric nitrogen with the aid of nodulation elicited by nitrogen-fixing bacteria. Moreover, apart from the symbiotic nitrogen fixation process, nitrogen uptake from the soil can also be a significant secondary source to satisfy the nitrogen requirements of legumes. Heterotrimeric G-proteins function as molecular switches to help plant cells relay diverse stimuli emanating from external stress conditions. They are comprised of Gα, Gβ and Gγ subunits, which cooperate with several downstream effectors to regulate multiple plant signaling events. In the present review, we concentrate on signaling mechanisms that regulate plant nitrogen nutrition. Our review highlights the potential of heterotrimeric G-proteins, together with their putative receptors, to assist the legume root nodule symbiosis (RNS) cascade, particularly during calcium spiking and nodulation. Additionally, the functions of heterotrimeric G-proteins in nitrogen acquisition by plant roots as well as in improving nitrogen use efficiency (NUE) have also been discussed. Future research oriented towards heterotrimeric G-proteins through genome editing tools can be a game changer in the enhancement of the nitrogen fixation process. This will foster the precise manipulation and production of plants to ensure global food security in an era of climate change by enhancing crop productivity and minimizing reliance on external inputs.
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Affiliation(s)
- Suvriti Sharma
- Department of Botany, Central University of Jammu, Jammu, Jammu and Kashmir, 181143, India
| | - Jahanvi Ganotra
- Department of Botany, Central University of Jammu, Jammu, Jammu and Kashmir, 181143, India
| | - Jyotipriya Samantaray
- Department of Botany, Central University of Jammu, Jammu, Jammu and Kashmir, 181143, India
| | - Ranjan Kumar Sahoo
- Department of Biotechnology, Centurion University of Technology and Management, Bhubaneswar, Odisha, 752050, India
| | - Deepak Bhardwaj
- Department of Botany, Central University of Jammu, Jammu, Jammu and Kashmir, 181143, India.
| | - Narendra Tuteja
- Plant Molecular Biology Group, International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi, 110067, India.
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Allan C, Tayagui A, Hornung R, Nock V, Meisrimler CN. A dual-flow RootChip enables quantification of bi-directional calcium signaling in primary roots. FRONTIERS IN PLANT SCIENCE 2023; 13:1040117. [PMID: 36704158 PMCID: PMC9871814 DOI: 10.3389/fpls.2022.1040117] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Accepted: 12/13/2022] [Indexed: 06/18/2023]
Abstract
One sentence summary: Bi-directional-dual-flow-RootChip to track calcium signatures in Arabidopsis primary roots responding to osmotic stress. Plant growth and survival is fundamentally linked with the ability to detect and respond to abiotic and biotic factors. Cytosolic free calcium (Ca2+) is a key messenger in signal transduction pathways associated with a variety of stresses, including mechanical, osmotic stress and the plants' innate immune system. These stresses trigger an increase in cytosolic Ca2+ and thus initiate a signal transduction cascade, contributing to plant stress adaptation. Here we combine fluorescent G-CaMP3 Arabidopsis thaliana sensor lines to visualise Ca2+ signals in the primary root of 9-day old plants with an optimised dual-flow RootChip (dfRC). The enhanced polydimethylsiloxane (PDMS) bi-directional-dual-flow-RootChip (bi-dfRC) reported here adds two adjacent inlet channels at the base of the observation chamber, allowing independent or asymmetric chemical stimulation at either the root differentiation zone or tip. Observations confirm distinct early spatio-temporal patterns of salinity (sodium chloride, NaCl) and drought (polyethylene glycol, PEG)-induced Ca2+ signals throughout different cell types dependent on the first contact site. Furthermore, we show that the primary signal always dissociates away from initially stimulated cells. The observed early signaling events induced by NaCl and PEG are surprisingly complex and differ from long-term changes in cytosolic Ca2+ reported in roots. Bi-dfRC microfluidic devices will provide a novel approach to challenge plant roots with different conditions simultaneously, while observing bi-directionality of signals. Future applications include combining the bi-dfRC with H2O2 and redox sensor lines to test root systemic signaling responses to biotic and abiotic factors.
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Affiliation(s)
- Claudia Allan
- School of Biological Sciences, University of Canterbury, Christchurch, New Zealand
| | - Ayelen Tayagui
- School of Biological Sciences, University of Canterbury, Christchurch, New Zealand
- Department of Electrical and Computer Engineering, University of Canterbury, Christchurch, New Zealand
- MacDiarmid Institute for Advanced Materials and Nanotechnology, Wellington, New Zealand
| | | | - Volker Nock
- Department of Electrical and Computer Engineering, University of Canterbury, Christchurch, New Zealand
- MacDiarmid Institute for Advanced Materials and Nanotechnology, Wellington, New Zealand
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3
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Allan C, Morris RJ, Meisrimler CN. Encoding, transmission, decoding, and specificity of calcium signals in plants. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:3372-3385. [PMID: 35298633 PMCID: PMC9162177 DOI: 10.1093/jxb/erac105] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Accepted: 03/10/2022] [Indexed: 06/14/2023]
Abstract
Calcium acts as a signal and transmits information in all eukaryotes. Encoding machinery consisting of calcium channels, stores, buffers, and pumps can generate a variety of calcium transients in response to external stimuli, thus shaping the calcium signature. Mechanisms for the transmission of calcium signals have been described, and a large repertoire of calcium binding proteins exist that can decode calcium signatures into specific responses. Whilst straightforward as a concept, mysteries remain as to exactly how such information processing is biochemically implemented. Novel developments in imaging technology and genetically encoded sensors (such as calcium indicators), in particular for multi-signal detection, are delivering exciting new insights into intra- and intercellular calcium signaling. Here, we review recent advances in characterizing the encoding, transmission, and decoding mechanisms, with a focus on long-distance calcium signaling. We present technological advances and computational frameworks for studying the specificity of calcium signaling, highlight current gaps in our understanding and propose techniques and approaches for unravelling the underlying mechanisms.
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Affiliation(s)
- Claudia Allan
- University of Canterbury, School of Biological Science, Christchurch, New Zealand
| | - Richard J Morris
- Computational and Systems Biology, John Innes Centre, Norwich, UK
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4
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Wang D, Dong W, Murray J, Wang E. Innovation and appropriation in mycorrhizal and rhizobial Symbioses. THE PLANT CELL 2022; 34:1573-1599. [PMID: 35157080 PMCID: PMC9048890 DOI: 10.1093/plcell/koac039] [Citation(s) in RCA: 42] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Accepted: 01/21/2022] [Indexed: 05/20/2023]
Abstract
Most land plants benefit from endosymbiotic interactions with mycorrhizal fungi, including legumes and some nonlegumes that also interact with endosymbiotic nitrogen (N)-fixing bacteria to form nodules. In addition to these helpful interactions, plants are continuously exposed to would-be pathogenic microbes: discriminating between friends and foes is a major determinant of plant survival. Recent breakthroughs have revealed how some key signals from pathogens and symbionts are distinguished. Once this checkpoint has been passed and a compatible symbiont is recognized, the plant coordinates the sequential development of two types of specialized structures in the host. The first serves to mediate infection, and the second, which appears later, serves as sophisticated intracellular nutrient exchange interfaces. The overlap in both the signaling pathways and downstream infection components of these symbioses reflects their evolutionary relatedness and the common requirements of these two interactions. However, the different outputs of the symbioses, phosphate uptake versus N fixation, require fundamentally different components and physical environments and necessitated the recruitment of different master regulators, NODULE INCEPTION-LIKE PROTEINS, and PHOSPHATE STARVATION RESPONSES, for nodulation and mycorrhization, respectively.
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Affiliation(s)
- Dapeng Wang
- National Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Wentao Dong
- National Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | | | - Ertao Wang
- Authors for correspondence: (E.W) and (J.M.)
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5
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Resentini F, Ruberti C, Grenzi M, Bonza MC, Costa A. The signatures of organellar calcium. PLANT PHYSIOLOGY 2021; 187:1985-2004. [PMID: 33905517 PMCID: PMC8644629 DOI: 10.1093/plphys/kiab189] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Accepted: 04/10/2021] [Indexed: 05/23/2023]
Abstract
Recent insights about the transport mechanisms involved in the in and out of calcium ions in plant organelles, and their role in the regulation of cytosolic calcium homeostasis in different signaling pathways.
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Affiliation(s)
| | - Cristina Ruberti
- Department of Biosciences, University of Milan, Milano 20133, Italy
| | - Matteo Grenzi
- Department of Biosciences, University of Milan, Milano 20133, Italy
| | | | - Alex Costa
- Department of Biosciences, University of Milan, Milano 20133, Italy
- Institute of Biophysics, National Research Council of Italy (CNR), Milano 20133, Italy
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6
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Pirayesh N, Giridhar M, Ben Khedher A, Vothknecht UC, Chigri F. Organellar calcium signaling in plants: An update. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH 2021; 1868:118948. [PMID: 33421535 DOI: 10.1016/j.bbamcr.2021.118948] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 10/05/2020] [Revised: 12/17/2020] [Accepted: 12/18/2020] [Indexed: 12/13/2022]
Abstract
Calcium ion (Ca2+) is a versatile signaling transducer in all eukaryotic organisms. In plants, intracellular changes in free Ca2+ levels act as regulators in many growth and developmental processes. Ca2+ also mediates the cellular responses to environmental stimuli and thus plays an important role in providing stress tolerance to plants. Ca2+ signals are decoded by a tool kit of various families of Ca2+-binding proteins and their downstream targets, which mediate the transformation of the Ca2+ signal into appropriate cellular response. Early interest and research on Ca2+ signaling focused on its function in the cytosol, however it has become evident that this important regulatory pathway also exists in organelles such as nucleus, chloroplast, mitochondria, peroxisomes and the endomembrane system. In this review, we give an overview on the knowledge about organellar Ca2+ signaling with a focus on recent advances and developments.
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Affiliation(s)
- Niloufar Pirayesh
- Plant Cell Biology, IZMB, University of Bonn, Kirschallee 1, 53115 Bonn, Germany
| | - Maya Giridhar
- Plant Cell Biology, IZMB, University of Bonn, Kirschallee 1, 53115 Bonn, Germany
| | - Ahlem Ben Khedher
- Plant Cell Biology, IZMB, University of Bonn, Kirschallee 1, 53115 Bonn, Germany
| | - Ute C Vothknecht
- Plant Cell Biology, IZMB, University of Bonn, Kirschallee 1, 53115 Bonn, Germany.
| | - Fatima Chigri
- Plant Cell Biology, IZMB, University of Bonn, Kirschallee 1, 53115 Bonn, Germany.
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7
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Tian W, Wang C, Gao Q, Li L, Luan S. Calcium spikes, waves and oscillations in plant development and biotic interactions. NATURE PLANTS 2020; 6:750-759. [PMID: 32601423 DOI: 10.1038/s41477-020-0667-6] [Citation(s) in RCA: 140] [Impact Index Per Article: 35.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Accepted: 04/15/2020] [Indexed: 05/08/2023]
Abstract
The calcium ion (Ca2+) is a universal signal in all eukaryotic cells. A fundamental question is how Ca2+, a simple cation, encodes complex information with high specificity. Extensive research has established a two-step process (encoding and decoding) that governs the specificity of Ca2+ signals. While the encoding mechanism entails a complex array of channels and transporters, the decoding process features a number of Ca2+ sensors and effectors that convert Ca2+ signals into cellular effects. Along this general paradigm, some signalling components may be highly conserved, but others are divergent among different organisms. In plant cells, Ca2+ participates in numerous signalling processes, and here we focus on the latest discoveries on Ca2+-encoding mechanisms in development and biotic interactions. In particular, we use examples such as polarized cell growth of pollen tube and root hair in which tip-focused Ca2+ oscillations specify the signalling events for rapid cell elongation. In plant-microbe interactions, Ca2+ spiking and oscillations hold the key to signalling specificity: while pathogens elicit cytoplasmic spiking, symbiotic microorganisms trigger nuclear Ca2+ oscillations. Herbivore attacks or mechanical wounding can trigger Ca2+ waves traveling a long distance to transmit and convert the local signal to a systemic defence program in the whole plant. What channels and transporters work together to carve out the spatial and temporal patterns of the Ca2+ fluctuations? This question has remained enigmatic for decades until recent studies uncovered Ca2+ channels that orchestrate specific Ca2+ signatures in each of these processes. Future work will further expand the toolkit for Ca2+-encoding mechanisms and place Ca2+ signalling steps into larger signalling networks.
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Affiliation(s)
- Wang Tian
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, USA
- School of Life Sciences, Northwest University, Xi'an, China
| | - Chao Wang
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, USA
| | - Qifei Gao
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, USA
- School of Life Sciences, Northwest University, Xi'an, China
| | - Legong Li
- School of Life Sciences, Capital Normal University, Beijing, China
| | - Sheng Luan
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, USA.
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8
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Vaz Martins T, Livina VN. What Drives Symbiotic Calcium Signalling in Legumes? Insights and Challenges of Imaging. Int J Mol Sci 2019; 20:ijms20092245. [PMID: 31067698 PMCID: PMC6539980 DOI: 10.3390/ijms20092245] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Revised: 04/24/2019] [Accepted: 04/30/2019] [Indexed: 12/11/2022] Open
Abstract
We review the contribution of bioimaging in building a coherent understanding of Ca 2 + signalling during legume-bacteria symbiosis. Currently, two different calcium signals are believed to control key steps of the symbiosis: a Ca 2 + gradient at the tip of the legume root hair is involved in the development of an infection thread, while nuclear Ca 2 + oscillations, the hallmark signal of this symbiosis, control the formation of the root nodule, where bacteria fix nitrogen. Additionally, different Ca 2 + spiking signatures have been associated with specific infection stages. Bioimaging is intrinsically a cross-disciplinary area that requires integration of image recording, processing and analysis. We used experimental examples to critically evaluate previously-established conclusions and draw attention to challenges caused by the varying nature of the signal-to-noise ratio in live imaging. We hypothesise that nuclear Ca 2 + spiking is a wide-range signal involving the entire root hair and that the Ca 2 + signature may be related to cytoplasmic streaming.
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Affiliation(s)
- Teresa Vaz Martins
- Computational and Systems Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK.
| | - Valerie N Livina
- Data Science Group, National Physical Laboratory, Hampton Road, Teddington, Middlesex TW11 0LW, UK.
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9
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Behera S, Xu Z, Luoni L, Bonza MC, Doccula FG, De Michelis MI, Morris RJ, Schwarzländer M, Costa A. Cellular Ca 2+ Signals Generate Defined pH Signatures in Plants. THE PLANT CELL 2018; 30:2704-2719. [PMID: 30377237 PMCID: PMC6305977 DOI: 10.1105/tpc.18.00655] [Citation(s) in RCA: 93] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2018] [Accepted: 10/29/2018] [Indexed: 05/05/2023]
Abstract
Ca2+ play a key role in cell signaling across organisms. The question of how a simple ion can mediate specific outcomes has spurred research into the role of Ca2+ signatures and their encoding and decoding machinery. Such studies have frequently focused on Ca2+ alone and our understanding of how Ca2+ signaling is integrated with other responses is poor. Using in vivo imaging with different genetically encoded fluorescent sensors in Arabidopsis (Arabidopsis thaliana) cells, we show that Ca2+ transients do not occur in isolation but are accompanied by pH changes in the cytosol. We estimate the degree of cytosolic acidification at up to 0.25 pH units in response to external ATP in seedling root tips. We validated this pH-Ca2+ link for distinct stimuli. Our data suggest that the association with pH may be a general feature of Ca2+ transients that depends on the transient characteristics and the intracellular compartment. These findings suggest a fundamental link between Ca2+ and pH dynamics in plant cells, generalizing previous observations of their association in growing pollen tubes and root hairs. Ca2+ signatures act in concert with pH signatures, possibly providing an additional layer of cellular signal transduction to tailor signal specificity.
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Affiliation(s)
- Smrutisanjita Behera
- Department of Biosciences, University of Milan, 20133 Milan, Italy
- Indian Institute of Chemical Biology, Council of Scientific and Industrial Research, 700 032 West Bengal, India
| | - Zhaolong Xu
- Department of Biosciences, University of Milan, 20133 Milan, Italy
- Salt-Soil Agricultural Center, Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China
| | - Laura Luoni
- Department of Biosciences, University of Milan, 20133 Milan, Italy
| | | | | | | | - Richard J. Morris
- Computational and Systems Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
| | - Markus Schwarzländer
- Institute for Biology and Biotechnology of Plants, University of Münster, 48143 Münster, Germany
| | - Alex Costa
- Department of Biosciences, University of Milan, 20133 Milan, Italy
- Institute of Biophysics, Consiglio Nazionale delle Ricerche, 20133 Milan, Italy
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10
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Kelner A, Leitão N, Chabaud M, Charpentier M, de Carvalho-Niebel F. Dual Color Sensors for Simultaneous Analysis of Calcium Signal Dynamics in the Nuclear and Cytoplasmic Compartments of Plant Cells. FRONTIERS IN PLANT SCIENCE 2018; 9:245. [PMID: 29535753 PMCID: PMC5835324 DOI: 10.3389/fpls.2018.00245] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2017] [Accepted: 02/12/2018] [Indexed: 05/17/2023]
Abstract
Spatiotemporal changes in cellular calcium (Ca2+) concentrations are essential for signal transduction in a wide range of plant cellular processes. In legumes, nuclear and perinuclear-localized Ca2+ oscillations have emerged as key signatures preceding downstream symbiotic signaling responses. Förster resonance energy transfer (FRET) yellow-based Ca2+ cameleon probes have been successfully exploited to measure the spatiotemporal dynamics of symbiotic Ca2+ signaling in legumes. Although providing cellular resolution, these sensors were restricted to measuring Ca2+ changes in single subcellular compartments. In this study, we have explored the potential of single fluorescent protein-based Ca2+ sensors, the GECOs, for multicolor and simultaneous imaging of the spatiotemporal dynamics of cytoplasmic and nuclear Ca2+ signaling in root cells. Single and dual fluorescence nuclear and cytoplasmic-localized GECOs expressed in transgenic Medicago truncatula roots and Arabidopsis thaliana were used to successfully monitor Ca2+ responses to microbial biotic and abiotic elicitors. In M. truncatula, we demonstrate that GECOs detect symbiosis-related Ca2+ spiking variations with higher sensitivity than the yellow FRET-based sensors previously used. Additionally, in both M. truncatula and A. thaliana, the dual sensor is now able to resolve in a single root cell the coordinated spatiotemporal dynamics of nuclear and cytoplasmic Ca2+ signaling in vivo. The GECO-based sensors presented here therefore represent powerful tools to monitor Ca2+ signaling dynamics in vivo in response to different stimuli in multi-subcellular compartments of plant cells.
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Affiliation(s)
- Audrey Kelner
- Laboratory of Plant Microbe Interactions, Université de Toulouse, Institut National de la Recherche Agronomique, Centre National de la Recherche Scientifique, Castanet-Tolosan, France
| | - Nuno Leitão
- Department of Cell and Developmental Biology, John Innes Centre, Norwich, United Kingdom
| | - Mireille Chabaud
- Laboratory of Plant Microbe Interactions, Université de Toulouse, Institut National de la Recherche Agronomique, Centre National de la Recherche Scientifique, Castanet-Tolosan, France
| | - Myriam Charpentier
- Department of Cell and Developmental Biology, John Innes Centre, Norwich, United Kingdom
- *Correspondence: Myriam Charpentier
| | - Fernanda de Carvalho-Niebel
- Laboratory of Plant Microbe Interactions, Université de Toulouse, Institut National de la Recherche Agronomique, Centre National de la Recherche Scientifique, Castanet-Tolosan, France
- Fernanda de Carvalho-Niebel
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11
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Tong J, Qi Y, Wang X, Yu L, Su C, Xie W, Zhang J. Cell micropatterning reveals the modulatory effect of cell shape on proliferation through intracellular calcium transients. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH 2017; 1864:2389-2401. [PMID: 28962833 DOI: 10.1016/j.bbamcr.2017.09.015] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2017] [Revised: 09/09/2017] [Accepted: 09/24/2017] [Indexed: 12/14/2022]
Abstract
The mechanism by which cell shape regulates the function of the cell is one of the most important biological issues, but it remains unclear. Here, we investigated the effect of the regulation of cell shape on proliferation by using a micropatterning approach to confine MC3T3-E1 cells into specific shapes. Our results show that the proliferation rate for rectangle-, triangle-, square- and circle-shaped osteoblasts increased sequentially and was related to the nuclear shape index (NSI) but not the cell shape index (CSI). Interestingly, intracellular calcium transients also displayed different patterns, with the number of Ca2+ peaks increasing with the NSI in shaped cells. Further causal investigation revealed that the gene expression levels of the inositol 1,4,5-triphosphate receptor 1 (IP3R1) and sarco/endoplasmic reticulum Ca2+-ATPase 2 (SERCA2), two major calcium cycling proteins in the endoplasmic reticulum (ER), were increased with an increase in NSI as a result of nuclear volume changes. Moreover, the down-regulation of IP3R1 and/or SERCA2 using shRNAs in circle-shaped or control osteoblasts resulted in changes in intracellular calcium transient patterns and cell proliferation rates towards that of smaller-NSI-shaped cells. Our results indicate that changes in cell shape changed nuclear morphology and then the gene expression of IP3R1 and SERCA2, which produced different intracellular calcium transient patterns. The patterns of intracellular calcium transients then determined the proliferation rate of the shaped osteoblasts.
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Affiliation(s)
- Jie Tong
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, PR China
| | - Ying Qi
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, PR China
| | - Xiangmiao Wang
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, PR China
| | - Liyin Yu
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, PR China
| | - Chang Su
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, PR China
| | - Wenjun Xie
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, PR China
| | - Jianbao Zhang
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, PR China.
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12
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Abstract
The eukaryotic nucleus is enclosed by the nuclear envelope, which is perforated by the nuclear pores, the gateways of macromolecular exchange between the nucleoplasm and cytoplasm. The nucleoplasm is organized in a complex three-dimensional fashion that changes over time and in response to stimuli. Within the cell, the nucleus must be viewed as an organelle (albeit a gigantic one) that is a recipient of cytoplasmic forces and capable of morphological and positional dynamics. The most dramatic reorganization of this organelle occurs during mitosis and meiosis. Although many of these aspects are less well understood for the nuclei of plants than for those of animals or fungi, several recent discoveries have begun to place our understanding of plant nuclei firmly into this broader cell-biological context.
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Affiliation(s)
- Iris Meier
- Department of Molecular Genetics, The Ohio State University, Columbus, Ohio 43210;
- Department of Biological and Medical Sciences, Oxford Brookes University, Oxford OX3 0BP, United Kingdom;
| | | | - David E Evans
- Department of Biological and Medical Sciences, Oxford Brookes University, Oxford OX3 0BP, United Kingdom;
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13
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Martins TV, Evans MJ, Wysham DB, Morris RJ. Nuclear pores enable sustained perinuclear calcium oscillations. BMC SYSTEMS BIOLOGY 2016; 10:55. [PMID: 27449670 PMCID: PMC4957432 DOI: 10.1186/s12918-016-0289-9] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/23/2015] [Accepted: 06/14/2016] [Indexed: 11/16/2022]
Abstract
Background Calcium signalling relies on the flux of calcium ions across membranes yet how signals in different compartments are related remains unclear. In particular, similar calcium signals on both sides of the nuclear envelope have been reported and attributed to passive diffusion through nuclear pores. However, observed differing cytosolic and nucleosolic calcium signatures suggest that the signalling machinery in these compartments can act independently. Results We adapt the fire-diffuse-fire model to investigate the generation of perinuclear calcium oscillations. We demonstrate that autonomous spatio-temporal calcium patterns are still possible in the presence of nuclear and cytosolic coupling via nuclear pores. The presence or absence of this autonomy is dependent upon the strength of the coupling and the maximum firing rate of an individual calcium channel. In all cases, coupling through the nuclear pores enables robust signalling with respect to changes in the diffusion constant. Conclusions We show that contradictory interpretations of experimental data with respect to the autonomy of nuclear calcium oscillations can be reconciled within one model, with different observations being a consequence of varying nuclear pore permeabilities for calcium and refractory conditions of channels. Furthermore, our results provide an explanation for why calcium oscillations on both sides of the nuclear envelope may be beneficial for sustained perinuclear signaling. Electronic supplementary material The online version of this article (doi:10.1186/s12918-016-0289-9) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Teresa Vaz Martins
- Computational & Systems Biology and Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, UK.
| | - Matthew J Evans
- Computational & Systems Biology and Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, UK
| | - Derin B Wysham
- Mathematics Department, Wenatchee Valley College, Wenatchee, USA
| | - Richard J Morris
- Computational & Systems Biology and Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, UK
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14
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Zimmermann MR, Mithöfer A, Will T, Felle HH, Furch ACU. Herbivore-Triggered Electrophysiological Reactions: Candidates for Systemic Signals in Higher Plants and the Challenge of Their Identification. PLANT PHYSIOLOGY 2016; 170:2407-19. [PMID: 26872949 PMCID: PMC4825135 DOI: 10.1104/pp.15.01736] [Citation(s) in RCA: 65] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2015] [Accepted: 02/09/2016] [Indexed: 05/19/2023]
Abstract
In stressed plants, electrophysiological reactions (elRs) are presumed to contribute to long-distance intercellular communication between distant plant parts. Because of the focus on abiotic stress-induced elRs in recent decades, biotic stress-triggered elRs have been widely ignored. It is likely that the challenge to identify the particular elR types (action potential [AP], variation potential, and system potential [SP]) was responsible for this course of action. Thus, this survey focused on insect larva feeding (Spodoptera littoralis and Manduca sexta) that triggers distant APs, variation potentials, and SPs in monocotyledonous and dicotyledonous plant species (Hordeum vulgare, Vicia faba, and Nicotiana tabacum). APs were detected only after feeding on the stem/culm, whereas SPs were observed systemically following damage to both stem/culm and leaves. This was attributed to the unequal vascular innervation of the plant and a selective electrophysiological connectivity of the plant tissue. However, striking variations in voltage patterns were detected for each elR type. Further analyses (also in Brassica napus and Cucurbita maxima) employing complementary electrophysiological approaches in response to different stimuli revealed various reasons for these voltage pattern variations: an intrinsic plasticity of elRs, a plant-specific signature of elRs, a specific influence of the applied (a)biotic trigger, the impact of the technical approach, and/or the experimental setup. As a consequence, voltage pattern variations, which are not irregular but rather common, need to be included in electrophysiological signaling analysis. Due to their widespread occurrence, systemic propagation, and respective triggers, elRs should be considered as candidates for long-distance communication in higher plants.
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Affiliation(s)
- Matthias R Zimmermann
- Institute of General Botany and Plant Physiology, Friedrich-Schiller-University, D-07743 Jena, Germany (M.R.Z., A.C.U.F.);Department of Bioorganic Chemistry, Max Planck Institute for Chemical Ecology, D-07745 Jena, Germany (A.M.);Plant Cell Biology Research Group, Institute of General Botany, Justus-Liebig-University, D-35390 Gießen, Germany (T.W.); andInstitute of General Botany, Justus-Liebig-University, D-35390 Gießen, Germany (H.H.F.)
| | - Axel Mithöfer
- Institute of General Botany and Plant Physiology, Friedrich-Schiller-University, D-07743 Jena, Germany (M.R.Z., A.C.U.F.);Department of Bioorganic Chemistry, Max Planck Institute for Chemical Ecology, D-07745 Jena, Germany (A.M.);Plant Cell Biology Research Group, Institute of General Botany, Justus-Liebig-University, D-35390 Gießen, Germany (T.W.); andInstitute of General Botany, Justus-Liebig-University, D-35390 Gießen, Germany (H.H.F.)
| | - Torsten Will
- Institute of General Botany and Plant Physiology, Friedrich-Schiller-University, D-07743 Jena, Germany (M.R.Z., A.C.U.F.);Department of Bioorganic Chemistry, Max Planck Institute for Chemical Ecology, D-07745 Jena, Germany (A.M.);Plant Cell Biology Research Group, Institute of General Botany, Justus-Liebig-University, D-35390 Gießen, Germany (T.W.); andInstitute of General Botany, Justus-Liebig-University, D-35390 Gießen, Germany (H.H.F.)
| | - Hubert H Felle
- Institute of General Botany and Plant Physiology, Friedrich-Schiller-University, D-07743 Jena, Germany (M.R.Z., A.C.U.F.);Department of Bioorganic Chemistry, Max Planck Institute for Chemical Ecology, D-07745 Jena, Germany (A.M.);Plant Cell Biology Research Group, Institute of General Botany, Justus-Liebig-University, D-35390 Gießen, Germany (T.W.); andInstitute of General Botany, Justus-Liebig-University, D-35390 Gießen, Germany (H.H.F.)
| | - Alexandra C U Furch
- Institute of General Botany and Plant Physiology, Friedrich-Schiller-University, D-07743 Jena, Germany (M.R.Z., A.C.U.F.);Department of Bioorganic Chemistry, Max Planck Institute for Chemical Ecology, D-07745 Jena, Germany (A.M.);Plant Cell Biology Research Group, Institute of General Botany, Justus-Liebig-University, D-35390 Gießen, Germany (T.W.); andInstitute of General Botany, Justus-Liebig-University, D-35390 Gießen, Germany (H.H.F.)
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15
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Checchetto V, Teardo E, Carraretto L, Leanza L, Szabo I. Physiology of intracellular potassium channels: A unifying role as mediators of counterion fluxes? BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2016; 1857:1258-1266. [PMID: 26970213 DOI: 10.1016/j.bbabio.2016.03.011] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2016] [Revised: 03/06/2016] [Accepted: 03/07/2016] [Indexed: 12/28/2022]
Abstract
Plasma membrane potassium channels importantly contribute to maintain ion homeostasis across the cell membrane. The view is emerging that also those residing in intracellular membranes play pivotal roles for the coordination of correct cell function. In this review we critically discuss our current understanding of the nature and physiological tasks of potassium channels in organelle membranes in both animal and plant cells, with a special emphasis on their function in the regulation of photosynthesis and mitochondrial respiration. In addition, the emerging role of potassium channels in the nuclear membranes in regulating transcription will be discussed. The possible functions of endoplasmic reticulum-, lysosome- and plant vacuolar membrane-located channels are also referred to. Altogether, experimental evidence obtained with distinct channels in different membrane systems points to a possible unifying function of most intracellular potassium channels in counterbalancing the movement of other ions including protons and calcium and modulating membrane potential, thereby fine-tuning crucial cellular processes. This article is part of a Special Issue entitled 'EBEC 2016: 19th European Bioenergetics Conference, Riva del Garda, Italy, July 2-7, 2016', edited by Prof. Paolo Bernardi.
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Affiliation(s)
- Vanessa Checchetto
- Department of Biology, University of Padova, Viale G. Colombo 3, Padova 35131, Italy; Department of Biomedical Sciences, University of Padova, Viale G. Colombo 3, Padova 35131 Italy
| | - Enrico Teardo
- Department of Biology, University of Padova, Viale G. Colombo 3, Padova 35131, Italy
| | - Luca Carraretto
- Department of Biology, University of Padova, Viale G. Colombo 3, Padova 35131, Italy
| | - Luigi Leanza
- Department of Biology, University of Padova, Viale G. Colombo 3, Padova 35131, Italy
| | - Ildiko Szabo
- Department of Biology, University of Padova, Viale G. Colombo 3, Padova 35131, Italy; CNR Institute of Neuroscience, University of Padova, Viale G. Colombo 3, Padova 35131, Italy.
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16
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Liu J, Whalley HJ, Knight MR. Combining modelling and experimental approaches to explain how calcium signatures are decoded by calmodulin-binding transcription activators (CAMTAs) to produce specific gene expression responses. THE NEW PHYTOLOGIST 2015; 208:174-87. [PMID: 25917109 PMCID: PMC4832281 DOI: 10.1111/nph.13428] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2015] [Accepted: 03/26/2015] [Indexed: 05/23/2023]
Abstract
Experimental data show that Arabidopsis thaliana is able to decode different calcium signatures to produce specific gene expression responses. It is also known that calmodulin-binding transcription activators (CAMTAs) have calmodulin (CaM)-binding domains. Therefore, the gene expression responses regulated by CAMTAs respond to calcium signals. However, little is known about how different calcium signatures are decoded by CAMTAs to produce specific gene expression responses. A dynamic model of Ca(2+) -CaM-CAMTA binding and gene expression responses is developed following thermodynamic and kinetic principles. The model is parameterized using experimental data. Then it is used to analyse how different calcium signatures are decoded by CAMTAs to produce specific gene expression responses. Modelling analysis reveals that: calcium signals in the form of cytosolic calcium concentration elevations are nonlinearly amplified by binding of Ca(2+) , CaM and CAMTAs; amplification of Ca(2+) signals enables calcium signatures to be decoded to give specific CAMTA-regulated gene expression responses; gene expression responses to a calcium signature depend upon its history and accumulate all the information during the lifetime of the calcium signature. Information flow from calcium signatures to CAMTA-regulated gene expression responses has been established by combining experimental data with mathematical modelling.
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Affiliation(s)
- Junli Liu
- School of Biological and Biomedical SciencesDurham Centre for Crop Improvement TechnologyDurham UniversitySouth RoadDurhamDH1 3LEUK
| | - Helen J. Whalley
- Cell Signalling GroupCancer Research UK Manchester InstituteThe University of ManchesterManchesterM20 4BXUK
| | - Marc R. Knight
- School of Biological and Biomedical SciencesDurham Centre for Crop Improvement TechnologyDurham UniversitySouth RoadDurhamDH1 3LEUK
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17
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Abstract
Rhizobia and arbuscular mycorrhizal fungi produce signals that are perceived by host legume receptors at the plasma membrane and trigger sustained oscillations of the nuclear and perinuclear Ca(2+) concentration (Ca(2+) spiking), which in turn leads to gene expression and downstream symbiotic responses. The activation of Ca(2+) spiking requires the plasma membrane-localized receptor-like kinase Does not Make Infections 2 (DMI2) as well as the nuclear cation channel DMI1. A key enzyme regulating the mevalonate (MVA) pathway, 3-Hydroxy-3-Methylglutaryl CoA Reductase 1 (HMGR1), interacts with DMI2 and is required for the legume-rhizobium symbiosis. Here, we show that HMGR1 is required to initiate Ca(2+) spiking and symbiotic gene expression in Medicago truncatula roots in response to rhizobial and arbuscular mycorrhizal fungal signals. Furthermore, MVA, the direct product of HMGR1 activity, is sufficient to induce nuclear-associated Ca(2+) spiking and symbiotic gene expression in both wild-type plants and dmi2 mutants, but interestingly not in dmi1 mutants. Finally, MVA induced Ca(2+) spiking in Human Embryonic Kidney 293 cells expressing DMI1. This demonstrates that the nuclear cation channel DMI1 is sufficient to support MVA-induced Ca(2+) spiking in this heterologous system.
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18
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Chen J, Gutjahr C, Bleckmann A, Dresselhaus T. Calcium signaling during reproduction and biotrophic fungal interactions in plants. MOLECULAR PLANT 2015; 8:595-611. [PMID: 25660409 DOI: 10.1016/j.molp.2015.01.023] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2014] [Revised: 01/18/2015] [Accepted: 01/20/2015] [Indexed: 05/25/2023]
Abstract
Many recent studies have indicated that cellular communications during plant reproduction, fungal invasion, and defense involve identical or similar molecular players and mechanisms. Indeed, pollen tube invasion and sperm release shares many common features with infection of plant tissue by fungi and oomycetes, as a tip-growing intruder needs to communicate with the receptive cells to gain access into a cell and tissue. Depending on the compatibility between cells, interactions may result in defense, invasion, growth support, or cell death. Plant cells stimulated by both pollen tubes and fungal hyphae secrete, for example, small cysteine-rich proteins and receptor-like kinases are activated leading to intracellular signaling events such as the production of reactive oxygen species (ROS) and the generation of calcium (Ca(2+)) transients. The ubiquitous and versatile second messenger Ca(2+) thereafter plays a central and crucial role in modulating numerous downstream signaling processes. In stimulated cells, it elicits both fast and slow cellular responses depending on the shape, frequency, amplitude, and duration of the Ca(2+) transients. The various Ca(2+) signatures are transduced into cellular information via a battery of Ca(2+)-binding proteins. In this review, we focus on Ca(2+) signaling and discuss its occurrence during plant reproduction and interactions of plant cells with biotrophic filamentous microbes. The participation of Ca(2+) in ROS signaling pathways is also discussed.
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Affiliation(s)
- Junyi Chen
- Cell Biology and Plant Biochemistry, Biochemie-Zentrum Regensburg, University of Regensburg, Universitätsstraße 31, D-93053 Regensburg, Germany
| | - Caroline Gutjahr
- Faculty of Biology Genetics, Biocenter Martinsried, University of Munich (LMU), Grosshaderner Strasse 2-4, D-82152 Martinsried, Germany
| | - Andrea Bleckmann
- Cell Biology and Plant Biochemistry, Biochemie-Zentrum Regensburg, University of Regensburg, Universitätsstraße 31, D-93053 Regensburg, Germany
| | - Thomas Dresselhaus
- Cell Biology and Plant Biochemistry, Biochemie-Zentrum Regensburg, University of Regensburg, Universitätsstraße 31, D-93053 Regensburg, Germany.
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19
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Thul R, Rietdorf K, Bootman MD, Coombes S. Unifying principles of calcium wave propagation - Insights from a three-dimensional model for atrial myocytes. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH 2015; 1853:2131-43. [PMID: 25746480 DOI: 10.1016/j.bbamcr.2015.02.019] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2014] [Revised: 02/17/2015] [Accepted: 02/23/2015] [Indexed: 11/30/2022]
Abstract
Atrial myocytes in a number of species lack transverse tubules. As a consequence the intracellular calcium signals occurring during each heartbeat exhibit complex spatio-temporal dynamics. These calcium patterns arise from saltatory calcium waves that propagate via successive rounds of diffusion and calcium-induced calcium release. The many parameters that impinge on calcium-induced calcium release and calcium signal propagation make it difficult to know a priori whether calcium waves will successfully travel, or be extinguished. In this study, we describe in detail a mathematical model of calcium signalling that allows the effect of such parameters to be independently assessed. A key aspect of the model is to follow the triggering and evolution of calcium signals within a realistic three-dimensional cellular volume of an atrial myocyte, but with low computational costs. This is achieved by solving the linear transport equation for calcium analytically between calcium release events and by expressing the onset of calcium liberation as a threshold process. The model makes non-intuitive predictions about calcium signal propagation. For example, our modelling illustrates that the boundary of a cell produces a wave-guiding effect that enables calcium ions to propagate further and for longer, and can subtly alter the pattern of calcium wave movement. The high spatial resolution of the modelling framework allows the study of any arrangement of calcium release sites. We demonstrate that even small variations in randomly positioned release sites cause highly heterogeneous cellular responses. This article is part of a Special Issue entitled: 13th European Symposium on Calcium.
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Affiliation(s)
- R Thul
- School of Mathematical Sciences, University of Nottingham, Nottingham NG7 2RD, UK
| | - K Rietdorf
- Department of Life, Health and Chemical Sciences, The Open University, Walton Hall, Milton Keynes MK7 6AA, UK
| | - M D Bootman
- Department of Life, Health and Chemical Sciences, The Open University, Walton Hall, Milton Keynes MK7 6AA, UK
| | - S Coombes
- School of Mathematical Sciences, University of Nottingham, Nottingham NG7 2RD, UK
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20
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Moscatiello R, Zaccarin M, Ercolin F, Damiani E, Squartini A, Roveri A, Navazio L. Identification of ferredoxin II as a major calcium binding protein in the nitrogen-fixing symbiotic bacterium Mesorhizobium loti. BMC Microbiol 2015; 15:16. [PMID: 25648224 PMCID: PMC4322793 DOI: 10.1186/s12866-015-0352-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2014] [Accepted: 01/16/2015] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Legumes establish with rhizobial bacteria a nitrogen-fixing symbiosis which is of the utmost importance for both plant nutrition and a sustainable agriculture. Calcium is known to act as a key intracellular messenger in the perception of symbiotic signals by both the host plant and the microbial partner. Regulation of intracellular free Ca(2+) concentration, which is a fundamental prerequisite for any Ca(2+)-based signalling system, is accomplished by complex mechanisms including Ca(2+) binding proteins acting as Ca(2+) buffers. In this work we investigated the occurrence of Ca(2+) binding proteins in Mesorhizobium loti, the specific symbiotic partner of the model legume Lotus japonicus. RESULTS A soluble, low molecular weight protein was found to share several biochemical features with the eukaryotic Ca(2+)-binding proteins calsequestrin and calreticulin, such as Stains-all blue staining on SDS-PAGE, an acidic isoelectric point and a Ca(2+)-dependent shift of electrophoretic mobility. The protein was purified to homogeneity by an ammonium sulfate precipitation procedure followed by anion-exchange chromatography on DEAE-Cellulose and electroendosmotic preparative electrophoresis. The Ca(2+) binding ability of the M. loti protein was demonstrated by (45)Ca(2+)-overlay assays. ESI-Q-TOF MS/MS analyses of the peptides generated after digestion with either trypsin or endoproteinase AspN identified the rhizobial protein as ferredoxin II and confirmed the presence of Ca(2+) adducts. CONCLUSIONS The present data indicate that ferredoxin II is a major Ca(2+) binding protein in M. loti that may participate in Ca(2+) homeostasis and suggest an evolutionarily ancient origin for protein-based Ca(2+) regulatory systems.
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Affiliation(s)
- Roberto Moscatiello
- Department of Biology, University of Padova, Via U. Bassi 58/B, 35131, Padova, Italy.
| | - Mattia Zaccarin
- Department of Molecular Medicine, University of Padova, Viale G. Colombo 3, 35131, Padova, Italy.
| | - Flavia Ercolin
- Department of Biology, University of Padova, Via U. Bassi 58/B, 35131, Padova, Italy.
| | - Ernesto Damiani
- Department of Biomedical Sciences, University of Padova, Viale G. Colombo 3, 35131, Padova, Italy.
| | - Andrea Squartini
- Department of Agronomy, Food, Natural Resources, Animals and Environment, DAFNAE, University of Padova, Viale dell'Università 16, 35020, Legnaro, Padova, Italy.
| | - Antonella Roveri
- Department of Molecular Medicine, University of Padova, Viale G. Colombo 3, 35131, Padova, Italy.
| | - Lorella Navazio
- Department of Biology, University of Padova, Via U. Bassi 58/B, 35131, Padova, Italy.
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21
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Experimental Measurements and Mathematical Modeling of Cytosolic Ca(2+) Signatures upon Elicitation by Penta-N-acetylchitopentaose Oligosaccharides in Nicotiana tabacum Cell Cultures. PLANTS 2013; 2:750-68. [PMID: 27137402 PMCID: PMC4844394 DOI: 10.3390/plants2040750] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2013] [Revised: 11/04/2013] [Accepted: 11/08/2013] [Indexed: 12/28/2022]
Abstract
Plants have developed sophisticated recognition systems for different kinds of pathogens. Pathogen-associated molecular patterns (PAMPs) can induce various defense mechanisms, e.g., the production of reactive oxygen species (ROS) as an early event. Plant defense reactions are initiated by a signal transduction cascade involving the release of calcium ions (Ca2+) from both external and internal stores to the plant cytoplasm. This work focuses on the analysis of cytosolic Ca2+ signatures, experimentally and theoretically. Cytosolic Ca2+ signals were measured in Nicotiana tabacum plant cell cultures after elicitation with penta-N-acetylchitopentaose oligosaccharides (Ch5). In order to allow a mathematical simulation of the elicitor-triggered Ca2+ release, the Li and Rinzel model was adapted to the situation in plants. The main features of the Ca2+ response, like the specific shape of the Ca2+ transient and the dose-response relationship, could be reproduced very well. Repeated elicitation of the same cell culture revealed a refractory behavior with respect to the Ca2+ transients for this condition. Detailed analysis of the obtained data resulted in further modifications of the mathematical model, allowing a predictive simulation of Ch5-induced Ca2+ transients. The promising results may contribute to a deeper understanding of the underlying mechanisms governing plant defense.
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22
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Charpentier M, Oldroyd GE. Nuclear calcium signaling in plants. PLANT PHYSIOLOGY 2013; 163:496-503. [PMID: 23749852 PMCID: PMC3793031 DOI: 10.1104/pp.113.220863] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2013] [Accepted: 06/05/2013] [Indexed: 05/18/2023]
Abstract
Plant cell nuclei can generate calcium responses to a variety of inputs, tantamount among them the response to signaling molecules from symbiotic microorganisms .
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Affiliation(s)
- Myriam Charpentier
- Department of Cell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom
| | - Giles E.D. Oldroyd
- Department of Cell and Developmental Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom
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23
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Martins TV, Evans MJ, Woolfenden HC, Morris RJ. Towards the Physics of Calcium Signalling in Plants. PLANTS (BASEL, SWITZERLAND) 2013; 2:541-88. [PMID: 27137393 PMCID: PMC4844391 DOI: 10.3390/plants2040541] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2013] [Revised: 09/17/2013] [Accepted: 09/22/2013] [Indexed: 12/21/2022]
Abstract
Calcium is an abundant element with a wide variety of important roles within cells. Calcium ions are inter- and intra-cellular messengers that are involved in numerous signalling pathways. Fluctuating compartment-specific calcium ion concentrations can lead to localised and even plant-wide oscillations that can regulate downstream events. Understanding the mechanisms that give rise to these complex patterns that vary both in space and time can be challenging, even in cases for which individual components have been identified. Taking a systems biology approach, mathematical and computational techniques can be employed to produce models that recapitulate experimental observations and capture our current understanding of the system. Useful models make novel predictions that can be investigated and falsified experimentally. This review brings together recent work on the modelling of calcium signalling in plants, from the scale of ion channels through to plant-wide responses to external stimuli. Some in silico results that have informed later experiments are highlighted.
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Affiliation(s)
- Teresa Vaz Martins
- Computational and Systems Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
| | - Matthew J Evans
- Computational and Systems Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
| | - Hugh C Woolfenden
- Computational and Systems Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
| | - Richard J Morris
- Computational and Systems Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK.
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24
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Speak, friend, and enter: signalling systems that promote beneficial symbiotic associations in plants. Nat Rev Microbiol 2013; 11:252-63. [PMID: 23493145 DOI: 10.1038/nrmicro2990] [Citation(s) in RCA: 826] [Impact Index Per Article: 75.1] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Plants associate with a wide range of microorganisms, with both detrimental and beneficial outcomes. Central to plant survival is the ability to recognize invading microorganisms and either limit their intrusion, in the case of pathogens, or promote the association, in the case of symbionts. To aid in this recognition process, elaborate communication and counter-communication systems have been established that determine the degree of ingress of the microorganism into the host plant. In this Review, I describe the common signalling processes used by plants during mutualistic interactions with microorganisms as diverse as arbuscular mycorrhizal fungi and rhizobial bacteria.
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25
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Oldroyd GED. Speak, friend, and enter: signalling systems that promote beneficial symbiotic associations in plants. Nat Rev Microbiol 2013. [PMID: 23493145 DOI: 10.1038/nrmicro.2990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Plants associate with a wide range of microorganisms, with both detrimental and beneficial outcomes. Central to plant survival is the ability to recognize invading microorganisms and either limit their intrusion, in the case of pathogens, or promote the association, in the case of symbionts. To aid in this recognition process, elaborate communication and counter-communication systems have been established that determine the degree of ingress of the microorganism into the host plant. In this Review, I describe the common signalling processes used by plants during mutualistic interactions with microorganisms as diverse as arbuscular mycorrhizal fungi and rhizobial bacteria.
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Affiliation(s)
- Giles E D Oldroyd
- Department of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK.
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26
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Charpentier M, Vaz Martins T, Granqvist E, Oldroyd GE, Morris RJ. The role of DMI1 in establishing Ca (2+) oscillations in legume symbioses. PLANT SIGNALING & BEHAVIOR 2013; 8:e22894. [PMID: 23299416 PMCID: PMC3656989 DOI: 10.4161/psb.22894] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2012] [Accepted: 11/14/2012] [Indexed: 05/20/2023]
Abstract
Calcium (Ca (2+)) is a key secondary messenger in many plant signaling pathways. One such pathway is the SYM pathway, required in the establishment of both arbuscular mycorrhizal and rhizobial root symbioses with legume host plants. (1) When the host plant has perceived the diffusible signals from the microbial symbionts, one of the earliest physiological responses are Ca (2+) oscillations in and around the nucleus. (2) These oscillations are essential for activating downstream gene expression, but the precise mechanisms of encoding and decoding the Ca (2+) signals are unclear and still under intense investigation. Here we put forward a hypothesis for the mechanism of the cation channel DMI1.
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Affiliation(s)
| | | | - Emma Granqvist
- Computational and Systems Biology; John Innes Centre; Norwich, UK
| | | | - Richard J. Morris
- Computational and Systems Biology; John Innes Centre; Norwich, UK
- Correspondence to: Richard J. Morris,
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