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Bowen JL, Spivak AC, Bernhard AE, Fulweiler RW, Giblin AE. Salt marsh nitrogen cycling: where land meets sea. Trends Microbiol 2024; 32:565-576. [PMID: 37827901 DOI: 10.1016/j.tim.2023.09.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Revised: 09/13/2023] [Accepted: 09/14/2023] [Indexed: 10/14/2023]
Abstract
Salt marshes sit at the terrestrial-aquatic interface of oceans around the world. Unique features of salt marshes that differentiate them from their upland or offshore counterparts include high rates of primary production from vascular plants and saturated saline soils that lead to sharp redox gradients and a diversity of electron acceptors and donors. Moreover, the dynamic nature of root oxygen loss and tidal forcing leads to unique biogeochemical conditions that promote nitrogen cycling. Here, we highlight recent advances in our understanding of key nitrogen cycling processes in salt marshes and discuss areas where additional research is needed to better predict how salt marsh N cycling will respond to future environmental change.
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Affiliation(s)
- Jennifer L Bowen
- Department of Marine and Environmental Sciences, Northeastern University, 430 Nahant Rd, Nahant, MA, USA.
| | - Amanda C Spivak
- Department of Marine Sciences, University of Georgia, Athens, GA 30602, USA
| | - Anne E Bernhard
- Biology Department, Connecticut College, New London, CT 06320, USA
| | - Robinson W Fulweiler
- Department of Earth and Environment, Department of Biology, Boston University, Boston, MA, 02215, USA
| | - Anne E Giblin
- The Ecosystems Center, Marine Biological Laboratory, MA 02543, USA
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2
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Li J, Pei J, Fang C, Li B, Nie M. Drought may exacerbate dryland soil inorganic carbon loss under warming climate conditions. Nat Commun 2024; 15:617. [PMID: 38242894 PMCID: PMC10799000 DOI: 10.1038/s41467-024-44895-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Accepted: 01/09/2024] [Indexed: 01/21/2024] Open
Abstract
Low moisture conditions result in substantially more soil inorganic carbon (SIC) than soil organic carbon (SOC) in drylands. However, whether and how changes in moisture affect the temperature response of SIC in drylands are poorly understood. Here, we report that the temperature sensitivity of SIC dissolution increases but that of SOC decomposition decreases with increasing natural aridity from 30 dryland sites along a 4,500 km aridity gradient in northern China. To directly test the effects of moisture changes alone, a soil moisture control experiment also revealed opposite moisture effects on the temperature sensitivities of SIC and SOC. Moreover, we found that the temperature sensitivity of SIC was primarily regulated by pH and base cations, whereas that of SOC was mainly regulated by physicochemical protection along the aridity gradient. Given the overall increases in aridity in a warming world, our findings highlight that drought may exacerbate dryland soil carbon loss from SIC under warming.
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Affiliation(s)
- Jinquan Li
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, School of Life Sciences, Fudan University, Shanghai, 200438, China
| | - Junmin Pei
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, School of Life Sciences, Fudan University, Shanghai, 200438, China
- College of Life Sciences, Shanghai Normal University, Shanghai, 200234, China
| | - Changming Fang
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, School of Life Sciences, Fudan University, Shanghai, 200438, China
| | - Bo Li
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, School of Life Sciences, Fudan University, Shanghai, 200438, China
- Ministry of Education Key Laboratory for Transboundary Ecosecurity of Southwest China, School of Ecology and Environmental Science, Yunnan University, Kunming, 650504, Yunnan, China
| | - Ming Nie
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, School of Life Sciences, Fudan University, Shanghai, 200438, China.
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3
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Hansen PM, Even R, King AE, Lavallee J, Schipanski M, Cotrufo MF. Distinct, direct and climate-mediated environmental controls on global particulate and mineral-associated organic carbon storage. GLOBAL CHANGE BIOLOGY 2024; 30:e17080. [PMID: 38273571 DOI: 10.1111/gcb.17080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 11/02/2023] [Accepted: 11/09/2023] [Indexed: 01/27/2024]
Abstract
Identifying controls on soil organic carbon (SOC) storage, and where SOC is most vulnerable to loss, are essential to managing soils for both climate change mitigation and global food security. However, we currently lack a comprehensive understanding of the global drivers of SOC storage, especially with regards to particulate (POC) and mineral-associated organic carbon (MAOC). To better understand hierarchical controls on POC and MAOC, we applied path analyses to SOC fractions, climate (i.e., mean annual temperature [MAT] and mean annual precipitation minus potential evapotranspiration [MAP-PET]), carbon (C) input (i.e., net primary production [NPP]), and soil property data synthesized from 72 published studies, along with data we generated from the National Ecological Observatory Network soil pits (n = 901 total observations). To assess the utility of investigating POC and MAOC separately in understanding SOC storage controls, we then compared these results with another path analysis predicting bulk SOC storage. We found that POC storage is negatively related to MAT and soil pH, while MAOC storage is positively related to NPP and MAP-PET, but negatively related to soil % sand. Our path analysis predicting bulk SOC revealed similar trends but explained less variation in C storage than our POC and MAOC analyses. Given that temperature and pH impose constraints on microbial decomposition, this indicates that POC is primarily controlled by SOC loss processes. In contrast, strong relationships with variables related to plant productivity constraints, moisture, and mineral surface availability for sorption indicate that MAOC is primarily controlled by climate-driven variations in C inputs to the soil, as well as C stabilization mechanisms. Altogether, these results demonstrate that global POC and MAOC storage are controlled by separate environmental variables, further justifying the need to quantify and model these C fractions separately to assess and forecast the responses of SOC storage to global change.
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Affiliation(s)
- Paige M Hansen
- Department of Soil and Crop Sciences, Colorado State University, Fort Collins, Colorado, USA
- Graduate Degree Program in Ecology, Colorado State University, Fort Collins, Colorado, USA
| | - Rebecca Even
- Department of Soil and Crop Sciences, Colorado State University, Fort Collins, Colorado, USA
| | - Alison E King
- Department of Soil and Crop Sciences, Colorado State University, Fort Collins, Colorado, USA
| | - Jocelyn Lavallee
- Department of Soil and Crop Sciences, Colorado State University, Fort Collins, Colorado, USA
- Graduate Degree Program in Ecology, Colorado State University, Fort Collins, Colorado, USA
- Environmental Defense Fund, New York, New York, USA
| | - Meagan Schipanski
- Department of Soil and Crop Sciences, Colorado State University, Fort Collins, Colorado, USA
- Graduate Degree Program in Ecology, Colorado State University, Fort Collins, Colorado, USA
| | - M Francesca Cotrufo
- Department of Soil and Crop Sciences, Colorado State University, Fort Collins, Colorado, USA
- Graduate Degree Program in Ecology, Colorado State University, Fort Collins, Colorado, USA
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4
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Hall SJ, Tenesaca CG, Lawrence NC, Green DIS, Helmers MJ, Crumpton WG, Heaton EA, VanLoocke A. Poorly drained depressions can be hotspots of nutrient leaching from agricultural soils. JOURNAL OF ENVIRONMENTAL QUALITY 2023; 52:678-690. [PMID: 36763775 DOI: 10.1002/jeq2.20461] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Accepted: 01/27/2023] [Indexed: 05/06/2023]
Abstract
Much of the US Corn Belt has been drained with subsurface tile to improve crop production, yet poorly drained depressions often still flood intermittently, suppressing crop growth. Impacts of depressions on field-scale nutrient leaching are unclear. Poor drainage might promote denitrification and physicochemical retention of phosphorus (P), but ample availability of water and nutrients might exacerbate nutrient leaching from cropped depressions. We monitored nitrate, ammonium, and reactive P leaching across multiple depression-to-upland transects in north-central Iowa, using resin lysimeters buried and retrieved on an annual basis. Crops included conventional corn/soybean (Zea mays/Glycine max) rotations measured at fields with and without a winter rye (Secale cereale) cover crop, as well as juvenile miscanthus (Miscanthus × giganteus), a perennial grass. Leaching of nitrogen (N) and P was greater in depressions than in uplands for most transects and years. The median difference in nutrient leaching between paired depressions and uplands was 56 kg N ha-1 year-1 for nitrate (p = 0.0008), 0.6 kg N ha-1 year-1 for ammonium (p = 0.03), and 2.4 kg P ha-1 year-1 for reactive P (p = 0.006). Transects managed with a cover crop or miscanthus tended to have a smaller median difference in nitrate (but not ammonium or P) leaching between depressions and uplands. Cropped depressions may be disproportionate sources of N and P to downstream waters despite their generally poor drainage characteristics, and targeted management with cover crops or perennials might partially mitigate these impacts for N, but not necessarily for P.
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Affiliation(s)
- Steven J Hall
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA
| | - Carlos G Tenesaca
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA
| | - Nathaniel C Lawrence
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA
| | - David I S Green
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA
| | - Matthew J Helmers
- Department of Agricultural and Biosystems Engineering, Iowa State University, Ames, Iowa, USA
| | - William G Crumpton
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA
| | - Emily A Heaton
- Department of Agronomy, Iowa State University, Ames, Iowa, USA
- Department of Crop Sciences, University of Illinois Urbana-Champaign, Urbana, Illinois, USA
| | - Andy VanLoocke
- Department of Agronomy, Iowa State University, Ames, Iowa, USA
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Liu T, Liu X, Pan Q, Liu S, Feng X. Hydrodynamic and geochemical controls on soil carbon mineralization upon entry into aquatic systems. WATER RESEARCH 2023; 229:119499. [PMID: 36549186 DOI: 10.1016/j.watres.2022.119499] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2022] [Revised: 12/15/2022] [Accepted: 12/16/2022] [Indexed: 06/17/2023]
Abstract
Erosion is the most widespread form of soil degradation and an important pathway of carbon transfer from land into aquatic systems, with significant impact on water quality and carbon cycle. However, it remains debatable whether erosion induces a carbon source or sink, and the fate of eroded soil carbon in aquatic systems remains poorly constrained. Here, we collect 41 representative soils from seven erosion-influenced basins and conduct microcosm simulation experiments to examine the fate of soil carbon under three different scenarios. We showed that soil carbon mineralization was generally promoted (by up to 10 times) in water under turbulence relative to in soils, but suppressed under static conditions upon entering into aquatic systems. Moreover, the enhancement of mineralization in turbulent systems is primarily related to soil aggregate content, while suppression in static systems positively relates to macromolecule abundance, indicating that soil geochemistry affects the magnitude of hydrodynamic effects on carbon mineralization. Random forest model further predicts that erosion may induce significant carbon sources in basins dominated by turbulent waters and aggregate-rich soils. Our findings demonstrate hydrodynamic and geochemical controls on soil carbon mineralization upon delivery into aquatic systems, which is a non-negligible part of the boundless carbon cycle and must be considered when making region-specific conservation strategies to reduce CO2 emissions from inland waters.
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Affiliation(s)
- Ting Liu
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Xiaoqing Liu
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Qi Pan
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shaoda Liu
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, China
| | - Xiaojuan Feng
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China; University of Chinese Academy of Sciences, Beijing 100049, China.
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6
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Guo X, Mao X, Yu W, Xiao L, Wang M, Zhang S, Zheng J, Zhou H, Luo L, Chang J, Shi Z, Luo Z. A field incubation approach to evaluate the depth dependence of soil biogeochemical responses to climate change. GLOBAL CHANGE BIOLOGY 2023; 29:909-920. [PMID: 36300560 DOI: 10.1111/gcb.16505] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Accepted: 10/10/2022] [Indexed: 06/16/2023]
Abstract
Soil biogeochemical processes may present depth-dependent responses to climate change, due to vertical environmental gradients (e.g., thermal and moisture regimes, and the quantity and quality of soil organic matter) along soil profile. However, it is a grand challenge to distinguish such depth dependence under field conditions. Here we present an innovative, cost-effective and simple approach of field incubation of intact soil cores to explore such depth dependence. The approach adopts field incubation of two sets of intact soil cores: one incubated right-side up (i.e., non-inverted), and another upside down (i.e., inverted). This inversion keeps soil intact but changes the depth of the soil layer of same depth origin. Combining reciprocal translocation experiments to generate natural climate shift, we applied this incubation approach along a 2200 m elevational mountainous transect in southeast Tibetan Plateau. We measured soil respiration (Rs) from non-inverted and inverted cores of 1 m deep, respectively, which were exchanged among and incubated at different elevations. The results indicated that Rs responds significantly (p < .05) to translocation-induced climate shifts, but this response is depth-independent. As the incubation proceeds, Rs from both non-inverted and inverted cores become more sensitive to climate shifts, indicating higher vulnerability of persistent soil organic matter (SOM) to climate change than labile components, if labile substrates are assumed to be depleted with the proceeding of incubation. These results show in situ evidence that whole-profile SOM mineralization is sensitive to climate change regardless of the depth location. Together with measurements of vertical physiochemical conditions, the inversion experiment can serve as an experimental platform to elucidate the depth dependence of the response of soil biogeochemical processes to climate change.
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Affiliation(s)
- Xiaowei Guo
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Xiali Mao
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Wu Yu
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
- College of Resources and Environment, Tibet Agricultural and Animal Husbandry University, Nyingchi, China
| | - Liujun Xiao
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Mingming Wang
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Shuai Zhang
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Jinyang Zheng
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Hangxin Zhou
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Lun Luo
- South-East Tibetan Plateau Station for Integrated Observation and Research of Alpine Environment, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Nyingchi, China
| | - Jinfeng Chang
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
- Academy of Ecological Civilization, Zhejiang University, Hangzhou, China
- Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, Zhejiang University, Hangzhou, China
| | - Zhou Shi
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
- Academy of Ecological Civilization, Zhejiang University, Hangzhou, China
- Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, Zhejiang University, Hangzhou, China
| | - Zhongkui Luo
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
- Academy of Ecological Civilization, Zhejiang University, Hangzhou, China
- Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, Zhejiang University, Hangzhou, China
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7
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Li Q, Hu W, Li L, Li Y. Interactions between organic matter and Fe oxides at soil micro-interfaces: Quantification, associations, and influencing factors. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 855:158710. [PMID: 36099954 DOI: 10.1016/j.scitotenv.2022.158710] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Revised: 09/05/2022] [Accepted: 09/08/2022] [Indexed: 06/15/2023]
Abstract
Iron (Fe) oxides are widely recognized to prevent the degradation of organic matter (OM) in environments, thereby promoting the persistence of organic carbon (OC) in soils. Thus, discerning the association mechanisms of Fe oxides and OC interactions is key to effectively influencing the dynamics and extent of organic C cycling in soils. Previous studies have focused on i) quantifying Fe oxide-bound organic carbon (Fe-OC) in individual environments, ii) investigating the distribution and adsorption capacity of Fe-OC, and iii) assessing the redox cycling and transformation of Fe-OC. Furthermore, the widespread application of high-tech instrumentation and methods has greatly contributed to a better understanding of the mechanism of organic mineral assemblages in the past few decades. However, few literature reviews have comprehensively summarized Fe-OC distributions, associations, and characteristics in soil-plant systems. Here, studies investigating the Fe-OC contents among different environments are reviewed. In addition, the mechanisms and processes related to OM transformation dynamics occurring at mineral-organic interfaces are also described. Recent studies have highlighted that diverse interactions occur between Fe oxides and OC, with organic compounds adhering to Fe oxides due to their huge specific surfaces area and active reaction sites. Moreover, we also review methods for understanding Fe-OC interactions at micro-interfaces. Lastly, developmental prospects for understanding coupled Fe-OC geochemical processes in soil environments at molecular- and nano-scales are outlined. The summary suggests that combined advanced techniques and methods should be used in future research to explore micro-interfaces and in situ descriptions of organic mineral assemblages. This review also suggests that future studies need to consider the functional and spatial complexity that is typical of soil/sediment environments where Fe-OC interactions occur.
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Affiliation(s)
- Qi Li
- Institute of Agricultural Resources and Environment, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China; Key Laboratory of Plant Nutrition and Fertilizer in South Region, Ministry of Agriculture, Guangzhou 510640, China; Guangdong Key Laboratory of Nutrient Cycling and Farmland Conservation, Guangzhou 510640, China
| | - Weifang Hu
- Institute of Agricultural Resources and Environment, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China; Key Laboratory of Plant Nutrition and Fertilizer in South Region, Ministry of Agriculture, Guangzhou 510640, China; Guangdong Key Laboratory of Nutrient Cycling and Farmland Conservation, Guangzhou 510640, China
| | - Linfeng Li
- Institute of Agricultural Resources and Environment, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China; Key Laboratory of Plant Nutrition and Fertilizer in South Region, Ministry of Agriculture, Guangzhou 510640, China; Guangdong Key Laboratory of Nutrient Cycling and Farmland Conservation, Guangzhou 510640, China
| | - Yichun Li
- Institute of Agricultural Resources and Environment, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China; Key Laboratory of Plant Nutrition and Fertilizer in South Region, Ministry of Agriculture, Guangzhou 510640, China; Guangdong Key Laboratory of Nutrient Cycling and Farmland Conservation, Guangzhou 510640, China.
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Li Y, Chen Z, Chen J, Castellano MJ, Ye C, Zhang N, Miao Y, Zheng H, Li J, Ding W. Oxygen availability regulates the quality of soil dissolved organic matter by mediating microbial metabolism and iron oxidation. GLOBAL CHANGE BIOLOGY 2022; 28:7410-7427. [PMID: 36149390 DOI: 10.1111/gcb.16445] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2022] [Accepted: 09/16/2022] [Indexed: 06/16/2023]
Abstract
Dissolved organic matter (DOM) plays a vital role in biogeochemical processes and in determining the responses of soil organic matter (SOM) to global change. Although the quantity of soil DOM has been inventoried across diverse spatio-temporal scales, the underlying mechanisms accounting for variability in DOM dynamics remain unclear especially in upland ecosystems. Here, a gradient of SOM storage across 12 croplands in northeast China was used to understand links between DOM dynamics, microbial metabolism, and abiotic conditions. We assessed the composition, biodegradability, and key biodegradable components of DOM. In addition, SOM and mineral-associated organic matter (MAOM) composition, soil enzyme activities, oxygen availability, soil texture, and iron (Fe), Fe-bound organic matter, and nutrient concentrations were quantified to clarify the drivers of DOM quality (composition and biodegradability). The proportion of biodegradable DOM increased exponentially with decreasing initial DOM concentration due to larger fractions of depolymerized DOM that was rich in small-molecular phenols and proteinaceous components. Unexpectedly, the composition of DOM was decoupled from that of SOM or MAOM, but significantly related to enzymatic properties. These results indicate that microbial metabolism exhibited a dominant role in DOM generation. As DOM concentration declined, increased soil oxygen availability regulated DOM composition and enhanced its biodegradability mainly through mediating microbial metabolism and Fe oxidation. The oxygen-induced oxidation of Fe(II) to Fe(III) removed complex DOM compounds with large molecular weight. Moreover, increased oxygen availability stimulated oxidase-catalyzed depolymerization of aromatic substances, and promoted production of protein-like DOM components due to lower enzymatic C/N acquisition ratio. As global changes in temperature and moisture will have large impacts on soil oxygen availability, the role of oxygen in regulating DOM dynamics highlights the importance of integrating soil oxygen supply with microbial metabolism and Fe redox status to improve model predictions of soil carbon under climate change.
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Affiliation(s)
- Ye Li
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Zengming Chen
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
| | - Ji Chen
- Department of Agroecology, Aarhus University Centre for Circular Bioeconomy, Aarhus University, Tjele, Denmark
| | | | - Chenglong Ye
- Ecosystem Ecology Laboratory, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Nan Zhang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
- School of Applied Meteorology, Nanjing University of Information Science & Technology, Nanjing, China
| | - Yuncai Miao
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Huijie Zheng
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Junjie Li
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Weixin Ding
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
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Lyu C, Li L, Liu X, Zhao Z. Rape straw application facilitates Se and Cd mobilization in Cd-contaminated seleniferous soils by enhancing microbial iron reduction. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 310:119818. [PMID: 35870532 DOI: 10.1016/j.envpol.2022.119818] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Revised: 07/11/2022] [Accepted: 07/17/2022] [Indexed: 06/15/2023]
Abstract
Many naturally seleniferous soils are faced with Cd contamination problem, which severely limits crop cultivation in these areas. Straw returning has been widely applied in agricultural production due to its various benefits to soil physicochemical properties, soil fertility, and crops yield. However, effects of straw application on the fates of Se and Cd in Cd-contaminated seleniferous soils remain largely unclear. Therefore, the effects of straw application on the fates of Se and Cd in Cd-contaminated seleniferous soils were investigated in this study. The results showed that iron reduction driven by Clostridium and Anaeromyxbacter was responsible for the variations in Se and Cd fates in soil. Straw application respectively increased the gene copy numbers of Clostridium and Anaeromyxbacter by 19.5-56.3% and 33.6-39.8%, thus promoting iron reductive dissolution, eventually resulting in a high release amount of Se and Cd from Fe(III) (oxyhydr) oxides. Under reducing conditions, the released Cd was adsorbed by the newly formed metal sulfides or reacted with sulfides to generate CdS precipitates. Straw application decreased the soil exchangeable Se and soil exchangeable Cd concentration during flooding phase. However, straw application significantly increased Se/Cd in soil solution which had the highest bioavailability during flooding. In addition, straw application increased soil exchangeable Se concentration, but it had no significant effects on soil exchangeable Cd concentration after soil drainage. Taken together, straw application increased Se bioavailability and Cd mobility. Therefore, straw application is an effective method for improving Se bioavailability, but it is not suitable for the application to Cd-contaminated paddy soils. In the actual agricultural production, straw could be applied in seleniferous soils to improve Se bioavailability. At the same time, straw application should be cautious to avoid the release of Cd from Cd-contaminated soil.
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Affiliation(s)
- Chenhao Lyu
- Microelement Research Center, Huazhong Agricultural University, Wuhan, 430070, China; Hubei Provincial Engineering Laboratory for New-Type Fertilizer, Wuhan, 430070, China
| | - Lei Li
- Microelement Research Center, Huazhong Agricultural University, Wuhan, 430070, China; Hubei Provincial Engineering Laboratory for New-Type Fertilizer, Wuhan, 430070, China
| | - Xinwei Liu
- Microelement Research Center, Huazhong Agricultural University, Wuhan, 430070, China; Hubei Provincial Engineering Laboratory for New-Type Fertilizer, Wuhan, 430070, China
| | - Zhuqing Zhao
- Microelement Research Center, Huazhong Agricultural University, Wuhan, 430070, China; Hubei Provincial Engineering Laboratory for New-Type Fertilizer, Wuhan, 430070, China.
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10
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Hall SJ, Huang W, Napieralski SA, Roden E. Shared Microbial Taxa Respond Predictably to Cyclic Time-Varying Oxygen Limitation in Two Disparate Soils. Front Microbiol 2022; 13:866828. [PMID: 35722278 PMCID: PMC9203030 DOI: 10.3389/fmicb.2022.866828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Accepted: 05/16/2022] [Indexed: 11/27/2022] Open
Abstract
Periodic oxygen (O2) limitation in humid terrestrial soils likely influences microbial composition, but whether communities share similar responses in disparate environments remains unclear. To test if specific microbial taxa share consistent responses to anoxia in radically different soils, we incubated a rainforest Oxisol and cropland Mollisol under cyclic, time-varying anoxic/oxic cycles in the laboratory. Both soils are known to experience anoxic periods of days to weeks under field conditions; our incubation treatments consisted of anoxic periods of 0, 2, 4, 8, or 12 d followed by 4 d of oxic conditions, repeated for a total of 384 d. Taxa measured by 16S rRNA gene sequences after 48 d and 384 d of experimental treatments varied strongly with increasing anoxic period duration, and responses to anoxia often differed between soils at multiple taxonomic levels. Only 19% of the 30,356 operational taxonomic units (OTUs) occurred in both soils, and most OTUs did not respond consistently to O2 treatments. However, the OTUs present in both soils were disproportionally abundant, comprising 50% of sequences, and they often had a similar response to anoxic period duration in both soils (p < 0.0001). Overall, 67 OTUs, 36 families, 15 orders, 10 classes, and two phyla had significant and directionally consistent (positive or negative) responses to anoxic period duration in both soils. Prominent OTUs and taxonomic groups increasing with anoxic period duration in both soils included actinomycetes (Micromonosporaceae), numerous Ruminococcaceae, possible metal reducers (Anaeromyxobacter) or oxidizers (Candidatus Koribacter), methanogens (Methanomicrobia), and methanotrophs (Methylocystaceae). OTUs decreasing with anoxic duration in both soils included nitrifiers (Nitrospira) and ubiquitous unidentified Bradyrhizobiaceae and Micromonosporaceae. Even within the same genus, different OTUs occasionally showed strong positive or negative responses to anoxic duration (e.g., Dactylosporangium in the Actinobacteria), highlighting a potential for adaptation or niche partitioning in variable-O2 environments. Overall, brief anoxic periods impacted the abundance of certain microbial taxa in predictable ways, suggesting that microbial community data may partially reflect and integrate spatiotemporal differences in O2 availability within and among soils.
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Affiliation(s)
- Steven J. Hall
- Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA, United States
- *Correspondence: Steven J. Hall,
| | - Wenjuan Huang
- Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA, United States
| | | | - Eric Roden
- Department of Geoscience, University of Wisconsin-Madison, Madison, WI, United States
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Modeling Soil Organic Carbon Changes under Alternative Climatic Scenarios and Soil Properties Using DNDC Model at a Semi-Arid Mediterranean Environment. CLIMATE 2022. [DOI: 10.3390/cli10020023] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Soil organic carbon (SOC) is one of the central issues in dealing with soil fertility as well as environmental and food safety. Due to the lack of relevant data sources and methodologies, analyzing SOC dynamics has been a challenge in Morocco. During the last two decades, process-based models have been adopted as alternative and powerful tools for modeling SOC dynamics; whereas, information and knowledge on the most sensitive model inputs under different climate, and soil conditions are still very limited. For this purpose, a sensitivity analysis was conducted in the present work, using the DeNitrification-DeComposition (DNDC) model based on the data collected at a semi-arid region (Merchouch station, Morocco). The objective is to identify the most influential factors affecting the DNDC-modeled SOC dynamics in a semi-arid region across different climatic and soil conditions. The results of sensitivity analysis highlighted air temperature as the main determinant of SOC. A decrease in air temperature of 4 °C results in an almost 161 kg C ha−1 yr−1 increase in C sequestration rate. Initial SOC was also confirmed to be one of the most sensitive parameters for SOC. There was a 96 kg C ha−1 yr−1 increase in C sequestration rate under low initial SOC (0.005 kg C ha−1). In the DNDC, air temperature in climatic factors and initial SOC in variable soil properties had the largest impacts on SOC accumulation in Merchouch station. We can conclude that the sensitivity analysis conducted in this study within the DNDC can contribute to provide a scientific evidence of uncertainties of the selected inputs variables who can lead to uncertainties on the SOC in the study site. The information in this paper can be helpful for scientists and policy makers, who are dealing with regions of similar environmental conditions as Merchouch Station, by identifying alternative scenarios of soil carbon sequestration.
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12
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Crockett ETH, Vennin S, Botzas‐Coluni J, Larocque G, Bennett EM. Bright spots of carbon storage in temperate forests. J Appl Ecol 2021. [DOI: 10.1111/1365-2664.14042] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Erin T. H. Crockett
- Department of Natural Resource Sciences McGill University Montreal Quebec Canada
| | - Sydney Vennin
- Department of Natural Resource Sciences McGill University Montreal Quebec Canada
- St. Hugh's College University of Oxford Oxford UK
| | - Julie Botzas‐Coluni
- Department of Natural Resource Sciences McGill University Montreal Quebec Canada
| | - Guillaume Larocque
- Quebec Centre for Biodiversity Science, Department of Biology McGill University Montreal Quebec Canada
| | - Elena M. Bennett
- Department of Natural Resource Sciences McGill University Montreal Quebec Canada
- Bieler School of Environment McGill University Montreal Quebec Canada
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13
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Huang W, Wang K, Ye C, Hockaday WC, Wang G, Hall SJ. High carbon losses from oxygen-limited soils challenge biogeochemical theory and model assumptions. GLOBAL CHANGE BIOLOGY 2021; 27:6166-6180. [PMID: 34464997 DOI: 10.1111/gcb.15867] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Revised: 07/28/2021] [Accepted: 08/24/2021] [Indexed: 06/13/2023]
Abstract
Oxygen (O2 ) limitation contributes to persistence of large carbon (C) stocks in saturated soils. However, many soils experience spatiotemporal O2 fluctuations impacted by climate and land-use change, and O2 -mediated climate feedbacks from soil greenhouse gas emissions remain poorly constrained. Current theory and models posit that anoxia uniformly suppresses carbon (C) decomposition. Here we show that periodic anoxia may sustain or even stimulate decomposition over weeks to months in two disparate soils by increasing turnover and/or size of fast-cycling C pools relative to static oxic conditions, and by sustaining decomposition of reduced organic molecules. Cumulative C losses did not decrease consistently as cumulative O2 exposure decreased. After >1 year, soils anoxic for 75% of the time had similar C losses as the oxic control but nearly threefold greater climate impact on a CO2 -equivalent basis (20-year timescale) due to high methane (CH4 ) emission. A mechanistic model incorporating current theory closely reproduced oxic control results but systematically underestimated C losses under O2 fluctuations. Using a model-experiment integration (ModEx) approach, we found that models were improved by varying microbial maintenance respiration and the fraction of CH4 production in total C mineralization as a function of O2 availability. Consistent with thermodynamic expectations, the calibrated models predicted lower microbial C-use efficiency with increasing anoxic duration in one soil; in the other soil, dynamic organo-mineral interactions implied by our empirical data but not represented in the model may have obscured this relationship. In both soils, the updated model was better able to capture transient spikes in C mineralization that occurred following anoxic-oxic transitions, where decomposition from the fluctuating-O2 treatments greatly exceeded the control. Overall, our data-model comparison indicates that incorporating emergent biogeochemical properties of soil O2 variability will be critical for effectively modeling C-climate feedbacks in humid ecosystems.
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Affiliation(s)
- Wenjuan Huang
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA
| | - Kefeng Wang
- College of Life Science, Northwest University, Xi'an, China
| | - Chenglong Ye
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA
- Ecosystem Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | | | - Gangsheng Wang
- Institute for Water-Carbon Cycles and Carbon Neutrality, and State Key Laboratory of Water Resources and Hydropower Engineering Sciences, Wuhan University, Wuhan, China
| | - Steven J Hall
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA
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14
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Lin Y, Gross A, Silver WL. Low Redox Decreases Potential Phosphorus Limitation on Soil Biogeochemical Cycling Along a Tropical Rainfall Gradient. Ecosystems 2021. [DOI: 10.1007/s10021-021-00662-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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15
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Drivers of Organic Carbon Stocks in Different LULC History and Along Soil Depth for a 30 Years Image Time Series. REMOTE SENSING 2021. [DOI: 10.3390/rs13112223] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Soil organic carbon (SOC) stocks are a remarkable property for soil and environmental monitoring. The understanding of their dynamics in crop soils must go forward. The objective of this study was to determine the impact of temporal environmental controlling factors obtained by satellite images over the SOC stocks along soil depth, using machine learning algorithms. The work was carried out in São Paulo state (Brazil) in an area of 2577 km2. We obtained a dataset of boreholes with soil analyses from topsoil to subsoil (0–100 cm). Additionally, remote sensing covariates (30 years of land use history, vegetation indexes), soil properties (i.e., clay, sand, mineralogy), soil types (classification), geology, climate and relief information were used. All covariates were confronted with SOC stocks contents, to identify their impact. Afterwards, the abilities of the predictive models were tested by splitting soil samples into two random groups (70 for training and 30% for model testing). We observed that the mean values of SOC stocks decreased by increasing the depth in all land use and land cover (LULC) historical classes. The results indicated that the random forest with recursive features elimination (RFE) was an accurate technique for predicting SOC stocks and finding controlling factors. We also found that the soil properties (especially clay and CEC), terrain attributes, geology, bioclimatic parameters and land use history were the most critical factors in controlling the SOC stocks in all LULC history and soil depths. We concluded that random forest coupled with RFE could be a functional approach to detect, map and monitor SOC stocks using environmental and remote sensing data.
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Temporal and Agricultural Factors Influence Escherichia coli Survival in Soil and Transfer to Cucumbers. Appl Environ Microbiol 2021; 87:AEM.02418-20. [PMID: 33483305 DOI: 10.1128/aem.02418-20] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Accepted: 01/05/2021] [Indexed: 11/20/2022] Open
Abstract
Biological soil amendments of animal origin (BSAAO) increase nutrient levels in soils to support the production of fruits and vegetables. BSAAOs may introduce or extend the survival of bacterial pathogens which can be transferred to fruits and vegetables to cause foodborne illness. Escherichia coli survival over 120 days in soil plots (3 m2) covered with (mulched) or without plastic mulch (not mulched), amended with either poultry litter, composted poultry litter, heat-treated poultry pellets, or chemical fertilizer, and transfer to cucumbers in 2 years (2018 and 2019) were evaluated. Plots were inoculated with E. coli (8.5 log CFU/m2) and planted with cucumber seedlings (Supremo). The number of days needed to reduce E. coli levels by 4 log CFU (dpi4log) was determined using a sigmoidal decline model. Random forest regression and one-way analysis of variance (ANOVA; P < 0.05) identified predictors (soil properties, nutrients, and weather factors) of dpi4log of E. coli and transfer to cucumbers. The combination of year, amendment, and mulch (25.0% increase in the mean square error [IncMSE]) and year (9.75% IncMSE) were the most prominent predictors of dpi4log and transfer to cucumbers, respectively. Nitrate levels at 30 days and soil moisture at 40 days were also impactful predictors of dpi4log. Differing rainfall amounts in 2018 (24.9 in.) and 2019 (12.6 in.) affected E. coli survival in soils and transfer to cucumbers. Salmonella spp. were recovered sporadically from various plots but were not recovered from cucumbers in either year. Greater transfer of E. coli to cucumbers was also shown to be partially dependent on dpi4log of E. coli in plots containing BSAAO.IMPORTANCE Poultry litter and other biological soil amendments are commonly used fertilizers in fruit and vegetable production and can introduce enteric pathogens such as Escherichia coli O157:H7 or Salmonella previously associated with outbreaks of illness linked to contaminated produce. E. coli survival duration in soils covered with plastic mulch or uncovered and containing poultry litter or heat-treated poultry litter pellets were evaluated. Nitrate levels on day 30 and moisture content in soils on day 40 on specific days were good predictors of E. coli survival in soils; however, the combination of year, amendment, and mulch type was a better predictor. Different cumulative rainfall totals from year to year most likely affected the transfer of E. coli from soils to cucumbers and survival durations in soil. E. coli survival in soils can be extended by the addition of several poultry litter-based soil amendments commonly used in organic production of fruits and vegetables and is highly dependent on temporal variation in rainfall.
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Anthony TL, Silver WL. Mineralogical associations with soil carbon in managed wetland soils. GLOBAL CHANGE BIOLOGY 2020; 26:6555-6567. [PMID: 32780521 DOI: 10.1111/gcb.15309] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Accepted: 07/30/2020] [Indexed: 06/11/2023]
Abstract
Carbon (C)-rich wetland soils are often drained for agriculture due to their capacity to support high net primary productivity. Increased drainage is expected this century to meet the agricultural demands of a growing population. Wetland drainage can result in large soil C losses and the concentration of residual soil minerals such as iron (Fe) and aluminum (Al). In upland soils, reactive Fe and Al minerals can contribute to soil C accumulation through sorption to poorly crystalline minerals and coprecipitation of organo-metal complexes, as well as C loss via anaerobic respiration by Fe-reducing bacteria. The role of these minerals in soil C dynamics is often overlooked in managed wetland soils and may be particularly important in both drained and reflooded systems with elevated mineral concentrations. Reflooding drained soils have been proposed as a means to sequester C for climate change mitigation, yet little is known about how reactive Fe and Al minerals affect C cycling in restored wetlands. We explored the interactions among soil C and reactive Fe and Al minerals in drained and reflooded wetland soils. In reflooded soils, soil C was negatively associated with reactive Fe and reduced Fe(II), a proxy for anaerobic conditions (reactive Fe: R2 = .54-.79; Fe(II): R2 = .59-.89). In drained soils, organo-Al complexes were positively associated with soil C and Fe(II) (Al R2 = .91; Fe(II): R2 = .54-.60). Soil moisture, organo-Al, and reactive Fe explained most of the variation observed in soil C concentrations across all sites (p < .01). Reactive Fe was negatively correlated to soil C concentrations across sites, suggesting these Fe pools may drive additional C losses in drained soils and limit C sequestration with reflooding. In contrast, reactive organo-Al in drained soils facilitates C storage via aggregation and/or formation of anaerobic (micro)sites that protect residual soil C from oxidation and may at least partially offset C losses.
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Affiliation(s)
- Tyler L Anthony
- Ecosystem Science Division, Department of Environmental Science, Policy and Management, University of California, Berkeley, CA, USA
| | - Whendee L Silver
- Ecosystem Science Division, Department of Environmental Science, Policy and Management, University of California, Berkeley, CA, USA
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Abstract
Despite the recognized organic carbon (OC) sequestration potential of mangrove forests, the ongoing climate change and anthropogenic disturbances pose a great threat to these ecosystems. However, we currently lack the ability to mechanically understand and predict the consequences of such impacts, primarily because mechanisms underlying OC stabilization in these ecosystems remain elusive. Research into OC stabilization has focused on terrestrial soils and marine sediments for decades, overlooking the vegetated coastal ecosystems including mangroves. In terrestrial soils and marine sediments, it is widely accepted that OC stabilization is the integrated consequence of OM’s inherent recalcitrance, physical protection, and interactions with minerals and metals. However, related discussion is rarely done in mangrove soils, and recalcitrance of roots and high net ecosystem production (high primary production and low heterotrophic respiration) have been considered as a primary OC sequestration mechanism in mangrove peat and mineral soils, respectively. This review presents the available information on the mechanisms underlying OC stabilization in mangrove soils and highlights research questions that warrant further investigation. Primary OC stabilization mechanisms differ between mangrove peat and mineral soils. In mangrove mineral soils, physico-chemical stabilization processes are important, yet grossly understudied OC stabilization mechanisms. In mangrove peat, recalcitrance of mangrove roots and the inhibition of phenoloxidase under the anoxic condition may be the primary OC stabilization mechanisms. Salinity-induced OC immobilization likely plays a role in both type of soils. Finally, this review argues that belowground production and allochthonous inputs in mangrove forests are likely underestimated. More studies are needed to constrain C budgets to explain the enigma that mangrove OC keeps accumulating despite much higher decomposition (especially by large lateral exports) than previously considered.
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