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Chen DY, Li BZ, Xu WB, Zhang YM, Li BW, Cheng YX, Xiao Y, Lin CY, Dong WR, Shu MA. The first identification of three AdIRAK2 genes from an evolutionarily important amphibian Andrias davidianus and their involvement in NF-κB activation and inflammatory responses. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 2023; 139:104585. [PMID: 36368593 DOI: 10.1016/j.dci.2022.104585] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2022] [Revised: 10/24/2022] [Accepted: 11/02/2022] [Indexed: 06/16/2023]
Abstract
Interleukin-1 receptor associated kinases (IRAK) is the most important downstream kinases of TLRs/IL-1R signaling pathway for signal transduction and activation of inflammatory response against pathogen infections. However, the molecular identification and function characterization of IRAK2 homologs in lower vertebrate remains obscure. In this study, three IRAK2 genes (AdIRAK2a, AdIRAKb and AdIRAK2c) and their respective transcripts were identified from the Chinese giant salamander Andrias davidianus. This is the first evidence that three different IRAK2 genes exist in an ancient amphibian species, which has never been reported in other vertebrates. The complete open reading frames (ORFs) of AdIRAK2a, AdIRAK2b and AdIRAK2c were 2112 bp, 1917 bp and 816 bp encoding deduced proteins of 703 amino acids (aa), 628 aa and 271 aa, respectively. All three AdIRAK2 proteins contained two predicted conserved functional domains, including a death domain (DD) and a serine/threonine protein kinases domain (KD). Phylogenetic analysis showed that the three AdIRAK2s clustered together with other known IRAK2 of vertebrates. The three AdIRAK2s were ubiquitously expressed in all tested tissues with a similar tissues distribution pattern. After challenge of Aeromonas hydrophila (A. hydrophila), Staphylococcus aureus (S.aureus), giant salamander iridovirus (GSIV, belonging to the genus Ranavirus in the family Iridoviridae) and polyinosinic:polycytidylic acid (poly(I:C)), the expression levels of all AdIRAK2s in blood were significantly altered, however, they exhibited distinct response patterns. Moreover, the results of over-expression and RNAi of AdIRAK2s implied the involvement of AdIRAK2s in triggering NF-κB-mediated signaling pathways and inflammatory responses. This study might provide a better understanding of the presence and immune regulation function of IRAK2 in amphibians and even in vertebrates.
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Affiliation(s)
- Da-Yong Chen
- College of Animal Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Bang-Ze Li
- College of Animal Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Wen-Bin Xu
- College of Animal Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Yan-Mei Zhang
- College of Animal Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Bing-Wu Li
- College of Animal Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Yuan-Xin Cheng
- College of Animal Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Yi Xiao
- College of Animal Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Chen-Yang Lin
- College of Animal Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Wei-Ren Dong
- College of Animal Sciences, Zhejiang University, Hangzhou, 310058, China.
| | - Miao-An Shu
- College of Animal Sciences, Zhejiang University, Hangzhou, 310058, China.
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Bižienė R, Morkūnienė K, Mišeikienė R, Pečiulaitienė N, Makštutienė N, Šlyžius E. Effects of single nucleotide polymorphism markers on the carcass and fattening traits in different pig populations. JOURNAL OF ANIMAL AND FEED SCIENCES 2018. [DOI: 10.22358/jafs/95020/2018] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Ardiyanti A, Abe T, Tameoka N, Kobayashi E, Shoji N, Ohtani Y, Suzuki K, Roh SG, Katoh K. Effects of growth hormone gene polymorphism on lipogenic gene expression levels in diaphragm tissues of Japanese black heifers. ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES 2014; 25:1055-62. [PMID: 25049663 PMCID: PMC4093005 DOI: 10.5713/ajas.2012.12029] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/13/2012] [Revised: 05/01/2012] [Accepted: 04/04/2012] [Indexed: 11/27/2022]
Abstract
Two SNPs, i.e. L127V and T172M, of bovine growth hormone (GH) causing the presence of GH gene haplotypes A, B, and C was previously shown to alter intramuscular fatty acid (FA) composition in Japanese Black (JB) heifers. To determine the SNP effect on somatotropic hormone concentration and lipogenesis, we measured plasma GH, insulin, and insulin-like growth factor-1 (IGF-1) concentrations. We also measured mRNA levels of fatty acid synthase (FASN), stearoyl-coA desaturase (SCD), and sterol regulatory element binding proteins-1 (SREBP-1) and FA composition in diaphragm tissues. Heifers with genotype CC had the lowest plasma insulin concentration and FASN and SCD mRNA levels among genotypes. FASN mRNA levels in haplotype A tended to positively correlate with saturated FA (SFA) content and negatively correlated with C18:2 and unsaturated FA (USFA) contents. SCD mRNA levels in haplotype A positively correlated with monounsaturated FA (MUFA) contents and negatively correlated with C18:0 content. They also tended to positively correlate with C16:1, C18:1, and USFA contents and USFA/SFA ratio and negatively correlate with SFA content. Taken together, GH gene polymorphism affects the lipogenic genes expression levels and their relationships with fatty acid compositions in diaphragm tissues of JB heifers at 31 months of age.
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Affiliation(s)
| | - Tsuyoshi Abe
- National Livestock Breeding Center, Fukushima 961-8511, Japan
| | - Nanae Tameoka
- National Livestock Breeding Center, Fukushima 961-8511, Japan
| | - Eiji Kobayashi
- National Livestock Breeding Center, Fukushima 961-8511, Japan
| | - Noriaki Shoji
- Yamagata General Agricultural Research Center, Shinjo 996-0041, Japan
| | | | - Keiichi Suzuki
- Department of Animal Breeding and Genetics, Graduate School of Agricultural Science, Tohoku University, Sendai 981-8555, Japan
| | - Sang-Gun Roh
- National Livestock Breeding Center, Fukushima 961-8511, Japan
| | - Kazuo Katoh
- National Livestock Breeding Center, Fukushima 961-8511, Japan
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Sugita H, Ardiyanti A, Yokota S, Yonekura S, Hirayama T, Shoji N, Yamauchi E, Suzuki K, Katoh K, Roh SG. Effect of single nucleotide polymorphisms in GH gene promoter region on carcass traits and intramuscular fatty acid compositions in Japanese Black cattle. Livest Sci 2014. [DOI: 10.1016/j.livsci.2014.04.026] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Tachi N, Tanaka S, Ardiyanti A, Katoh K, Sato S. Bovine growth hormone gene polymorphism affects stress response in
J
apanese
B
lack cattle. Anim Sci J 2014; 85:722-8. [DOI: 10.1111/asj.12212] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2013] [Accepted: 12/13/2013] [Indexed: 11/27/2022]
Affiliation(s)
- Noriko Tachi
- Graduate School of Agricultural ScienceTohoku University Osaki Japan
| | - Sigefumi Tanaka
- Graduate School of Agricultural ScienceTohoku University Osaki Japan
| | - Astrid Ardiyanti
- Graduate School of Agricultural ScienceTohoku University Osaki Japan
| | - Kazuo Katoh
- Graduate School of Agricultural ScienceTohoku University Osaki Japan
| | - Shusuke Sato
- Graduate School of Agricultural ScienceTohoku University Osaki Japan
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Bahrami A, Ardiyanti A, Tonosaki K, Suzuki K, Tanida N, Hirayama T, Roh SG, Nishio T, Katoh K. Haplotype C ofgrowth hormone(GH) gene in Japanese Black cattle: Structure of GH protein and a novel method for detection of the gene. Anim Sci J 2013; 84:802-4. [DOI: 10.1111/asj.12132] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2013] [Accepted: 07/31/2013] [Indexed: 11/29/2022]
Affiliation(s)
- Abolfazl Bahrami
- Department of Animal Science; University of Tehran; Tehran Islamic Republic of Iran
| | - Astrid Ardiyanti
- Department of Animal Physiology; Graduate School of Agricultural Science; Tohoku University; Sendai Japan
| | - Kaoru Tonosaki
- Department of Plant Breeding and Genetics; Graduate School of Agricultural Science; Tohoku University; Sendai Japan
| | - Keiichi Suzuki
- Department of Animal Breeding and Genetics; Graduate School of Agricultural Science; Tohoku University; Sendai Japan
| | - Nanako Tanida
- Department of Animal Physiology; Graduate School of Agricultural Science; Tohoku University; Sendai Japan
| | - Takuji Hirayama
- Faculty of Agriculture; University of Ryukyus; Nishihara Japan
| | - Sang-Gun Roh
- Department of Animal Physiology; Graduate School of Agricultural Science; Tohoku University; Sendai Japan
| | - Takeshi Nishio
- Department of Plant Breeding and Genetics; Graduate School of Agricultural Science; Tohoku University; Sendai Japan
| | - Kazuo Katoh
- Department of Animal Physiology; Graduate School of Agricultural Science; Tohoku University; Sendai Japan
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Williamson JF, Steele EJ, Lester S, Kalai O, Millman JA, Wolrige L, Bayard D, McLure C, Dawkins RL. Genomic evolution in domestic cattle: ancestral haplotypes and healthy beef. Genomics 2011; 97:304-12. [PMID: 21338665 DOI: 10.1016/j.ygeno.2011.02.006] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2010] [Revised: 02/07/2011] [Accepted: 02/09/2011] [Indexed: 11/25/2022]
Abstract
We have identified numerous Ancestral Haplotypes encoding a 14-Mb region of Bota C19. Three are frequent in Simmental, Angus and Wagyu and have been conserved since common progenitor populations. Others are more relevant to the differences between these 3 breeds including fat content and distribution in muscle. SREBF1 and Growth Hormone, which have been implicated in the production of healthy beef, are included within these haplotypes. However, we conclude that alleles at these 2 loci are less important than other sequences within the haplotypes. Identification of breeds and hybrids is improved by using haplotypes rather than individual alleles.
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Affiliation(s)
- Joseph F Williamson
- C.Y. O'Connor ERADE Village Foundation, Canning Vale, Western Australia, Australia
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Matsuhashi T, Maruyama S, Uemoto Y, Kobayashi N, Mannen H, Abe T, Sakaguchi S, Kobayashi E. Effects of bovine fatty acid synthase, stearoyl-coenzyme A desaturase, sterol regulatory element-binding protein 1, and growth hormone gene polymorphisms on fatty acid composition and carcass traits in Japanese Black cattle1. J Anim Sci 2011; 89:12-22. [DOI: 10.2527/jas.2010-3121] [Citation(s) in RCA: 96] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Ardiyanti A, Oki Y, Suda Y, Suzuki K, Chikuni K, Obara Y, Katoh K. Effects of GH gene polymorphism and sex on carcass traits and fatty acid compositions in Japanese Black cattle. Anim Sci J 2010; 80:62-9. [PMID: 20163470 DOI: 10.1111/j.1740-0929.2008.00594.x] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
To investigate the effects of bovine growth hormone (bGH) gene polymorphism on carcass traits and fatty acid compositions in Japanese Black cattle caused by nucleotide substitution of CTG (allele A)/GTG (allele B) at codon 127 and of ACG (allele A and B)/ATG (allele C) at codon 172 of bGH, GH genotypes of 135 cattle were determined using allele specific-multiplex polymerase chain reaction (PCR). Allele A gave greater rib thickness and lower melting point of fat (MP) while allele B gave higher C18:1% (P < 0.05). Allele C gave higher C18:1, monounsaturated fatty acid (MUFA), unsaturated fatty acid (USFA) percentages (P < 0.05). It also gave lower saturated fatty acid (SFA) percentages, higher MUFA/SFA and USFA/SFA ratios, and lower MP (P < 0.05). Interactions of sex and GH alleles were analyzed. In heifers, allele A gave higher carcass weight, daily carcass gain, rib eye area, rib thickness, subcutaneous fat thickness, and BMS while allele B gave greater rib eye area and rib thickness (P < 0.05). Allele C gave higher C18:1 (P < 0.01), MUFA (P < 0.01), USFA percentages (P < 0.05) and MUFA/SFA and USFA/SFA ratios (P < 0.01), and lower C16:0 and SFA percentages (P < 0.05) and MP (P < 0.01). GH gene polymorphism affected carcass traits and fatty acid compositions although the effects were more pronounced in heifers.
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Affiliation(s)
- Astrid Ardiyanti
- Department of Animal Physiology, Graduate School of Agricultural Science, Tohoku University, Aoba, Sendai, Japan.
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Ardiyanti A, Abe F, Kobashikawa H, Hirayama T, Sugino T, Suzuki K, Katoh K. Plasma hormone and metabolite concentrations involved in the somatotropic axis of Japanese Black heifers in association with growth hormone gene polymorphism. Domest Anim Endocrinol 2009; 37:243-9. [PMID: 19747793 DOI: 10.1016/j.domaniend.2009.07.002] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/24/2009] [Revised: 07/14/2009] [Accepted: 07/15/2009] [Indexed: 10/20/2022]
Abstract
Bovine growth hormone (bGH) gene polymorphism of leucine (Leu)-threonine (Thr) (allele A), valine (Val)-Thr (allele B), and Val-methionine (Met) (allele C) at codons 127 and 172 was shown to relate with carcass trait variations in Japanese Black cattle. In this study, 10-mo-old Japanese Black heifers with growth hormone (GH) genotypes AA, AB, BB, AC, BC, and CC (N=141) were compared for basal GH, insulin-like growth factor-1 (IGF-1), insulin, ghrelin, glucose, and nonesterified fatty acid (NEFA) concentrations. Growth hormone release was also measured as response to growth hormone-releasing hormone (GHRH) (0.4 microg/kg body weight [BW]) using 18 heifers with GH genotypes AA, BB, and CC (n=6 for each group). The genotype AA heifers showed the greatest BW among genotypes (P<0.05). Genotype AC, BC, and CC heifers showed greater GH concentrations than genotype AA, AB, or BB heifers, in which genotype CC heifers had the highest concentrations (P<0.05). However, IGF-1 concentrations did not significantly differ. The genotype AA and BB heifers had a greater GH release at 60 min following GHRH injection than did the genotype CC heifers. The area under the curve (AUC; P<0.07) and incremental area (IA; P<0.08) of GH responses to the GHRH challenge tended to be the highest in the genotype AA heifers and the lowest in the genotype CC heifers. In conclusion, GH gene polymorphism altered GH, which may have contributed to differences in BW and carcass traits among genotypes.
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Affiliation(s)
- A Ardiyanti
- Department of Animal Physiology, Graduate School of Agricultural Science, Tohoku University, Tsutsumidori, Aoba, Sendai, Japan.
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Tatsuda K, Oka A, Iwamoto E, Kuroda Y, Takeshita H, Kataoka H, Kouno S. Relationship of the bovine growth hormone gene to carcass traits in Japanese black cattle. J Anim Breed Genet 2008; 125:45-9. [PMID: 18254825 DOI: 10.1111/j.1439-0388.2007.00688.x] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The bovine growth hormone gene (bGH) possesses three haplotypes, A, B and C, that differ by amino acid mutations at positions 127 and 172 in the fifth exon: (leucine 127, threonine 172), (valine 127, threonine 172) and (valine 127, methionine 172) respectively. The correlation between meat quality or carcass weight and these haplotypes was investigated in Japanese black cattle. Altogether, 940 bGH haplotypes were compared with respect to six carcass traits: carcass weight, longissimus muscle area, rib thickness, subcutaneous fat thickness, beef marbling score and beef colour. The frequency of the B haplotype was higher (0.421) than that of A (0.269) and C (0.311). High carcass weight and low beef marbling were associated with haplotype A (p < 0.05 and p < 0.01 respectively), whereas beef marbling was increased by haplotype C (p < 0.05). Estimated regression coefficient of the A haplotype substitution effect for carcass weight and beef marbling score were 5.55 (13.1% of the phenotypic SD) and -0.31 (17.0%) respectively. That of the C haplotype for beef marbling score was 0.20 (11.0%). The other traits showed no relationship to the haplotypes examined. The results of this investigation suggest that information pertaining to bGH polymorphisms in Japanese black cattle could be used to improve the selection of meat traits.
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Affiliation(s)
- K Tatsuda
- Hyogo Prefectural Institute of Agriculture, Forestry and Fisheries, Kasai, Japan.
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Katoh K, Kouno S, Okazaki A, Suzuki K, Obara Y. Interaction of GH polymorphism with body weight and endocrine functions in Japanese black calves. Domest Anim Endocrinol 2008; 34:25-30. [PMID: 17118619 DOI: 10.1016/j.domaniend.2006.10.003] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/27/2006] [Revised: 09/27/2006] [Accepted: 10/02/2006] [Indexed: 11/20/2022]
Abstract
We assessed the interaction of GH gene polymorphisms (AA, AB and BB genotypes) with body weight and measures of endocrine function in Japanese black calves at 10 months of age. The average body weight for the BB genotype (281+/-5 kg) was significantly lower (P=0.0017, ANOVA) than those for the AA (324+/-9 kg) and AB (317+/-7 kg) genotypes. Plasma concentrations of insulin and IGF-I were greater for the AA genotype than for the AB genotype, and AB and BB genotypes, respectively. There were significant differences in the triglyceride and cholesterol concentrations among the GH genotypes. The area under the basal GH concentration was significantly greater (P=0.0314) for the AA genotype than for the two other genotypes. The incremental area over the basal GH concentrations in response to intravenous GHRH injection (0.4 microg/kg BW) was significantly smaller (P=0.0005) for the BB genotype than for the two other genotypes. In addition, linear regression analysis between GH incremental area induced by GHRH and body weight demonstrated that there was a positive linear correlation (r=0.6496, P<0.002) for incremental areas less than 600 ng min/ml, but a negative correlation (r=0.6473, P<0.05) for incremental areas over 600 ng min/ml. These findings indicate that the GH genotypes of the animals could be associated with difference in the GH response in Japanese black cattle at 10 months of age. We also observed a relationship between genotype and animal performances, but other studies on more animals in different conditions must be realized to make a definite conclusion.
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Affiliation(s)
- K Katoh
- Department of Animal Physiology, Graduate School of Agricultural Science, Tohoku University, Aoba-ku, Sendai 981-8555, Japan.
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OKA A, IWAKI F, IWAMOTO E, TATSUDA K. Effects of growth rate during the early fattening period on growth, carcass characteristics and circulating hormones in the different growth hormone genotypes of Japanese black steers. Anim Sci J 2007. [DOI: 10.1111/j.1740-0929.2007.00418.x] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Meade KG, Hill EW, Buckley F, MacHugh DE. Convenient detection of single nucleotide polymorphism haplotypes in the bovine growth hormone gene using amplification-created restriction sites. Anim Genet 2005; 36:175-7. [PMID: 15771738 DOI: 10.1111/j.1365-2052.2005.01249.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- K G Meade
- Department of Animal Science and Conway Institute of Biomolecular and Biomedical Research, Faculty of Agri-Food and the Environment, University College Dublin, Belfield, Dublin 4, Ireland
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Di Stasio L, Sartore S, Albera A. Lack of association of GH1 and POU1F1 gene variants with meat production traits in Piemontese cattle. Anim Genet 2002; 33:61-4. [PMID: 11849139 DOI: 10.1046/j.1365-2052.2002.00811.x] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Growth hormone (GH) and the Pit-1 transcription factor have been shown to be involved in the physiological mechanisms related to growth. The present study was carried out to investigate the possible association of the polymorphism at GH1 and POU1F1 loci with meat production traits in Piemontese cattle. Fourteen traits were considered, expressing growth (weight at 5, 7 and 11 months, daily gain), size [withers height (WH), trunk length (TL), chest girth (CG) at 12 months] and meat conformation [withers width (WW), shoulder muscularity (SM), loin width (LW), loin thickness (LT), thigh muscularity (TM), thigh profile (TP), bone thinness (BT)]. Data were analysed with a mixed model procedure to estimate the allele substitution and the dominance effects. The results did not provide evidence of association of GH1 and POU1F1 polymorphisms with the evaluated traits.
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Affiliation(s)
- L Di Stasio
- Dipartimento di Scienze Zootecniche, Facoltà di Agraria, 10095 Grugliasco, Italy.
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