An automatic beat detection algorithm for pressure signals

pyPPG: a Python toolbox for comprehensive photoplethysmography signal analysis

Objective.Photoplethysmography is a non-invasive optical technique that measures changes in blood volume within tissues. It is commonly and being increasingly used for a variety of research and clinical applications to assess vascular dynamics and physiological parameters. Yet, contrary to heart rate variability measures, a field which has seen the development of stable standards and advanced toolboxes and software, no such standards and limited open tools exist for continuous photoplethysmogram (PPG) analysis. Consequently, the primary objective of this research was to identify, standardize, implement and validate key digital PPG biomarkers.Approach.This work describes the creation of a standard Python toolbox, denotedpyPPG, for long-term continuous PPG time-series analysis and demonstrates the detection and computation of a high number of fiducial points and digital biomarkers using a standard fingerbased transmission pulse oximeter.Main results.The improved PPG peak detector had an F1-score of 88.19% for the state-of-the-art benchmark when evaluated on 2054 adult polysomnography recordings totaling over 91 million reference beats. The algorithm outperformed the open-source original Matlab implementation by ∼5% when benchmarked on a subset of 100 randomly selected MESA recordings. More than 3000 fiducial points were manually annotated by two annotators in order to validate the fiducial points detector. The detector consistently demonstrated high performance, with a mean absolute error of less than 10 ms for all fiducial points.Significance.Based on these fiducial points,pyPPGengineered a set of 74 PPG biomarkers. Studying PPG time-series variability usingpyPPGcan enhance our understanding of the manifestations and etiology of diseases. This toolbox can also be used for biomarker engineering in training data-driven models.pyPPGis available onhttps://physiozoo.com/.

The influence of cardiac arrhythmias on the detection of heartbeats in the photoplethysmogram: benchmarking open-source algorithms

Objective.Cardiac arrhythmias are a leading cause of mortality worldwide. Wearable devices based on photoplethysmography give the opportunity to screen large populations, hence allowing for an earlier detection of pathological rhythms that might reduce the risks of complications and medical costs. While most of beat detection algorithms have been evaluated on normal sinus rhythm or atrial fibrillation recordings, the performance of these algorithms in patients with other cardiac arrhythmias, such as ventricular tachycardia or bigeminy, remain unknown to date.Approach. ThePPG-beatsopen-source framework, developed by Charlton and colleagues, evaluates the performance of the beat detectors namedQPPG,MSPTDandABDamong others. We applied thePPG-beatsframework on two newly acquired datasets, one containing seven different types of cardiac arrhythmia in hospital settings, and another dataset including two cardiac arrhythmias in ambulatory settings.Main Results. In a clinical setting, theQPPGbeat detector performed best on atrial fibrillation (with a medianF1score of 94.4%), atrial flutter (95.2%), atrial tachycardia (87.0%), sinus rhythm (97.7%), ventricular tachycardia (83.9%) and was ranked 2nd for bigeminy (75.7%) behindABDdetector (76.1%). In an ambulatory setting, theMSPTDbeat detector performed best on normal sinus rhythm (94.6%), and theQPPGdetector on atrial fibrillation (91.6%) and bigeminy (80.0%).Significance. Overall, the PPG beat detectorsQPPG,MSPTDandABDconsistently achieved higher performances than other detectors. However, the detection of beats from wrist-PPG signals is compromised in presence of bigeminy or ventricular tachycardia.

Identification of Coronary Artery Diseases Using Photoplethysmography Signals and Practical Feature Selection Process

A low-cost, fast, dependable, repeatable, non-invasive, portable, and simple-to-use vascular screening tool for coronary artery diseases (CADs) is preferred. Photoplethysmography (PPG), a low-cost optical pulse wave technology, is one method with this potential. PPG signals come from changes in the amount of blood in the microvascular bed of tissue. Therefore, these signals can be used to figure out anomalies within the cardiovascular system. This work shows how to use PPG signals and feature selection-based classifiers to identify cardiorespiratory disorders based on the extraction of time-domain features. Data were collected from 360 healthy and cardiovascular disease patients. For analysis and identification, five types of cardiovascular disorders were considered. The categories of cardiovascular diseases were identified using a two-stage classification process. The first stage was utilized to differentiate between healthy and unhealthy subjects. Subjects who were found to be abnormal were then entered into the second stage classifier, which was used to determine the type of the disease. Seven different classifiers were employed to classify the dataset. Based on the subset of features found by the classifier, the Naïve Bayes classifier obtained the best test accuracy, with 94.44% for the first stage and 89.37% for the second stage. The results of this study show how vital the PPG signal is. Many time-domain parts of the PPG signal can be easily extracted and analyzed to find out if there are problems with the heart. The results were accurate and precise enough that they did not need to be looked at or analyzed further. The PPG classifier built on a simple microcontroller will work better than more expensive ones and will not make the patient nervous.

Detecting beats in the photoplethysmogram: benchmarking open-source algorithms

The photoplethysmogram (PPG) signal is widely used in pulse oximeters and smartwatches. A fundamental step in analysing the PPG is the detection of heartbeats. Several PPG beat detection algorithms have been proposed, although it is not clear which performs best.Objective:This study aimed to: (i) develop a framework with which to design and test PPG beat detectors; (ii) assess the performance of PPG beat detectors in different use cases; and (iii) investigate how their performance is affected by patient demographics and physiology.Approach:Fifteen beat detectors were assessed against electrocardiogram-derived heartbeats using data from eight datasets. Performance was assessed using theF1score, which combines sensitivity and positive predictive value.Main results:Eight beat detectors performed well in the absence of movement withF1scores of ≥90% on hospital data and wearable data collected at rest. Their performance was poorer during exercise withF1scores of 55%-91%; poorer in neonates than adults withF1scores of 84%-96% in neonates compared to 98%-99% in adults; and poorer in atrial fibrillation (AF) withF1scores of 92%-97% in AF compared to 99%-100% in normal sinus rhythm.Significance:Two PPG beat detectors denoted 'MSPTD' and 'qppg' performed best, with complementary performance characteristics. This evidence can be used to inform the choice of PPG beat detector algorithm. The algorithms, datasets, and assessment framework are freely available.

Training Convolutional Neural Networks on Simulated Photoplethysmography Data: Application to Bradycardia and Tachycardia Detection

Objective: To develop a method for detection of bradycardia and ventricular tachycardia using the photoplethysmogram (PPG).

Approach: The detector is based on a dual-branch convolutional neural network (CNN), whose input is the scalograms of the continuous wavelet transform computed in 5-s segments. Training and validation of the CNN is accomplished using simulated PPG signals generated from RR interval series extracted from public ECG databases. Manually annotated real PPG signals from the PhysioNet/CinC 2015 Challenge Database are used for performance evaluation. The performance is compared to that of a pulse-based reference detector.

Results: The sensitivity/specificity were found to be 98.1%/97.9 and 76.6%/96.8% for the CNN-based detector, respectively, whereas the corresponding results for the pulse-based detector were 94.7%/99.8 and 67.1%/93.8%, respectively.

Significance: The proposed detector may be useful for continuous, long-term monitoring of bradycardia and tachycardia using wearable devices, e.g., wrist-worn devices, especially in situations where sensitivity is favored over specificity. The study demonstrates that simulated PPG signals are suitable for training and validation of a CNN.

Analysis on Four Derivative Waveforms of Photoplethysmogram (PPG) for Fiducial Point Detection

Fiducial points of photoplethysmogram (PPG), first derivative PPG (VPG), and second derivative PPG (APG) are essential in extracting numerous parameters to diagnose cardiovascular disease. However, the fiducial points were usually detected using complex mathematical algorithms. Inflection points from derivatives waveforms are not thoroughly studied, whereas they can significantly assist in peak detection. This study is performed to investigate the derivative waveforms of PPG and use them to detect the important peaks of PPG, VPG, and APG. PPGs with different morphologies from 43 ischemic heart disease subjects are analyzed. Inflection points of the derivative waveforms up to the fourth level are observed, and consistent information (derivative markers) is used to detect the fiducial points of PPG, VPG, and APG with proper sequence. Moving average filter and simple thresholding techniques are applied to detect the primary points in VPG and the third derivative waveform. A total of twelve out of twenty derivative markers are found reliable in detecting fiducial points of two common types of PPG. Systolic peaks are accurately detected with 99.64% sensitivity and 99.38% positive predictivity using the 43 IHD dataset and Complex System Laboratory (CSL) Pulse Oximetry Artifact Labels database. The study has introduced the fourth derivative PPG waveform with four main points, which are significantly valuable for detecting the fiducial points of PPG, VPG, and APG.

Wearable Photoplethysmography for Cardiovascular Monitoring

Smart wearables provide an opportunity to monitor health in daily life and are emerging as potential tools for detecting cardiovascular disease (CVD). Wearables such as fitness bands and smartwatches routinely monitor the photoplethysmogram signal, an optical measure of the arterial pulse wave that is strongly influenced by the heart and blood vessels. In this survey, we summarize the fundamentals of wearable photoplethysmography and its analysis, identify its potential clinical applications, and outline pressing directions for future research in order to realize its full potential for tackling CVD.

A Delineator for Arterial Blood Pressure Waveform Analysis Based on a Deep Learning Technique

A deep learning technique based on semantic segmentation was implemented into the blood pressure detection points field. Two models were trained and evaluated in terms of a reference detector. The proposed methodology outperforms the reference detector in two of the three classic benchmarks and on signals from a public database that were modified with realistic test maneuvers and artifacts. Both models differentiate regions with valid information and artifacts. So far, no other delineator had shown this capacity.

Development and Validation of an Arterial Pressure-Based Cardiac Output Algorithm Using a Convolutional Neural Network: Retrospective Study Based on Prospective Registry Data

Background

Arterial pressure-based cardiac output (APCO) is a less invasive method for estimating cardiac output without concerns about complications from the pulmonary artery catheter (PAC). However, inaccuracies of currently available APCO devices have been reported. Improvements to the algorithm by researchers are impossible, as only a subset of the algorithm has been released.

Objective

In this study, an open-source algorithm was developed and validated using a convolutional neural network and a transfer learning technique.

Methods

A retrospective study was performed using data from a prospective cohort registry of intraoperative bio-signal data from a university hospital. The convolutional neural network model was trained using the arterial pressure waveform as input and the stroke volume (SV) value as the output. The model parameters were pretrained using the SV values from a commercial APCO device (Vigileo or EV1000 with the FloTrac algorithm) and adjusted with a transfer learning technique using SV values from the PAC. The performance of the model was evaluated using absolute error for the PAC on the testing dataset from separate periods. Finally, we compared the performance of the deep learning model and the FloTrac with the SV values from the PAC.

Results

A total of 2057 surgical cases (1958 training and 99 testing cases) were used in the registry. In the deep learning model, the absolute errors of SV were 14.5 (SD 13.4) mL (10.2 [SD 8.4] mL in cardiac surgery and 17.4 [SD 15.3] mL in liver transplantation). Compared with FloTrac, the absolute errors of the deep learning model were significantly smaller (16.5 [SD 15.4] and 18.3 [SD 15.1], P<.001).

Conclusions

The deep learning–based APCO algorithm showed better performance than the commercial APCO device. Further improvement of the algorithm developed in this study may be helpful for estimating cardiac output accurately in clinical practice and optimizing high-risk patient care.

Acquiring Wearable Photoplethysmography Data in Daily Life: The PPG Diary Pilot Study †

The photoplethysmogram (PPG) signal is widely measured by smart watches and fitness bands for heart rate monitoring. New applications of the PPG are also emerging, such as to detect irregular heart rhythms, track infectious diseases, and monitor blood pressure. Consequently, datasets of PPG signals acquired in daily life are valuable for algorithm development. The aim of this pilot study was to assess the feasibility of acquiring PPG data in daily life. A single subject was asked to wear a wrist-worn PPG sensor six days a week for four weeks, and to keep a diary of daily activities. The sensor was worn for 75.0% of the time, signals were acquired for 60.6% of the time, and signal quality was high for 30.5% of the time. This small pilot study demonstrated the feasibility of acquiring PPG data during daily living. Key lessons were learnt for future studies: (i) devices which are waterproof and require charging less frequently may provide signals for a greater proportion of the time; (ii) data should either be stored on the device or streamed via a reliable connection to a second device for storage; (iii) it may be beneficial to acquire signals during the night or during periods of low activity to achieve high signal quality; and (iv) there are several promising areas for PPG algorithm development including the design of pulse wave analysis techniques to track changes in cardiovascular properties in daily life.

Photoplethysmographic Time-Domain Heart Rate Measurement Algorithm for Resource-Constrained Wearable Devices and its Implementation

This paper presents an algorithm for the measurement of the human heart rate, using photoplethysmography (PPG), i.e., the detection of the light at the skin surface. The signal from the PPG sensor is processed in time-domain; the peaks in the preprocessed and conditioned PPG waveform are detected by using a peak detection algorithm to find the heart rate in real time. Apart from the PPG sensor, the accelerometer is also used to detect body movement and to indicate the moments in time, for which the PPG waveform can be unreliable. This paper describes in detail the signal conditioning path and the modified algorithm, and it also gives an example of implementation in a resource-constrained wrist-wearable device. The algorithm was evaluated by using the publicly available PPG-DaLia dataset containing samples collected during real-life activities with a PPG sensor and accelerometer and with an ECG signal as ground truth. The quality of the results is comparable to the other algorithms from the literature, while the required hardware resources are lower, which can be significant for wearable applications.

A Simple Unsupervised, Real-time Clustering Method for Arterial Blood Pressure Signal Classification

Biomedical signal analysis often depends on methods to detect and distinguish abnormal or high noise/artifact signal from normal signal. A novel unsupervised clustering method suitable for resource constrained embedded computing contexts, classifies arterial blood pressure (ABP) beat cycles as normal or abnormal. A cycle detection algorithm delineates beat cycles, so that each cycle can be modeled by a continuous time Fourier series decomposition. The Fourier series parameters are a discrete vector representation for the cycle along with the cycle period. The sequence of cycle parameter vectors is a non-uniform discrete time representation for the ABP signal that provides feature input for a clustering algorithm. Clustering uses a weighted distance function of normalized cycle parameters to ignore cycle differences due to natural and expected physiological modulations, such as respiratory modulation, while accounting for differences due to other causes, such as patient movement artifact. Challenging cardiac surgery patient signal examples indicate effectiveness.

Use of zero-frequency resonator for automatically detecting systolic peaks of photoplethysmogram signal

This work investigates the application of zero-frequency resonator (ZFR) for detecting systolic peaks of photoplethysmogram (PPG) signals. Based on the authors' studies, they propose an automated noise-robust method, which consists of the central difference operation, the ZFR, the mean subtraction and averaging, the peak determination, and the peak rejection/acceptance rule. The method is evaluated using different kinds of PPG signals taken from the standard MIT-BIH polysomnographic database and Complex Systems Laboratory database and the recorded PPG signals at their Biomedical System Lab. The method achieves an average sensitivity (Se) of 99.95%, positive predictivity (Pp) of 99.89%, and overall accuracy (OA) of 99.84% on a total number of 116,673 true peaks. Evaluation results further demonstrate the robustness of the ZFR-based method for noisy PPG signals with a signal-to-noise ratio (SNR) ranging from 30 to 5 dB. The method achieves an average Se = 99.76%, Pp = 99.84%, and OA = 99.60% for noisy PPG signals with a SNR of 5 dB. Various results show that the method yields better detection rates for both noise-free and noisy PPG signals. The method is simple and reliable as compared with the complexity of signal processing techniques and detection performance of the existing detection methods.

Estimation of Heart Rate Recovery after StairClimbing Using aWrist-Worn Device

Heart rate recovery (HRR) after physical exercise is a convenient method to assess cardiovascular autonomic function. Since stair climbing is a common daily activity, usually followed by a slow walking or rest, this type of activity can be considered as an alternative HRR test. The present study explores the feasibility to estimate HRR parameters after stair climbing using a wrist-worn device with embedded photoplethysmography and barometric pressure sensors. A custom-made wrist-worn device, capable of acquiring heart rate and altitude, was used to estimate the time-constant of exponential decay τ, the short-term time constant S, and the decay of heart rate in 1 min D. Fifty-four healthy volunteers were instructed to climb the stairs at three different climbing rates. When compared to the reference electrocardiogram, the absolute and percentage errors were found to be ≤ 21.0 s (≤ 52.7%) for τ, ≤ 0.14 (≤ 19.2%) for S, and ≤ 7.16 bpm (≤ 20.7%) for D in 75% of recovery phases available for analysis. The proposed approach to monitoring HRR parameters in an unobtrusive way may complement information provided by personal health monitoring devices (e.g., weight loss, physical activity), as well as have clinical relevance when evaluating the efficiency of cardiac rehabilitation program outside the clinical setting.

Embedded Dimension and Time Series Length. Practical Influence on Permutation Entropy and Its Applications

Permutation Entropy (PE) is a time series complexity measure commonly used in a variety of contexts, with medicine being the prime example. In its general form, it requires three input parameters for its calculation: time series length N, embedded dimension m, and embedded delay τ. Inappropriate choices of these parameters may potentially lead to incorrect interpretations. However, there are no specific guidelines for an optimal selection of N, m, or τ, only general recommendations such as N>>m!, τ=1, or m=3,…,7. This paper deals specifically with the study of the practical implications of N>>m!, since long time series are often not available, or non-stationary, and other preliminary results suggest that low N values do not necessarily invalidate PE usefulness. Our study analyses the PE variation as a function of the series length N and embedded dimension m in the context of a diverse experimental set, both synthetic (random, spikes, or logistic model time series) and real–world (climatology, seismic, financial, or biomedical time series), and the classification performance achieved with varying N and m. The results seem to indicate that shorter lengths than those suggested by N>>m! are sufficient for a stable PE calculation, and even very short time series can be robustly classified based on PE measurements before the stability point is reached. This may be due to the fact that there are forbidden patterns in chaotic time series, not all the patterns are equally informative, and differences among classes are already apparent at very short lengths.

Assessment of Signal Processing Methods for Measuring the Respiratory Rate in the Neonatal Intensive Care Unit

Knowledge of the pathological instabilities in the breathing pattern can provide valuable insights into the cardiorespiratory status of the critically-ill infant as well as their maturation level. This paper is concerned with the measurement of respiratory rate in premature infants. We compare the rates estimated from the chest impedance pneumogram, the ECG-derived respiratory rhythms, and the PPG-derived respiratory rhythms against those measured in the reference standard of breath detection provided by attending clinical staff during 165 manual breath counts. We demonstrate that accurate RR estimates can be produced from all sources for RR in the 40-80 bpm (breaths per min) range. We also conclude that the use of indirect methods based on the ECG or the PPG poses a fundamental challenge in this population due to their poor behavior at fast breathing rates (upward of 80 bpm).

A novel and low-complexity peak detection algorithm for heart rate estimation from low-amplitude photoplethysmographic (PPG) signals

Low-amplitude PPG signals are more affected by noise contamination and other undesirable effects because the signal strength is comparable to noise power. Although several authors claim that decreases in the amplitude of the PPG wave should be addressed from signal acquisition and conditioning stages such decreases can also be associated with changes in the patient condition. In that instance, it is important to ensure continuous and reliable HR monitoring which, in turn, depends on how robust is the peak detection method. Numerous efforts have been made to develop algorithms for accurate PPG peak detection under high motion artefact conditions. However, little has been done regarding peak detection in low-amplitude PPG signals. In an attempt to address this issue, a novel and simple peak detection algorithm for PPG signals was proposed. Results show that our method could be a good contribution for robust strategies that can dynamically adapt their peak detection method to circumstances in which a decrease in the amplitude of the PPG signal is expected. Still, more extensive testing under a wide range of conditions (e.g. intensive physical exercise) is needed to perform a rigorous validation.

Detection of atrial fibrillation using a wrist-worn device

OBJECTIVE

This study proposes an algorithm for the detection of atrial fibrillation (AF), designed to operate on extended photoplethysmographic (PPG) signals recorded using a wrist-worn device of own design.

APPROACH

Robustness against false alarms is achieved by means of signal quality assessment and different techniques for suppression of ectopic beats, bigeminy, and respiratory sinus arrhythmia. The decision logic is based on our previously proposed RR interval-based AF detector, but modified to account for differences between interbeat intervals in the ECG and the PPG. The detector is evaluated on simulated PPG signals as well as on clinical PPG signals recorded during cardiac rehabilitation after myocardial infarction.

MAIN RESULTS

Analysis of the clinical signals showed that 1.5 false alarms were on average produced per day with a sensitivity of 72.0% and a specificity of 99.7% when 89.2% of the database was available for analysis, whereas as many as 15 when the RR interval-based AF detector, boosted by accelerometer information for signal quality assessment, was used. However, a sensitivity of 97.2% and a specificity of 99.6% were achieved when increasing the demands on signal quality so that 50% was available for analysis.

SIGNIFICANCE

The proposed detector offers promising performance and is particularly well-suited for implementation in low-power wearable devices, e.g. wrist-worn devices, with significance in mass screening applications.

Windows Into Human Health Through Wearables Data Analytics

Background

Wearable sensors (wearables) have been commonly integrated into a wide variety of commercial products and are increasingly being used to collect and process raw physiological parameters into salient digital health information. The data collected by wearables are currently being investigated across a broad set of clinical domains and patient populations. There is significant research occurring in the domain of algorithm development, with the aim of translating raw sensor data into fitness- or health-related outcomes of interest for users, patients, and health care providers.

Objectives

The aim of this review is to highlight a selected group of fitness- and health-related indicators from wearables data and to describe several algorithmic approaches used to generate these higher order indicators.

Methods

A systematic search of the Pubmed database was performed with the following search terms (number of records in parentheses): Fitbit algorithm (18), Apple Watch algorithm (3), Garmin algorithm (5), Microsoft Band algorithm (8), Samsung Gear algorithm (2), Xiaomi MiBand algorithm (1), Huawei Band (Watch) algorithm (2), photoplethysmography algorithm (465), accelerometry algorithm (966), ECG algorithm (8287), continuous glucose monitor algorithm (343). The search terms chosen for this review are focused on algorithms for wearable devices that dominated the commercial wearables market between 2014-2017 and that were highly represented in the biomedical literature. A second set of search terms included categories of algorithms for fitness-related and health-related indicators that are commonly used in wearable devices (e.g. accelerometry, PPG, ECG). These papers covered the following domain areas: fitness; exercise; movement; physical activity; step count; walking; running; swimming; energy expenditure; atrial fibrillation; arrhythmia; cardiovascular; autonomic nervous system; neuropathy; heart rate variability; fall detection; trauma; behavior change; diet; eating; stress detection; serum glucose monitoring; continuous glucose monitoring; diabetes mellitus type 1; diabetes mellitus type 2. All studies uncovered through this search on commercially available device algorithms and pivotal studies on sensor algorithm development were summarized, and a summary table was constructed using references generated by the literature review as described (Table 1).

Conclusions

Wearable health technologies aim to collect and process raw physiological or environmental parameters into salient digital health information. Much of the current and future utility of wearables lies in the signal processing steps and algorithms used to analyze large volumes of data. Continued algorithmic development and advances in machine learning techniques will further increase analytic capabilities. In the context of these advances, our review aims to highlight a range of advances in fitness- and other health-related indicators provided by current wearable technologies.

Sinus or not: a new beat detection algorithm based on a pulse morphology quality index to extract normal sinus rhythm beats from wrist-worn photoplethysmography recordings

OBJECTIVE

Wrist-worn photoplethysmography (PPG) can enable free-living physiological monitoring of people during diverse activities, ranging from sleep to physical exercise. In many applications, it is important to remove the pulses not related to sinus rhythm beats from the PPG signal before using it as a cardiovascular descriptor. In this manuscript, we propose an algorithm to assess the morphology of the PPG signal in order to reject non-sinus rhythm pulses, such as artefacts or pulses related to arrhythmic beats.

APPROACH

The algorithm segments the PPG signal into individual pulses and dynamically evaluates their morphological likelihood of being normal sinus rhythm pulses via a template-matching approach that accounts for the physiological variability of the signal. The normal sinus rhythm likelihood of each pulse is expressed as a quality index that can be employed to reject artefacts and pulses related to arrhythmic beats.

MAIN RESULTS

Thresholding the pulse quality index enables near-perfect detection of normal sinus rhythm beats by rejecting most of the non-sinus rhythm pulses (positive predictive value 98%-99%), both in healthy subjects and arrhythmic patients. The rejection of arrhythmic beats is almost complete (sensitivity to arrhythmic beats 7%-3%), while the sensitivity to sinus rhythm beats is not compromised (96%-91%).

SIGNIFICANCE

The developed algorithm consistently detects normal sinus rhythm beats in a PPG signal by rejecting artefacts and, as a first of its kind, arrhythmic beats. This increases the reliability in the extraction of features which are adversely influenced by the presence of non-sinus pulses, whether related to inter-beat intervals or to pulse morphology, from wrist-worn PPG signals recorded in free-living conditions.

Photoplethysmography beat detection and pulse morphology quality assessment for signal reliability estimation

Photoplethysmography (PPG) is one of the key technologies for unobtrusive physiological monitoring, with ongoing attempts to use it in several medical fields, ranging from night to night sleep analysis to continuous cardiac arrhythmia monitoring. However, the PPG signals are susceptible to be corrupted by noise and artifacts, caused, e.g., by limb or sensor movement. These artifacts affect the morphology of PPG waves and prevent the accurate detection and localization of beats and subsequent cardiovascular feature extraction. In this paper a new algorithm for beat detection and pulse quality assessment is described. The algorithm segments the PPG signal in pulses, localizes each beat and grades each segment with a quality index. The obtained index results from a comparison between each pulse and a template derived from the surrounding pulses, by mean of dynamic time warping barycenter averaging. The quality index is used to discard corrupted pulse beats. The algorithm is evaluated by comparing the detected beats with annotated PPG signals and the results are published over the same data. The described method achieves an improved sensitivity and a higher predictive value.

HEART DISEASES DETECTION FROM NOISY RECORDINGS OF SMARTPHONE DEVICES

This paper aims to develop an algorithm to detect heart diseases through ordinary smartphones without additional equipment for cost accessibility. Among various vital signs emitted by organs, sounds can be easily observed and carry ample information. However, these sounds are small and noisy. Detecting anomalies involves great challenges in signal processing. This study presents a novel method that overcomes noises to estimate cardiovascular health. We use time-scale techniques in time series analysis to extract disease traits and suppress excessive ambient noises. Using datasets from PhysioNet, our model achieved a nearly 100% accuracy in heart disease diagnosis. Our approach also performs well under excessive noises for diseases producing heart murmurs. With heavy noise contaminated signals, training accuracy still closed to 100%, and the testing accuracy still remained around 84%.

Motion and Noise Artifact-Resilient Atrial Fibrillation Detection using a Smartphone

We have recently found that our previously-developed atrial fibrillation (AF) detection algorithm for smartphones can give false positives when subjects' fingers or hands move, as we rely on proper finger placement over the smartphone camera to collect the signal of interest. Specifically, smartphone camera pulsatile signals that are obtained from normal sinus rhythm (NSR) subjects but are corrupted by motion and noise artifacts (MNAs) are frequently detected as AF. AF and motion-corrupted episodes have the similar characteristic that pulse-to-pulse intervals (PPIs) are irregular. We have developed an MNA-resilient smartphone-based AF detection algorithm that first discriminates and eliminates MNA-corrupted episodes in smartphone camera recordings, and then detects AF in MNA-free recordings. We found that MNA-corrupted episodes have highly-varying pulse slope, large turning point ratio, or large kurtosis values in smartphone signals compared to MNA-free AF and NSR episodes. We first use these three metrics for MNA discrimination and exclusion. Then, AF is detected in MNA-free signals using our previous algorithm. The capability to discriminate MNAs and AFs separately in smartphone signals increases the specificity of AF detection. To evaluate the performance of the proposed MNA-resilient AF algorithm, 99 subjects, including 88 study participants with AF at baseline and in NSR after electrical cardioversion as well as 11 participants with MNA-corrupted NSR, were recruited. Using iPhone 4S, 5S, and 6S models, we collected 2-minute pulsatile time series from each subject. The clinical results show that the accuracy, sensitivity and specificity of the proposed AF algorithm are 0.97, 0.98, 0.97, respectively, which are higher than those of the previous AF algorithm.

Dedicated cardiac rehabilitation wearable sensor and its clinical potential

We describe a wearable sensor developed for cardiac rehabilitation (CR) exercise. To effectively guide CR exercise, the dedicated CR wearable sensor (DCRW) automatically recommends the exercise intensity to the patient by comparing heart rate (HR) measured in real time with a predefined target heart rate zone (THZ) during exercise. The CR exercise includes three periods: pre-exercise, exercise with intensity guidance, and post-exercise. In the pre-exercise period, information such as THZ, exercise type, exercise stage order, and duration of each stage are set up through a smartphone application we developed for iPhones and Android devices. The set-up information is transmitted to the DCRW via Bluetooth communication. In the period of exercise with intensity guidance, the DCRW continuously estimates HR using a reflected pulse signal in the wrist. To achieve accurate HR measurements, we used multichannel photo sensors and increased the chances of acquiring a clean signal. Subsequently, we used singular value decomposition (SVD) for de-noising. For the median and variance of RMSEs in the measured HRs, our proposed method with DCRW provided lower values than those from a single channel-based method and template-based multiple-channel method for the entire exercise stage. In the post-exercise period, the DCRW transmits all the measured HR data to the smartphone application via Bluetooth communication, and the patient can monitor his/her own exercise history.

Heartbeat detection in multimodal physiological signals using signal quality assessment based on sample entropy

This paper presents a novel technique to identify heartbeats in multimodal data using electrocardiogram (ECG) and arterial blood pressure (ABP) signals. Multiple physiological signals such as ECG, ABP, and Respiration are often recorded in parallel from the activity of heart. These signals generally possess related information as they are generated by the same physical system. The ECG and ABP correspond to the same phenomenon of contraction and relaxation activity of heart. Multiple signals acquired from various sensors are generally processed independently, thus discarding the information from other measurements. In the estimation of heart rate and heart rate variability, the R peaks are generally identified from ECG signal. Efficient detection of R-peaks in electrocardiogram (ECG) is a key component in the estimation of clinically relevant parameters from ECG. However, when the signal is severely affected by undesired artifacts, this becomes a challenging task. Sometimes in clinical environment, other physiological signals reflecting the cardiac activity such as ABP signal are also acquired simultaneously. Under the availability of such multimodal signals, the accuracy of R peak detection methods can be improved using sensor-fusion techniques. In the proposed method, the sample entropy (SampEn) is used as a metric for assessing the noise content in the physiological signal and the R peaks in ECG and the systolic peaks in ABP signals are fused together to enhance the efficiency of heartbeat detection. The proposed method was evaluated on the 100 records from the computing in cardiology challenge 2014 training data set. The performance parameters are: sensitivity (Se) and positive predictivity (PPV). The unimodal R peaks detector achieved: Se _gross = 99.40%, PPV _gross = 99.29%, Se _average = 99.37%, PPV _average = 99.29%. Similarly unimodal BP delineator achieved Se _gross = 99.93%, PPV _gross = 99.99%, Se _average = 99.93%, PPV _average = 99.99% whereas, the proposed multimodal beat detector achieved: Se _gross = 99.65%, PPV _gross = 99.91%, Se _average = 99.68%, PPV _average = 99.91%.

An unsupervised learning for robust cardiac feature derivation from PPG signals

We propose here derivation algorithms for physiological parameters like beat start point, systolic peak, pulse duration, peak-to-peak distance related to heart rate, dicrotic minima, diastolic peak from Photoplethysmogram (PPG) signals robustly. Our methods are based on unsupervised learning mainly following morphology as well as discrete nature of the signal. Statistical learning has been used as a special aid to infer most probable feature values mainly to cope up with presence of noise, which is assumed to be insignificant compared to signal values at each investigation window. Performance of the proposed method is found to be better than other standard methods, yielding precision and sensitivity more than 97% obtained from three real life data sets.

A model for generating synthetic arterial blood pressure

A new model capable of simulating many important aspects of human arterial blood pressure (ABP) is proposed. Both data-driven approach and physiological principles have been applied to describe the time series of diastolic, systolic, dicrotic notch and dicrotic peak pressure points. Major static and dynamic features of the model can be prescribed by the user, including heart rate, mean systolic and diastolic pressure, and the corresponding physiological control quantities, such as baroreflex sensitivity coefficient and Windkessel time constant. A realistic ABP generator can be used to compile a virtual database of signals reflecting individuals with different clinical conditions and signals containing common artefacts. The ABP model permits to create a platform to assess a wide range of biomedical signal processing approaches and be used in conjunction with, e.g. Kalman filters to improve the quality of ABP signals.

Modeling of the photoplethysmogram during atrial fibrillation

A phenomenological model for simulating the photoplethysmogram (PPG) during atrial fibrillation (AF) is proposed. The simulated PPG is solely based on RR interval information, and, therefore, any annotated ECG database can be used to model sinus rhythm, AF, or rhythms with premature beats. A PPG pulse is modeled by a linear combination of a log-normal and two Gaussian waveforms. The model PPG is obtained by placing individual pulses according to the RR intervals so that a connected signal is created. The model is evaluated on synchronously recorded ECG and PPG signals from the MIMIC and the University of Queensland Vital Signs Dataset databases. The results show that the model PPG signals closely resemble real signal for sinus rhythm, premature beats, as well as for AF. The model is used to study the performance of a low-complexity RR interval-based AF detector on simulated PPG signals with five different pulse types generated using the MIT-BIH AF database at signal-to-noise ratios (SNRs) from 0 to 30dB. PPGs composed of pulses with a dicrotic notch tend to increase the rate of false alarms, especially at lower SNRs. The model is capable of generating simulated PPG signals from RR interval series with sinus rhythm, AF, and premature beats. Considering the lack of annotated, public PPG databases with arrhythmias, the simulation of realistic PPG signals based on annotated ECG signals is expected to facilitate the development and testing of PPG-specific AF detectors.

Robust QRS peak detection by multimodal information fusion of ECG and blood pressure signals

QRS peak detection is a challenging problem when ECG signal is corrupted. However, additional physiological signals may also provide information about the QRS position. In this study, we focus on a unique benchmark provided by PhysioNet/Computing in Cardiology Challenge 2014 and Physiological Measurement focus issue: robust detection of heart beats in multimodal data, which aimed to explore robust methods for QRS detection in multimodal physiological signals. A dataset of 200 training and 210 testing records are used, where the testing records are hidden for evaluating the performance only. An information fusion framework for robust QRS detection is proposed by leveraging existing ECG and ABP analysis tools and combining heart beats derived from different sources. Results show that our approach achieves an overall accuracy of 90.94% and 88.66% on the training and testing datasets, respectively. Furthermore, we observe expected performance at each step of the proposed approach, as an evidence of the effectiveness of our approach. Discussion on the limitations of our approach is also provided.

Primary study for detection of arterial blood pressure waveform components

The paper presents a technique to detect significant systolic peaks, the percussion (P) and tidal peak (T) and diastolic peak (D) from the arterial blood pressure (ABP) waveform. The technique is aimed at robust detection even in presence of significant noise. Singular Value Decomposition (SVD) based dominant period extraction of the ABP waveform followed by wavelet transform and local peak detection is applied to detect the points of interest. MIMIC-II ABP databse serves as a training dataset to select SVD and wavelet transform parameters and CSL Benchmark database is used to analyze the technique. Salient systolic peak detection for the CSL dataset was performed with positive predictive value and sensitivity figures of 98.48% and 99.24% respectively.

An automatic systolic peak detector of blood pressure waveforms using 4th order cumulants

The arterial blood pressure (ABP) holds a lot of information about the cardiovascular system. To analyse the ABP signal, at first the pulse wave has to be detected correctly. Due to influences, e.g. of noise, an accurate beat detection is a challenging task. In this work, a novel real-time ABP detector based on higher-order statistics is presented. The method uses the 4th order cumulants for ABP-peak detection. To evaluate this detector, the Fantasia database freely available at physionet was used. In this database, 142,936 systolic peaks were available to check the efficiency of the beat detector. A sensitivity of 99.91% and a positive predictive value of 99.50% were achieved with the novel method.

Smartphone-Based Cardiac Rehabilitation Program: Feasibility Study

We introduce a cardiac rehabilitation program (CRP) that utilizes only a smartphone, with no external devices. As an efficient guide for cardiac rehabilitation exercise, we developed an application to automatically indicate the exercise intensity by comparing the estimated heart rate (HR) with the target heart rate zone (THZ). The HR is estimated using video images of a fingertip taken by the smartphone's built-in camera. The introduced CRP app includes pre-exercise, exercise with intensity guidance, and post-exercise. In the pre-exercise period, information such as THZ, exercise type, exercise stage order, and duration of each stage are set up. In the exercise with intensity guidance, the app estimates HR from the pulse obtained using the smartphone's built-in camera and compares the estimated HR with the THZ. Based on this comparison, the app adjusts the exercise intensity to shift the patient's HR to the THZ during exercise. In the post-exercise period, the app manages the ratio of the estimated HR to the THZ and provides a questionnaire on factors such as chest pain, shortness of breath, and leg pain during exercise, as objective and subjective evaluation indicators. As a key issue, HR estimation upon signal corruption due to motion artifacts is also considered. Through the smartphone-based CRP, we estimated the HR accuracy as mean absolute error and root mean squared error of 6.16 and 4.30bpm, respectively, with signal corruption due to motion artifacts being detected by combining the turning point ratio and kurtosis.

An Algorithm for Real-Time Pulse Waveform Segmentation and Artifact Detection in Photoplethysmograms

Photoplethysmography has been used in a wide range of medical devices for measuring oxygen saturation, cardiac output, assessing autonomic function, and detecting peripheral vascular disease. Artifacts can render the photoplethysmogram (PPG) useless. Thus, algorithms capable of identifying artifacts are critically important. However, the published PPG algorithms are limited in algorithm and study design. Therefore, the authors developed a novel embedded algorithm for real-time pulse waveform (PWF) segmentation and artifact detection based on a contour analysis in the time domain. This paper provides an overview about PWF and artifact classifications, presents the developed PWF analysis, and demonstrates the implementation on a 32-bit ARM core microcontroller. The PWF analysis was validated with data records from 63 subjects acquired in a sleep laboratory, ergometry laboratory, and intensive care unit in equal parts. The output of the algorithm was compared with harmonized experts' annotations of the PPG with a total duration of 31.5 h. The algorithm achieved a beat-to-beat comparison sensitivity of 99.6%, specificity of 90.5%, precision of 98.5%, and accuracy of 98.3%. The interrater agreement expressed as Cohen's kappa coefficient was 0.927 and as F-measure was 0.990. In conclusion, the PWF analysis seems to be a suitable method for PPG signal quality determination, real-time annotation, data compression, and calculation of additional pulse wave metrics such as amplitude, duration, and rise time.

Empirical wavelet transform-based delineator for arterial blood pressure waveforms

Arterial blood pressure (ABP) waveforms provide plenty of pathophysiological information about the cardiovascular system. ABP pulse analysis is a routine process used to investigate the health status of the cardiovascular system. ABP pulses correspond to the contraction and relaxation phenomena of the human heart. The contracting or pumping phase of the cardiac chamber corresponds to systolic pressure, whereas the resting or filling phase of the cardiac chamber corresponds to diastolic pressure. An ABP waveform commonly comprises systolic peak, diastolic onset, dicrotic notch, and dicrotic peak. Automatic ABP delineation is extremely important for various biomedical applications. In this paper, a delineator for onset and systolic peak detection in ABP signals is presented. The algorithm uses a recently developed empirical wavelet transform (EWT) for the delineation of arterial blood pulses. EWT is a new mathematical tool used to decompose a given signal into different modes and is based on the design of an adaptive wavelet filter bank. The performance of the proposed delineator is evaluated and validated over ABP waveforms of standard databases, such as the MIT-BIH Polysomnoghaphic Database, Fantasia Database, and Multiparameter Intelligent Monitoring in Intensive Care Database. In terms of pulse onset detection, the proposed delineator achieved an average error rate of 0.11%, sensitivity of 99.95%, and positive predictivity of 99.92%. In a similar manner for systolic peak detection, the proposed delineator achieved an average error rate of 0.10%, sensitivity of 99.96%, and positive predictivity of 99.92%.

Robust off-line heartbeat detection using ECG and pressure-signals

Artefacts in pressure- and ECG-signals generally arise due to different causes. Therefore, the combined analysis of both signals can increase the effectiveness of heartbeat detection compared to analysis using solely ECG-signals. In this paper, we present an algorithm for heartbeat annotation by combining the analysis of both the pressure- and ECG-signals. The novelties of our algorithm are as follows: (1) development of a new approach for annotating heartbeats using pressure-signals, (2) development of a mechanism that identifies and corrects paced rhythms, and (3) development of a noise detection approach. Our algorithm is tested on the datasets from the extended phase of the Physionet CINC-2014 challenge and produces an overall score of 87.31%. Finally, we put forth several recommendations that could further improve our algorithm.

An adaptive real-time beat detection method for continuous pressure signals

A novel adaptive real-time beat detection method for pressure related signals is proposed by virtue of an enhanced mean shift (EMS) algorithm. This EMS method consists of three components: spectral estimates of the heart rate, enhanced mean shift algorithm and classification logic. The Welch power spectral density method is employed to estimate the heart rate. An enhanced mean shift algorithm is then applied to improve the morphologic features of the blood pressure signals and detect the maxima of the blood pressure signals effectively. Finally, according to estimated heart rate, the classification logic is established to detect the locations of misdetections and over detections within the accepted heart rate limits. The parameters of the algorithm are adaptively tuned for ensuring its robustness in various heart rate conditions. The performance of the EMS method is validated with expert annotations of two standard databases and a non-invasive dataset. The results from this method show that the sensitivity (Se) and positive predictivity (+P) are significantly improved (i.e., Se > 99.45 %, +P > 98.28 %, and p value 0.0474) by comparison with the existing scheme from the previously published literature.

Toward Ubiquitous Blood Pressure Monitoring via Pulse Transit Time: Theory and Practice

Ubiquitous blood pressure (BP) monitoring is needed to improve hypertension detection and control and is becoming feasible due to recent technological advances such as in wearable sensing. Pulse transit time (PTT) represents a well-known potential approach for ubiquitous BP monitoring. The goal of this review is to facilitate the achievement of reliable ubiquitous BP monitoring via PTT. We explain the conventional BP measurement methods and their limitations; present models to summarize the theory of the PTT-BP relationship; outline the approach while pinpointing the key challenges; overview the previous work toward putting the theory to practice; make suggestions for best practice and future research; and discuss realistic expectations for the approach.

Fuzzy entropy based motion artifact detection and pulse rate estimation for fingertip photoplethysmography

The paper presents a fingertip photoplethysmography (PPG) based technique to estimate the pulse rate of the subject. The PPG signal obtained from a pulse oximeter is used for the analysis. The input samples are corrupted with motion artifacts due to minor motion of the subjects. Entropy measure of the input samples is used to detect the motion artifacts and estimate the pulse rate. A three step methodology is adapted to identify and classify signal peaks as true systolic peaks or artifact. CapnoBase database and CSL Benchmark database are used to analyze the technique and pulse rate estimation was performed with positive predictive value and sensitivity figures of 99.84% and 99.32% respectively for CapnoBase and 98.83% and 98.84% for CSL database respectively.

Statistical analysis of heart rate and heart rate variability monitoring through the use of smart phone cameras

Video recordings of finger tips made using a smartphone camera contain a pulsatile component caused by the cardiac pulse equivalent to that present in a photoplethysmographic signal. By performing peak detection on the pulsatile signal it is possible to extract a continuous heart rate signal. We performed direct comparisons between 5-lead electrocardiogram based heart rate variability measurements and those obtained from an iPhone 4s and Motorola Droid derived pulsatile signal to determine the accuracy of heart rate variability measurements obtained from the smart phones. Monitoring was performed in the supine and tilt positions for independent iPhone 4s (2 min recordings, n=9) and Droid (5 min recordings, n=13) experiments, and the following heart rate and heart rate variability parameters were estimated: heart rate, low frequency power, high frequency power, ratio of low to high frequency power, standard deviation of the RR intervals, and root mean square of successive RR-differences. Results demonstrate that accurate heart rate variability parameters can be obtained from smart phone based measurements.

Atrial fibrillation detection using a smart phone

We hypothesized that an iPhone 4s can be used to detect atrial fibrillation (AF) based on its ability to record a pulsatile photoplethysmogram (PPG) signal from a fingertip using the built-in camera lens. To investigate the capability of the iPhone 4s for AF detection, 25 prospective subjects with AF pre- and post-electrical cardioversion were recruited. Using an iPhone 4s, we collected 2-minute pulsatile time series. We investigated 3 statistical methods consisting of the Root Mean Square of Successive Differences (RMSSD), the Shannon entropy (ShE) and the Sample entropy (SampE), which have been shown to be useful tools for AF assessment. The beat-to-beat accuracy for RMSSD, ShE and SampE was found to be 0.9844, 0.8494 and 0.9552, respectively. It should be recognized that for clinical applications, the most relevant objective is to detect the presence of AF or normal sinus rhythm (NSR) in the data. Using this criterion, we achieved an accuracy of 100% for both detecting the presence of either AF or NSR.