1
|
Magalhaes ILF, Martins PH, Faleiro BT, Vidigal THDA, Santos FR, Carvalho LS, Santos AJ. Complete phylogeny of Micrathena spiders suggests multiple dispersal events among Neotropical rainforests, islands and landmasses, and indicates that Andean orogeny promotes speciation. Cladistics 2024. [PMID: 38861251 DOI: 10.1111/cla.12593] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Revised: 04/24/2024] [Accepted: 05/17/2024] [Indexed: 06/12/2024] Open
Abstract
The Neotropical region is the most diverse on the planet, largely owing to its mosaic of tropical rainforests. Multiple tectonic and climatic processes have been hypothesized to contribute to generating this diversity, including Andean orogeny, the closure of the Isthmus of Panama, the GAARlandia land bridge and historical connections among currently isolated forests. Micrathena spiders are diverse and widespread in the region, and thus a complete phylogeny of this genus allows the testing of hypotheses at multiple scales. We estimated a complete, dated phylogeny using morphological data for 117 Micrathena species and molecular data of up to five genes for a subset of 79 species. Employing eventc-based approaches and biogeographic stochastic mapping while considering phylogenetic uncertainty, we estimated ancestral distributions, the timing and direction of dispersal events and diversification rates among areas. The phylogeny is generally robust, with uncertainty in the position of some of the species lacking sequences. Micrathena started diversifying around 25 Ma. Andean cloud forests show the highest in-situ speciation, while the Amazon is the major dispersal source for adjacent areas. The Dry Diagonal generated few species and is a sink of diversity. Species exchange between Central and South America involved approximately 23 dispersal events and started ~20 Ma, which is consistent with a Miocene age for the Isthmus of Panama closure. We inferred four dispersal events from Central America to the Antilles in the last 20 Myr, indicating the spiders did not reach the islands through the GAARlandia land bridge. We identified important species exchange routes among the Amazon, Andean cloud forests and Atlantic forests during the Plio-Pleistocene. Sampling all species of the genus was fundamental to the conclusions above, especially in identifying the Andean forests as the area that generated the majority of species. This highlights the importance of complete taxonomic sampling in biogeographic studies.
Collapse
Affiliation(s)
- Ivan L F Magalhaes
- Museo Argentino de Ciencias Naturales "Bernardino Rivadavia", Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Av. Ángel Gallardo 470, C1405DJR, Buenos Aires, Argentina
| | - Pedro H Martins
- Departamento de Zoologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Av. Antônio Carlos 6627, 31270-901, Belo Horizonte, Minas Gerais, Brazil
| | - Bárbara T Faleiro
- Departamento de Zoologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Av. Antônio Carlos 6627, 31270-901, Belo Horizonte, Minas Gerais, Brazil
| | - Teofânia H D A Vidigal
- Departamento de Zoologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Av. Antônio Carlos 6627, 31270-901, Belo Horizonte, Minas Gerais, Brazil
| | - Fabrício R Santos
- Departamento de Genética, Ecologia e Evolução, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Av. Antônio Carlos 6627, 31270-901, Belo Horizonte, Minas Gerais, Brazil
| | - Leonardo S Carvalho
- Universidade Federal do Piauí, Campus Amílcar Ferreira Sobral, BR 343, KM 3.5, Bairro Meladão, s/no. CEP 6, 64808-660, Floriano, Piauí, Brazil
| | - Adalberto J Santos
- Departamento de Zoologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Av. Antônio Carlos 6627, 31270-901, Belo Horizonte, Minas Gerais, Brazil
| |
Collapse
|
2
|
VanDyck MW, Long JH, Baker RH, Hayashi CY, Diaz C. Special Prey, Special Glue: NMR Spectroscopy on Aggregate Glue Components of Moth-Specialist Spiders, Cyrtarachninae. Biomimetics (Basel) 2024; 9:256. [PMID: 38786466 PMCID: PMC11117802 DOI: 10.3390/biomimetics9050256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Revised: 04/16/2024] [Accepted: 04/19/2024] [Indexed: 05/25/2024] Open
Abstract
Orb-weaver spiders produce upwards of seven different types of silk, each with unique material properties. We focus on the adhesive within orb-weaving spider webs, aggregate glue silk. These droplets are composed of three main components: water, glycoproteins, and a wide range of low molecular mass compounds (LMMCs). These LMMCs are known to play a crucial role in maintaining the material properties of the glycoproteins, aid in water absorption from the environment, and increase surface adhesion. Orb-weavers within the Cyrtarachninae subfamily are moth specialists and have evolved glue droplets with novel material properties. This study investigated the biochemical composition and diversity of the LMMCs present in the aggregate glue of eight moth-specialist species and compared them with five generalist orb-weavers using nuclear magnetic resonance (NMR) spectroscopy. We hypothesized that the novel drying ability of moth-specialist glue was accompanied by novel LMMCs and lower overall percentages by silk weight of LMMCs. We measured no difference in LMMC weight by the type of prey specialization, but observed novel compositions in the glue of all eight moth-catching species. Further, we quantified the presence of a previously reported but unidentified compound that appears in the glue of all moth specialists. These silks can provide insight into the functions of bioadhesives and inform our own synthetic adhesives.
Collapse
Affiliation(s)
- Max W. VanDyck
- Department of Biology, Vassar College, Poughkeepsie, NY 12604, USA; (M.W.V.)
- Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
| | - John H. Long
- Department of Biology, Vassar College, Poughkeepsie, NY 12604, USA; (M.W.V.)
- Department of Cognitive Science, Vassar College, Poughkeepsie, NY 12604, USA
| | - Richard H. Baker
- Division of Invertebrate Zoology and Institute for Comparative Genomics, American Museum of Natural History, New York, NY 10024, USA; (R.H.B.); (C.Y.H.)
| | - Cheryl Y. Hayashi
- Division of Invertebrate Zoology and Institute for Comparative Genomics, American Museum of Natural History, New York, NY 10024, USA; (R.H.B.); (C.Y.H.)
| | - Candido Diaz
- Department of Biology, Vassar College, Poughkeepsie, NY 12604, USA; (M.W.V.)
- Department of Biological Sciences, Charles E. Schmidt College of Science, Florida Atlantic University, Boca Raton, FL 33431, USA
| |
Collapse
|
3
|
Hopfe C, Ospina-Jara B, Schulze T, Tischer M, Morales D, Reinhartz V, Esfahani RE, Valderrama C, Pérez-Rigueiro J, Bleidorn C, Feldhaar H, Cabra-García J, Scheibel T. Impact of environmental factors on spider silk properties. Curr Biol 2024; 34:56-67.e5. [PMID: 38118450 DOI: 10.1016/j.cub.2023.11.043] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Revised: 10/11/2023] [Accepted: 11/20/2023] [Indexed: 12/22/2023]
Abstract
Spider orb webs have evolved to stop flying prey, fast and slow alike. One of the main web elements dissipating impact energy is the radial fibers, or major ampullate silks, which possess a toughness surpassing most man-made materials. Orb webs are extended phenotypes, and as such their architectural elements, including major ampullate silks, have been selected to optimize prey capture under the respective environmental conditions. In this study, we investigated the correlation of three landscape scales and three microhabitat characteristics with intrinsic silk properties (elastic modulus, yield stress, tensile strength, extensibility, and toughness) to understand underlying ecological patterns. For this purpose, we collected and mechanically tested major ampullate silks from 50 spider species inhabiting large altitudinal and climatic gradients in Colombia. Using regression analysis and model selection, we investigated the environmental drivers of inter- and intra-specific patterns of major ampullate silk properties, taking into account phylogenetic relatedness based on newly sequenced mitochondrial genomes. We found that the total amount of energy absorbed, i.e., toughness and tensile strength, is higher for fibers from species inhabiting regions where heavy rainfall is common. Interestingly, we observe the same general trend between individuals of the same species, stressing the importance of this environmental driver. We also observe a phylogenetic conservation in the relation of environmental variables with silk tensile strength and yield stress. In conclusion, the increase in major ampullate silk tensile strength and toughness may reflect an adaptation to prevent frequent rain damage to orb webs and the associated energetic loss.
Collapse
Affiliation(s)
- Charlotte Hopfe
- Department of Biomaterials, Universität Bayreuth, Prof.-Rüdiger-Bormann-Str. 1, Bayreuth 95447, Germany.
| | - Bryan Ospina-Jara
- Department of Biology, Universidad del Valle, Cl. 13 #100-00, Cali 760042, Colombia
| | - Thilo Schulze
- Department of Animal Evolution and Biodiversity, Georg-August-Universität Göttingen, Untere Karspüle 2, Göttingen 37073, Germany
| | - Marta Tischer
- Department of Animal Evolution and Biodiversity, Georg-August-Universität Göttingen, Untere Karspüle 2, Göttingen 37073, Germany
| | - Diego Morales
- Department of Biology, Universidad del Valle, Cl. 13 #100-00, Cali 760042, Colombia
| | - Vivien Reinhartz
- Department of Biomaterials, Universität Bayreuth, Prof.-Rüdiger-Bormann-Str. 1, Bayreuth 95447, Germany
| | - Rashin Eshghi Esfahani
- Department of Biomaterials, Universität Bayreuth, Prof.-Rüdiger-Bormann-Str. 1, Bayreuth 95447, Germany
| | - Carlos Valderrama
- Facultad de Ciencias, Universidad del Rosario, Cl. 12c #6-25, Bogotá 111711, Colombia
| | - José Pérez-Rigueiro
- Center for Biomedical Technology, Universidad Politécnica de Madrid, Crta. M40, Madrid 28223, Spain; Departamento de Ciencia de Materiales, ETSI Caminos, Canales y Puertos, Universidad Politécnica de Madrid, C/Prof. Aranguren 3, Madrid 28040, Spain; Biomedical Research Networking Center in Bioengineering Biomaterials and Nanomedicine (CIBER-BBN), Madrid 28029, Spain; Biomaterials and Regenerative Medicine Group, Instituto de Investigación Sanitaria del Hospital Clínico San Carlos (IdISSC), C/ Prof. Martín Lagos s/n, Madrid 28040, Spain
| | - Christoph Bleidorn
- Department of Animal Evolution and Biodiversity, Georg-August-Universität Göttingen, Untere Karspüle 2, Göttingen 37073, Germany
| | - Heike Feldhaar
- Department of Animal Ecology I, Bayreuth Center of Ecology and Environmental Research (BayCEER), Universität Bayreuth, Universitätsstraße 30, Bayreuth 95440, Germany
| | - Jimmy Cabra-García
- Department of Biology, Universidad del Valle, Cl. 13 #100-00, Cali 760042, Colombia
| | - Thomas Scheibel
- Department of Biomaterials, Universität Bayreuth, Prof.-Rüdiger-Bormann-Str. 1, Bayreuth 95447, Germany; Bayreuther Zentrum für Kolloide und Grenzflächen, Universität Bayreuth, Universitätsstraße 30, Bayreuth 95440, Germany; Bayreuther Materialzentrum, Universität Bayreuth, Universitätsstraße 30, Bayreuth 95440, Germany; Bayreuther Zentrum für Molekulare Biowissenschaften, Universität Bayreuth, Universitätsstraße 30, Bayreuth 95440, Germany; Bayrisches Polymerinstitut, Universität Bayreuth, Universitätsstraße 30, Bayreuth 95440, Germany.
| |
Collapse
|
4
|
Kulkarni S, Wood HM, Hormiga G. Advances in the reconstruction of the spider tree of life: A roadmap for spider systematics and comparative studies. Cladistics 2023; 39:479-532. [PMID: 37787157 DOI: 10.1111/cla.12557] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2022] [Revised: 07/27/2023] [Accepted: 08/17/2023] [Indexed: 10/04/2023] Open
Abstract
In the last decade and a half, advances in genetic sequencing technologies have revolutionized systematics, transforming the field from studying morphological characters or a few genetic markers, to genomic datasets in the phylogenomic era. A plethora of molecular phylogenetic studies on many taxonomic groups have come about, converging on, or refuting prevailing morphology or legacy-marker-based hypotheses about evolutionary affinities. Spider systematics has been no exception to this transformation and the inter-relationships of several groups have now been studied using genomic data. About 51 500 extant spider species have been described, all with a conservative body plan, but innumerable morphological and behavioural peculiarities. Inferring the spider tree of life using morphological data has been a challenging task. Molecular data have corroborated many hypotheses of higher-level relationships, but also resulted in new groups that refute previous hypotheses. In this review, we discuss recent advances in the reconstruction of the spider tree of life and highlight areas where additional effort is needed with potential solutions. We base this review on the most comprehensive spider phylogeny to date, representing 131 of the 132 spider families. To achieve this sampling, we combined six Sanger-based markers with newly generated and publicly available genome-scale datasets. We find that some inferred relationships between major lineages of spiders (such as Austrochiloidea, Palpimanoidea and Synspermiata) are robust across different classes of data. However, several new hypotheses have emerged with different classes of molecular data. We identify and discuss the robust and controversial hypotheses and compile this blueprint to design future studies targeting systematic revisions of these problematic groups. We offer an evolutionary framework to explore comparative questions such as evolution of venoms, silk, webs, morphological traits and reproductive strategies.
Collapse
Affiliation(s)
- Siddharth Kulkarni
- Department of Biological Sciences, The George Washington University, 2029 G St. NW, Washington, DC, 20052, USA
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, 1000 Constitution Avenue NW, Washington, DC, 20560, USA
| | - Hannah M Wood
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, 1000 Constitution Avenue NW, Washington, DC, 20560, USA
| | - Gustavo Hormiga
- Department of Biological Sciences, The George Washington University, 2029 G St. NW, Washington, DC, 20052, USA
| |
Collapse
|
5
|
Kuntner M, Čandek K, Gregorič M, Turk E, Hamilton CA, Chamberland L, Starrett J, Cheng RC, Coddington JA, Agnarsson I, Bond JE. Increasing Information Content and Diagnosability in Family-Level Classifications. Syst Biol 2023; 72:964-971. [PMID: 37161751 PMCID: PMC10405354 DOI: 10.1093/sysbio/syad021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Revised: 03/03/2023] [Accepted: 04/13/2023] [Indexed: 05/11/2023] Open
Abstract
Higher-level classifications often must account for monotypic taxa representing depauperate evolutionary lineages and lacking synapomorphies of their better-known, well-defined sister clades. In a ranked (Linnean) or unranked (phylogenetic) classification system, discovering such a depauperate taxon does not necessarily invalidate the rank classification of sister clades. Named higher taxa must be monophyletic to be phylogenetically valid. Ranked taxa above the species level should also maximize information content, diagnosability, and utility (e.g., in biodiversity conservation). In spider classification, families are the highest rank that is systematically catalogued, and incertae sedis is not allowed. Consequently, it is important that family-level taxa be well defined and informative. We revisit the classification problem of Orbipurae, an unranked suprafamilial clade containing the spider families Nephilidae, Phonognathidae, and Araneidae sensu stricto. We argue that, to maximize diagnosability, information content, conservation utility, and practical taxonomic considerations, this "splitting" scheme is superior to its recently proposed alternative, which lumps these families together as Araneidae sensu lato. We propose to redefine Araneidae and recognize a monogeneric spider family, Paraplectanoididae fam. nov. to accommodate the depauperate lineage Paraplectanoides. We present new subgenomic data to stabilize Orbipurae topology which also supports our proposed family-level classification. Our example from spiders demonstrates why classifications must be able to accommodate depauperate evolutionary lineages, for example, Paraplectanoides. Finally, although clade age should not be a criterion to determine rank, other things being equal, comparable ages of similarly ranked taxa do benefit comparative biology. [Classification, family rank, phylogenomics, systematics, monophyly, spider phylogeny.].
Collapse
Affiliation(s)
- Matjaž Kuntner
- Department of Organisms and Ecosystems Research, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia
- Jovan Hadži Institute of Biology, Research Centre of the Slovenian Academy of Sciences and Arts, Novi trg 2, SI-1001, Ljubljana, Slovenia
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, 10th and Constitution, NW, Washington, DC 20560-0105, USA
- University of Ljubljana, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia
- State Key Laboratory of Biocatalysis and Enzyme Engineering and Centre for Behavioural Ecology and Evolution, School of Life Sciences, Hubei University, Wuhan 430062 Hubei, China
| | - Klemen Čandek
- Department of Organisms and Ecosystems Research, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia
- University of Ljubljana, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia
| | - Matjaž Gregorič
- Jovan Hadži Institute of Biology, Research Centre of the Slovenian Academy of Sciences and Arts, Novi trg 2, SI-1001, Ljubljana, Slovenia
| | - Eva Turk
- University of Ljubljana, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia
- Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia
| | - Chris A Hamilton
- Department of Entomology, Plant Pathology and Nematology, University of Idaho, 875 Perimeter Dr. MS 2329, Moscow, ID 83844-2329, USA
| | - Lisa Chamberland
- Department of Entomology and Nematology, University of California Davis, 1 Shields Ave., Davis, CA 95616, USA
| | - James Starrett
- Department of Entomology and Nematology, University of California Davis, 1 Shields Ave., Davis, CA 95616, USA
| | - Ren-Chung Cheng
- Department of Life Sciences, National Chung Hsing University, No.145 Xingda Rd., South Dist., Taichung City 402, Taiwan
| | - Jonathan A Coddington
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, 10th and Constitution, NW, Washington, DC 20560-0105, USA
| | - Ingi Agnarsson
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, 10th and Constitution, NW, Washington, DC 20560-0105, USA
- State Key Laboratory of Biocatalysis and Enzyme Engineering and Centre for Behavioural Ecology and Evolution, School of Life Sciences, Hubei University, Wuhan 430062 Hubei, China
- Faculty of Life- and Environmental Sciences, University of Iceland, Sturlugata 7, 102 Reykjavik, Iceland
| | - Jason E Bond
- Department of Entomology and Nematology, University of California Davis, 1 Shields Ave., Davis, CA 95616, USA
| |
Collapse
|
6
|
Caetano C, Griswold CE, Michalik P, Labarque FM. Evolution and comparative morphology of raptorial feet in spiders. ARTHROPOD STRUCTURE & DEVELOPMENT 2023; 74:101255. [PMID: 37011488 DOI: 10.1016/j.asd.2023.101255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Revised: 03/13/2023] [Accepted: 03/13/2023] [Indexed: 06/02/2023]
Abstract
Spiders are among the most diverse animals, which developed different morphological and behavioral traits for capturing prey. We studied the anatomy and functionality of the rare and apomorphic raptorial spider feet using 3D reconstruction modeling, among other imaging techniques. The evolutionary reconstruction of the raptorial feet (tarsus plus pretarsus) features using a composite tree of spiders, indicating that similar traits emerged three times independently in Trogloraptoridae, Gradungulinae, and Doryonychus raptor (Tetragnathidae). The characteristics defining the raptorial feet are an interlocked complex merging of the base of the elongated prolateral claw with the pretarsal sclerotized ring, with the former clasping against the tarsus. Raptorial feet even flex over robust raptorial macrosetae forming a reduced tarsal version of a catching basket to encase prey during hunting. Our results show that Celaeniini (Araneidae) and Heterogriffus berlandi (Thomisidae), taxa previously compared with raptorial spiders, lack the raptorial feet key characteristics and the tarsal-catching basket. We make predictions about the possible behavior of the abovementioned taxa that will need to be tested by observing living specimens. We conclude that multiple morphological tarsal and pretarsal micro-structures define the raptorial foot functional unit and recommend a comprehensive evaluation before assigning this configuration to any spider taxa.
Collapse
Affiliation(s)
- Carolina Caetano
- Departamento de Ecologia e Biologia Evolutiva (DEBE), Universidade Federal de São Carlos (UFSCar), campus São Carlos, Rodovia Washington Luís, Km 235, CEP, 13565-905, São Carlos, SP, Brazil; Departamento de Hidrobiologia (DHb), Universidade Federal de São Carlos (UFSCar), campus São Carlos, Rodovia Washington Luís, Km 235, CEP, 13565-905, São Carlos, SP, Brazil.
| | - Charles E Griswold
- California Academy of Sciences, 55 Music Concourse Drive, San Francisco, CA, 94118, USA.
| | - Peter Michalik
- Zoologisches Institut und Museum, Universität Greifswald, Greifswald, Germany.
| | - Facundo M Labarque
- Departamento de Ecologia e Biologia Evolutiva (DEBE), Universidade Federal de São Carlos (UFSCar), campus São Carlos, Rodovia Washington Luís, Km 235, CEP, 13565-905, São Carlos, SP, Brazil.
| |
Collapse
|
7
|
Castanheira PDS, Framenau VW. Abba, a new monotypic genus of orb-weaving spiders (Araneae, Araneidae) from Australia. EVOLUTIONARY SYSTEMATICS 2023. [DOI: 10.3897/evolsyst.7.98015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
A new monotypic genus in the orb-weaving spider family Araneidae Clerck, 1757 is described from Australia: Abbagen. nov., with Abba transversa (Rainbow, 1912) comb. nov. as the type species. It differs from all other genera in the family by somatic characters, specifically a patch of approximately five long spines on the prolateral surface of the first leg in males and an abdominal colouration with a pair of two central spots dorsally on a creamy-white surface. Specimens of A. transversacomb. nov. have been collected in Queensland and New South Wales, where the species is largely summer-mature. We also provide a genus level summary of all Australian Araneidae, currently consisting of 230 described species and eight subspecies in 46 genera.
Collapse
|
8
|
Wu Y, Wang C, Wu N, Zhang M, Mi X. On four new species of the orb-weaver spider genus Araneus Clerck, 1757 (Araneae, Araneidae) from southern China. Zookeys 2023; 1160:169-190. [PMID: 37206886 PMCID: PMC10189537 DOI: 10.3897/zookeys.1160.101594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Accepted: 04/19/2023] [Indexed: 05/21/2023] Open
Abstract
Four new species of Araneus Clerck, 1757 from southern China are described: A.mayanghe Mi & Wang, sp. nov. (♂♀) from Guizhou, A.shiwandashan Mi & Wang, sp. nov. (♂♀) from Guangxi, and A.zhoui Mi & Wang, sp. nov. (♂♀) from Hainan are assigned to the A.sturmi group, and A.fenzhi Mi & Wang, sp. nov. (♂♀) from Hunan, Guizhou and Jiangxi is not assigned to any species group. A new combination is also proposed: Aoaraneusoctumaculalus (Han & Zhu, 2010) comb. nov.
Collapse
Affiliation(s)
- Yibei Wu
- College of Agriculture and Forestry Engineering and Planning, Guizhou Provincial Key Laboratory of Biodiversity Conservation and Utilization in the Fanjing Mountain Region, Tongren University, Tongren 554300, Guizhou, ChinaTongren UniversityTongrenChina
| | - Cheng Wang
- College of Agriculture and Forestry Engineering and Planning, Guizhou Provincial Key Laboratory of Biodiversity Conservation and Utilization in the Fanjing Mountain Region, Tongren University, Tongren 554300, Guizhou, ChinaTongren UniversityTongrenChina
| | - Nanfei Wu
- Central South Inventory and Planning Institute of National Forestry and Grassland Administration, Changsha, Hunan 410014, ChinaCentral South Inventory and Planning Institute of National Forestry and Grassland AdministrationChangshaChina
| | - Mengfei Zhang
- Central South Inventory and Planning Institute of National Forestry and Grassland Administration, Changsha, Hunan 410014, ChinaCentral South Inventory and Planning Institute of National Forestry and Grassland AdministrationChangshaChina
| | - Xiaoqi Mi
- College of Agriculture and Forestry Engineering and Planning, Guizhou Provincial Key Laboratory of Biodiversity Conservation and Utilization in the Fanjing Mountain Region, Tongren University, Tongren 554300, Guizhou, ChinaTongren UniversityTongrenChina
| |
Collapse
|
9
|
Mi X, Li S. On eleven new species of the orb-weaver spider genus Araneus Clerck, 1757 (Araneae, Araneidae) from Xishuangbanna, Yunnan, China. Zookeys 2022; 1137:75-108. [PMID: 36760478 PMCID: PMC9836476 DOI: 10.3897/zookeys.1137.96306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Accepted: 11/29/2022] [Indexed: 12/24/2022] Open
Abstract
Eleven new species of Araneus Clerck, 1757 from Xishuangbanna, Yunnan, China are described: Araneusarcuatus sp. nov. (♂♀), A.bidentatus sp. nov. (♂♀), A.bidentatoides sp. nov. (♂♀), A.complanatus sp. nov. (♂♀), A.corrugis sp. nov. (♀), A.cucullatus sp. nov. (♀), A.minisculus sp. nov. (♂), A.ovoideus sp. nov. (♀), A.pseudodigitatus sp. nov. (♂♀), A.semiorbiculatus sp. nov. (♀), and A.tetracanthus sp. nov. (♂♀). Diagnostic photographs of the habitus and copulatory organs are provided.
Collapse
Affiliation(s)
- Xiaoqi Mi
- College of Agriculture and Forestry Engineering and Planning, Guizhou Provincial Key Laboratory of Biodiversity Conservation and Utilization in the Fanjing Mountain Region, Tongren University, Tongren 554300, Guizhou, ChinaTongren UniversityTongrenChina
| | - Shuqiang Li
- Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, ChinaInstitute of Zoology, Chinese Academy of sciencesBeijingChina
| |
Collapse
|
10
|
Chamberland L, Agnarsson I, Quayle IL, Ruddy T, Starrett J, Bond JE. Biogeography and eye size evolution of the ogre-faced spiders. Sci Rep 2022; 12:17769. [PMID: 36273015 PMCID: PMC9588044 DOI: 10.1038/s41598-022-22157-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Accepted: 10/10/2022] [Indexed: 01/19/2023] Open
Abstract
Net-casting spiders (Deinopidae) comprise a charismatic family with an enigmatic evolutionary history. There are 67 described species of deinopids, placed among three genera, Deinopis, Menneus, and Asianopis, that are distributed globally throughout the tropics and subtropics. Deinopis and Asianopis, the ogre-faced spiders, are best known for their giant light-capturing posterior median eyes (PME), whereas Menneus does not have enlarged PMEs. Molecular phylogenetic studies have revealed discordance between morphology and molecular data. We employed a character-rich ultra-conserved element (UCE) dataset and a taxon-rich cytochrome-oxidase I (COI) dataset to reconstruct a genus-level phylogeny of Deinopidae, aiming to investigate the group's historical biogeography, and examine PME size evolution. Although the phylogenetic results support the monophyly of Menneus and the single reduction of PME size in deinopids, these data also show that Deinopis is not monophyletic. Consequently, we formally transfer 24 Deinopis species to Asianopis; the transfers comprise all of the African, Australian, South Pacific, and a subset of Central American and Mexican species. Following the divergence of Eastern and Western deinopids in the Cretaceous, Deinopis/Asianopis dispersed from Africa, through Asia and into Australia with its biogeographic history reflecting separation of Western Gondwana as well as long-distance dispersal events.
Collapse
Affiliation(s)
- Lisa Chamberland
- grid.27860.3b0000 0004 1936 9684Department of Entomology and Nematology, University of California Davis, Davis, CA 95616 USA
| | - Ingi Agnarsson
- grid.14013.370000 0004 0640 0021Faculty of Life and Environmental Sciences, University of Iceland, Sturlugata 7, 102 Reykjavik, Iceland
| | - Iris L. Quayle
- grid.27860.3b0000 0004 1936 9684Department of Entomology and Nematology, University of California Davis, Davis, CA 95616 USA
| | - Tess Ruddy
- grid.267778.b0000 0001 2290 5183Vassar College, Poughkeepsie, NY 12604 USA
| | - James Starrett
- grid.27860.3b0000 0004 1936 9684Department of Entomology and Nematology, University of California Davis, Davis, CA 95616 USA
| | - Jason E. Bond
- grid.27860.3b0000 0004 1936 9684Department of Entomology and Nematology, University of California Davis, Davis, CA 95616 USA
| |
Collapse
|
11
|
Arakawa K, Kono N, Malay AD, Tateishi A, Ifuku N, Masunaga H, Sato R, Tsuchiya K, Ohtoshi R, Pedrazzoli D, Shinohara A, Ito Y, Nakamura H, Tanikawa A, Suzuki Y, Ichikawa T, Fujita S, Fujiwara M, Tomita M, Blamires SJ, Chuah JA, Craig H, Foong CP, Greco G, Guan J, Holland C, Kaplan DL, Sudesh K, Mandal BB, Norma-Rashid Y, Oktaviani NA, Preda RC, Pugno NM, Rajkhowa R, Wang X, Yazawa K, Zheng Z, Numata K. 1000 spider silkomes: Linking sequences to silk physical properties. SCIENCE ADVANCES 2022; 8:eabo6043. [PMID: 36223455 PMCID: PMC9555773 DOI: 10.1126/sciadv.abo6043] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Accepted: 08/19/2022] [Indexed: 06/16/2023]
Abstract
Spider silks are among the toughest known materials and thus provide models for renewable, biodegradable, and sustainable biopolymers. However, the entirety of their diversity still remains elusive, and silks that exceed the performance limits of industrial fibers are constantly being found. We obtained transcriptome assemblies from 1098 species of spiders to comprehensively catalog silk gene sequences and measured the mechanical, thermal, structural, and hydration properties of the dragline silks of 446 species. The combination of these silk protein genotype-phenotype data revealed essential contributions of multicomponent structures with major ampullate spidroin 1 to 3 paralogs in high-performance dragline silks and numerous amino acid motifs contributing to each of the measured properties. We hope that our global sampling, comprehensive testing, integrated analysis, and open data will provide a solid starting point for future biomaterial designs.
Collapse
Affiliation(s)
- Kazuharu Arakawa
- Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0017, Japan
- Faculty of Environment and Information Studies, Keio University, Fujisawa, Kanagawa 252-8520, Japan
- Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa 252-8520, Japan
- Exploratory Research Center on Life and Living Systems (ExCELLS), National Institutes of Natural Sciences, Okazaki, Aichi 444-8787, Japan
| | - Nobuaki Kono
- Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0017, Japan
- Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa 252-8520, Japan
| | - Ali D. Malay
- Biomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
| | - Ayaka Tateishi
- Biomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
- Department of Material Chemistry, Kyoto University, Nishikyo, Kyoto 615-8510, Japan
| | - Nao Ifuku
- Biomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
| | - Hiroyasu Masunaga
- Japan Synchrotron Radiation Research Institute, Sayo-gun, Hyogo 679-5198, Japan
| | - Ryota Sato
- Biomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
- Spiber Inc., Tsuruoka, Yamagata 997-0052, Japan
| | - Kousuke Tsuchiya
- Biomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
- Department of Material Chemistry, Kyoto University, Nishikyo, Kyoto 615-8510, Japan
| | - Rintaro Ohtoshi
- Biomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
- Spiber Inc., Tsuruoka, Yamagata 997-0052, Japan
| | | | | | - Yusuke Ito
- Spiber Inc., Tsuruoka, Yamagata 997-0052, Japan
| | - Hiroyuki Nakamura
- Biomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
- Spiber Inc., Tsuruoka, Yamagata 997-0052, Japan
| | - Akio Tanikawa
- Graduate School of Agricultural and Life Sciences, University of Tokyo, Yayoi, Bunkyo, Tokyo 113-8657, Japan
| | - Yuya Suzuki
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tennodai, Tsukuba, Ibaraki 305-8572, Japan
- The United Graduate School of Agricultural Sciences, Kagoshima University, Korimoto, Kagoshima 890-0065, Japan
| | - Takeaki Ichikawa
- Kokugakuin Kugayama High School, Suginami, Tokyo 168-0082, Japan
| | - Shohei Fujita
- Graduate School of Agriculture, Saga University, Saga 840-8502, Japan
| | - Masayuki Fujiwara
- Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0017, Japan
| | - Masaru Tomita
- Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0017, Japan
- Faculty of Environment and Information Studies, Keio University, Fujisawa, Kanagawa 252-8520, Japan
- Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa 252-8520, Japan
| | - Sean J. Blamires
- Evolution and Ecology Research Centre, University of New South Wales, Sydney, NSW 2052, Australia
| | - Jo-Ann Chuah
- Biomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
| | - Hamish Craig
- Biomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
- Evolution and Ecology Research Centre, University of New South Wales, Sydney, NSW 2052, Australia
| | - Choon P. Foong
- Biomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
- Department of Material Chemistry, Kyoto University, Nishikyo, Kyoto 615-8510, Japan
| | - Gabriele Greco
- Department of Civil, Environmental and Mechanical Engineering, University of Trento, Via Mesiano 77, I-38123 Trento, Italy
| | - Juan Guan
- Beijing Advanced Innovation Center for Biomedical Engineering, School of Materials Science and Engineering, Beihang University, Beijing 100191, China
| | - Chris Holland
- Natural Materials Group, Department of Materials Science and Engineering, The University of Sheffield, Mappin Street, Sheffield S1 3JD, UK
| | - David L. Kaplan
- Department of Biomedical Engineering, Tufts University, Medford, MA 02155, USA
| | - Kumar Sudesh
- School of Biological Sciences, Universiti Sains Malaysia, 11800 Penang, Malaysia
| | - Biman B. Mandal
- Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati (IITG), Guwahati, 781 039 Assam, India
- Center for Nanotechnology, IITG, Guwahati, 781 039 Assam, India
- School of Health Sciences and Technology, IITG, Guwahati, 781 039 Assam, India
| | - Y. Norma-Rashid
- Institute of Biological Sciences, Faculty of Science, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Nur A. Oktaviani
- Biomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
| | - Rucsanda C. Preda
- Department of Biomedical Engineering, Tufts University, Medford, MA 02155, USA
| | - Nicola M. Pugno
- Department of Civil, Environmental and Mechanical Engineering, University of Trento, Via Mesiano 77, I-38123 Trento, Italy
- School of Engineering and Materials Science, Queen Mary University of London, Mile End Road, E1 4NS London, UK
| | - Rangam Rajkhowa
- Institute for Frontier Materials, Deakin University, Waurn Ponds, VIC 3216, Australia
| | - Xiaoqin Wang
- College of Textile and Clothing Engineering, Soochow University, Suzhou 215123, China
| | - Kenjiro Yazawa
- Biomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
| | - Zhaozhu Zheng
- College of Textile and Clothing Engineering, Soochow University, Suzhou 215123, China
| | - Keiji Numata
- Biomacromolecules Research Team, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
- Department of Material Chemistry, Kyoto University, Nishikyo, Kyoto 615-8510, Japan
| |
Collapse
|
12
|
Framenau VW, Kuntner M. The new Australian leaf-curling orb-weaving spider genus Leviana (Araneae, Araneidae). EVOLUTIONARY SYSTEMATICS 2022. [DOI: 10.3897/evolsyst.6.83573] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The new Australian orb-weaving spider genus Levianagen. nov. is described to include five species, all known from both sexes: Leviana dimidiata (L. Koch, 1871) comb. nov. (type species) (= Epeira sylvicola Rainbow, 1897 syn. nov.), L. cincinnatasp. nov., L. foliumsp. nov., L. minimasp. nov. and L. mulieraria (Keyserling, 1887) comb. nov. Male pedipalp morphology, specifically the presence of a single patella spine and the median apophysis forming an arch over the radix, place Levianagen. nov. in the informal Australian ‘backobourkiine’ clade; however, the genus differs from all other genera of this group by the presence of a spine inside the basal median apophysis arch of the male pedipalp, an epigyne that is wider than long with a scape that is approximately as long as the epigyne (but often broken off) and a lack of humeral humps on the elongate ovoid abdomen. In addition, unlike any other backobourkiine, Levianagen. nov. incorporate a rolled leaf as retreat into the periphery of their web. Levianagen. nov. species exhibit only a moderate sexual size dimorphism with female to male ratios between 1.3 and 1.7. Levianagen. nov. occurs in eastern Australia from northern Queensland in the north to Victoria in the south, with a single tropical species, L. mulierariacomb. nov., spreading into northern Western Australia.
Collapse
|
13
|
Babb PL, Gregorič M, Lahens NF, Nicholson DN, Hayashi CY, Higgins L, Kuntner M, Agnarsson I, Voight BF. Characterization of the genome and silk-gland transcriptomes of Darwin's bark spider (Caerostris darwini). PLoS One 2022; 17:e0268660. [PMID: 35666730 PMCID: PMC9170102 DOI: 10.1371/journal.pone.0268660] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 05/04/2022] [Indexed: 11/19/2022] Open
Abstract
Natural silks crafted by spiders comprise some of the most versatile materials known. Artificial silks-based on the sequences of their natural brethren-replicate some desirable biophysical properties and are increasingly utilized in commercial and medical applications today. To characterize the repertoire of protein sequences giving silks their biophysical properties and to determine the set of expressed genes across each unique silk gland contributing to the formation of natural silks, we report here draft genomic and transcriptomic assemblies of Darwin's bark spider, Caerostris darwini, an orb-weaving spider whose dragline is one of the toughest known biomaterials on Earth. We identify at least 31 putative spidroin genes, with expansion of multiple spidroin gene classes relative to the golden orb-weaver, Trichonephila clavipes. We observed substantial sharing of spidroin repetitive sequence motifs between species as well as new motifs unique to C. darwini. Comparative gene expression analyses across six silk gland isolates in females plus a composite isolate of all silk glands in males demonstrated gland and sex-specific expression of spidroins, facilitating putative assignment of novel spidroin genes to classes. Broad expression of spidroins across silk gland types suggests that silks emanating from a given gland represent composite materials to a greater extent than previously appreciated. We hypothesize that the extraordinary toughness of C. darwini major ampullate dragline silk may relate to the unique protein composition of major ampullate spidroins, combined with the relatively high expression of stretchy flagelliform spidroins whose union into a single fiber may be aided by novel motifs and cassettes that act as molecule-binding helices. Our assemblies extend the catalog of sequences and sets of expressed genes that confer the unique biophysical properties observed in natural silks.
Collapse
Affiliation(s)
- Paul L. Babb
- Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States of America
- Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States of America
| | - Matjaž Gregorič
- Jovan Hadži Institute of Biology, Research Centre of the Slovenian Academy of Sciences and Arts, Ljubljana, Slovenia
| | - Nicholas F. Lahens
- Institute for Translational Medicine and Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States of America
| | - David N. Nicholson
- Genomics and Computational Biology Graduate Group, University of Pennsylvania, Philadelphia, PA, United States of America
| | - Cheryl Y. Hayashi
- Division of Invertebrate Zoology and Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, NY, United States of America
| | - Linden Higgins
- Department of Biology, University of Vermont, Burlington, VT, United States of America
| | - Matjaž Kuntner
- Jovan Hadži Institute of Biology, Research Centre of the Slovenian Academy of Sciences and Arts, Ljubljana, Slovenia
- Department of Organisms and Ecosystems Research, National Institute of Biology, Ljubljana, Slovenia
| | - Ingi Agnarsson
- Department of Biology, University of Vermont, Burlington, VT, United States of America
- Faculty of Life and Environmental Sciences, University of Iceland, Reykjavik, Iceland
| | - Benjamin F. Voight
- Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States of America
- Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States of America
- Institute for Translational Medicine and Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States of America
| |
Collapse
|
14
|
Kelly SD, Opell BD, Correa-Garwhal SM. Correlated evolution between orb weaver glue droplets and supporting fibres maintains their distinct biomechanical roles in adhesion. J Evol Biol 2022; 35:879-890. [PMID: 35694995 PMCID: PMC9327512 DOI: 10.1111/jeb.14025] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Revised: 03/31/2022] [Accepted: 05/04/2022] [Indexed: 12/01/2022]
Abstract
Orb weaving spiders employ a 'silken toolkit' to accomplish a range of tasks, including retaining prey that strike their webs. This is accomplished by a viscous capture spiral thread that features tiny glue droplets, supported by a pair of elastic flagelliform fibres. Each droplet contains a glycoprotein core responsible for adhesion. However, prey retention relies on the integrated performance of multiple glue droplets and their supporting fibres, with previous studies demonstrating that a suspension bridge forms, whose biomechanics sum the adhesive forces of multiple droplets while dissipating the energy of the struggling insect. While the interdependence of the droplet's glycoprotein and flagelliform fibres for functional adhesion is acknowledged, there has been no direct test of this hypothesized linkage between the material properties of each component. Spider mass, which differs greatly across orb weaving species, also has the potential to affect flagelliform fibre and glycoprotein material properties. Previous studies have linked spider mass to capture thread performance but have not examined the relationship between spider mass and thread material properties. We extend earlier studies to examine these relationships in 16 orb weaving species using phylogenetic generalized least squares. This analysis revealed that glycoprotein stiffness (elastic modulus) was correlated with flagelliform fibre stiffness, and that spider mass was related to the glycoprotein volume, flagelliform fibre cross-sectional area and droplets per unit thread length. By shaping the elastic moduli of glycoprotein adhesive and flagelliform fibres, natural selection has maintained the biomechanical integration of this adhesive system.
Collapse
Affiliation(s)
- Sean D Kelly
- Department of Biology, San Diego State University, San Diego, California, USA.,Evolution, Ecology, and Organismal Biology Department, University of California Riverside, Riverside, California, USA
| | - Brent D Opell
- Department of Biological Sciences, Virginia Tech, Blacksburg, Virginia, USA
| | | |
Collapse
|
15
|
Framenau VW, de S. Castanheira P. Revision of the new Australasian orb-weaving spider genus Salsa (Araneae, Araneidae). Zookeys 2022; 1102:107-148. [PMID: 36761153 PMCID: PMC9848856 DOI: 10.3897/zookeys.1102.82388] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2022] [Accepted: 04/22/2022] [Indexed: 11/12/2022] Open
Abstract
A new Australasian genus in the orb-weaving spider family Araneidae Clerck, 1757 is described to include seven species: Salsafuliginata (L. Koch, 1871) comb. nov. (type species; = Epeirarubicundula Keyserling, 1887) syn. nov.) (Australia, introduced to New Zealand); S.brisbanae (L. Koch, 1867) comb. nov. (Australia); S.canalae (Berland, 1924) comb. nov. (New Caledonia); S.neneba sp. nov. (Papua New Guinea); S.recherchensis (Main, 1954) comb. nov. (Australia); S.rueda sp. nov. (Australia); and S.tartara sp. nov. (Australia; Lord Howe Island endemic). Salsa gen. nov. belongs to the Australasian informal backobourkiine clade and differs from other genera of this clade by a distinct abdominal shape (single posterior abdominal tubercle) and ventral colouration (pale lateral spindle-shaped bands), male pedipalp morphology (C-shaped median apophysis that has teeth-like tubercles inside the basal arch) and the shape of the female epigyne scape (partially translucent and generally shorter than the epigyne plate). Based mainly on male pedipalp morphology within the backobourkiines, Salsa gen. nov. has closest morphological affinities with Acroaspis Karsch, 1878 and Socca Framenau, Castanheira & Vink, 2022.
Collapse
Affiliation(s)
- Volker W. Framenau
- Harry Butler Institute, Murdoch University, 90 South St, Murdoch, Western Australia 6150, AustraliaMurdoch UniversityMurdochAustralia,Department of Terrestrial Zoology, Western Australian Museum, Locked Bag 49, Welshpool DC, Western Australia, 6986, AustraliaWestern Australian MuseumWelshpoolAustralia,Zoological Museum Hamburg, Leibnitz Institute for the Analysis of Biodiversity Change (LIB), Centre for Taxonomy & Morphology, Martin-Luther-King-Platz 3, 20146 Hamburg, GermanyZoological Museum HamburgHamburgGermany
| | - Pedro de S. Castanheira
- Harry Butler Institute, Murdoch University, 90 South St, Murdoch, Western Australia 6150, AustraliaMurdoch UniversityMurdochAustralia
| |
Collapse
|
16
|
Framenau VW, Castanheira PDS. A new genus of Australian orb-weaving spider with extreme sexual size dimorphism (Araneae, Araneidae). ZOOSYST EVOL 2022. [DOI: 10.3897/zse.98.82649] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The new Australian orb-weaving spider genus Mangrovia in the family Araneidae Clerck, 1757 is described. It is characterised by extreme sexual size-dimorphism (eSSD) with females (total length 8–10 mm) ca. 3 to 5 times larger than males (2.5–3 mm). Whilst Mangrovia shares with the informal Australian ‘backobourkiine’ clade a single seta on the male pedipalp patella, the genus is probably more closely related to the ‘zealaraneines’ or associated genera. In addition to eSSD and the single patellar spine, the genus is characterised by a distinct subterminal embolus branch in males. The new genus includes two species: the type species Mangrovia albida (L. Koch, 1871) comb. nov. (= Epeira fastidiosa Keyserling, 1887, new syn.) from Queensland and Mangrovia occidentalissp. nov. from Western Australia. Both species are apparently coastal and occur in mangroves, but also in riparian woodland. Spiders were found resting in rolled-up leaves adjacent to their orb-web.
Collapse
|
17
|
Bioinformation Systems with Detectors and Signal Coding Capabilities. SCIENCE AND INNOVATION 2022. [DOI: 10.15407/scine18.02.073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Introduction. The integration of computer technologies into various fields of science allows the development of new methodologies, hybrid information systems with advanced capabilities, such as EcoIS bioinformation system for monitoring the environment with the use of biological data detectors.Problem Statement. The development of innovation bioinformation systems with biological data detectors is a very important task, as they have numerous advantages: allow rapid diagnostics and testing of chemicals in thefirst moments of their action, may be incorporated easily into electronic registration systems, may serve as elementary analytical units with data coding capabilities, etc.Purpose. The purpose of this research is to make a comprehensive analysis of different types of biological data detectors to develop a physical model of a biosensor capable of encoding signals and a bioinformation system with such detectors.Materials and Methods. The comparative analysis of information systems with functions of ecomonitoring and different types of biosensors have been used; the data are taken from electrophysiological experiments on registration of chemosensitive transmembrane electric currents in voltage clamp and patch clamp modes.Results. The physical model of biosensor has been developed and tested. The integration of the developed biosensors into the electronic bioinformation system by the example of EcoIS authors’ system has been demonstrated. Neuron-like biosensor has been considered an abstraction in the unity of its functions: signal receiver — filter — analyzer — encoder/decoder, where the input information is obtained in the form of chemical structures or electrical signals, after the conversion (recoding) of information it is registered as electrical signals with changed characteristics. The prospects for developing the cutting-edge methods for information protection in systems with biosensors have been shown.
Conclusions. This development may be used for creating a bioinformation system for environmental moni toring with integrated biosensor system and data protection based on the principles and achievements of contemporary biophysics.
Collapse
|
18
|
Abstract
![]()
The tiny spider makes
dragline silk fibers with unbeatable toughness,
all under the most innocuous conditions. Scientists have persistently
tried to emulate its natural silk spinning process using recombinant
proteins with a view toward creating a new wave of smart materials,
yet most efforts have fallen short of attaining the native fiber’s
excellent mechanical properties. One reason for these shortcomings
may be that artificial spider silk systems tend to be overly simplified
and may not sufficiently take into account the true complexity of
the underlying protein sequences and of the multidimensional aspects
of the natural self-assembly process that give rise to the hierarchically
structured fibers. Here, we discuss recent findings regarding the
material constituents of spider dragline silk, including novel spidroin
subtypes, nonspidroin proteins, and possible involvement of post-translational
modifications, which together suggest a complexity that transcends
the two-component MaSp1/MaSp2 system. We subsequently consider insights
into the spidroin domain functions, structures, and overall mechanisms
for the rapid transition from disordered soluble protein into a highly
organized fiber, including the possibility of viewing spider silk
self-assembly through a framework relevant to biomolecular condensates.
Finally, we consider the concept of “biomimetics” as
it applies to artificial spider silk production with a focus on key
practical aspects of design and evaluation that may hopefully inform
efforts to more closely reproduce the remarkable structure and function
of the native silk fiber using artificial methods.
Collapse
Affiliation(s)
- Ali D Malay
- Biomacromolecules Research Team, Center for Sustainable Resource Science, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Hamish C Craig
- Biomacromolecules Research Team, Center for Sustainable Resource Science, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Jianming Chen
- Biomacromolecules Research Team, Center for Sustainable Resource Science, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Nur Alia Oktaviani
- Biomacromolecules Research Team, Center for Sustainable Resource Science, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Keiji Numata
- Biomacromolecules Research Team, Center for Sustainable Resource Science, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan.,Department of Material Chemistry, Kyoto University, Nishikyo-ku, Kyoto 615-8510, Japan
| |
Collapse
|
19
|
Miller TE, Taylor GK, Mortimer B. Slit sense organ distribution on the legs of two species of orb-weaving spider (Araneae: Araneidae). ARTHROPOD STRUCTURE & DEVELOPMENT 2022; 67:101140. [PMID: 35137691 DOI: 10.1016/j.asd.2022.101140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2021] [Revised: 01/04/2022] [Accepted: 01/07/2022] [Indexed: 06/14/2023]
Abstract
Biotic and abiotic mechanical stimuli are ubiquitous in the environment, and are a widely used source of sensory information in arthropods. Spiders sense mechanical stimuli using hundreds of slit sense organs (small isolated slits, large isolated slits, groups of slits and lyriform organs) distributed across their bodies and appendages. These slit sense organs are embedded in the exoskeleton and detect cuticular strain. Therefore, the spatial pattern of these sensors can give clues into how mechanical stimuli from different sources might be processed and filtered as they are transmitted through the body. Here, we map the distribution of slit sense organs on the legs in two species of orb-weaving spider, A. diadematus and T. edulis, in which slit sense organ distribution has not previously been investigated. We image the spiders' legs using scanning electron microscopy, and trace the position and orientation of slits on these images to describe the distribution and external morphology of the slit sense organs. We show that both species have a similar distribution of slit sense organs, with small isolated slits occurring in consistent lines parallel to the long axis of the legs, whilst large isolated slits, groups of slits and lyriform organs appear in fixed positions near the leg joints. Our findings support what has been described in the literature for several other species of spider, which indicates that slit organ arrangement is conserved across spiders in different evolutionary lineages and with disparate hunting strategies. The dispersed distribution of small isolated slits along the whole length of the leg may be used to detect large-scale strain of the leg segment as a result of muscle activity or internal changes in haemolymph pressure.
Collapse
Affiliation(s)
- Thomas E Miller
- Department of Zoology, Zoology Research and Administration Building, 11a Mansfield Road, Oxford, OX1 3SZ, UK
| | - Graham K Taylor
- Department of Zoology, Zoology Research and Administration Building, 11a Mansfield Road, Oxford, OX1 3SZ, UK
| | - Beth Mortimer
- Department of Zoology, Zoology Research and Administration Building, 11a Mansfield Road, Oxford, OX1 3SZ, UK.
| |
Collapse
|
20
|
Single-Island Endemism despite Repeated Dispersal in Caribbean Micrathena (Araneae: Araneidae): An Updated Phylogeographic Analysis. DIVERSITY 2022. [DOI: 10.3390/d14020128] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Island biogeographers have long sought to elucidate the mechanisms behind biodiversity genesis. The Caribbean presents a unique stage on which to analyze the diversification process, due to the geologic diversity among the islands and the rich biotic diversity with high levels of island endemism. The colonization of such islands may reflect geologic heterogeneity through vicariant processes and/ or involve long-distance overwater dispersal. Here, we explore the phylogeography of the Caribbean and proximal mainland spiny orbweavers (Micrathena, Araneae), an American spider lineage that is the most diverse in the tropics and is found throughout the Caribbean. We specifically test whether the vicariant colonization via the contested GAARlandia landbridge (putatively emergent 33–35 mya), long-distance dispersal (LDD), or both processes best explain the modern Micrathena distribution. We reconstruct the phylogeny and test biogeographic hypotheses using a ‘target gene approach’ with three molecular markers (CO1, ITS-2, and 16S rRNA). Phylogenetic analyses support the monophyly of the genus but reject the monophyly of Caribbean Micrathena. Biogeographical analyses support five independent colonizations of the region via multiple overwater dispersal events, primarily from North/Central America, although the genus is South American in origin. There is no evidence for dispersal to the Greater Antilles during the timespan of GAARlandia. Our phylogeny implies greater species richness in the Caribbean than previously known, with two putative species of M. forcipata that are each single-island endemics, as well as deep divergences between the Mexican and Floridian M. sagittata. Micrathena is an unusual lineage among arachnids, having colonized the Caribbean multiple times via overwater dispersal after the submergence of GAARlandia. On the other hand, single-island endemism and undiscovered diversity are nearly universal among all but the most dispersal-prone arachnid groups in the Caribbean.
Collapse
|
21
|
Yu KP, Kuntner M, Cheng RC. Phylogenetic evidence for an independent origin of extreme sexual size dimorphism in a genus of araneid spiders (Araneae: Araneidae). INVERTEBR SYST 2022. [DOI: 10.1071/is21019] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Cyphalonotus is a poorly studied Old World araneid spider genus of which the phylogenetic proximity remains unknown due to the paucity of morphological and molecular data. We test the phylogenetic placement and the taxonomic composition of Cyphalonotus and place the male and female size variation of Cyphalonotus and related genera in an evolutionary context. Our collection and field observations from Taiwan and China facilitate description of a new and a known species, and original sequence data enable species delimitation and phylogenetic analyses. The phylogenetic results reject all four classification hypotheses from the literature and instead recover a well-supported clade comprising Cyphalonotus + Poltys. We review the male and female size variation in Cyphalonotus, Poltys and related genera. These data reveal that all known species of Poltys are extremely sexually size dimorphic (eSSD = females over twice the size of males) reaching values exceeding 10-fold differences, whereas Cyphalonotus and other genera in phylogenetic proximity are relatively sexually monomorphic (SSD < 2.0). This confirms an independent origin of eSSD in Poltys, one of multiple convergent evolutionary outcomes in orbweb spiders.
Collapse
|
22
|
Framenau VW, de S. Castanheira P, Vink CJ. Taxonomy and systematics of the new Australo-Pacific orb-weaving spider genus Socca (Araneae: Araneidae). NEW ZEALAND JOURNAL OF ZOOLOGY 2022. [DOI: 10.1080/03014223.2021.2014899] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Volker W. Framenau
- Harry Butler Institute, Murdoch University, Murdoch, Australia
- Department of Terrestrial Zoology, Western Australian Museum, Perth, Australia
- Zoological Museum Hamburg, Leibnitz Institute for the Analysis of Biodiversity Change (LIB), Centre for Taxonomy & Morphology Hamburg, Germany
| | | | - Cor J. Vink
- Zoological Museum Hamburg, Leibnitz Institute for the Analysis of Biodiversity Change (LIB), Centre for Taxonomy & Morphology Hamburg, Germany
- Department of Pest-management and Conservation, Lincoln University, Lincoln, New Zealand
| |
Collapse
|
23
|
Ferreira-Sousa L, Rocha PN, Motta PC, Gawryszewski FM. Shaped by the Sun: the effect of exposure to sunlight on the evolution of spider bodies. Biol Lett 2021; 17:20210369. [PMID: 34753293 PMCID: PMC8580474 DOI: 10.1098/rsbl.2021.0369] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Accepted: 10/18/2021] [Indexed: 11/12/2022] Open
Abstract
Body temperature can strongly influence fitness. Some Sun-exposed ectotherms thermoregulate by adjusting body posture according to the Sun's position. In these species, body elongation should reduce the risk of heat stress by allowing the exposure of a smaller body area to sunlight. Therefore, selection should favour more elongated bodies in Sun-exposed than in Sun-protected species. Diurnal orb-web spider species that sit on their webs are more likely to be Sun-exposed, on average, than nocturnal or diurnal shelter-building species. We measured the body elongation of orb-web spiders (Araneae, Araneidae) across 1024 species and classified them as Sun-protected or exposed based on the literature. We found that Sun-exposed species evolved more elongate bodies than Sun-protected ones. Further, we built a model combining traditional heat transfer models with models of thermoregulatory postures in orb-web spiders and meteorological data. The model indicates that body elongation in large orb-web spiders decreases the risk of high body temperatures. Overall, our results suggest that Sun exposure influenced the evolution of body shapes of orb-web spiders.
Collapse
Affiliation(s)
| | - Pedro N. Rocha
- Departamento de Zoologia, Universidade de Brasília, Brasília, DF, Brazil
| | - Paulo C. Motta
- Departamento de Zoologia, Universidade de Brasília, Brasília, DF, Brazil
| | | |
Collapse
|
24
|
Tyagi K, Tyagi I, Kumar V. Insights into the gut bacterial communities of spider from wild with no evidence of phylosymbiosis. Saudi J Biol Sci 2021; 28:5913-5924. [PMID: 34588907 PMCID: PMC8459122 DOI: 10.1016/j.sjbs.2021.06.059] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Revised: 06/16/2021] [Accepted: 06/20/2021] [Indexed: 12/13/2022] Open
Abstract
In the present study, an effort has been made to elucidate the gut bacterial diversity of twelve species of the family Araneidae under three subfamilies collected from 5 states of India along with their predicted metabolic role in functional metabolism. Further, we also compared the host species phylogeny based on partial cytochrome c oxidase subunit I (COI) sequences with the gut bacteria composition dendrogram to decipher the phylosymbiotic relationships. Analysis revealed the presence of 22 bacterial phyla, 145 families, and 364 genera in the gut, with Proteobacteria, Firmicutes, Actinobacteria, and Deinococcus-Thermus as the highest abundant phyla. Moreover, phylum Bacteriodetes was dominated only in Cyclosa mulmeinensis and Chlamydiae in Neoscona bengalensis. At the genus level, Bacillus, Acinetobacter, Cutibacterium, Pseudomonas, and Staphylococcus were the most dominant genera. Furthermore, the genus Prevotella was observed only in Cyclosa mulmeinensis, and endosymbiont Wolbachia only in Eriovixia laglaizei. The differential abundance analysis (DeSeq2) revealed the 19 significant ASVs represented by the genera like Acinetobacter, Vagoccoccus, Prevotella, Staphylococcus, Curvibacter, Corynebacterium, Paracoccus, Streptococcus, Microbacterium, and Pseudocitrobacter. The inter- and intra-subfamilies comparison based on diversity indices (alpha and beta diversity) revealed that the subfamily Araneinae have high richness and diversity than Argiopinae and Gasteracanthinae. The phylosymbiotic analysis revealed that there is no congruence between the gut bacteria composition dendrogram with their host phylogeny.
Collapse
Affiliation(s)
| | | | - Vikas Kumar
- Centre for DNA Taxonomy, Molecular Systematics Division, Zoological Survey of India, Kolkata 700053, India
| |
Collapse
|
25
|
Hacala A, Lafage D, Prinzing A, Sawtschuk J, Pétillon J. Drivers of taxonomic, functional and phylogenetic diversities in dominant ground-dwelling arthropods of coastal heathlands. Oecologia 2021; 197:511-522. [PMID: 34535833 DOI: 10.1007/s00442-021-05032-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2020] [Accepted: 08/31/2021] [Indexed: 11/29/2022]
Abstract
Although functional and phylogenetic diversities are increasingly used in ecology for a variety of purposes, their relationship remains unclear, and this relationship likely differs among taxa, yet most recent studies focused on plants. We hypothesize that communities may be diverse in functional traits due to presence of: many phylogenetic lineages, trait divergence within lineages, many species and random functional variation among species, weak filtering of traits in favorable environments, or strong trait divergence in unfavorable environments. We tested these predictions for taxa showing higher (ants), or lower (spiders, ground beetles) degrees of competition and niche construction, both of which might decouple functional traits from phylogenetic position or from the environment. Studying > 11,000 individuals and 216 species from coastal heathlands, we estimated functional as minimum spanning trees using traits related to the morphology, feeding habits and dispersal, respectively. Relationships between functional and phylogenetic diversities were overall positive and strong. In ants, this relationship disappeared after accounting for taxonomic diversities and environments, whereas in beetles and spiders taxonomic diversity is related to functional diversity only via increasing phylogenetic diversity. Environmental constraints reduced functional diversity in ants, but affected functional diversity only indirectly via phylogenetic diversity (ground beetles) and taxonomic and then phylogenetic diversity (spiders and ground beetles). Results are consistent with phylogenetic conservatism in traits in spiders and ground beetles. In ants, in contrast, traits appear more phylogenetically neutral with any new species potentially representing a new trait state, tentatively suggesting that competition or niche construction might decouple phylogenetics from trait diversity.
Collapse
Affiliation(s)
- Axel Hacala
- UMR CNRS 6553 Ecobio, Université de Rennes, 263 Avenue du Gal Leclerc, CS 74205, 35042, Rennes Cedex, France. .,EA Géoarchitecture: Territoires, Urbanisation, Biodiversité, Environnement, Université de Bretagne Occidentale, CS 93837, 29238, Brest Cedex 3, France.
| | - Denis Lafage
- UMR CNRS 6553 Ecobio, Université de Rennes, 263 Avenue du Gal Leclerc, CS 74205, 35042, Rennes Cedex, France.,Department of Environmental and Life Sciences/Biology, Karlstad University, Karlstad, Sweden
| | - Andreas Prinzing
- UMR CNRS 6553 Ecobio, Université de Rennes, 263 Avenue du Gal Leclerc, CS 74205, 35042, Rennes Cedex, France
| | - Jérôme Sawtschuk
- EA Géoarchitecture: Territoires, Urbanisation, Biodiversité, Environnement, Université de Bretagne Occidentale, CS 93837, 29238, Brest Cedex 3, France
| | - Julien Pétillon
- UMR CNRS 6553 Ecobio, Université de Rennes, 263 Avenue du Gal Leclerc, CS 74205, 35042, Rennes Cedex, France
| |
Collapse
|
26
|
Arnedo MA, Hormiga G. Repeated colonization, adaptive radiation and convergent evolution in the sheet-weaving spiders (Linyphiidae) of the south Pacific Archipelago of Juan Fernandez. Cladistics 2021; 37:317-342. [PMID: 34478200 DOI: 10.1111/cla.12437] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/18/2020] [Indexed: 12/25/2022] Open
Abstract
We report on the colonization and diversification of linyphiid spiders in the Pacific oceanic archipelago of Juan Fernandez. About 50 spider species occur naturally in these islands, most of them endemic and about half of them are linyphiids. Linyphiidae includes no fewer than 15 species of Laminacauda and three of Neomaso (with several additional undescribed species in the latter genus), all of them single island endemics. There are three additional linyphiid endemic genera, two monotypic and one, Juanfernandezia, with two species. Unlike the rather uniform somatic morphology and small ground sheet webs of the continental Laminacauda and Neomaso species, the Juan Fernandez endemics exhibit morphological features and life history traits that are very rare or unknown in any other linyphiids. A multi-locus phylogenetic analysis confirms at least five independent Juan Fernandez colonizations of Linyphiidae, two within the same genus, and three of which underwent subsequent local diversification. Different calibrations suggest alternative colonization timelines, some at odds with island ages, but all agree on similar diversification timings of the endemic lineages. Rare phenotypic traits (e.g. gigantism, massive chelicerae or elongated legs) evolved multiple times independently within the islands. Based on the remarkable levels of eco-phenotypic differentiation in locally diversified species showing densely packed distributions, we propose that Laminacauda, and probably Neomaso, constitute a case of adaptive radiation.
Collapse
Affiliation(s)
- Miquel A Arnedo
- Department of Evolutionary Biology, Ecology & Environmental Sciences and Biodiversity Research Institute (IRBio), Universitat de Barcelona, Barcelona, Catalonia, 08028, Spain
| | - Gustavo Hormiga
- Department of Biological Sciences, The George Washington University, Washington, D.C., 20052, USA
| |
Collapse
|
27
|
Kallal RJ, Kulkarni SS, Dimitrov D, Benavides LR, Arnedo MA, Giribet G, Hormiga G. Converging on the orb: denser taxon sampling elucidates spider phylogeny and new analytical methods support repeated evolution of the orb web. Cladistics 2021; 37:298-316. [PMID: 34478199 DOI: 10.1111/cla.12439] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/02/2020] [Indexed: 12/20/2022] Open
Abstract
High throughput sequencing and phylogenomic analyses focusing on relationships among spiders have both reinforced and upturned long-standing hypotheses. Likewise, the evolution of spider webs-perhaps their most emblematic attribute-is being understood in new ways. With a matrix including 272 spider species and close arachnid relatives, we analyze and evaluate the relationships among these lineages using a variety of orthology assessment methods, occupancy thresholds, tree inference methods and support metrics. Our analyses include families not previously sampled in transcriptomic analyses, such as Symphytognathidae, the only araneoid family absent in such prior works. We find support for the major established spider lineages, including Mygalomorphae, Araneomorphae, Synspermiata, Palpimanoidea, Araneoidea and the Retrolateral Tibial Apophysis Clade, as well as the uloborids, deinopids, oecobiids and hersiliids Grade. Resulting trees are evaluated using bootstrapping, Shimodaira-Hasegawa approximate likelihood ratio test, local posterior probabilities and concordance factors. Using structured Markov models to assess the evolution of spider webs while accounting for hierarchically nested traits, we find multiple convergent occurrences of the orb web across the spider tree-of-life. Overall, we provide the most comprehensive spider tree-of-life to date using transcriptomic data and use new methods to explore controversial issues of web evolution, including the origins and multiple losses of the orb web.
Collapse
Affiliation(s)
- Robert J Kallal
- Department of Biological Sciences, The George Washington University, 2029 G St. NW, Washington, DC, 20052, USA.,Department of Entomology, National Museum of Natural History, 10th & Constitution Ave. NW, Washington, DC, 20560, USA
| | - Siddharth S Kulkarni
- Department of Biological Sciences, The George Washington University, 2029 G St. NW, Washington, DC, 20052, USA.,Department of Entomology, National Museum of Natural History, 10th & Constitution Ave. NW, Washington, DC, 20560, USA
| | - Dimitar Dimitrov
- Department of Natural History, University Museum of Bergen, University of Bergen, P.O. Box 7800, Bergen, 5020, Norway
| | - Ligia R Benavides
- Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA, 02138, USA
| | - Miquel A Arnedo
- Department of Evolutionary Biology, Ecology and Environmental Sciences, Biodiversity Research Institute (IRBio), Universitat de Barcelona, Avinguda Diagonal 643, Barcelona, Spain
| | - Gonzalo Giribet
- Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA, 02138, USA
| | - Gustavo Hormiga
- Department of Biological Sciences, The George Washington University, 2029 G St. NW, Washington, DC, 20052, USA
| |
Collapse
|
28
|
Framenau VW, Vink CJ, McQuillan BN, Simpson AH. A new genus for a large, endemic orb-weaving spider (Araneae, Araneidae) from New Zealand. NEW ZEALAND JOURNAL OF ZOOLOGY 2021. [DOI: 10.1080/03014223.2021.1951309] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Volker W. Framenau
- Harry Butler Institute, Murdoch University, Murdoch, Australia
- Department of Terrestrial Zoology, Western Australian Museum, Welshpool, DC, Australia
- Centrum für Naturkunde (CeNak), Universität Hamburg, Hamburg, Germany
| | - Cor J. Vink
- Centrum für Naturkunde (CeNak), Universität Hamburg, Hamburg, Germany
- Department of Pest-management and Conservation, Lincoln University, Lincoln, New Zealand
| | | | | |
Collapse
|
29
|
Framenau VW, Vink CJ, Scharff N, Baptista RLC, Castanheira PDS. Review of the Australian and New Zealand orb-weaving spider genus Novakiella (Araneae, Araneidae). ZOOSYST EVOL 2021. [DOI: 10.3897/zse.97.67788] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The orb-weaving spider genus Novakiella Court & Forster, 1993 (family Araneidae Clerck, 1757) is reviewed to include two species, N. trituberculosa (Roewer, 1942) (type species, Australia and New Zealand) and N. boletussp. nov. (Australia). Novakiella belongs to the informal, largely Australian ‘backobourkiine’ clade and shares with the other genera of the clade a single macroseta on the male pedipalp patella and a median apophysis of the male pedipalp that forms an arch over the radix. The proposed genus synapomorphies are the presence of a large basal conductor lobe expanding apically over the radix and the shape of the median apophysis, which extends into a basally directed, pointy projection. Males have an apico-prolateral spur on the tibia of the second leg that carries a distinct spine. Females have an epigyne with triangular base plate bearing transverse ridges and an elongate triangular scape, which is almost always broken off. The humeral humps of the abdomen are distinct. Novakiella trituberculosa build characteristic dome-shaped webs; however, the foraging behaviour and web-shape of N. boletussp. nov., currently only known from museum specimens, are not known.
Collapse
|
30
|
Ridel A, Lafage D, Devogel P, Lacoue-Labarthe T, Pétillon J. Habitat filtering differentially modulates phylogenetic and functional diversity relationships between predatory arthropods. ROYAL SOCIETY OPEN SCIENCE 2021; 8:202093. [PMID: 34109036 PMCID: PMC8170193 DOI: 10.1098/rsos.202093] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Accepted: 05/07/2021] [Indexed: 06/12/2023]
Abstract
Mechanisms underlying biological diversities at different scales have received significant attention over the last decades. The hypothesis of whether local abiotic factors, driving functional and phylogenetic diversities, can differ among taxa of arthropods remains under-investigated. In this study, we compared correlations and drivers of functional diversity (FD) and phylogenetic diversity (PD) between spiders and carabids, two dominant taxa of ground-dwelling arthropods in salt marshes. Both taxa exhibited high correlation between FD and PD; the correlation was even higher in carabids, probably owing to their lower species richness. Analyses using structural equation modelling highlighted that FD and PD were positively linked to taxonomic diversity (TD) in both taxa; however, abiotic factors driving the FD and PD differed between spiders and carabids. Salinity particularly drove the TD of carabids, but not that of spiders, suggesting that spiders are phenotypically more plastic and less selected by this factor. Conversely, PD was influenced by salinity in spiders, but not in carabids. This result can be attributed to the different evolutionary history and colonization process of salt marshes between the two model taxa. Finally, our study highlights that, in taxa occupying the same niche in a constrained habitat, FD and PD can have different drivers, and thereby different filtering mechanisms.
Collapse
Affiliation(s)
- Aurélien Ridel
- UMR CNRS 6553 Ecobio, Université de Rennes, 263 Avenue du Gal Leclerc, CS 74205, 35042 Rennes cedex, France
| | - Denis Lafage
- UMR CNRS 6553 Ecobio, Université de Rennes, 263 Avenue du Gal Leclerc, CS 74205, 35042 Rennes cedex, France
| | - Pierre Devogel
- UMR CNRS 6553 Ecobio, Université de Rennes, 263 Avenue du Gal Leclerc, CS 74205, 35042 Rennes cedex, France
| | - Thomas Lacoue-Labarthe
- UMR CNRS 7266 LIENSs, Université de La Rochelle, 2 Rue Olympe de Gouges, 17000 La Rochelle, France
| | - Julien Pétillon
- UMR CNRS 6553 Ecobio, Université de Rennes, 263 Avenue du Gal Leclerc, CS 74205, 35042 Rennes cedex, France
| |
Collapse
|
31
|
Macharoenboon K, Siriwut W, Jeratthitikul E. A review of the taxonomy of spiny-backed orb-weaving spiders of the subfamily Gasteracanthinae (Araneae, Araneidae) in Thailand. Zookeys 2021; 1032:17-62. [PMID: 33958915 PMCID: PMC8065025 DOI: 10.3897/zookeys.1032.62001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Accepted: 03/17/2021] [Indexed: 11/12/2022] Open
Abstract
Spiny-backed orb-weaving spiders of the subfamily Gasteracanthinae are broadly distributed in the Old World. Despite their use as a model species in biology, evolution, and behavior because of their extraordinary characteristics, the systematics of this group of spiders are still poorly understood. This study elucidates the systematics of Gasteracanthinae in Thailand based on morphological and molecular-based analyses. In total, seven species from three genera, namely Gasteracantha, Macracantha, and Thelacantha, were recorded in Thailand. Shape of abdominal spines, pattern of sigilla, and female genitalia are significant characters for species identification. In contrast, coloration shows highly intraspecific variation in most species within Gasteracanthinae. A phylogenetic tree based on partial sequences of COI, 16S, and H3 genes recovered Gasteracanthinae as a monophyletic group and supports the existence of three clades. Gasteracantha hasselti is placed as a sister taxon to Macracantha arcuata. Hence, we propose to transfer G. hasselti to Macracantha. Moreover, molecular species delimitation analyses (ABGD, bPTP, and GMYC) using 675 bp of COI gene support all nominal species, with evidence of possible additional cryptic species.
Collapse
Affiliation(s)
- Kongkit Macharoenboon
- Animal Systematics and Molecular Ecology Laboratory, Department of Biology, Faculty of Science, Mahidol University, Bangkok 10400, ThailandAnimal Systematics and Molecular Ecology Laboratory, Department of Biology, Faculty of Science, Mahidol UniversityBangkokThailand
| | - Warut Siriwut
- Animal Systematics and Molecular Ecology Laboratory, Department of Biology, Faculty of Science, Mahidol University, Bangkok 10400, ThailandAnimal Systematics and Molecular Ecology Laboratory, Department of Biology, Faculty of Science, Mahidol UniversityBangkokThailand
| | - Ekgachai Jeratthitikul
- Animal Systematics and Molecular Ecology Laboratory, Department of Biology, Faculty of Science, Mahidol University, Bangkok 10400, ThailandAnimal Systematics and Molecular Ecology Laboratory, Department of Biology, Faculty of Science, Mahidol UniversityBangkokThailand
| |
Collapse
|
32
|
Abstract
Spiders (Araneae) make up a remarkably diverse lineage of predators that have successfully colonized most terrestrial ecosystems. All spiders produce silk, and many species use it to build capture webs with an extraordinary diversity of forms. Spider diversity is distributed in a highly uneven fashion across lineages. This strong imbalance in species richness has led to several causal hypotheses, such as codiversification with insects, key innovations in silk structure and web architecture, and loss of foraging webs. Recent advances in spider phylogenetics have allowed testing of some of these hypotheses, but results are often contradictory, highlighting the need to consider additional drivers of spider diversification. The spatial and historical patterns of diversity and diversification remain contentious. Comparative analyses of spider diversification will advance only if we continue to make progress with studies of species diversity, distribution, and phenotypic traits, together with finer-scale phylogenies and genomic data.
Collapse
Affiliation(s)
- Dimitar Dimitrov
- Department of Natural History, University Museum of Bergen, University of Bergen, 5020 Bergen, Norway;
| | - Gustavo Hormiga
- Department of Biological Sciences, The George Washington University, Washington, DC 20052, USA;
| |
Collapse
|
33
|
Jordán JP, Domínguez-Trujillo M, Cisneros-Heredia DF. Phylogenetic placement of the spider genus Taczanowskia (Araneae:Araneidae) and description of a new species from Ecuador. INVERTEBR SYST 2021. [DOI: 10.1071/is20084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The genus Taczanowskia Keyserling, 1879 is one of the rarest groups of spiders in the orb-weaving family Araneidae, with only five species described and 17 specimens cited in publications. Our study provides new insights into the evolutionary relationships and diversity of Taczanowskia. Using morphological data, we tested the evolutionary relationships of the genus within the family Araneidae and propose the first phylogenetic hypothesis depicting the relationships among species of Taczanowskia. Our results place Taczanowskia as sister to Mastophora Holmberg, 1876, and confirm the monophyly of Taczanowskia. We describe the first species of Taczanowskia from Ecuador, collected at a Waorani community on the River Curaray basin, Amazonian lowlands of Ecuador. The new species can be easily diagnosed from all other species of Taczanowskia by having two tubercles in the opisthosoma; a distinct patchy dark–light colouration pattern with dark spots concentrated towards the anterior margin and on the lateral tips; small bundles of white setae forming a reticulum across the dorsal part of the opisthosoma, and the first two femora thick but lacking teeth on the margin.
ZooBank registration: urn:lsid:zoobank.org:pub:46B8C1F7-A474-4DC3-90BC-940F84AC099D
Collapse
|
34
|
Hopfe C, Ospina-Jara B, Scheibel T, Cabra-García J. Ocrepeira klamt sp. n. (Araneae: Araneidae), a novel spider species from an Andean páramo in Colombia. PLoS One 2020; 15:e0237499. [PMID: 32833963 PMCID: PMC7446859 DOI: 10.1371/journal.pone.0237499] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Accepted: 07/24/2020] [Indexed: 11/19/2022] Open
Abstract
Herein we describe Ocrepeira klamt sp. n. (Araneae: Araneidae), a new orb-weaving spider species from a Colombian páramo, which was formerly inaccessible for scientific studies due to decades long armed conflicts. Both, phenotypic and molecular data are used to confirm genus affiliation, and the new species is placed into phylogenetic context with other araneid spiders. Morphological characteristics and ecological notes of Ocrepeira klamt sp. n. are reported together with the sequence of the barcoding region of cytochrome c oxidase subunit I (COI) to provide a comprehensive description of the spider, facilitating future identification beyond taxonomic experts. With this study we contribute to the taxonomic knowledge that is required to inventory the hyper diverse yet threatened ecosystem of the Colombian páramos.
Collapse
Affiliation(s)
- Charlotte Hopfe
- Department of Biomaterials, Universität Bayreuth, Bayreuth, Germany
| | - Bryan Ospina-Jara
- Department of Biology, Universidad del Valle, Cali, Valle del Cauca, Colombia
| | - Thomas Scheibel
- Department of Biomaterials, Universität Bayreuth, Bayreuth, Germany
- Forschungszentrum für Bio-Makromoleküle, Universität Bayreuth, Bayreuth, Germany
- Bayreuther Zentrum für Kolloide und Grenzflächen, Universität Bayreuth, Bayreuth, Germany
- Bayreuther Materialzentrum, Universität Bayreuth, Bayreuth, Germany
- Bayreuther Zentrum für Molekulare Biowissenschaften, Universität Bayreuth, Bayreuth, Germany
- Bayrisches Polymerinstitut, Universität Bayreuth, Bayreuth, Germany
| | - Jimmy Cabra-García
- Department of Biology, Universidad del Valle, Cali, Valle del Cauca, Colombia
| |
Collapse
|
35
|
Chamberland L, Salgado-Roa FC, Basco A, Crastz-Flores A, Binford GJ, Agnarsson I. Phylogeography of the widespread Caribbean spiny orb weaver Gasteracantha cancriformis. PeerJ 2020; 8:e8976. [PMID: 32391201 PMCID: PMC7196328 DOI: 10.7717/peerj.8976] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Accepted: 03/24/2020] [Indexed: 12/18/2022] Open
Abstract
BACKGROUND Modern molecular analyses are often inconsistent with pre-cladistic taxonomic hypotheses, frequently indicating higher richness than morphological taxonomy estimates. Among Caribbean spiders, widespread species are relatively few compared to the prevalence of single island endemics. The taxonomic hypothesis Gasteracantha cancriformis circumscribes a species with profuse variation in size, color and body form. Distributed throughout the Neotropics, G. cancriformis is the only morphological species of Gasteracantha in the New World in this globally distributed genus. METHODS We inferred phylogenetic relationships across Neotropical populations of Gasteracantha using three target genes. Within the Caribbean, we estimated genetic diversity, population structure, and gene flow among island populations. RESULTS Our findings revealed a single widespread species of Gasteracantha throughout the Caribbean, G. cancriformis, while suggesting two recently divergent mainland populations that may represent separate species, diverging linages, or geographically isolated demes. The concatenated and COI (Cytochrome c oxidase subunit 1) phylogeny supported a Caribbean clade nested within the New World. Genetic variability was high between island populations for our COI dataset; however, gene flow was also high, especially between large, adjacent islands. We found structured genetic and morphological variation within G. cancriformis island populations; however, this variation does not reflect genealogical relationships. Rather, isolation by distance and local morphological adaptation may explain the observed variation.
Collapse
Affiliation(s)
- Lisa Chamberland
- Department of Biology, University of Vermont, Burlington, VT, USA
| | - Fabian C. Salgado-Roa
- Biology Program, Faculty of Natural Sciences and Mathematics, Universidad del Rosario, Bogota, Colombia
| | - Alma Basco
- University of Puerto Rico at Rio Piedras, San Juan, Puerto Rico
| | | | | | - Ingi Agnarsson
- Department of Biology, University of Vermont, Burlington, VT, USA
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
| |
Collapse
|
36
|
Kallal RJ, Dimitrov D, Arnedo MA, Giribet G, Hormiga G. Monophyly, Taxon Sampling, and the Nature of Ranks in the Classification of Orb-Weaving Spiders (Araneae: Araneoidea). Syst Biol 2020; 69:401-411. [PMID: 31165170 DOI: 10.1093/sysbio/syz043] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2019] [Revised: 05/21/2019] [Accepted: 05/24/2019] [Indexed: 12/25/2022] Open
Abstract
We address some of the taxonomic and classification changes proposed by Kuntner et al. (2019) in a comparative study on the evolution of sexual size dimorphism in nephiline spiders. Their proposal to recircumscribe araneids and to rank the subfamily Nephilinae as a family is fundamentally flawed as it renders the family Araneidae paraphyletic. We discuss the importance of monophyly, outgroup selection, and taxon sampling, the subjectivity of ranks, and the implications of the age of origin criterion to assign categorical ranks in biological classifications. We explore the outcome of applying the approach of Kuntner et al. (2019) to the classification of spiders with emphasis on the ecribellate orb-weavers (Araneoidea) using a recently published dated phylogeny. We discuss the implications of including the putative sister group of Nephilinae (the sexually dimorphic genus Paraplectanoides) and the putative sister group of Araneidae (the miniature, monomorphic family Theridiosomatidae). We propose continuation of the phylogenetic classification put forth by Dimitrov et al. (2017), and we formally rank Nephilinae and Phonognathinae as subfamilies of Araneidae. Our classification better reflects the understanding of the phylogenetic placement and evolutionary history of nephilines and phonognathines while maintaining the diagnosability of Nephilinae. It also fulfills the fundamental requirement that taxa must be monophyletic, and thus avoids the paraphyly of Araneidae implied by Kuntner et al. (2019).
Collapse
Affiliation(s)
- Robert J Kallal
- Department of Biological Sciences, The George Washington University, 2029 G St. NW, Washington, DC 20052, USA
| | - Dimitar Dimitrov
- Department of Natural History, University Museum of Bergen, University of Bergen, P.O. Box 7800, 5020 Bergen, Norway
| | - Miquel A Arnedo
- Department of Evolutionary Biology, Ecology and Environmental Sciences, & Biodiversity Research Institute (IRBio) Universitat de Barcelona, Avinguda Diagonal 643, Barcelona, Spain.,Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA
| | - Gonzalo Giribet
- Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA
| | - Gustavo Hormiga
- Department of Biological Sciences, The George Washington University, 2029 G St. NW, Washington, DC 20052, USA
| |
Collapse
|
37
|
Blamires SJ, Little DJ, White TE, Kane DM. Photoreflectance/scattering measurements of spider silks informed by standard optics. ROYAL SOCIETY OPEN SCIENCE 2020; 7:192174. [PMID: 32431892 PMCID: PMC7211891 DOI: 10.1098/rsos.192174] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/13/2019] [Accepted: 03/30/2020] [Indexed: 06/11/2023]
Abstract
The silks of certain orb weaving spiders are emerging as high-quality optical materials. This motivates study of the optical properties of such silk and particularly the comparative optical properties of the silks of different species. Any differences in optical properties may impart biological advantage for a spider species and make the silks interesting for biomimetic prospecting as optical materials. A prior study of the reflectance of spider silks from 18 species reported results for three species of modern orb weaving spiders (Nephila clavipes, Argiope argentata and Micrathena Schreibersi) as having reduced reflectance in the UV range. (Modern in the context used here means more recently derived.) The reduced UV reflectance was interpreted as an adaptive advantage in making the silks less visible to insects. Herein, a standard, experimental technique for measuring the reflectance spectrum of diffuse surfaces, using commercially available equipment, has been applied to samples of the silks of four modern species of orb weaving spiders: Phonognatha graeffei, Eriophora transmarina, Nephila plumipes and Argiope keyserlingi. This is a different technique than used in the previous study. Three of the four silks measured have a reduced signal in the UV. By taking the form of the silks as optical elements into account, it is shown that this is attributable to a combination of wavelength-dependent absorption and scattering by the silks rather than differences in reflectance for the different silks. Phonognatha graeffei dragline silk emerges as a very interesting spider silk with a flat 'reflectance'/scattering spectrum which may indicate it is a low UV absorbing dielectric micro-fibre. Overall the measurement emerges as having the potential to compare the large numbers of silks from different species to prospect for those which have desirable optical properties.
Collapse
Affiliation(s)
- Sean J. Blamires
- Evolution and Ecology Research Centre, School of Biology, Earth and Environmental Sciences, University of New South Wales, UNSWSydney NSW 2052, Australia
| | - Douglas J. Little
- Macquarie University Photonics Research Centre and Department of Physics and Astronomy, Macquarie University, Sydney NSW 2109, Australia
| | - Thomas E. White
- School of Life and Environmental Sciences, The University of Sydney, NSW 2006, Australia
| | - Deb M. Kane
- Macquarie University Photonics Research Centre and Department of Physics and Astronomy, Macquarie University, Sydney NSW 2109, Australia
| |
Collapse
|
38
|
Klyuchko OM. AROMATIC HYDROCARBONS OF Arthropodae SPECIES: MECHANISMS OF ACTION ON BIOLOGICAL MEMBRANES AND PERSPECTIVES OF BIOMEDICAL APPLICATION. BIOTECHNOLOGIA ACTA 2020. [DOI: 10.15407/biotech13.02.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
|
39
|
Magalhaes ILF, Azevedo GHF, Michalik P, Ramírez MJ. The fossil record of spiders revisited: implications for calibrating trees and evidence for a major faunal turnover since the Mesozoic. Biol Rev Camb Philos Soc 2020; 95:184-217. [PMID: 31713947 DOI: 10.1111/brv.12559] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2019] [Revised: 09/06/2019] [Accepted: 09/10/2019] [Indexed: 01/24/2023]
Abstract
Studies in evolutionary biology and biogeography increasingly rely on the estimation of dated phylogenetic trees using molecular clocks. In turn, the calibration of such clocks is critically dependent on external evidence (i.e. fossils) anchoring the ages of particular nodes to known absolute ages. In recent years, a plethora of new fossil spiders, especially from the Mesozoic, have been described, while the number of studies presenting dated spider phylogenies based on fossil calibrations increased sharply. We critically evaluate 44 of these studies, which collectively employed 67 unique fossils in 180 calibrations. Approximately 54% of these calibrations are problematic, particularly regarding unsupported assignment of fossils to extant clades (44%) and crown (rather than stem) dating (9%). Most of these cases result from an assumed equivalence between taxonomic placement of fossils and their phylogenetic position. To overcome this limitation, we extensively review the literature on fossil spiders, with a special focus on putative synapomorphies and the phylogenetic placement of fossil species with regard to their importance for calibrating higher taxa (families and above) in the spider tree of life. We provide a curated list including 41 key fossils intended to be a basis for future estimations of dated spider phylogenies. In a second step, we use a revised set of 23 calibrations to estimate a new dated spider tree of life based on transcriptomic data. The revised placement of key fossils and the new calibrated tree are used to resolve a long-standing debate in spider evolution - we tested whether there has been a major turnover in the spider fauna between the Mesozoic and Cenozoic. At least 17 (out of 117) extant families have been recorded from the Cretaceous, implying that at least 41 spider lineages in the family level or above crossed the Cretaeous-Paleogene (K-Pg) boundary. The putative phylogenetic affinities of families known only from the Mesozoic suggest that at least seven Cretaceous families appear to have no close living relatives and might represent extinct lineages. There is no unambiguous fossil evidence of the retrolateral tibial apophysis clade (RTA-clade) in the Mesozoic, although molecular clock analyses estimated the major lineages within this clade to be at least ∼100 million years old. Our review of the fossil record supports a major turnover showing that the spider faunas in the Mesozoic and the Cenozoic are very distinct at high taxonomic levels, with the Mesozoic dominated by Palpimanoidea and Synspermiata, while the Cenozoic is dominated by Araneoidea and RTA-clade spiders.
Collapse
Affiliation(s)
- Ivan L F Magalhaes
- División Aracnología, Museo Argentino de Ciencias Naturales "Bernardino Rivadavia" - CONICET, Av. Ángel Gallardo 470, Buenos Aires, C1405DJR, Argentina
| | - Guilherme H F Azevedo
- División Aracnología, Museo Argentino de Ciencias Naturales "Bernardino Rivadavia" - CONICET, Av. Ángel Gallardo 470, Buenos Aires, C1405DJR, Argentina
| | - Peter Michalik
- Zoologisches Institut und Museum, Universität Greifswald, Loitzer Straβe 26, Greifswald, D-17489, Germany
| | - Martín J Ramírez
- División Aracnología, Museo Argentino de Ciencias Naturales "Bernardino Rivadavia" - CONICET, Av. Ángel Gallardo 470, Buenos Aires, C1405DJR, Argentina
| |
Collapse
|
40
|
Kuntner M, Coddington JA. Sexual Size Dimorphism: Evolution and Perils of Extreme Phenotypes in Spiders. ANNUAL REVIEW OF ENTOMOLOGY 2020; 65:57-80. [PMID: 31573828 DOI: 10.1146/annurev-ento-011019-025032] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Sexual size dimorphism is one of the most striking animal traits, and among terrestrial animals, it is most extreme in certain spider lineages. The most extreme sexual size dimorphism (eSSD) is female biased. eSSD itself is probably an epiphenomenon of gendered evolutionary drivers whose strengths and directions are diverse. We demonstrate that eSSD spider clades are aberrant by sampling randomly across all spiders to establish overall averages for female (6.9 mm) and male (5.6 mm) size. At least 16 spider eSSD clades exist. We explore why the literature does not converge on an overall explanation for eSSD and propose an equilibrium model featuring clade- and context-specific drivers of gender size variation. eSSD affects other traits such as sexual cannibalism, genital damage, emasculation, and monogyny with terminal investment. Coevolution with these extreme sexual phenotypes is termed eSSD mating syndrome. Finally, as costs of female gigantism increase with size, eSSD may represent an evolutionary dead end.
Collapse
Affiliation(s)
- Matjaž Kuntner
- Evolutionary Zoology Laboratory, Department of Organisms and Ecosystems Research, National Institute of Biology, SI-1000 Ljubljana, Slovenia;
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20560-0105, USA;
- Evolutionary Zoology Laboratory, Institute of Biology ZRC SAZU, SI-1001 Ljubljana, Slovenia
| | - Jonathan A Coddington
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20560-0105, USA;
| |
Collapse
|
41
|
Kallal RJ, Hormiga G. Phylogenetic placement of the stone-nest orb-weaving spider Nemoscolus Simon, 1895 (Araneae : Araneidae) and the description of the first species from Australia. INVERTEBR SYST 2020. [DOI: 10.1071/is20035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The spider genus Nemoscolus Simon, 1895 (Araneidae) has been neglected taxonomically despite the unique retreat that several species construct in their horizontal orb-webs, composed of pebbles and other detritus. The distribution of Nemoscolus is poorly known and the genus includes species from Africa and Europe. Nemoscolus is placed in Simon’s Cycloseae species group along with Cyclosa Menge, 1866, Acusilas Simon, 1895, Arachnura Vinson, 1863, Witica O. Pickard-Cambridge, 1895, among others. Here we describe a new species from Queensland, Australia, N. sandersi, sp. nov., drastically expanding the distribution range of the genus. We use nucleotide sequence data to phylogenetically place Nemoscolus using model-based inference methods within Araneidae and to explore its affinities to Simon’s Cycloseae. The data support propinquity of Nemoscolus with Acusilas and Arachnura but not with Cyclosa. Our analyses suggest that Cycloseae is not a clade, with Cyclosa, Acusilas, Witica and Nemoscolus not sharing a recent common ancestor. This use of an integrated granular retreat represents at least the second independent evolution of such a structure within Araneidae. These results improve our understanding of both phylogeny and retreat evolution in araneid spiders.
Collapse
|
42
|
Cabra-García J, Hormiga G. Exploring the impact of morphology, multiple sequence alignment and choice of optimality criteria in phylogenetic inference: a case study with the Neotropical orb-weaving spider genus Wagneriana (Araneae: Araneidae). Zool J Linn Soc 2019. [DOI: 10.1093/zoolinnean/zlz088] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Abstract
We present a total evidence phylogenetic analysis of the Neotropical orb-weaving spider genus Wagneriana and discuss the phylogenetic impacts of methodological choices. We analysed 167 phenotypic characters and nine loci scored for 115 Wagneriana and outgroups, including 46 newly sequenced species. We compared total evidence analyses and molecular-only analyses to evaluate the impact of phenotypic evidence, and we performed analyses using the programs POY, TNT, RAxML, GARLI, IQ-TREE and MrBayes to evaluate the effects of multiple sequence alignment and optimality criteria. In all analyses, Wagneriana carimagua and Wagneriana uropygialis were nested in the genera Parawixia and Alpaida, respectively, and the remaining species of Wagneriana fell into three main clades, none of which formed a pair of sister taxa. However, sister-group relationships among the main clades and their internal relationships were strongly influenced by methodological choices. Alignment methods had comparable topological effects to those of optimality criteria in terms of ‘subtree pruning and regrafting’ moves. The inclusion of phenotypic evidence, 2.80–3.05% of the total evidence matrices, increased support irrespective of the optimality criterion used. The monophyly of some groups was recovered only after the addition of morphological characters. A new araneid genus, Popperaneus gen. nov., is erected, and Paraverrucosa is resurrected. Four new synonymies and seven new combinations are proposed.
Collapse
Affiliation(s)
- Jimmy Cabra-García
- Departamento de Biología, Universidad del Valle, Cali, AA, Colombia
- Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil
| | - Gustavo Hormiga
- The George Washington University, Department of Biological Sciences, Washington, DC, USA
| |
Collapse
|
43
|
Kulkarni S, Wood H, Lloyd M, Hormiga G. Spider-specific probe set for ultraconserved elements offers new perspectives on the evolutionary history of spiders (Arachnida, Araneae). Mol Ecol Resour 2019; 20:185-203. [PMID: 31599100 DOI: 10.1111/1755-0998.13099] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2019] [Revised: 09/11/2019] [Accepted: 09/24/2019] [Indexed: 11/29/2022]
Abstract
Phylogenomic methods have proven useful for resolving deep nodes and recalcitrant groups in the spider tree of life. Across arachnids, transcriptomic approaches may generate thousands of loci, and target-capture methods, using the previously designed arachnid-specific probe set, can target a maximum of about 1,000 loci. Here, we develop a specialized target-capture probe set for spiders that contains over 2,000 ultraconserved elements (UCEs) and then demonstrate the utility of this probe set through sequencing and phylogenetic analysis. We designed the 'spider-specific' probe set using three spider genomes (Loxosceles, Parasteatoda and Stegodyphus) and ensured that the newly designed probe set includes UCEs from the previously designed Arachnida probe set. The new 'spider-specific' probes were used to sequence UCE loci in 51 specimens. The remaining samples included five spider genomes and taxa that were enriched using Arachnida probe set. The 'spider-specific' probes were also used to gather loci from a total of 84 representative taxa across Araneae. On mapping these 84 taxa to the Arachnida probe set, we captured at most 710 UCE loci, while the spider-specific probe set captured up to 1,547 UCE loci from the same taxon sample. Phylogenetic analyses using maximum likelihood and coalescent methods corroborate most nodes resolved by recent transcriptomic analyses, but not all (e.g. UCE data suggest monophyly of 'symphytognathoids'). Our preferred hypothesis based on topology tests, suggests monophyly of the 'symphytognathoids' (the miniature orb weavers), which in previous studies has only been supported by a combination of morphological and behavioural characters.
Collapse
Affiliation(s)
- Siddharth Kulkarni
- Department of Biological Sciences, The George Washington University, Washington, DC, USA
| | - Hannah Wood
- Department of Entomology, Smithsonian Institution, National Museum of Natural History, Washington, DC, USA
| | - Michael Lloyd
- Department of Entomology, Smithsonian Institution, National Museum of Natural History, Washington, DC, USA.,The Jackson Laboratory, Bar Harbor, ME, USA
| | - Gustavo Hormiga
- Department of Biological Sciences, The George Washington University, Washington, DC, USA
| |
Collapse
|
44
|
The Shape of Weaver: Investigating Shape Disparity in Orb-Weaving Spiders (Araneae, Araneidae) Using Geometric Morphometrics. Evol Biol 2019. [DOI: 10.1007/s11692-019-09482-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
|