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For: Warkentin M, Badeau R, Hopkins J, Thorne RE. Dark progression reveals slow timescales for radiation damage between T = 180 and 240 K. Acta Crystallogr D Biol Crystallogr 2011;67:792-803. [PMID: 21904032 PMCID: PMC3169314 DOI: 10.1107/s0907444911027600] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2011] [Accepted: 07/09/2011] [Indexed: 11/11/2022]
Number Cited by Other Article(s)
1
Du S, Wankowicz SA, Yabukarski F, Doukov T, Herschlag D, Fraser JS. Refinement of multiconformer ensemble models from multi-temperature X-ray diffraction data. Methods Enzymol 2023;688:223-254. [PMID: 37748828 PMCID: PMC10637719 DOI: 10.1016/bs.mie.2023.06.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/27/2023]
2
Du S, Wankowicz SA, Yabukarski F, Doukov T, Herschlag D, Fraser JS. Refinement of Multiconformer Ensemble Models from Multi-temperature X-ray Diffraction Data. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.05.05.539620. [PMID: 37205593 PMCID: PMC10187334 DOI: 10.1101/2023.05.05.539620] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
3
Doukov T, Herschlag D, Yabukarski F. Obtaining anomalous and ensemble information from protein crystals from 220 K up to physiological temperatures. Acta Crystallogr D Struct Biol 2023;79:212-223. [PMID: 36876431 PMCID: PMC9986799 DOI: 10.1107/s205979832300089x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Accepted: 01/31/2023] [Indexed: 03/01/2023]  Open
4
Thorne RE. Determining biomolecular structures near room temperature using X-ray crystallography: concepts, methods and future optimization. Acta Crystallogr D Struct Biol 2023;79:78-94. [PMID: 36601809 PMCID: PMC9815097 DOI: 10.1107/s2059798322011652] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Accepted: 12/04/2022] [Indexed: 01/05/2023]  Open
5
Yabukarski F, Doukov T, Mokhtari DA, Du S, Herschlag D. Evaluating the impact of X-ray damage on conformational heterogeneity in room-temperature (277 K) and cryo-cooled protein crystals. Acta Crystallogr D Struct Biol 2022;78:945-963. [PMID: 35916220 PMCID: PMC9344472 DOI: 10.1107/s2059798322005939] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Accepted: 06/02/2022] [Indexed: 11/10/2022]  Open
6
Reducing electron beam damage through alternative STEM scanning strategies, Part II: Attempt towards an empirical model describing the damage process. Ultramicroscopy 2022;240:113568. [PMID: 35716488 DOI: 10.1016/j.ultramic.2022.113568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 09/28/2021] [Accepted: 06/03/2022] [Indexed: 11/22/2022]
7
Macromolecular room temperature crystallography. Q Rev Biophys 2021;54:e1. [PMID: 33413726 DOI: 10.1017/s0033583520000128] [Citation(s) in RCA: 49] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
8
Doukov T, Herschlag D, Yabukarski F. Instrumentation and experimental procedures for robust collection of X-ray diffraction data from protein crystals across physiological temperatures. J Appl Crystallogr 2020;53:1493-1501. [PMID: 33312102 PMCID: PMC7710493 DOI: 10.1107/s1600576720013503] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Accepted: 10/08/2020] [Indexed: 11/10/2022]  Open
9
Liang M, Harder R, Robinson I. Radiation-driven rotational motion of nanoparticles. JOURNAL OF SYNCHROTRON RADIATION 2018;25:757-762. [PMID: 29714185 PMCID: PMC5929357 DOI: 10.1107/s1600577518005039] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2017] [Accepted: 03/28/2018] [Indexed: 05/25/2023]
10
Warkentin MA, Atakisi H, Hopkins JB, Walko D, Thorne RE. Lifetimes and spatio-temporal response of protein crystals in intense X-ray microbeams. IUCRJ 2017;4:785-794. [PMID: 29123681 PMCID: PMC5668864 DOI: 10.1107/s2052252517013495] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2017] [Accepted: 09/20/2017] [Indexed: 05/22/2023]
11
Martin-Garcia JM, Conrad CE, Nelson G, Stander N, Zatsepin NA, Zook J, Zhu L, Geiger J, Chun E, Kissick D, Hilgart MC, Ogata C, Ishchenko A, Nagaratnam N, Roy-Chowdhury S, Coe J, Subramanian G, Schaffer A, James D, Ketwala G, Venugopalan N, Xu S, Corcoran S, Ferguson D, Weierstall U, Spence JCH, Cherezov V, Fromme P, Fischetti RF, Liu W. Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation. IUCRJ 2017;4:439-454. [PMID: 28875031 PMCID: PMC5571807 DOI: 10.1107/s205225251700570x] [Citation(s) in RCA: 105] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2017] [Accepted: 04/13/2017] [Indexed: 05/17/2023]
12
Gruner SM, Lattman EE. Biostructural Science Inspired by Next-Generation X-Ray Sources. Annu Rev Biophys 2015;44:33-51. [PMID: 25747590 DOI: 10.1146/annurev-biophys-060414-033813] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
13
Warkentin M, Hopkins JB, Haber JB, Blaha G, Thorne RE. Temperature-dependent radiation sensitivity and order of 70S ribosome crystals. ACTA CRYSTALLOGRAPHICA. SECTION D, BIOLOGICAL CRYSTALLOGRAPHY 2014;70:2890-6. [PMID: 25372680 PMCID: PMC4220972 DOI: 10.1107/s1399004714017672] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2013] [Accepted: 08/01/2014] [Indexed: 11/10/2022]
14
Stellato F, Oberthür D, Liang M, Bean R, Gati C, Yefanov O, Barty A, Burkhardt A, Fischer P, Galli L, Kirian RA, Meyer J, Panneerselvam S, Yoon CH, Chervinskii F, Speller E, White TA, Betzel C, Meents A, Chapman HN. Room-temperature macromolecular serial crystallography using synchrotron radiation. IUCRJ 2014;1:204-12. [PMID: 25075341 PMCID: PMC4107920 DOI: 10.1107/s2052252514010070] [Citation(s) in RCA: 182] [Impact Index Per Article: 18.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2013] [Accepted: 05/05/2014] [Indexed: 05/18/2023]
15
Nave C. Matching X-ray beam and detector properties to protein crystals of different perfection. JOURNAL OF SYNCHROTRON RADIATION 2014;21:537-46. [PMID: 24763643 PMCID: PMC3998814 DOI: 10.1107/s1600577514003609] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2013] [Accepted: 02/17/2014] [Indexed: 05/20/2023]
16
Owen RL, Paterson N, Axford D, Aishima J, Schulze-Briese C, Ren J, Fry EE, Stuart DI, Evans G. Exploiting fast detectors to enter a new dimension in room-temperature crystallography. ACTA CRYSTALLOGRAPHICA. SECTION D, BIOLOGICAL CRYSTALLOGRAPHY 2014;70:1248-56. [PMID: 24816094 PMCID: PMC4014120 DOI: 10.1107/s1399004714005379] [Citation(s) in RCA: 69] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/25/2013] [Accepted: 03/09/2014] [Indexed: 11/11/2022]
17
Davis KM, Kosheleva I, Henning RW, Seidler GT, Pushkar Y. Kinetic modeling of the X-ray-induced damage to a metalloprotein. J Phys Chem B 2013;117:9161-9. [PMID: 23815809 DOI: 10.1021/jp403654n] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
18
Finfrock YZ, Stern EA, Alkire RW, Kas JJ, Evans-Lutterodt K, Stein A, Duke N, Lazarski K, Joachimiak A. Mitigation of X-ray damage in macromolecular crystallography by submicrometre line focusing. ACTA CRYSTALLOGRAPHICA SECTION D: BIOLOGICAL CRYSTALLOGRAPHY 2013;69:1463-9. [PMID: 23897469 DOI: 10.1107/s0907444913009335] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2012] [Accepted: 04/06/2013] [Indexed: 11/10/2022]
19
Leal RMF, Bourenkov G, Russi S, Popov AN. A survey of global radiation damage to 15 different protein crystal types at room temperature: a new decay model. JOURNAL OF SYNCHROTRON RADIATION 2013;20:14-22. [PMID: 23254652 PMCID: PMC3943537 DOI: 10.1107/s0909049512049114] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2012] [Accepted: 11/29/2012] [Indexed: 05/11/2023]
20
Garman EF, Weik M. Radiation damage to biological macromolecules: some answers and more questions. JOURNAL OF SYNCHROTRON RADIATION 2013;20:1-6. [PMID: 23254650 DOI: 10.1107/s0909049512050418] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2012] [Accepted: 12/11/2012] [Indexed: 06/01/2023]
21
Warkentin M, Hopkins JB, Badeau R, Mulichak AM, Keefe LJ, Thorne RE. Global radiation damage: temperature dependence, time dependence and how to outrun it. JOURNAL OF SYNCHROTRON RADIATION 2013;20:7-13. [PMID: 23254651 PMCID: PMC3526918 DOI: 10.1107/s0909049512048303] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2012] [Accepted: 11/25/2012] [Indexed: 05/22/2023]
22
Smith JL, Fischetti RF, Yamamoto M. Micro-crystallography comes of age. Curr Opin Struct Biol 2012;22:602-12. [PMID: 23021872 PMCID: PMC3478446 DOI: 10.1016/j.sbi.2012.09.001] [Citation(s) in RCA: 114] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2012] [Revised: 08/31/2012] [Accepted: 09/03/2012] [Indexed: 11/24/2022]
23
Warkentin M, Badeau R, Hopkins JB, Thorne RE. Spatial distribution of radiation damage to crystalline proteins at 25-300 K. ACTA CRYSTALLOGRAPHICA. SECTION D, BIOLOGICAL CRYSTALLOGRAPHY 2012;68:1108-17. [PMID: 22948911 PMCID: PMC3489100 DOI: 10.1107/s0907444912021361] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2012] [Accepted: 05/10/2012] [Indexed: 11/11/2022]
24
Owen RL, Axford D, Nettleship JE, Owens RJ, Robinson JI, Morgan AW, Doré AS, Lebon G, Tate CG, Fry EE, Ren J, Stuart DI, Evans G. Outrunning free radicals in room-temperature macromolecular crystallography. ACTA CRYSTALLOGRAPHICA. SECTION D, BIOLOGICAL CRYSTALLOGRAPHY 2012;68:810-8. [PMID: 22751666 PMCID: PMC4791751 DOI: 10.1107/s0907444912012553] [Citation(s) in RCA: 76] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/26/2012] [Accepted: 03/22/2012] [Indexed: 11/13/2022]
25
Warkentin M, Badeau R, Hopkins JB, Mulichak AM, Keefe LJ, Thorne RE. Global radiation damage at 300 and 260 K with dose rates approaching 1 MGy s⁻¹. ACTA CRYSTALLOGRAPHICA SECTION D: BIOLOGICAL CRYSTALLOGRAPHY 2012;68:124-33. [PMID: 22281741 DOI: 10.1107/s0907444911052085] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2011] [Accepted: 12/02/2011] [Indexed: 11/10/2022]
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