1
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Cheranyova AM, Zelenkov LE, Baykov SV, Izotova YA, Ivanov DM, Bokach NA, Kukushkin VY. Intermolecular Metal-Involving Pnictogen Bonding: The Case of σ-(Sb III)-Hole···d z2[Pt II] Interaction. Inorg Chem 2024. [PMID: 39066736 DOI: 10.1021/acs.inorgchem.4c01570] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2024]
Abstract
Cocrystallizations of trans-[PtX'2(NCNR2)2] (R2 = Me2, X' = Cl 1a, Br 1b, I 1c; R2 = (CH2)5, X' = I 2c) with SbX3 (X = Cl, Br, I) gave 1:2 cocrystals 1a·2SbCl3, 1b·2SbBr3, 1c·2SbCl3, 1c·2SbBr3, 1c·2SbI3, and 2c·2SbI3. In all six X-ray structures, the association of the molecular coformers is achieved mainly by SbIII···dz2[PtII] metal-involving intermolecular pnictogen bonding. Density functional theory (DFT) calculations (based on experimentally determined geometries) using both gas-phase and solid-state approximations revealed that a σ-(Sb)-hole interacts with an area of negative potential associated with the dz2-orbital of the positively charged platinum(II) sites, thus forming a pnictogen bond whose energy falls in the range between -7.3 and -16.9 kcal/mol.
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Affiliation(s)
- Anna M Cheranyova
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Lev E Zelenkov
- Qingdao Innovation and Development Center, Harbin Engineering University, Qingdao 266000, Shandong, China
| | - Sergey V Baykov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Yulia A Izotova
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Daniil M Ivanov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Nadezhda A Bokach
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Vadim Yu Kukushkin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
- Institute of Chemistry and Pharmaceutical Technologies, Altai State University, Barnaul 656049, Russian Federation
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2
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Kashina MV, Luzyanin KV, Dar'in DV, Bezzubov SI, Kinzhalov MA. Phosphorescent Cyclometalated Palladium(II) and Platinum(II) Complexes Derived from Diaminocarbene Precursors. Inorg Chem 2024; 63:5315-5319. [PMID: 38470336 DOI: 10.1021/acs.inorgchem.3c03346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
Abstract
Metal-mediated self-assembly of isocyanides and methyl 4-aminopyrimidine-5-carboxylate leads to luminescent PdII and PtII complexes featuring C,N-cyclometalated acyclic diaminocarbene (ADC) ligands. The solid-state luminescent properties of these diaminocarbene derivatives are attributed to their triplet-state metal/metal-to-ligand charge-transfer (3MMLCT) nature, which is driven by attractive intermolecular M···M interactions further reinforced by the intramolecular π-π interactions even in the structure of the Pd compound, which is the first Pd-ADC phosphor reported.
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Affiliation(s)
- Maria V Kashina
- St. Petersburg University, 7-9 Universitetskaya Nab., St. Petersburg 199034, Russian Federation
| | - Konstantin V Luzyanin
- Department of Chemistry, University of Liverpool, Crown Street, Liverpool L69 7ZD, United Kingdom
| | - Dmitry V Dar'in
- St. Petersburg University, 7-9 Universitetskaya Nab., St. Petersburg 199034, Russian Federation
| | - Stanislav I Bezzubov
- Kurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, Leninskii Prosp. 31, Moscow 119991, Russian Federation
| | - Mikhail A Kinzhalov
- St. Petersburg University, 7-9 Universitetskaya Nab., St. Petersburg 199034, Russian Federation
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3
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Radzhabov AD, Ledneva AI, Soldatova NS, Fedorova II, Ivanov DM, Ivanov AA, Yusubov MS, Kukushkin VY, Postnikov PS. Halogen Bond-Involving Self-Assembly of Iodonium Carboxylates: Adding a Dimension to Supramolecular Architecture. Int J Mol Sci 2023; 24:14642. [PMID: 37834088 PMCID: PMC10573078 DOI: 10.3390/ijms241914642] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 09/21/2023] [Accepted: 09/25/2023] [Indexed: 10/15/2023] Open
Abstract
We designed 0D, 1D, and 2D supramolecular assemblies made of diaryliodonium salts (functioning as double σ-hole donors) and carboxylates (as σ-hole acceptors). The association was based on two charge-supported halogen bonds (XB), which occurred between IIII sites of the iodonium cations and the carboxylate anions. The sequential introduction of the carboxylic groups in the aryl ring of the benzoic acid added a dimension to the 0D supramolecular organization of the benzoate, which furnished 1D-chained and 2D-layered structures when terephthalate and trimesate anions, correspondingly, were applied as XB acceptors. The structure-directing XB were studied using DFT calculations under periodic boundary conditions and were followed by the one-electron-potential analysis and the Bader atoms-in-molecules topological analysis of electron density. These theoretical methods confirmed the existence of the XB and verified the philicities of the interaction partners in the designed solid-state structures.
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Affiliation(s)
- Amirbek D. Radzhabov
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, Tomsk 634050, Russia (N.S.S.); (D.M.I.); (M.S.Y.)
| | - Alyona I. Ledneva
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, Tomsk 634050, Russia (N.S.S.); (D.M.I.); (M.S.Y.)
| | - Natalia S. Soldatova
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, Tomsk 634050, Russia (N.S.S.); (D.M.I.); (M.S.Y.)
| | - Irina I. Fedorova
- Institute of Chemistry, Saint Petersburg State University, Saint Petersburg 199034, Russia (V.Y.K.)
- Department of Mathematics and Mechanics, Saint Petersburg State University, Saint Petersburg 199034, Russia
| | - Daniil M. Ivanov
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, Tomsk 634050, Russia (N.S.S.); (D.M.I.); (M.S.Y.)
- Institute of Chemistry, Saint Petersburg State University, Saint Petersburg 199034, Russia (V.Y.K.)
| | - Alexey A. Ivanov
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, Tomsk 634050, Russia (N.S.S.); (D.M.I.); (M.S.Y.)
| | - Mekhman S. Yusubov
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, Tomsk 634050, Russia (N.S.S.); (D.M.I.); (M.S.Y.)
| | - Vadim Yu. Kukushkin
- Institute of Chemistry, Saint Petersburg State University, Saint Petersburg 199034, Russia (V.Y.K.)
- Institute of Chemistry and Pharmaceutical Technologies, Altai State University, Barnaul 656049, Russia
| | - Pavel S. Postnikov
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, Tomsk 634050, Russia (N.S.S.); (D.M.I.); (M.S.Y.)
- Department of Solid State Engineering, Institute of Chemical Technology, 16628 Prague, Czech Republic
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4
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Andreo L, Gomila RM, Priola E, Giordana A, Pantaleone S, Diana E, Mahmoudi G, Frontera A. Anion···Anion [AuI 4] -···[AuI 2] - Complex Trapped in the Solid State by Tetramethylammonium Cations. CRYSTAL GROWTH & DESIGN 2022; 22:6539-6544. [PMID: 36345385 PMCID: PMC9635596 DOI: 10.1021/acs.cgd.2c00749] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2022] [Revised: 09/01/2022] [Indexed: 05/24/2023]
Abstract
A discrete π-hole···σ-hole dimer is synthesized and X-ray characterized. It presents a perfect thumbtack geometry where the σ-hole of the linear [AuI2]- anion points to the π-hole located above the central Au-atom of the [AuI4]- anion. Such discrete π-hole···σ-hole dimers are unprecedented in literature, since all mixed-valence gold(I/III) iodide compounds reported to date form infinite ···([AuI4]-···[AuI2]-) n ·· chains in the solid state. If an excess of iodine is used for the synthesis, triiodide [I3]- ions are partially incorporated into the [AuI2]- sites, forming infinite chains. The nature of the anion···anion interaction has been studied considering two possibilities: (i) a π-hole coinage bond or (ii) σ-hole halogen bond using high-level density functional theory calculations, the quantum theory of atoms in molecules, and the noncovalent interaction plot index.
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Affiliation(s)
- Luca Andreo
- Department of Chemistry, Università degli Studi di Torino, Via Pietro Giuria 7, 10125 Torino, Italy
| | - Rosa M Gomila
- Department of Chemistry, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma de Mallorca (Baleares), Spain
| | - Emanuele Priola
- Department of Chemistry, Università degli Studi di Torino, Via Pietro Giuria 7, 10125 Torino, Italy
| | - Alessia Giordana
- Department of Chemistry, Università degli Studi di Torino, Via Pietro Giuria 7, 10125 Torino, Italy
| | - Stefano Pantaleone
- Department of Chemistry, Università degli Studi di Torino, Via Pietro Giuria 7, 10125 Torino, Italy
| | - Eliano Diana
- Department of Chemistry, Università degli Studi di Torino, Via Pietro Giuria 7, 10125 Torino, Italy
| | - Ghodrat Mahmoudi
- Department of Chemistry, Faculty of Science, University of Maragheh, Maragheh 83111-55181, Iran
| | - Antonio Frontera
- Department of Chemistry, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma de Mallorca (Baleares), Spain
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5
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Sokolova E, Kinzhalov MA, Smirnov AS, Cheranyova AM, Ivanov DM, Kukushkin VY, Bokach NA. Polymorph-Dependent Phosphorescence of Cyclometalated Platinum(II) Complexes and Its Relation to Non-covalent Interactions. ACS OMEGA 2022; 7:34454-34462. [PMID: 36188282 PMCID: PMC9520548 DOI: 10.1021/acsomega.2c04110] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 08/31/2022] [Indexed: 06/16/2023]
Abstract
Cyclometalated platinum(II) complexes [Pt(ppy)Cl(CNAr)] (ppy = 2-phenylpyridinato-C2,N; Ar = C6H4-2-I 1, C6H4-4-I 2, C6H3-2-F-4-I 3, and C6H3-2,4-I2 4) bearing ancillary isocyanide ligands were obtained by the bridge-splitting reaction between the dimer [Pt(ppy)(μ-Cl)]2 and 2 equiv any one of the corresponding CNAr. Complex 2 was crystallized in two polymorphic forms, namely, 2 I and 2 II, exhibiting green (emission quantum yield of 0.5%) and orange (emission quantum yield of 12%) phosphorescence, respectively. Structure-directing non-covalent contacts in these polymorphs were verified by a combination of experimental (X-ray diffraction) and theoretical methods (NCIplot analysis, combined electron localization function (ELF), and Bader quantum theory of atoms in molecules (QTAIM analysis)). A noticeable difference in the spectrum of non-covalent interactions of 2 I and 2 II is seen in the Pt···Pt interactions in 2 II and absence of these metallophilic contacts in 2 I. The other solid luminophores, namely, 1, 3 I-II, 4, and 4·CHCl3, exhibit green luminescence; their structures include intermolecular C-I···Cl-Pt halogen bonds as the structure-directing interactions. Crystals of 1, 2 I, 3 I, 3 II, 4, and 4·CHCl3 demonstrated a reversible mechanochromic color change achieved by mechanical grinding (green to orange) and solvent adsorption (orange to green).
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Affiliation(s)
- Elina
V. Sokolova
- Saint
Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Mikhail A. Kinzhalov
- Saint
Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
- Research
School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, Tomsk 634050, Russian
Federation
| | - Andrey S. Smirnov
- Saint
Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Anna M. Cheranyova
- Saint
Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Daniil M. Ivanov
- Saint
Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
- Research
School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, Tomsk 634050, Russian
Federation
| | - Vadim Yu. Kukushkin
- Saint
Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
- Institute
of Chemistry and Pharmaceutical Technologies, Altai State University, Barnaul 656049, Russian Federation
| | - Nadezhda A. Bokach
- Saint
Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
- Research
School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, Tomsk 634050, Russian
Federation
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6
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Aliyarova IS, Tupikina EY, Soldatova NS, Ivanov DM, Postnikov PS, Yusubov M, Kukushkin VY. Halogen Bonding Involving Gold Nucleophiles in Different Oxidation States. Inorg Chem 2022; 61:15398-15407. [PMID: 36137295 DOI: 10.1021/acs.inorgchem.2c01858] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A single-crystal X-ray diffraction (XRD) study of diaryliodonium tetrachloroaurates (or, in the recent terminology, tetrachloridoaurates), [(p-XC6H4)2I][AuCl4] (X = Cl, 1; Br, 2), was performed for 1 (the structure is denoted as 1a to show similarity with the isomorphic structure 2a) and two polymorphs─2a (obtained from MeOH) and 2b (from 1,2-C2H4Cl2). Examination of the XRD data for these three structures revealed 2-center C-X···AuIII (X = Cl and Br) and 3-center bifurcated C-Br···(Cl-Au) halogen bonding (abbreviated as XB) between the p-Cl or p-Br atoms of the diaryliodonium cations and the gold(III) atom of [AuCl4]-. The noncovalent nature of AuIII-involving interactions, the nucleophilicity of the gold(III) atoms, and the electrophilic role of p-X atoms of the diaryliodonium cations in the XBs were studied by a set of complementary computational methods. Combined experimental and theoretical studies allowed the recognition of the d-nucleophilicity of the [d8AuIII] atom which, regardless of its rather substantial formal 3+ charge, can function as a d-nucleophilic partner of XB. This conclusion was also supported by theoretical calculations performed for the structures' refcodes BINXOM and ICSD 62511; the obtained data verified the nucleophilicity of AuIII toward a K+ ions or a σ-(Cl)-hole, respectively. All our results, together with consideration of relevant literature, indicate that gold atoms in the three oxidation states (0, I, and even III) exhibit nucleophilicity in XBs.
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Affiliation(s)
- Irina S Aliyarova
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation.,Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, Tomsk 634034, Russian Federation
| | - Elena Yu Tupikina
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Natalia S Soldatova
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, Tomsk 634034, Russian Federation
| | - Daniil M Ivanov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation.,Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, Tomsk 634034, Russian Federation
| | - Pavel S Postnikov
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, Tomsk 634034, Russian Federation.,Department of Solid State Engineering, Institute of Chemical Technology, Prague 16628, Czech Republic
| | - Mekhman Yusubov
- Research School of Chemistry and Applied Biomedical Sciences, Tomsk Polytechnic University, Tomsk 634034, Russian Federation
| | - Vadim Yu Kukushkin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation.,Institute of Chemistry and Pharmaceutical Technologies, Altai State University, 656049 Barnaul, Russian Federation
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7
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Abstract
Osme bonds have been recently defined as the attractive interaction between an element of group 8 acting as an electrophile and any atom or group of atoms acting as a nucleophile. To date, the known examples of osme bonds in X-ray structures involve mostly the highly reactive OsO4 and amines and amine oxides. In this work, evidence supporting the existence of osme bonds in osmium(VI) derivatives is reported. In particular, nitrido-osmium(VI) complexes that present square-pyramidal geometries are well disposed to participate in osme bonds opposite to the Os≡N bond. By using a combination of experimental and theoretical results, the existence and importance of this new class of σ-hole interactions is demonstrated in the solid state of several nitrido-osmium(VI) derivatives.
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8
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Bartashevich EV, Mukhitdinova SE, Klyuev IV, Tsirelson VG. Can We Merge the Weak and Strong Tetrel Bonds? Electronic Features of Tetrahedral Molecules Interacted with Halide Anions. Molecules 2022; 27:molecules27175411. [PMID: 36080180 PMCID: PMC9458139 DOI: 10.3390/molecules27175411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 08/19/2022] [Accepted: 08/23/2022] [Indexed: 11/16/2022] Open
Abstract
Using the orbital-free quantum crystallography approach, we have disclosed the quantitative trends in electronic features for bonds of different strengths formed by tetrel (Tt) atoms in stable molecular complexes consisting of electrically neutral tetrahedral molecules and halide anions. We have revealed the role of the electrostatic and exchange-correlation components of the total one-electron static potential that are determined by the equilibrium atomic structure and by kinetic Pauli potential, which reflects the spin-dependent electron motion features of the weak and strong bonds. The gap between the extreme positions in the electrostatic and total static potentials along the line linking the Tt atom and halide anion is wide for weak bonds and narrow for strong ones. It is in very good agreement with the number of minima in the Pauli potential between the bounded atoms. This gap exponentially correlates with the exchange-correlation potential in various series with a fixed nucleophilic fragment. A criterion for categorizing the noncovalent tetrel bonds (TtB) based on the potential features is suggested.
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Affiliation(s)
- Ekaterina V Bartashevich
- Chemistry Department, South Ural State University (National Research University), 76, Lenin Av., 454080 Chelyabinsk, Russia
| | - Svetlana E Mukhitdinova
- Chemistry Department, South Ural State University (National Research University), 76, Lenin Av., 454080 Chelyabinsk, Russia
| | - Iliya V Klyuev
- Chemistry Department, South Ural State University (National Research University), 76, Lenin Av., 454080 Chelyabinsk, Russia
| | - Vladimir G Tsirelson
- Chemistry Department, South Ural State University (National Research University), 76, Lenin Av., 454080 Chelyabinsk, Russia
- Quantum Chemistry Department, D.I. Mendeleev University of Chemical Technology, 125047 Moscow, Russia
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9
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Porȩba T, Racioppi S, Garbarino G, Morgenroth W, Mezouar M. Investigating the Structural Symmetrization of CsI 3 at High Pressures through Combined X-ray Diffraction Experiments and Theoretical Analysis. Inorg Chem 2022; 61:10977-10985. [DOI: 10.1021/acs.inorgchem.2c01690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Tomasz Porȩba
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, Grenoble 38000, France
| | - Stefano Racioppi
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260-3000, United States
| | - Gaston Garbarino
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, Grenoble 38000, France
| | - Wolfgang Morgenroth
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, Grenoble 38000, France
- Institute of Geosciences, University of Potsdam, Potsdam-Golm 14476, Germany
| | - Mohamed Mezouar
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, Grenoble 38000, France
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10
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Aliyarova IS, Tupikina EY, Ivanov DM, Kukushkin VY. Metal-Involving Halogen Bonding Including Gold(I) as a Nucleophilic Partner. The Case of Isomorphic Dichloroaurate(I)·Halomethane Cocrystals. Inorg Chem 2022; 61:2558-2567. [DOI: 10.1021/acs.inorgchem.1c03482] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Irina S. Aliyarova
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Elena Yu. Tupikina
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Daniil M. Ivanov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Vadim Yu. Kukushkin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
- Institute of Chemistry and Pharmaceutical Technologies, Altai State University, Barnaul 656049, Russian Federation
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11
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Zelenkov LE, Eliseeva AA, Baykov S, Ivanov DM, Sumina AI, Gomila RM, Frontera A, Kukushkin VY, Bokach NA. Inorganic–Organic {dz2-MIIS4}···π-Hole Stacking in Reverse Sandwich Structures. The Case of Cocrystals of Group 10 Metal Dithiocarbamates with Electron-deficient Arenes. Inorg Chem Front 2022. [DOI: 10.1039/d2qi00438k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Cocrystallization of the dithiocarbamate complexes [M(S2CNEt2)2] (M = Ni 1, Pd 2, Pt 3) and X-substituted perfluoroarenes (X = I, Br; 1,2-dibromoperfluorobenzene FBrB and 1,2-diiodoperfluorobenzene FIB) gives isomorphous cocrystals of...
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12
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Kinzhalov MA, Ivanov DM, Melekhova AA, Bokach NA, Gomila RM, Frontera A, Kukushkin VY. Chameleonic Metal-bound Isocyanides: π-Donating CuI-center Imparts a Nucleophilicity to the Isocyanide Carbon toward Halogen Bonding. Inorg Chem Front 2022. [DOI: 10.1039/d2qi00034b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In the structures of the isostructural cocrystals [CuI3(CNXyl)3]·CHX3 (X = Br, I), two adjacent CuI-bound isocyanide groups, whose carbon lone pairs are blocked by the ligation, exhibit nucleophilic properties induced...
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13
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Bulatova M, Ivanov DM, Rautiainen JM, Kinzhalov MA, Truong KN, Lahtinen M, Haukka M. Studies of Nature of Uncommon Bifurcated I-I···( I- M) Metal-Involving Noncovalent Interaction in Palladium(II) and Platinum(II) Isocyanide Cocrystals. Inorg Chem 2021; 60:13200-13211. [PMID: 34357775 PMCID: PMC8424624 DOI: 10.1021/acs.inorgchem.1c01591] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Indexed: 12/03/2022]
Abstract
Two isostructural trans-[MI2(CNXyl)2]·I2 (M = Pd or Pt; CNXyl = 2,6-dimethylphenyl isocyanide) metallopolymeric cocrystals containing uncommon bifurcated iodine···(metal-iodide) contact were obtained. In addition to classical halogen bonding, single-crystal X-ray diffraction analysis revealed a rare type of metal-involved stabilizing contact in both cocrystals. The nature of the noncovalent contact was studied computationally (via DFT, electrostatic surface potential, electron localization function, quantum theory of atoms in molecules, and noncovalent interactions plot methods). Studies confirmed that the I···I halogen bond is the strongest noncovalent interaction in the systems, followed by weaker I···M interaction. The electrophilic and nucleophilic nature of atoms participating in I···M interaction was studied with ED/ESP minima analysis. In trans-[PtI2(CNXyl)2]·I2 cocrystal, Pt atoms act as weak nucleophiles in I···Pt interaction. In the case of trans-[PdI2(CNXyl)2]·I2 cocrystal, electrophilic/nucleophilic roles of Pd and I are not clear, and thus the quasimetallophilic nature of the I···Pd interaction was suggested.
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Affiliation(s)
- Margarita Bulatova
- Department
of Chemistry, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland
| | - Daniil M. Ivanov
- Institute
of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - J. Mikko Rautiainen
- Department
of Chemistry, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland
| | - Mikhail A. Kinzhalov
- Institute
of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Khai-Nghi Truong
- Department
of Chemistry, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland
| | - Manu Lahtinen
- Department
of Chemistry, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland
| | - Matti Haukka
- Department
of Chemistry, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland
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14
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The Isocyanide Complexes cis-[MCl2(CNC6H4-4-X)2] (M = Pd, Pt; X = Cl, Br) as Tectons in Crystal Engineering Involving Halogen Bonds. CRYSTALS 2021. [DOI: 10.3390/cryst11070799] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
The isocyanide complexes cis-[MCl2(CNC6H4-4-X)2] (M = Pd; X = Cl, Br; M = Pt; X = Br) form isomorphous crystal structures exhibiting the Cl/Br and Pd/Pt exchanges featuring 1D chains upon crystallisation. Crystal packing is supported by the C–X···X–C halogen bonds (HaBs), C–H···X–C hydrogen bonds (HB), X···M semicoordination, and C···C contacts between the C atoms of aryl isocyanide ligands. The results of DFT calculations and topological analysis indicate that all the above contact types belong to attractive noncovalent interactions. A projection of the electron localization function (ELF) and an inspection of the electron density (ED) and the electrostatic potential (ESP) reveal the amphiphilic nature of X atoms playing the role of HaB donors, HaB and HB acceptors, and a nucleophilic partner in X···M semicoordination.
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15
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Facile Synthesis of Bio-Antimicrobials with "Smart" Triiodides. Molecules 2021; 26:molecules26123553. [PMID: 34200814 PMCID: PMC8230494 DOI: 10.3390/molecules26123553] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2021] [Revised: 05/31/2021] [Accepted: 06/06/2021] [Indexed: 12/26/2022] Open
Abstract
Multi-drug resistant pathogens are a rising danger for the future of mankind. Iodine (I2) is a centuries-old microbicide, but leads to skin discoloration, irritation, and uncontrolled iodine release. Plants rich in phytochemicals have a long history in basic health care. Aloe Vera Barbadensis Miller (AV) and Salvia officinalis L. (Sage) are effectively utilized against different ailments. Previously, we investigated the antimicrobial activities of smart triiodides and iodinated AV hybrids. In this work, we combined iodine with Sage extracts and pure AV gel with polyvinylpyrrolidone (PVP) as an encapsulating and stabilizing agent. Fourier transform infrared spectroscopy (FT-IR), Ultraviolet-visible spectroscopy (UV-Vis), Surface-Enhanced Raman Spectroscopy (SERS), microstructural analysis by scanning electron microscopy (SEM), energy dispersive spectroscopy (EDS), and X-Ray-Diffraction (XRD) analysis verified the composition of AV-PVP-Sage-I2. Antimicrobial properties were investigated by disc diffusion method against 10 reference microbial strains in comparison to gentamicin and nystatin. We impregnated surgical sutures with our biohybrid and tested their inhibitory effects. AV-PVP-Sage-I2 showed excellent to intermediate antimicrobial activity in discs and sutures. The iodine within the polymeric biomaterial AV-PVP-Sage-I2 and the synergistic action of the two plant extracts enhanced the microbial inhibition. Our compound has potential for use as an antifungal agent, disinfectant and coating material on sutures to prevent surgical site infections.
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16
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Edis Z, Raheja R, Bloukh SH, Bhandare RR, Sara HA, Reiss GJ. Antimicrobial Hexaaquacopper(II) Complexes with Novel Polyiodide Chains. Polymers (Basel) 2021; 13:1005. [PMID: 33805240 PMCID: PMC8037870 DOI: 10.3390/polym13071005] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2021] [Revised: 03/15/2021] [Accepted: 03/22/2021] [Indexed: 12/26/2022] Open
Abstract
The non-toxic inorganic antimicrobial agents iodine (I2) and copper (Cu) are interesting alternatives for biocidal applications. Iodine is broad-spectrum antimicrobial agent but its use is overshadowed by compound instability, uncontrolled iodine release and short-term effectiveness. These disadvantages can be reduced by forming complex-stabilized, polymeric polyiodides. In a facile, in-vitro synthesis we prepared the copper-pentaiodide complex [Cu(H2O)6(12-crown-4)5]I6 · 2I2, investigated its structure and antimicrobial properties. The chemical structure of the compound has been verified. We used agar well and disc-diffusion method assays against nine microbial reference strains in comparison to common antibiotics. The stable complex revealed excellent inhibition zones against C. albicans WDCM 00054, and strong antibacterial activities against several pathogens. [Cu(H2O)6(12-crown-4)5]I6 · 2I2 is a strong antimicrobial agent with an interesting crystal structure consisting of complexes located on an inversion center and surrounded by six 12-crown-4 molecules forming a cationic substructure. The six 12-crown-4 molecules form hydrogen bonds with the central Cu(H2O)6. The anionic substructure is a halogen bonded polymer which is formed by formal I5- repetition units. The topology of this chain-type polyiodide is unique. The I5- repetition units can be understood as a triodide anion connected to two iodine molecules.
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Affiliation(s)
- Zehra Edis
- Department of Pharmaceutical Sciences, College of Pharmacy and Health Science, Ajman University, PO Box 346, Ajman, United Arab Emirates;
- Center of Medical and Bio-Allied Health Sciences Research, Ajman University, Ajman, United Arab Emirates; (S.H.B.); (H.A.S.)
| | - Radhika Raheja
- SVKM’S Dr. Bhanuben Nanavati College of Pharmacy, Mumbai 400056, India;
| | - Samir Haj Bloukh
- Center of Medical and Bio-Allied Health Sciences Research, Ajman University, Ajman, United Arab Emirates; (S.H.B.); (H.A.S.)
- Department of Clinical Sciences, College of Pharmacy and Health Science, Ajman University, PO Box 346, Ajman, United Arab Emirates
| | - Richie R. Bhandare
- Department of Pharmaceutical Sciences, College of Pharmacy and Health Science, Ajman University, PO Box 346, Ajman, United Arab Emirates;
- Center of Medical and Bio-Allied Health Sciences Research, Ajman University, Ajman, United Arab Emirates; (S.H.B.); (H.A.S.)
| | - Hamid Abu Sara
- Center of Medical and Bio-Allied Health Sciences Research, Ajman University, Ajman, United Arab Emirates; (S.H.B.); (H.A.S.)
- Department of Clinical Sciences, College of Pharmacy and Health Science, Ajman University, PO Box 346, Ajman, United Arab Emirates
| | - Guido J. Reiss
- Institut fur Anorganische Chemie und Strukturchemie, Heinrich-Heine University Düsseldorf, 40225 Düsseldorf, Germany;
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17
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Eliseeva A, Ivanov DM, Rozhkov AV, Ananyev IV, Frontera A, Kukushkin VY. Bifurcated Halogen Bonding Involving Two Rhodium(I) Centers as an Integrated σ-Hole Acceptor. JACS AU 2021; 1:354-361. [PMID: 34467299 PMCID: PMC8395620 DOI: 10.1021/jacsau.1c00012] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Indexed: 06/13/2023]
Abstract
The complexes [RhX(COD)]2 (X = Cl, Br; COD = 1,5-cyclooctadiene) form cocrystals with σ-hole iodine donors. X-ray diffraction studies and extensive theoretical considerations indicate that the d z 2-orbitals of two positively charged rhodium(I) centers provide sufficient nucleophilicity to form a three-center halogen bond (XB) with the σ-hole donors. The two metal centers function as an integrated XB acceptor, providing assembly via a metal-involving XB.
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Affiliation(s)
- Anastasiya
A. Eliseeva
- Institute
of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russian Federation
| | - Daniil M. Ivanov
- Institute
of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russian Federation
| | - Anton V. Rozhkov
- Institute
of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russian Federation
| | - Ivan V. Ananyev
- A.
N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Vavilova St. 28, 119991 Moscow, Russian Federation
| | - Antonio Frontera
- Department
of Chemistry, Universitat de les Illes Balears, Crts de Valldemossa km. 7.5, 07122 Palma de Mallorca (Baleares), Spain
| | - Vadim Yu. Kukushkin
- Institute
of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russian Federation
- Laboratory
of Crystal Engineering of Functional Materials, South Ural State University, Lenin Av. 76, 454080 Chelyabinsk, Russian Federation
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18
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Frosch J, Koneczny M, Bannenberg T, Tamm M. Halogen Complexes of Anionic N-Heterocyclic Carbenes. Chemistry 2021; 27:4349-4363. [PMID: 33094865 PMCID: PMC7986712 DOI: 10.1002/chem.202004418] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2020] [Indexed: 12/12/2022]
Abstract
The lithium complexes [(WCA-NHC)Li(toluene)] of anionic N-heterocyclic carbenes with a weakly coordinating anionic borate moiety (WCA-NHC) reacted with iodine, bromine, or CCl4 to afford the zwitterionic 2-halogenoimidazolium borates (WCA-NHC)X (X=I, Br, Cl; WCA=B(C6 F5 )3 , B{3,5-C6 H3 (CF3 )2 }3 ; NHC=IDipp=1,3-bis(2,6-diisopropylphenyl)imidazolin-2-ylidene, or NHC=IMes=1,3-bis(2,4,6-trimethylphenyl)imidazolin-2-ylidene). The iodine derivative (WCA-IDipp)I (WCA=B(C6 F5 )3 ) formed several complexes of the type (WCA-IDipp)I⋅L (L=C6 H5 Cl, C6 H5 Me, CH3 CN, THF, ONMe3 ), revealing its ability to act as an efficient halogen bond donor, which was also exploited for the preparation of hypervalent bis(carbene)iodine(I) complexes of the type [(WCA-IDipp)I(NHC)] and [PPh4 ][(WCA-IDipp)I(WCA-NHC)] (NHC=IDipp, IMes). The corresponding bromine complex [PPh4 ][(WCA-IDipp)2 Br] was isolated as a rare example of a hypervalent (10-Br-2) system. DFT calculations reveal that London dispersion contributes significantly to the stability of the bis(carbene)halogen(I) complexes, and the bonding was further analyzed by quantum theory of atoms in molecules (QTAIM) analysis.
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Affiliation(s)
- Jenni Frosch
- Institut für Anorganische und Analytische ChemieTechnische Universität BraunschweigHagenring 3038106BraunschweigGermany
| | - Marvin Koneczny
- Institut für Anorganische und Analytische ChemieTechnische Universität BraunschweigHagenring 3038106BraunschweigGermany
| | - Thomas Bannenberg
- Institut für Anorganische und Analytische ChemieTechnische Universität BraunschweigHagenring 3038106BraunschweigGermany
| | - Matthias Tamm
- Institut für Anorganische und Analytische ChemieTechnische Universität BraunschweigHagenring 3038106BraunschweigGermany
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19
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Van der Maelen JF, Ceroni M, Ruiz J. The X-ray constrained wavefunction of the [Mn(CO) 4{(C 6H 5) 2P-S-C(Br 2)-P(C 6H 5) 2}]Br complex: a theoretical and experimental study of dihalogen bonds and other noncovalent interactions. ACTA CRYSTALLOGRAPHICA SECTION B, STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS 2020; 76:802-814. [PMID: 33017314 DOI: 10.1107/s2052520620009889] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Accepted: 07/19/2020] [Indexed: 06/11/2023]
Abstract
The synthesis and X-ray structure determination of the [Mn(CO)4{(C6H5)2P-S-C(Br2)-P(C6H5)2}]Br complex (1) are described. The C-Br...Br dihalogen bond present in 1 has been characterized by means of topological studies of the electron density. Both the quantum theory of atoms in molecules and the electron localization function approaches have been applied to several theoretically calculated wavefunctions as well as to an X-ray constrained wavefunction. In addition, a number of theoretical techniques, such as the source function, the reduced density gradient method and the interacting quantum atoms approach, among others, have been used to analyse the dihalogen bond as well as several intramolecular interactions of the type C-H...Br-C which have also been detected in 1. The results show clearly that while bonding in the latter interactions are dominated by electrostatic components, the former has a high degree of covalency.
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Affiliation(s)
- Juan F Van der Maelen
- Dept. Química Física y Analítica, Universidad de Oviedo, Avda. Julián Clavería 8, Oviedo, Asturias E-33006, Spain
| | - Mario Ceroni
- Facultad de Química e Ingeniería Química, Universidad Nacional Mayor de San Marcos, Lima, Peru
| | - Javier Ruiz
- Dept. Química Orgánica e Inorgánica, Universidad de Oviedo, Avda. Julián Clavería 8, Oviedo, Asturias E-33006, Spain
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20
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Bartashevich E, Sobalev S, Matveychuk Y, Tsirelson V. Variations of quantum electronic pressure under the external compression in crystals with halogen bonds assembled in Cl3-, Br3-, I3-synthons. ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE CRYSTAL ENGINEERING AND MATERIALS 2020; 76:514-523. [DOI: 10.1107/s2052520620006113] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2020] [Accepted: 05/05/2020] [Indexed: 11/10/2022]
Abstract
The inner-crystal quantum electronic pressure was estimated for unstrained C6Cl6, C6Br6, and C6I6 crystals and for those under external compression simulated from 1 to 20 GPa. The changes in its distribution were analyzed for the main structural elements in considered crystals: for triangles of the typical halogen bonds assembled in Hal3-synthons, where Hal = Cl, Br, I; for Hal...Hal stacking interactions, as well as for covalent bonds. Under simulated external compression, the quantum electronic pressure in the intermolecular space reduces as the electron density increases, indicating spatial areas of relatively less crystal resistance to external compression. The most compliant C6Cl6 crystal shows the largest changes of quantum electronic pressure in the centre of Cl3-synthon while the deformation of rigid I3-synthon under external compression depends only on the features of I...I halogen bonds.
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21
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Reiss GJ. Crystal structure of bis(1,3-phenylenedimethanaminium) bis(triiodide) tetraiodide – water (1/2) , C 8H 16I 5N 2O. Z KRIST-NEW CRYST ST 2020. [DOI: 10.1515/ncrs-2020-0164] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
C8H16I5N2O, monoclinic, C2/c (no. 15), a = 34.180(5) Å, b = 7.6817(3) Å, c = 21.421(3) Å, β = 137.93(3)°, Z = 8, V = 3768.7(16) Å3, Rgt(F) = 0.0364, wR
ref = 0.0737, T = 290(2) K.
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Affiliation(s)
- Guido J. Reiss
- Institut für Anorganische Chemie und Strukturchemie, Lehrstuhl II: Material- und Strukturforschung, Heinrich-Heine-Universität Düsseldorf , Universitätsstrasse 1 , D-40225 Düsseldorf , Germany
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22
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Ivolgina VA, Chernov’yants MS, Popov LD, Suslonov VV, Avtushenko NA, Luanguzov NV. Structural study and thermal behavior of novel interaction product of 4-amino-5-(furan-2-yl)-4H-1,2,4-triazole-3-thione with molecular iodine. PHOSPHORUS SULFUR 2020. [DOI: 10.1080/10426507.2019.1700414] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
| | | | - Leonid D. Popov
- Department of Chemistry, Southern Federal University, Rostov-on-Don, Russia
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23
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Noncovalent Bonds, Spectral and Thermal Properties of Substituted Thiazolo[2,3-b][1,3]thiazinium Triiodides. CRYSTALS 2019. [DOI: 10.3390/cryst9100506] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The interrelation between noncovalent bonds and physicochemical properties is in the spotlight due to the practical aspects in the field of crystalline material design. Such study requires a number of similar substances in order to reveal the effect of structural features on observed properties. For this reason, we analyzed a series of three substituted thiazolo[2,3-b][1,3]thiazinium triiodides synthesized by an iodocyclization reaction. They have been characterized with the use of X-ray diffraction, Raman spectroscopy, and thermal analysis. Various types of noncovalent interactions have been considered, and an S…I chalcogen bond type has been confirmed using the electronic criterion based on the calculated electron density and electrostatic potential. The involvement of triiodide anions in the I…I halogen and S…I chalcogen bonding is reflected in the Raman spectroscopic properties of the I–I bonds: identical bond lengths demonstrate different wave numbers of symmetric triiodide vibration and different values of electron density at bond critical points. Chalcogen and halogen bonds formed by the terminal iodine atom of triiodide anion and numerous cation…cation pairwise interactions can serve as one of the reasons for increased thermal stability and retention of iodine in the melt under heating.
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24
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Reiss GJ. Halogen and hydrogen bonding in the layered crystal structure of 2-iodoanilinium triiodide, C6H7I4N. Z KRIST-NEW CRYST ST 2019. [DOI: 10.1515/ncrs-2019-0127] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
AbstractC6H7I4N, monoclinic, P21/m (no. 11), a = 9.2818(2) Å, b = 6.55289(16) Å, c = 11.0561(3) Å, β = 114.051(3)°, V = 614.08(3) Å3, Z = 2, Rgt(F) = 0.0180, wRref(F2) = 0.0367, T = 109(2) K.
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Affiliation(s)
- Guido J. Reiss
- Institut für Anorganische Chemie und Strukturchemie, Lehrstuhl II: Material- und Strukturforschung, Heinrich-Heine-Universität Düsseldorf, Universitätsstrasse 1, D-40225 Düsseldorf, Germany, e-mail:
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25
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Yushina ID, Kolesov BA. Interplay of Intra- and Intermolecular Interactions in Solid Iodine at Low Temperatures: Experimental and Theoretic Spectroscopy Study. J Phys Chem A 2019; 123:4575-4580. [PMID: 31063373 DOI: 10.1021/acs.jpca.9b01167] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
This work is devoted to the discussion of structural changes in crystalline iodine under low temperature studied from experimental and theoretic points of view. Experimental Raman spectra in the temperature range 5-300 K demonstrated unusual behavior of stretching vibration at ∼180 cm-1 with temperature. The data allowed obtaining of ω( T) functions for both external translational and internal stretching modes of I2. It was found that ω( T) trends significantly differ in comparison to typical van der Waals crystal α-S8. The observed anomalies are explained from a theoretic point of view because of the strengthening of intralayer halogen bonding between I2 molecules.
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Affiliation(s)
- I D Yushina
- South Ural State University , Chelyabinsk 454080 , Russia
| | - B A Kolesov
- A.V. Nikolaev Institute of Inorganic Chemistry, Siberian Branch , Russian Academy of Sciences , Novosibirsk 630090 , Russia.,Faculty of Physics , Novosibirsk National State Research University , Novosibirsk 630090 , Russia
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26
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Poręba T, Ernst M, Zimmer D, Macchi P, Casati N. Pressure‐Induced Polymerization and Electrical Conductivity of a Polyiodide. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201901178] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Tomasz Poręba
- Laboratory for Synchrotron Radiation—Condensed MatterPaul Scherrer Institute 5232 Villigen–PSI Switzerland
- Department of Chemistry and BiochemistryUniversity of Bern Freiestrasse 3 3012 Bern Switzerland
| | - Michelle Ernst
- Department of Chemistry and BiochemistryUniversity of Bern Freiestrasse 3 3012 Bern Switzerland
| | - Dominik Zimmer
- Institute of GeosciencesGoethe-University Frankfurt, Crystallography/Mineralogy Altenhoeferallee 1 60438 Frankfurt am Main Germany
| | - Piero Macchi
- Department of Chemistry and BiochemistryUniversity of Bern Freiestrasse 3 3012 Bern Switzerland
- Department of ChemistryMaterials and Chemical Engineering Polytechnic of Milan Via Mancinelli 7 20131 Milano Italy
| | - Nicola Casati
- Laboratory for Synchrotron Radiation—Condensed MatterPaul Scherrer Institute 5232 Villigen–PSI Switzerland
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27
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Poręba T, Ernst M, Zimmer D, Macchi P, Casati N. Pressure-Induced Polymerization and Electrical Conductivity of a Polyiodide. Angew Chem Int Ed Engl 2019; 58:6625-6629. [PMID: 30844119 DOI: 10.1002/anie.201901178] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2019] [Indexed: 11/11/2022]
Abstract
We report the high-pressure structural characterization of an organic polyiodide salt in which a progressive addition of iodine to triiodide groups occurs. Compression leads to the initial formation of discrete heptaiodide units, followed by polymerization to a 3D anionic network. Although the structural changes appear to be continuous, the insulating salt becomes a semiconducting polymer above 10 GPa. The features of the pre-reactive state and the polymerized state are revealed by analysis of the computed electron and energy densities. The unusually high electrical conductivity can be explained with the formation of new bonds.
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Affiliation(s)
- Tomasz Poręba
- Laboratory for Synchrotron Radiation-Condensed Matter, Paul Scherrer Institute, 5232, Villigen-PSI, Switzerland.,Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, 3012, Bern, Switzerland
| | - Michelle Ernst
- Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, 3012, Bern, Switzerland
| | - Dominik Zimmer
- Institute of Geosciences, Goethe-University Frankfurt, Crystallography/Mineralogy, Altenhoeferallee 1, 60438, Frankfurt am Main, Germany
| | - Piero Macchi
- Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, 3012, Bern, Switzerland.,Department of Chemistry, Materials and Chemical Engineering Polytechnic of Milan, Via Mancinelli 7, 20131, Milano, Italy
| | - Nicola Casati
- Laboratory for Synchrotron Radiation-Condensed Matter, Paul Scherrer Institute, 5232, Villigen-PSI, Switzerland
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28
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Stabilization of Supramolecular Networks of Polyiodides with Protonated Small Tetra-azacyclophanes. INORGANICS 2019. [DOI: 10.3390/inorganics7040048] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
Polyiodide chemistry is among the first historically reported examples of supramolecular forces at work. To date, owing to the increasingly recognized role of halogen bonding and the incorporation of iodine-based components in several devices, it remains an active field of theoretical and applied research. Herein we re-examine azacyclophanes as a class of ligands for the stabilization of iodine-dense three-dimensional networks, showing how we devised novel possible strategies starting from literature material. The new set of azacyclophane ligands affords novel crystal structures possessing intriguing properties, which develop on a double layer. At a macroscopic level, the obtained networks possess a very high iodine packing density (less than 2 times more diluted than crystalline I2): a simple parameter, IN, is also introduced to quickly measure and compare iodine packing density in different crystals. On the microscopic level, the present study provides evidence about the ability of one of the ligands to act as a three-dimensional supramolecular mold for the template synthesis of the rarely observed heptaiodide (I7−) anion. Therefore, we believe our approach and strategy might be relevant for crystal engineering purposes.
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29
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Bartashevich E, Matveychuk Y, Tsirelson V. Identification of the Tetrel Bonds between Halide Anions and Carbon Atom of Methyl Groups Using Electronic Criterion. Molecules 2019; 24:E1083. [PMID: 30893831 PMCID: PMC6471983 DOI: 10.3390/molecules24061083] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Revised: 03/15/2019] [Accepted: 03/16/2019] [Indexed: 11/17/2022] Open
Abstract
The consideration of the disposition of minima of electron density and electrostatic potential along the line between non-covalently bound atoms in systems with Hal-···CH₃⁻Y (Hal- = Cl, Br; Y = N, O) fragments allowed to prove that the carbon atom in methyl group serves as an electrophilic site provider. These interactions between halide anion and carbon in methyl group can be categorized as the typical tetrel bonds. Statistics of geometrical parameters for such tetrel bonds in CSD is analyzed. It is established that the binding energy in molecular complexes with tetrel bonds correlate with the potential acting on an electron in molecule (PAEM). The PAEM barriers for tetrel bonds show a similar behavior for both sets of complexes with Br- and Cl- electron donors.
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Affiliation(s)
- Ekaterina Bartashevich
- Research Laboratory of Multiscale Modelling of Multicomponent Functional Materials, REC Nanotechnology, South Ural State University, 454080 Chelyabinsk, Russia.
| | - Yury Matveychuk
- Research Laboratory of Multiscale Modelling of Multicomponent Functional Materials, REC Nanotechnology, South Ural State University, 454080 Chelyabinsk, Russia.
| | - Vladimir Tsirelson
- Research Laboratory of Multiscale Modelling of Multicomponent Functional Materials, REC Nanotechnology, South Ural State University, 454080 Chelyabinsk, Russia.
- Quantum Chemistry Department, D.I. Mendeleev University of Chemical Technology, 125047 Moscow, Russia.
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30
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Bartashevich E, Mukhitdinova S, Yushina I, Tsirelson V. Electronic criterion for categorizing the chalcogen and halogen bonds: sulfur–iodine interactions in crystals. ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE CRYSTAL ENGINEERING AND MATERIALS 2019; 75:117-126. [DOI: 10.1107/s2052520618018280] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2018] [Accepted: 12/24/2018] [Indexed: 11/10/2022]
Abstract
Diversity of mutual orientations of Y–S and I–X and covalent bonds in molecular crystals complicate categorizing noncovalent chalcogen and halogen bonds. Here, the different types of S...I interactions with short interatomic distances are analysed. The selection of S...I interactions for the categorization of the chalcogen and halogen bonds has been made using angles that determine the mutual orientation of electron lone pairs and σ-holes interacted S and I atoms. In complicated cases of noncovalent interactions with `hole-to-hole' of S and I orientations, distinguishing the chalcogen and halogen bonds is only possible if the atom is uniquely determined, which also provides the electrophilic site. The electronic criterion for chalcogen/halogen bonds categorizing that is based on analysis of dispositions of electron density and electrostatic potential minima along the interatomic lines has been suggested and its effectiveness has been demonstrated.
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31
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Gorokh ID, Adonin SA, Novikov AS, Sokolov MN, Samsonenko DG, Fedin VP. Polybromides of pyridinium and quinolinium-type cations: Cation-induced structural diversity and theoretical analysis of Br⋯Br interactions. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.11.070] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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32
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Mukhitdinova SE, Bartashevich EV, Tsirelson VG. Bond Order Indices of Iodine: From Molecular Complexes to Crystals. J STRUCT CHEM+ 2019. [DOI: 10.1134/s002247661808019x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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33
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Gholivand K, Tizhoush SK, Kozakiewicz A, Eskandari K, Farshadfar K. Copper( i) complexes of functionalized sulfur-containing ligands: structural and theoretical insights into chalcogen bonding. CrystEngComm 2019. [DOI: 10.1039/c8ce02006j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Four new copper(i) thiocyanate complexes were studied using geometrical parameters and the lump–hole approach for justification of the strength and nature of chalcogen bonding.
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Affiliation(s)
- Khodayar Gholivand
- Department of Chemistry
- Faculty of Science
- Tarbiat Modares University
- Tehran
- Iran
| | - Samaneh K. Tizhoush
- Department of Chemistry
- Faculty of Science
- Tarbiat Modares University
- Tehran
- Iran
| | - Anna Kozakiewicz
- Faculty of Chemistry
- Nicolaus Copernicus University in Toruń
- 87-100 Toruń
- Poland
| | - Kiamars Eskandari
- Department of Chemistry
- Isfahan University of Technology
- Isfahan 84156-83111
- Iran
| | - Kaveh Farshadfar
- Department of Chemistry
- Faculty of Science
- Tarbiat Modares University
- Tehran
- Iran
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34
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Adonin SA, Bondarenko MA, Abramov PA, Novikov AS, Plyusnin PE, Sokolov MN, Fedin VP. Bromo- and Polybromoantimonates(V): Structural and Theoretical Studies of Hybrid Halogen-Rich Halometalate Frameworks. Chemistry 2018; 24:10165-10170. [PMID: 29683216 DOI: 10.1002/chem.201801338] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Indexed: 01/24/2023]
Abstract
Cation-dependent reactions "[SbBr6 ]3- +Br2 +HBr+CationBrx " result in the formation of bromide/polybromide complexes with zero-, one-, two-, or three-dimensional supramolecular frameworks and different Br/Sb ratios (up to 11). Seven new compounds representing six structural types were characterized by XRD and thermogravimetric analysis and DFT calculations enabled estimation of the energies of the Br⋅⋅⋅Br contacts (1.1-4.6 kcal mol-1 ).
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Affiliation(s)
- Sergey A Adonin
- Nikolaev Institute of Inorganic Chemistry SB RAS, 630090, Lavrentieva St. 3, Novosibirsk, Russia.,Faculty of Natural Sciences, Novosibirsk State University, 630090, Pirogova St. 2, Novosibirsk, Russia
| | - Mikhail A Bondarenko
- Faculty of Natural Sciences, Novosibirsk State University, 630090, Pirogova St. 2, Novosibirsk, Russia
| | - Pavel A Abramov
- Nikolaev Institute of Inorganic Chemistry SB RAS, 630090, Lavrentieva St. 3, Novosibirsk, Russia.,Faculty of Natural Sciences, Novosibirsk State University, 630090, Pirogova St. 2, Novosibirsk, Russia
| | - Alexander S Novikov
- Institute of Chemistry, Saint Petersburg State University, 199034, Universitetskaya Nab. 7-9, Saint Petersburg, Russia
| | - Pavel E Plyusnin
- Nikolaev Institute of Inorganic Chemistry SB RAS, 630090, Lavrentieva St. 3, Novosibirsk, Russia.,Faculty of Natural Sciences, Novosibirsk State University, 630090, Pirogova St. 2, Novosibirsk, Russia
| | - Maxim N Sokolov
- Nikolaev Institute of Inorganic Chemistry SB RAS, 630090, Lavrentieva St. 3, Novosibirsk, Russia.,Faculty of Natural Sciences, Novosibirsk State University, 630090, Pirogova St. 2, Novosibirsk, Russia
| | - Vladimir P Fedin
- Nikolaev Institute of Inorganic Chemistry SB RAS, 630090, Lavrentieva St. 3, Novosibirsk, Russia.,Faculty of Natural Sciences, Novosibirsk State University, 630090, Pirogova St. 2, Novosibirsk, Russia
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35
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Modern level for properties prediction of iodine-containing organic compounds: the halogen bonds formed by iodine. Russ Chem Bull 2017. [DOI: 10.1007/s11172-017-1898-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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