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Hu X, Yasir M, Zhuo Y, Cai Y, Ren X, Rong J. Genomic insights into glume pubescence in durum wheat: GWAS and haplotype analysis implicates TdELD1-1A as a candidate gene. Gene 2024; 909:148309. [PMID: 38417687 DOI: 10.1016/j.gene.2024.148309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Revised: 02/19/2024] [Accepted: 02/21/2024] [Indexed: 03/01/2024]
Abstract
Glume pubescence is an important morphological trait for the characterization of wheat cultivars. It shows tolerance to biotic and abiotic stresses to some extent. Hg1 (formerly named Hg) locus on chromosome 1AS controls glume pubescence in wheat. Its genetic analysis, fine-mapping and candidate gene analysis have been widely studied recently, however, the cloning of Hg1 has not yet been reported. Here, we conducted a GWAS between a dense panel of 171,103 SNPs and glume pubescence (Gp) in a durum wheat population of 145 lines, and further analyzed the candidate genes of Hg1 combined with the gene expression, functional annotation, and haplotype analysis. As a results, TRITD0Uv1G104670 (TdELD1-1A), encoding glycosyltransferase-like ELD1/KOBITO 1, was detected as the most promising candidate gene of Hg1 for glume pubescence in durum wheat. Our findings not only contribute to a deeper understanding of its cloning and functional validation but also underscore the significance of accurate genome sequences and annotations. Additionally, our study highlights the relevance of unanchored sequences in chrUn and the application of bioinformatics analysis for gene discovery in durum wheat.
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Affiliation(s)
- Xin Hu
- The Key Laboratory for Quality Improvement of Agricultural Products of Zhejiang Province, College of Advanced Agricultural Sciences, Zhejiang A&F University, Lin'an, Hangzhou 311300, Zhejiang, China
| | - Muhammad Yasir
- The Key Laboratory for Quality Improvement of Agricultural Products of Zhejiang Province, College of Advanced Agricultural Sciences, Zhejiang A&F University, Lin'an, Hangzhou 311300, Zhejiang, China
| | - Yujie Zhuo
- The Key Laboratory for Quality Improvement of Agricultural Products of Zhejiang Province, College of Advanced Agricultural Sciences, Zhejiang A&F University, Lin'an, Hangzhou 311300, Zhejiang, China
| | - Yijing Cai
- The Key Laboratory for Quality Improvement of Agricultural Products of Zhejiang Province, College of Advanced Agricultural Sciences, Zhejiang A&F University, Lin'an, Hangzhou 311300, Zhejiang, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China
| | - Xifeng Ren
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China.
| | - Junkang Rong
- The Key Laboratory for Quality Improvement of Agricultural Products of Zhejiang Province, College of Advanced Agricultural Sciences, Zhejiang A&F University, Lin'an, Hangzhou 311300, Zhejiang, China.
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2
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Hu X, Zuo J. Population Genomics and Haplotype Analysis in Bread Wheat Identify a Gene Regulating Glume Pubescence. FRONTIERS IN PLANT SCIENCE 2022; 13:897772. [PMID: 35909788 PMCID: PMC9328021 DOI: 10.3389/fpls.2022.897772] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Accepted: 06/20/2022] [Indexed: 06/15/2023]
Abstract
Glume hairiness or pubescence is an important morphological trait with high heritability to distinguish/characterize wheat and is related to the resistance to biotic and abiotic stresses. Hg1 (formerly named Hg) on chromosome arm 1AS controlled glume hairiness in wheat. Its genetic analysis and mapping have been widely studied, yet more useful and accurate information for fine mapping of Hg1 and identification of its candidate gene is lacking. The cloning of this gene has not yet been reported for the large complex wheat genome. Here, we performed a GWAS between SNP markers and glume pubescence (Gp) in a wheat population with 352 lines and further demonstrated the gene expression and haplotype analysis approach for isolating the Hg1 gene. One gene, TraesCSU02G143200 (TaELD1-1A), encoding glycosyltransferase-like ELD1/KOBITO 1, was identified as the most promising candidate gene of Hg1. The gene annotation, expression pattern, function SNP variation, haplotype analysis, and co-expression analysis in floral organ (spike) development indicated that it is likely to be involved in the regulation of glume pubescence. Our study demonstrates the importance of high-quality reference genomes and annotation information, as well as bioinformatics analysis, for gene cloning in wheat.
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Affiliation(s)
- Xin Hu
- The Key Laboratory for Quality Improvement of Agricultural Products of Zhejiang Province, College of Advanced Agricultural Sciences, Zhejiang A&F University, Hangzhou, China
| | - Jianfang Zuo
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
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3
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Macnee NC, Rebstock R, Hallett IC, Schaffer RJ, Bulley SM. A review of current knowledge about the formation of native peridermal exocarp in fruit. FUNCTIONAL PLANT BIOLOGY : FPB 2020; 47:1019-1031. [PMID: 32571472 DOI: 10.1071/fp19135] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Accepted: 05/29/2020] [Indexed: 05/09/2023]
Abstract
The outer skin layer in any plant is essential in offering a protective barrier against water loss and pathogen attack. Within fleshy fruit, the skin supports internal cell layers and can provide the initial cues in attracting seed-dispersing animals. The skin of a fruit, termed the exocarp, is a key element of consumer preference and a target for many breeding programs. Across fruiting species there is a huge diversity of exocarp types and these range from a simple single living cell layer (epidermis) often covered with a waxy layer, to complex multicellular suberised and dead cell layers (periderm), with various intermediate russet forms in between. Each exocarp can be interspersed with other structures such as hairs or spines. The epidermis has been well characterised and remains pluripotent with the help of the cells immediately under the epidermis. The periderm, in contrast, is the result of secondary meristematic activity, which replaces the epidermal layers, and is not well characterised in fruits. In this review we explore the structure, composition and mechanisms that control the development of a periderm type fruit exocarp. We draw upon literature from non-fleshy fruit species that form periderm tissue, from which a considerable amount of research has been undertaken.
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Affiliation(s)
- Nikolai C Macnee
- The New Zealand Institute for Plant and Food Research Limited, 120 Mt Albert Road, Mount Albert, Auckland 1025, New Zealand; and School of Biological Science, The University of Auckland, Auckland, New Zealand
| | - Ria Rebstock
- The New Zealand Institute for Plant and Food Research Limited, 120 Mt Albert Road, Mount Albert, Auckland 1025, New Zealand
| | - Ian C Hallett
- The New Zealand Institute for Plant and Food Research Limited, 120 Mt Albert Road, Mount Albert, Auckland 1025, New Zealand
| | - Robert J Schaffer
- School of Biological Science, The University of Auckland, Auckland, New Zealand; and The New Zealand Institute for Plant and Food Research Limited, 55 Old Mill Road, RD3, Motueka 7198, New Zealand
| | - Sean M Bulley
- The New Zealand Institute for Plant and Food Research Limited, 412 No. 1 Road, RD2, Te Puke 3182, New Zealand; and Corresponding author.
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4
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Bourioug M, Ezzaza K, Bouabid R, Alaoui-Mhamdi M, Bungau S, Bourgeade P, Alaoui-Sossé L, Alaoui-Sossé B, Aleya L. Influence of hydro- and osmo-priming on sunflower seeds to break dormancy and improve crop performance under water stress. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:13215-13226. [PMID: 32016860 DOI: 10.1007/s11356-020-07893-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Accepted: 01/27/2020] [Indexed: 06/10/2023]
Abstract
This study explored the effects of two hydro- and osmo-priming durations (8 and 16 h) on growth and yield components of sunflowers (Helianthus annuus L.) under water stress. The pot experiment, performed under a rain shelter, consisted of 9 treatments replicated five times: unprimed seeds as control (C), hydro-primed seeds (T0), osmo-primed seeds in 10, 20, and 30% PEG-6000 (T1, T2, and T3, respectively). Severe water stress was applied for 12 days to all treatments at the beginning of the flowering stage. Statistical analysis revealed a very highly significant positive effect (p < 0.01) by all treatments on sunflower seed germination compared with the control. Moreover, primed seeds improved significantly for all growth parameters and yield components, but no significant differences were observed according to either priming technique or duration. The highest value of germination capacity, for fresh and dry biomasses, was obtained with PEG-primed seeds at 10% for 16 h. The grain number per anthodium and grain yield per plant from primed seeds were higher than those in the control (1.9- to 2.5-fold and 2.8- to 3.3-fold respectively). Under conditions of water stress, the proline content in primed plants was significantly higher than that in unprimed ones, with the exception of T3 treatment primed for 8 h. Soluble sugars and chlorophyll contents increased significantly with all applied treatments compared with the control. The study showed that the applied priming treatments improved germination characteristics in particular and increased growth and yield components for sunflowers under drought stress conditions.
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Affiliation(s)
- Mohamed Bourioug
- Département d'Agronomie et d'Amélioration des Plantes, Ecole Nationale d'Agriculture de Meknès, km. 10, Route Haj Kaddour, B.P. S/40, 50001, Meknès, Morocco
| | - Kaoutar Ezzaza
- Département d'Agronomie et d'Amélioration des Plantes, Ecole Nationale d'Agriculture de Meknès, km. 10, Route Haj Kaddour, B.P. S/40, 50001, Meknès, Morocco
| | - Rachid Bouabid
- Département d'Agronomie et d'Amélioration des Plantes, Ecole Nationale d'Agriculture de Meknès, km. 10, Route Haj Kaddour, B.P. S/40, 50001, Meknès, Morocco
| | - Mohammed Alaoui-Mhamdi
- Laboratoire d'analyse et modélisation des écosystèmes continentaux, Département de Biologie, Faculté des Sciences Dhar El Mahraz, Université Sidi Mohammed Ben Abdellah, B.P. 1796, 3003, Fez, Morocco
| | - Simona Bungau
- Department of Pharmacy, University of Oradea, 410028, Oradea, Romania
| | - Pascale Bourgeade
- Laboratoire Chrono-Environnement, UMR CNRS 6249, Université de Bourgogne Franche-Comté, 25030, Besançon, France
| | - Laurence Alaoui-Sossé
- Laboratoire Chrono-Environnement, UMR CNRS 6249, Université de Bourgogne Franche-Comté, 25030, Besançon, France
| | - Badr Alaoui-Sossé
- Laboratoire Chrono-Environnement, UMR CNRS 6249, Université de Bourgogne Franche-Comté, 25030, Besançon, France
| | - Lotfi Aleya
- Laboratoire Chrono-Environnement, UMR CNRS 6249, Université de Bourgogne Franche-Comté, 25030, Besançon, France.
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5
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Farrow J, Bellinger M, Rasmussen C. In vitro Conditions for Dark Growth and Analysis of Maize Seedlings. Bio Protoc 2020. [DOI: 10.21769/bioprotoc.3555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022] Open
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6
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Bellinger M, Sidhu S, Rasmussen C. Staining Maize Epidermal Leaf Peels with Toluidine Blue O. Bio Protoc 2019. [DOI: 10.21769/bioprotoc.3214] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022] Open
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7
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Nafisi M, Fimognari L, Sakuragi Y. Interplays between the cell wall and phytohormones in interaction between plants and necrotrophic pathogens. PHYTOCHEMISTRY 2015; 112:63-71. [PMID: 25496656 DOI: 10.1016/j.phytochem.2014.11.008] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2014] [Revised: 09/02/2014] [Accepted: 11/06/2014] [Indexed: 05/04/2023]
Abstract
The plant cell wall surrounds every cell in plants. During microbial infection, the cell wall provides a dynamic interface for interaction with necrotrophic phytopathogens as a rich source of carbohydrates for the growth of pathogens, as a physical barrier restricting the progression of the pathogens, and as an integrity sensory system that can activate intracellular signaling cascades and ultimately lead to a multitude of inducible host defense responses. Studies over the last decade have provided evidence of interplays between the cell wall and phytohormone signaling. This review summarizes the current state of knowledge about the cell wall-phytohormone interplays, with the focus on auxin, cytokinin, brassinosteroids, and abscisic acid, and discuss how they impact the outcome of plant-necrotrophic pathogen interaction.
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Affiliation(s)
- Majse Nafisi
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, Frederiksberg 1871, Denmark
| | - Lorenzo Fimognari
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, Frederiksberg 1871, Denmark
| | - Yumiko Sakuragi
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, Frederiksberg 1871, Denmark.
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8
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Wang X, Jing Y, Zhang B, Zhou Y, Lin R. Glycosyltransferase-like protein ABI8/ELD1/KOB1 promotes Arabidopsis hypocotyl elongation through regulating cellulose biosynthesis. PLANT, CELL & ENVIRONMENT 2015; 38:411-22. [PMID: 24995569 DOI: 10.1111/pce.12395] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2014] [Revised: 06/16/2014] [Accepted: 06/23/2014] [Indexed: 05/22/2023]
Abstract
Seedling de-etiolation (photomorphogenesis) is an important light-regulated developmental process in plants. Here, we showed that disruption of the gene encoding a glycosyltransferase-like protein, ABA INSENSITIVE 8 (ABI8)/ELONGATION EFFECTIVE 1 (ELD1)/KOBITO1 (KOB1), caused short-hypocotyl elongation under all light conditions examined and even in darkness. We found that the ABI8 transcript level was down-regulated by light in a phytochrome A-dependent manner. Furthermore, light destabilized ABI8 protein via the 26S proteasome degradation pathway. We showed that ABI8 promoted the expression of genes involved in cell elongation and cellulose synthesis. Consistently, the cellulose content was reduced in the abi8 mutants and application of 2, 6-dichlorobenzonitrile (an inhibitor of cellulose biosynthesis) mimicked the abi8 mutant phenotype. Moreover, we found that phytochrome and cryptochrome photoreceptors negatively, whereas CONSTITUTIVE PHOTOMORPHOGENIC 1 positively, regulated cellulose synthesis. We also showed that ELONGATED HYPOCOTYL 5 directly bound to the promoters of ABI8 and several cellulose synthesis genes and repressed their expression in light conditions. Taken together, our study reveals that ABI8 functions as a negative factor in light inhibition of hypocotyl elongation through modulating cellulose biosynthesis.
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Affiliation(s)
- Xin Wang
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China; University of the Chinese Academy of Sciences, Beijing, 100049, China
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9
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Mittal A, Balasubramanian R, Cao J, Singh P, Subramanian S, Hicks G, Nothnagel EA, Abidi N, Janda J, Galbraith DW, Rock CD. TOPOISOMERASE 6B is involved in chromatin remodelling associated with control of carbon partitioning into secondary metabolites and cell walls, and epidermal morphogenesis in Arabidopsis. JOURNAL OF EXPERIMENTAL BOTANY 2014; 65:4217-39. [PMID: 24821950 PMCID: PMC4112631 DOI: 10.1093/jxb/eru198] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Plant growth is continuous and modular, a combination that allows morphogenesis by cell division and elongation and serves to facilitate adaptation to changing environments. The pleiotropic phenotypes of the harlequin (hlq) mutant, isolated on the basis of ectopic expression of the abscisic acid (ABA)- and auxin-inducible proDc3:GUS reporter gene, were previously characterized. Mutants are skotomorphogenic, have deformed and collapsed epidermal cells which accumulate callose and starch, cell walls abundant in pectins and cell wall proteins, and abnormal and reduced root hairs and leaf trichomes. hlq and two additional alleles that vary in their phenotypic severity of starch accumulation in the light and dark have been isolated, and it is shown that they are alleles of bin3/hyp6/rhl3/Topoisomerase6B. Mutants and inhibitors affecting the cell wall phenocopy several of the traits displayed in hlq. A microarray analysis was performed, and coordinated expression of physically adjacent pairs/sets of genes was observed in hlq, suggesting a direct effect on chromatin. Histones, WRKY and IAA/AUX transcription factors, aquaporins, and components of ubiquitin-E3-ligase-mediated proteolysis, and ABA or biotic stress response markers as well as proteins involved in cellular processes affecting carbon partitioning into secondary metabolites were also identified. A comparative analysis was performed of the hlq transcriptome with other previously published TopoVI mutant transcriptomes, namely bin3, bin5, and caa39 mutants, and limited concordance between data sets was found, suggesting indirect or genotype-specific effects. The results shed light on the molecular mechanisms underlying the det/cop/fus-like pleiotropic phenotypes of hlq and support a broader role for TopoVI regulation of chromatin remodelling to mediate development in response to environmental and hormonal signals.
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Affiliation(s)
- Amandeep Mittal
- Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409-3131, USA
| | - Rajagopal Balasubramanian
- Tamil Nadu Agricultural University, Department of Plant Breeding and Genetics, Agricultural College and Research Institute, Madurai-625 104, India
| | - Jin Cao
- Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409-3131, USA
| | - Prabhjeet Singh
- Department of Biotechnology, Guru Nanak Dev University, Amritsar-143 005, Punjab, India
| | - Senthil Subramanian
- South Dakota State University, Department of Plant Science, Brookings, SD 57007, USA
| | - Glenn Hicks
- Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA Department of Botany and Plant Sciences, University of California, Riverside CA 92521-0124, USA
| | - Eugene A Nothnagel
- Department of Botany and Plant Sciences, University of California, Riverside CA 92521-0124, USA
| | - Noureddine Abidi
- Texas Tech University, Department of Plant and Soil Science and Fiber and Biopolymer Research Institute, 1001 East Loop 289, Lubbock, TX 79409-5019, USA
| | - Jaroslav Janda
- University of Arizona, Department of Plant Sciences and BIO5 Institute, 341 Keating Bldg, Tucson, AZ 85721, USA
| | - David W Galbraith
- University of Arizona, Department of Plant Sciences and BIO5 Institute, 341 Keating Bldg, Tucson, AZ 85721, USA
| | - Christopher D Rock
- Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409-3131, USA
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Almeida T, Menéndez E, Capote T, Ribeiro T, Santos C, Gonçalves S. Molecular characterization of Quercus suber MYB1, a transcription factor up-regulated in cork tissues. JOURNAL OF PLANT PHYSIOLOGY 2013; 170:172-8. [PMID: 23218545 DOI: 10.1016/j.jplph.2012.08.023] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2012] [Revised: 08/13/2012] [Accepted: 08/13/2012] [Indexed: 05/20/2023]
Abstract
The molecular processes associated with cork development in Quercus suber L. are poorly understood. A previous molecular approach identified a list of genes potentially important for cork formation and differentiation, providing a new basis for further molecular studies. This report is the first molecular characterization of one of these candidate genes, QsMYB1, coding for an R2R3-MYB transcription factor. The R2R3-MYB gene sub-family has been described as being involved in the phenylpropanoid and lignin pathways, both involved in cork biosynthesis. The results showed that the expression of QsMYB1 is putatively mediated by an alternative splicing (AS) mechanism that originates two different transcripts (QsMYB1.1 and QsMYB1.2), differing only in the 5'-untranslated region, due to retention of the first intron in one of the variants. Moreover, within the retained intron, a simple sequence repeat (SSR) was identified. The upstream regulatory region of QsMYB1 was extended by a genome walking approach, which allowed the identification of the putative gene promoter region. The relative expression pattern of QsMYB1 transcripts determined by reverse transcription quantitative polymerase chain reaction (RT-qPCR) revealed that both transcripts were up-regulated in cork tissues; the detected expression was several times higher in newly formed cork harvested from trees producing virgin, second or reproduction cork when compared with wood. Moreover, the expression analysis of QsMYB1 in several Q. suber organs showed very low expression in young branches and roots, whereas in leaves, immature acorns or male flowers, no expression was detected. These preliminary results suggest that QsMYB1 may be related to secondary growth and, in particular, with the cork biosynthesis process with a possible alternative splicing mechanism associated with its regulatory function.
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Affiliation(s)
- Tânia Almeida
- Centro de Biotecnologia Agrícola e Agro-Alimentar do Baixo Alentejo e Litoral (CEBAL)/Instituto Politécnico de Beja (IPBeja), Rua Pedro Soares, 7801-908 Beja, Portugal
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11
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Kong D, Karve R, Willet A, Chen MK, Oden J, Shpak ED. Regulation of plasmodesmatal permeability and stomatal patterning by the glycosyltransferase-like protein KOBITO1. PLANT PHYSIOLOGY 2012; 159:156-68. [PMID: 22457425 PMCID: PMC3406890 DOI: 10.1104/pp.112.194563] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
The differentiation of stomata provides a convenient model for studying pattern formation in plant tissues. Stomata formation is induced by a set of basic helix-loop-helix transcription factors and inhibited by a signal transduction pathway initiated by TOO MANY MOUTHS (TMM) and ERECTA family (ERf) receptors. The formation of a proper stomata pattern is also dependent upon the restriction of symplastic movement of basic helix-loop-helix transcription factors into neighboring cells, especially in the backgrounds where the function of the TMM/ERf signaling pathway is compromised. Here, we describe a novel mutant of KOBITO1 in Arabidopsis (Arabidopsis thaliana). The kob1-3 mutation leads to the formation of stomata clusters in the erl1 erl2 background but not in the wild type. Cell-to-cell mobility assays demonstrated an increase in intercellular protein trafficking in kob1-3, including increased diffusion of SPEECHLESS, suggesting that the formation of stomata clusters is due to an escape of cell fate-specifying factors from stomatal lineage cells. While plasmodesmatal permeability is increased in kob1-3, we did not detect drastic changes in callose accumulation at the neck regions of the plasmodesmata. Previously, KOBITO1 has been proposed to function in cellulose biosynthesis. Our data demonstrate that disruption of cellulose biosynthesis in the erl1 erl2 background does not lead to the formation of stomata clusters, indicating that cellulose biosynthesis is not a major determining factor for regulating plasmodesmatal permeability. Analysis of KOBITO1 structure suggests that it is a glycosyltransferase-like protein. KOBITO1 might be involved in a carbohydrate metabolic pathway that is essential for both cellulose biosynthesis and the regulation of plasmodesmatal permeability.
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Shishkova S, Rost TL, Dubrovsky JG. Determinate root growth and meristem maintenance in angiosperms. ANNALS OF BOTANY 2008; 101:319-40. [PMID: 17954472 PMCID: PMC2701811 DOI: 10.1093/aob/mcm251] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2007] [Revised: 07/09/2007] [Accepted: 08/17/2007] [Indexed: 05/18/2023]
Abstract
BACKGROUND The difference between indeterminate and determinate growth in plants consists of the presence or absence of an active meristem in the fully developed organ. Determinate root growth implies that the root apical meristem (RAM) becomes exhausted. As a consequence, all cells in the root tip differentiate. This type of growth is widely found in roots of many angiosperm taxa and might have evolved as a developmental adaptation to water deficit (in desert Cactaceae), or low mineral content in the soil (proteoid roots in various taxa). SCOPE AND CONCLUSIONS This review considers the mechanisms of determinate root growth to better understand how the RAM is maintained, how it functions, and the cellular and genetic bases of these processes. The role of the quiescent centre in RAM maintenance and exhaustion will be analysed. During root ageing, the RAM becomes smaller and its organization changes; however, it remains unknown whether every root is truly determinate in the sense that its RAM becomes exhausted before senescence. We define two types of determinate growth: constitutive where determinacy is a natural part of root development; and non-constitutive where determinacy is induced usually by an environmental factor. Determinate root growth is proposed to include two phases: the indeterminate growth phase, when the RAM continuously produces new cells; and the termination growth phase, when cell production gradually decreases and eventually ceases. Finally, new concepts regarding stem cells and a stem cell niche are discussed to help comprehend how the meristem is maintained in a broad taxonomic context.
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Affiliation(s)
- S. Shishkova
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Apartado Postal 510-3, 62250, Cuernavaca, Morelos, Mexico
| | - T. L. Rost
- Section of Plant Biology, College of Biological Sciences, University of California, One Shields Avenue, Davis, CA 95616, USA
| | - J. G. Dubrovsky
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Apartado Postal 510-3, 62250, Cuernavaca, Morelos, Mexico
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13
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Nibau C, Gibbs DJ, Coates JC. Branching out in new directions: the control of root architecture by lateral root formation. THE NEW PHYTOLOGIST 2008; 179:595-614. [PMID: 18452506 DOI: 10.1111/j.1469-8137.2008.02472.x] [Citation(s) in RCA: 161] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Plant roots are required for the acquisition of water and nutrients, for responses to abiotic and biotic signals in the soil, and to anchor the plant in the ground. Controlling plant root architecture is a fundamental part of plant development and evolution, enabling a plant to respond to changing environmental conditions and allowing plants to survive in different ecological niches. Variations in the size, shape and surface area of plant root systems are brought about largely by variations in root branching. Much is known about how root branching is controlled both by intracellular signalling pathays and by environmental signals. Here, we will review this knowledge, with particular emphasis on recent advances in the field that open new and exciting areas of research.
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Affiliation(s)
| | | | - J C Coates
- School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK
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14
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Soler M, Serra O, Molinas M, Huguet G, Fluch S, Figueras M. A genomic approach to suberin biosynthesis and cork differentiation. PLANT PHYSIOLOGY 2007; 144:419-31. [PMID: 17351057 PMCID: PMC1913797 DOI: 10.1104/pp.106.094227] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2006] [Accepted: 03/02/2007] [Indexed: 05/14/2023]
Abstract
Cork (phellem) is a multilayered dead tissue protecting plant mature stems and roots and plant healing tissues from water loss and injuries. Cork cells are made impervious by the deposition of suberin onto cell walls. Although suberin deposition and cork formation are essential for survival of land plants, molecular studies have rarely been conducted on this tissue. Here, we address this question by combining suppression subtractive hybridization together with cDNA microarrays, using as a model the external bark of the cork tree (Quercus suber), from which bottle cork is obtained. A suppression subtractive hybridization library from cork tree bark was prepared containing 236 independent sequences; 69% showed significant homology to database sequences and they corresponded to 135 unique genes. Out of these genes, 43.5% were classified as the main pathways needed for cork biosynthesis. Furthermore, 19% could be related to regulatory functions. To identify genes more specifically required for suberin biosynthesis, cork expressed sequence tags were printed on a microarray and subsequently used to compare cork (phellem) to a non-suberin-producing tissue such as wood (xylem). Based on the results, a list of candidate genes relevant for cork was obtained. This list includes genes for the synthesis, transport, and polymerization of suberin monomers such as components of the fatty acid elongase complexes, ATP-binding cassette transporters, and acyltransferases, among others. Moreover, a number of regulatory genes induced in cork have been identified, including MYB, No-Apical-Meristem, and WRKY transcription factors with putative functions in meristem identity and cork differentiation.
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Affiliation(s)
- Marçal Soler
- Laboratori del suro, Department of Biology, Facultat de Ciències, Universitat de Girona, Campus Montilivi s/n, 17071 Girona, Spain
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Beisson F, Li Y, Bonaventure G, Pollard M, Ohlrogge JB. The acyltransferase GPAT5 is required for the synthesis of suberin in seed coat and root of Arabidopsis. THE PLANT CELL 2007; 19:351-68. [PMID: 17259262 PMCID: PMC1820950 DOI: 10.1105/tpc.106.048033] [Citation(s) in RCA: 285] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2006] [Revised: 11/30/2006] [Accepted: 01/03/2007] [Indexed: 05/13/2023]
Abstract
Suberin and cutin are fatty acid- and glycerol-based plant polymers that act as pathogen barriers and function in the control of water and solute transport. However, despite important physiological roles, their biosynthetic pathways, including the acyl transfer reactions, remain hypothetical. We report the characterization of two suberin mutants (gpat5-1 and gpat5-2) of Arabidopsis thaliana GPAT5, encoding a protein with acyl-CoA:glycerol-3-phosphate acyltransferase activity. RT-PCR and beta-glucuronidase-promoter fusion analyses demonstrated GPAT5 expression in seed coat, root, hypocotyl, and anther. The gpat5 plants showed a 50% decrease in aliphatic suberin in young roots and produced seed coats with a severalfold reduction in very long chain dicarboxylic acid and omega-hydroxy fatty acids typical of suberin but no change in the composition or content of membrane or storage glycerolipids or surface waxes. Consistent with their altered suberin, seed coats of gpat5 mutants had a steep increase in permeability to tetrazolium salts compared with wild-type seed coats. Furthermore, the germination rate of gpat5 seeds under high salt was reduced, and gpat5 seedlings had lower tolerance to salt stress. These results provide evidence for a critical role of GPAT5 in polyester biogenesis in seed coats and roots and for the importance of lipid polymer structures in the normal function of these organs.
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Affiliation(s)
- Fred Beisson
- Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA
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16
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Cernac A, Andre C, Hoffmann-Benning S, Benning C. WRI1 is required for seed germination and seedling establishment. PLANT PHYSIOLOGY 2006; 141:745-57. [PMID: 16632590 PMCID: PMC1475460 DOI: 10.1104/pp.106.079574] [Citation(s) in RCA: 94] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Storage compound accumulation during seed development prepares the next generation of plants for survival. Therefore, processes involved in the regulation and synthesis of storage compound accumulation during seed development bear relevance to germination and seedling establishment. The wrinkled1 (wri1) mutant of Arabidopsis (Arabidopsis thaliana) is impaired in seed oil accumulation. The WRI1 gene encodes an APETALA2/ethylene-responsive element-binding protein transcription factor involved in the control of metabolism, particularly glycolysis, in the developing seeds. Here we investigate the role of this regulatory factor in seed germination and seedling establishment by comparing the wri1-1 mutant, transgenic lines expressing the WRI1 wild-type cDNA in the wri1-1 mutant background, and the wild type. Plants altered in the expression of the WRI1 gene showed different germination responses to the growth factor abscisic acid (ABA), sugars, and fatty acids provided in the medium. Germination of the mutant was more sensitive to ABA, sugars, and osmolites, an effect that was alleviated by increased WRI1 expression in transgenic lines. The expression of ABA-responsive genes AtEM6 and ABA-insensitive 3 (ABI3) was increased in the wri1-1 mutant. Double-mutant analysis between abi3-3 and wri1-1 suggested that WRI1 and ABI3, a transcription factor mediating ABA responses in seeds, act in parallel pathways. Addition of 2-deoxyglucose inhibited seed germination, but did so less in lines overexpressing WRI1. Seedling establishment was decreased in the wri1-1 mutant but could be alleviated by sucrose. Apart from a possible signaling role in germination, sugars in the medium were required as building blocks and energy supply during wri1-1 seedling establishment.
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Affiliation(s)
- Alex Cernac
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, 48824, USA
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Brocard-Gifford I, Lynch TJ, Garcia ME, Malhotra B, Finkelstein RR. The Arabidopsis thaliana ABSCISIC ACID-INSENSITIVE8 encodes a novel protein mediating abscisic acid and sugar responses essential for growth. THE PLANT CELL 2004; 16:406-21. [PMID: 14742875 PMCID: PMC341913 DOI: 10.1105/tpc.018077] [Citation(s) in RCA: 99] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2003] [Accepted: 12/19/2003] [Indexed: 05/18/2023]
Abstract
Abscisic acid (ABA) regulates many aspects of plant growth and development, yet many ABA response mutants present only subtle phenotypic defects, especially in the absence of stress. By contrast, the ABA-insensitive8 (abi8) mutant, isolated on the basis of ABA-resistant germination, also displays severely stunted growth, defective stomatal regulation, altered ABA-responsive gene expression, delayed flowering, and male sterility. The stunted growth of the mutant is not rescued by gibberellin, brassinosteroid, or indoleacetic acid application and is not attributable to excessive ethylene response, but supplementing the medium with Glc improves viability and root growth. In addition to exhibiting Glc-dependent growth, reflecting decreased expression of sugar-mobilizing enzymes, abi8 mutants are resistant to Glc levels that induce developmental arrest of wild-type seedlings. Studies of genetic interactions demonstrate that ABA hypersensitivity conferred by the ABA-hypersensitive1 mutation or overexpression of ABI3 or ABI5 does not suppress the dwarfing and Glc dependence caused by abi8 but partially suppresses ABA-resistant germination. By contrast, the ABA-resistant germination of abi8 is epistatic to the hypersensitivity caused by ethylene-insensitive2 (ein2) and ein3 mutations, yet ABI8 appears to act in a distinct Glc response pathway from these EIN loci. ABI8 encodes a protein with no domains of known function but belongs to a small plant-specific protein family. Database searches indicate that it is allelic to two dwarf mutants, elongation defective1 and kobito1, previously shown to disrupt cell elongation, cellulose synthesis, vascular differentiation, and root meristem maintenance. The cell wall defects appear to be a secondary effect of the mutations because Glc treatment restores root growth and vascular differentiation but not cell elongation. Although the ABI8 transcript accumulates in all tested plant organs in both wild-type and ABA response mutants, an ABI8-beta-glucuronidase fusion protein is localized primarily to the elongation zone of roots, suggesting substantial post-transcriptional regulation of ABI8 accumulation. This localization pattern is sufficient to complement the mutation, indicating that ABI8 acts either at very low concentrations or over long distances within the plant body.
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Affiliation(s)
- Inès Brocard-Gifford
- Department of Molecular, Cellular and Developmental Biology, University of California at Santa Barbara, Santa Barbara, California 93106, USA
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Lertpiriyapong K, Sung ZR. The elongation defective1 mutant of Arabidopsis is impaired in the gene encoding a serine-rich secreted protein. PLANT MOLECULAR BIOLOGY 2003; 53:581-95. [PMID: 15010620 DOI: 10.1023/b:plan.0000019067.05185.d6] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Coordinated cell growth and differentiation is crucial for the development of higher plants. Using the elongation defective 1-1 (eld1-1) mutant, we cloned the ELD1 gene, which encodes a serine-rich protein. Genes homologous to ELD1 can be found in plants, including Arabidopsis, rice, and tobacco, but not in other organisms. Using reverse genetics, we identified a new allele, eld1-2, which is phenotypically indistinguishable from eld1-1, but does not produce a detectable ELD1 transcript. The ELD1 gene sequence is the same as that of the KOBITO1 sequence. However, the kob1 mutants display weak phenotype relative to the two eld1 mutants, which are likely null alleles. KOB1 was reported to be a membrane protein involved in cellulose synthesis. However, based on ELD1-GFP localization in plasmolyzed cells, we found that ELD1 is localized to the cell wall/extracellular matrix, rather than the membrane. Thus, ELD1/KOB1 is a secreted protein involved in promoting cell growth. To investigate the relationship between ELD1 and Arabidopsis genes with high sequence similarity, we analyzed the possible subcellular location of their proteins as well as their amino acid sequence. The ELD1-related proteins in Arabidopsis were predicted to be localized to subcellular compartments different from that of ELD1. Thus, ELD1 is likely to be functionally distinct from related Arabidopsis genes. These results suggest that ELD1 is a single-copy gene which belongs to a small family of plant-specific genes with diverse function.
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Affiliation(s)
- Kvin Lertpiriyapong
- Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
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19
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Abstract
The internal programs of plant development are informed in a profound way by environmental light conditions. This review summarizes the contribution of repressor proteins to the light-signaling machinery during seedling development, and discusses the integration of repressors with other, positively acting, light-signaling pathways and auxin and brassinosteroid hormone-signaling pathways. The main focus is placed on the mode of action of the COP/DET/FUS proteins, which were first identified in Arabidopsis but are now emerging in other plants. Their role in regulating protein turnover through ubiquitination is reviewed in light of parallel ongoing investigations of COP/DET/FUS homologues in metazoans and fungi.
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Affiliation(s)
- Tae-Houn Kim
- Department of Botany, The University of Tennessee, Knoxville 37996, USA
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Avsian-Kretchmer O, Cheng JC, Chen L, Moctezuma E, Sung ZR. Indole acetic acid distribution coincides with vascular differentiation pattern during Arabidopsis leaf ontogeny. PLANT PHYSIOLOGY 2002; 130:199-209. [PMID: 12226500 PMCID: PMC166553 DOI: 10.1104/pp.003228] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2002] [Revised: 05/17/2002] [Accepted: 05/28/2002] [Indexed: 05/18/2023]
Abstract
We used an anti-indole acetic acid (IAA or auxin) monoclonal antibody-based immunocytochemical procedure to monitor IAA level in Arabidopsis tissues. Using immunocytochemistry and the IAA-driven beta-glucuronidase (GUS) activity of Aux/IAA promoter::GUS constructs to detect IAA distribution, we investigated the role of polar auxin transport in vascular differentiation during leaf development in Arabidopsis. We found that shoot apical cells contain high levels of IAA and that IAA decreases as leaf primordia expand. However, seedlings grown in the presence of IAA transport inhibitors showed very low IAA signal in the shoot apical meristem (SAM) and the youngest pair of leaf primordia. Older leaf primordia accumulate IAA in the leaf tip in the presence or absence of IAA transport inhibition. We propose that the IAA in the SAM and the youngest pair of leaf primordia is transported from outside sources, perhaps the cotyledons, which accumulate more IAA in the presence than in the absence of transport inhibition. The temporal and spatial pattern of IAA localization in the shoot apex indicates a change in IAA source during leaf ontogeny that would influence flow direction and, consequently, the direction of vascular differentiation. The IAA production and transport pattern suggested by our results could explain the venation pattern, and the vascular hypertrophy caused by IAA transport inhibition. An outside IAA source for the SAM supports the notion that IAA transport and procambium differentiation dictate phyllotaxy and organogenesis.
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Affiliation(s)
- Orna Avsian-Kretchmer
- Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, California 94720, USA
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Affiliation(s)
- Christiane Nawrath
- Department of Biology, Unit of Plant Biology, University of Fribourg, Pérolles, Switzerland; phone:0041-(0)26-300 88 38; fax: 0041-(0)26-300 97 40;
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Abstract
It has not been possible to isolate a number of crucial enzymes involved in plant cell wall synthesis. Recent progress in identifying some of these steps has been overcome by the isolation of mutants defective in various aspects of cell wall synthesis and the use of these mutants to identify the corresponding genes. Secondary cell walls offer numerous advantages for genetic analysis of plant cell walls. It is possible to recover very severe mutants since the plants remain viable. In addition, although variation in secondary cell wall composition occurs between different species and between different cell types, the composition of the walls is relatively simple compared to primary cell walls. Despite these advantages, relatively few secondary cell wall mutations have been described to date. The only secondary cell wall mutations characterised to date, in which the basis of the abnormality is known, have defects in either the control of secondary cell wall deposition or secondary cell wall cellulose or lignin biosynthesis. These mutants have, however, provided essential information on secondary cell wall biosynthesis.
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Affiliation(s)
- S R Turner
- University of Manchester, School of Biological Science, UK.
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Baluska F, Jasik J, Edelmann HG, Salajová T, Volkmann D. Latrunculin B-induced plant dwarfism: Plant cell elongation is F-actin-dependent. Dev Biol 2001; 231:113-24. [PMID: 11180956 DOI: 10.1006/dbio.2000.0115] [Citation(s) in RCA: 122] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Marine macrolides latrunculins are highly specific toxins which effectively depolymerize actin filaments (generally F-actin) in all eukaryotic cells. We show that latrunculin B is effective on diverse cell types in higher plants and describe the use of this drug in probing F-actin-dependent growth and in plant development-related processes. In contrast to other eukaryotic organisms, cell divisions occurs in plant cells devoid of all actin filaments. However, the alignment of the division planes is often distorted. In addition to cell division, postembryonic development and morphogenesis also continue in the absence of F-actin. These experimental data suggest that F-actin is of little importance in the morphogenesis of higher plants, and that plants can develop more or less normally without F-actin. In contrast, F-actin turns out to be essential for cell elongation. When latrunculin B was added during germination, morphologically normal Arabidopsis and rye seedlings developed but, as a result of the absence of cell elongation, these were stunted, resembling either genetic dwarfs or environmental bonsai plants. In conclusion, F-actin is essential for the plant cell elongation, while this F-actin-dependent cell elongation is not an essential feature of plant-specific developmental programs.
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Affiliation(s)
- F Baluska
- Zellbiologie der Pflanzen, Botanisches Institut, Rheinisch Friedrich-Wilhems-Universität Bonn, D-53115, Germany.
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