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Nowlan JP, Sies AN, Britney SR, Cameron ADS, Siah A, Lumsden JS, Russell S. Genomics of Tenacibaculum Species in British Columbia, Canada. Pathogens 2023; 12:pathogens12010101. [PMID: 36678448 PMCID: PMC9864904 DOI: 10.3390/pathogens12010101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Revised: 12/30/2022] [Accepted: 01/04/2023] [Indexed: 01/11/2023] Open
Abstract
Tenacibaculum is a genus of Gram-negative filamentous bacteria with a cosmopolitan distribution. The research describing Tenacibaculum genomes stems primarily from Norway and Chile due to their impacts on salmon aquaculture. Canadian salmon aquaculture also experiences mortality events related to the presence of Tenacibaculum spp., yet no Canadian Tenacibaculum genomes are publicly available. Ribosomal DNA sequencing of 16S and four species-specific 16S quantitative-PCR assays were used to select isolates cultured from Atlantic salmon with mouthrot in British Columbia (BC), Canada. Ten isolates representing four known and two unknown species of Tenacibaculum were selected for shotgun whole genome sequencing using the Oxford Nanopore's MinION platform. The genome assemblies achieved closed circular chromosomes for seven isolates and long contigs for the remaining three isolates. Average nucleotide identity analysis identified T. ovolyticum, T. maritimum, T. dicentrarchi, two genomovars of T. finnmarkense, and two proposed novel species T. pacificus sp. nov. type strain 18-2881-AT and T. retecalamus sp. nov. type strain 18-3228-7BT. Annotation in most of the isolates predicted putative virulence and antimicrobial resistance genes, most-notably toxins (i.e., hemolysins), type-IX secretion systems, and oxytetracycline resistance. Comparative analysis with the T. maritimum type-strain predicted additional toxins and numerous C-terminal secretion proteins, including an M12B family metalloprotease in the T. maritimum isolates from BC. The genomic prediction of virulence-associated genes provides important targets for studies of mouthrot disease, and the annotation of the antimicrobial resistance genes provides targets for surveillance and diagnosis in veterinary medicine.
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Affiliation(s)
- Joseph P. Nowlan
- Center for Innovation in Fish Health, Vancouver Island University, Nanaimo, BC V9R 5S5, Canada
- Department of Pathobiology, University of Guelph, Guelph, ON N1G 2W1, Canada
- Correspondence:
| | - Ashton N. Sies
- Department of Biology, University of Regina, Regina, SK S4S 0A2, Canada
- Institute for Microbial Systems and Society, Faculty of Science, University of Regina, Regina, SK S4S 0A2, Canada
| | - Scott R. Britney
- Center for Innovation in Fish Health, Vancouver Island University, Nanaimo, BC V9R 5S5, Canada
- Department of Pathobiology, University of Guelph, Guelph, ON N1G 2W1, Canada
| | - Andrew D. S. Cameron
- Department of Biology, University of Regina, Regina, SK S4S 0A2, Canada
- Institute for Microbial Systems and Society, Faculty of Science, University of Regina, Regina, SK S4S 0A2, Canada
| | - Ahmed Siah
- BC Center for Aquatic Health Sciences, Campbell River, BC V9W 2C2, Canada
| | - John S. Lumsden
- Department of Pathobiology, University of Guelph, Guelph, ON N1G 2W1, Canada
| | - Spencer Russell
- Center for Innovation in Fish Health, Vancouver Island University, Nanaimo, BC V9R 5S5, Canada
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Mabrok M, Algammal AM, Sivaramasamy E, Hetta HF, Atwah B, Alghamdi S, Fawzy A, Avendaño-Herrera R, Rodkhum C. Tenacibaculosis caused by Tenacibaculum maritimum: Updated knowledge of this marine bacterial fish pathogen. Front Cell Infect Microbiol 2023; 12:1068000. [PMID: 36683696 PMCID: PMC9853564 DOI: 10.3389/fcimb.2022.1068000] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Accepted: 11/28/2022] [Indexed: 01/07/2023] Open
Abstract
Tenacibaculosis occurs due to the marine bacterial pathogen Tenacibaculum maritimum. This ulcerative disease causes high mortalities for various marine fish species worldwide. Several external clinical signs can arise, including mouth erosion, epidermal ulcers, fin necrosis, and tail rot. Research in the last 15 years has advanced knowledge on the traits and pathogenesis mechanisms of T. maritimum. Consequently, significant progress has been made in defining the complex host-pathogen relationship. Nevertheless, tenacibaculosis pathogenesis is not yet fully understood. Continued research is urgently needed, as demonstrated by recent reports on the re-emerging nature of tenacibaculosis in salmon farms globally. Current sanitary conditions compromise the development of effective alternatives to antibiotics, in addition to hindering potential preventive measures against tenacibaculosis. The present review compiles knowledge of T. maritimum reported after the 2006 review by Avendaño-Herrera and colleagues. Essential aspects are emphasized, including antigenic and genomic characterizations and molecular diagnostic procedures. Further summarized are the epidemiological foundations of the T. maritimum population structure and elucidations as to the virulence mechanisms of pathogenic isolates, as found using biological, microbiological, and genomic techniques. This comprehensive source of reference will undoubtable serve in tenacibaculosis prevention and control within the marine fish farming industry. Lastly, knowledge gaps and valuable research areas are indicated as potential guidance for future studies.
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Affiliation(s)
- Mahmoud Mabrok
- Department of Fish Diseases and Management, Faculty of Veterinary Medicine, Suez Canal University, Ismailia, Egypt,Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand,Center of Excellence in Fish Infectious Diseases (CE FID), Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand
| | - Abdelazeem M. Algammal
- Department of Bacteriology, Mycology and Immunology, Faculty of Veterinary Medicine, Suez Canal University, Ismailia, Egypt
| | - Elayaraja Sivaramasamy
- Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand,Center of Excellence in Fish Infectious Diseases (CE FID), Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand
| | - Helal F. Hetta
- Department of Medical Microbiology and Immunology, Faculty of Medicine, Assuit University, Assuit, Egypt
| | - Banan Atwah
- Laboratory Medicine Department, Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Saudi Arabia
| | - Saad Alghamdi
- Laboratory Medicine Department, Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Saudi Arabia
| | - Aml Fawzy
- Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand,Directorate of Veterinary Medicine, Ismailia, Egypt
| | - Ruben Avendaño-Herrera
- Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Facultad de Ciencias Biológicas, Universidad Andrés Bello, Viña del Mar, Chile,Interdisciplinary Center for Aquaculture Research (INCAR), Viña del Mar, Chile,Centro de Investigación Marina Quintay (CIMARQ), Universidad Andrés Bello, Quintay, Chile,*Correspondence: Channarong Rodkhum, ; Ruben Avendaño-Herrera, ;
| | - Channarong Rodkhum
- Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand,Center of Excellence in Fish Infectious Diseases (CE FID), Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand,*Correspondence: Channarong Rodkhum, ; Ruben Avendaño-Herrera, ;
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Liu H, Xu X, Bai X, Li Y, Wang J, Lv A, Luo Z. Development of a TaqMan real-time quantitative PCR assay to detect Metschnikowia bicuspidata in Chinese mitten crab Eriocheir sinensis. DISEASES OF AQUATIC ORGANISMS 2022; 152:17-25. [PMID: 36394137 DOI: 10.3354/dao03704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Milky disease of Chinese mitten crab Eriocheir sinensis caused by Metschnikowia bicuspidata is a novel disease with high mortality. No effective treatment is currently available, but a rapid, accurate detection method is required for the prevention and control of the disease. In this study, the genome-sequencing results of M. bicuspidata and similar species were used for comparative genomic analysis for genes specific to M. bicuspidata. A quantitative PCR (qPCR) detection method for M. bicuspidata was then established using the specific primers and probes designed according to the sequence of a hypothetical protein gene specific to M. bicuspidata. The assay was found to have a high degree of repeatability and reproducibility, with a linear dynamic range (R2 = 0.998) extending over 9 log10 dilutions and a high efficiency (100.7%). Furthermore, the method showed high sensitivity, being able to detect at least 11.3 copies μl-1 of recombinant plasmid, and strong specificity, without any cross-reaction with any of the 9 species of yeast that are closely related to M. bicuspidata or any of 16 species of pathogenic bacteria commonly observed in aquatic animals. The established method was used to examine 138 apparently healthy crabs collected from 22 farms, with 21 samples (15.2%) found to be M. bicuspidata-positive. Thus, the developed qPCR assay is a specific, sensitive, stable, and rapid diagnostic method for the detection and quantification of M. bicuspidata DNA from E. sinensis tissues.
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Affiliation(s)
- Houfu Liu
- Tianjin Key Lab of Aqua-Ecology and Aquaculture, College of Fisheries, Tianjin Agricultural University, Tianjin 300384, PR China
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Fernandez-Senac C, Monaghan SJ, Mascolo D, Baily JL, Betancor M, Chalmers L, Paladini G, Adams A, Fridman S, Bron JE. Investigating the impacts of H 2O 2 treatment on gills of healthy Atlantic salmon reveals potential changes to mucus production with implications on immune activity. FISH & SHELLFISH IMMUNOLOGY 2022; 128:74-81. [PMID: 35843527 DOI: 10.1016/j.fsi.2022.06.063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Revised: 06/21/2022] [Accepted: 06/27/2022] [Indexed: 06/15/2023]
Abstract
Current treatment strategies for relevant infectious diseases in Atlantic salmon (Salmo salar L.) include the use of low salinity or freshwater bathing. However, often availability is restricted, and hydrogen peroxide (H2O2) is used as an alternative. The potential impacts of H2O2 on fish mucosal tissues, especially the gills therefore need to be considered. In this study the mucosal and immunological effects of H2O2 treatment on the gills of healthy Atlantic salmon were examined by gene expression (qPCR) and immunohistochemistry (IHC) investigating T-cell, B-cell, and mucin activity. Healthy fish were treated with H2O2 and sampled at different times: 4 h, 24 h and 14 days post-H2O2 treatment (dpt) (total n = 18) to investigate the effect of holding time and H2O2 treatment. Treatment with H2O2 resulted in up-regulation of markers for T-cell activity and anti-inflammatory response and down-regulation of mucin expression in the gills at 14 dpt compared to fish sampled prior to treatment (0h; n = 5 fish). These findings were supported by IHC analysis, which despite being highly variable between samples, showed an increase in the number of CD3+ T cells at 14 dpt in 50% of treated fish compared to pre-treatment fish. The results from this study suggest that H2O2 treatment does not immune compromise healthy Atlantic salmon after 14 dpt (i.e., post-recovery) but modulates gill immune activity and disrupts the mucus covering of the gills. However, further studies are required to determine whether the effects observed are related to H2O2 treatment in isolation or other variables such as holding time or environmental factors.
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Affiliation(s)
| | - Sean J Monaghan
- Institute of Aquaculture, University of Stirling, Stirling, FK9 4LA, UK.
| | - Dario Mascolo
- Institute of Aquaculture, University of Stirling, Stirling, FK9 4LA, UK.
| | - Johanna L Baily
- Institute of Aquaculture, University of Stirling, Stirling, FK9 4LA, UK.
| | - Monica Betancor
- Institute of Aquaculture, University of Stirling, Stirling, FK9 4LA, UK.
| | - Lynn Chalmers
- Institute of Aquaculture, University of Stirling, Stirling, FK9 4LA, UK.
| | - Giuseppe Paladini
- Institute of Aquaculture, University of Stirling, Stirling, FK9 4LA, UK.
| | - Alexandra Adams
- Institute of Aquaculture, University of Stirling, Stirling, FK9 4LA, UK.
| | - Sophie Fridman
- Institute of Aquaculture, University of Stirling, Stirling, FK9 4LA, UK.
| | - James E Bron
- Institute of Aquaculture, University of Stirling, Stirling, FK9 4LA, UK.
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von Ammon U, Averink T, Kumanan K, Brosnahan CL, Pochon X, Hutson KS, Symonds JE. An Efficient Tetraplex Surveillance Tool for Salmonid Pathogens. Front Microbiol 2022; 13:885585. [PMID: 35531301 PMCID: PMC9069008 DOI: 10.3389/fmicb.2022.885585] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Accepted: 04/01/2022] [Indexed: 12/22/2022] Open
Abstract
Fish disease surveillance methods can be complicated and time consuming, which limits their value for timely intervention strategies on aquaculture farms. Novel molecular-based assays using droplet digital Polymerase Chain Reaction (ddPCR) can produce immediate results and enable high sample throughput with the ability to multiplex several targets using different fluorescent dyes. A ddPCR tetraplex assay was developed for priority salmon diseases for farmers in New Zealand including New Zealand Rickettsia-like organism 1 (NZ-RLO1), NZ-RLO2, Tenacibaculum maritimum, and Yersinia ruckeri. The limit of detection in singleplex and tetraplex assays was reached for most targets at 10−9 ng/μl with, respectively, NZ-RLO1 = 0.931 and 0.14 copies/μl, NZ-RLO2 = 0.162 and 0.21 copies/μl, T. maritimum = 0.345 and 0.93 copies/μl, while the limit of detection for Y. ruckeri was 10−8 with 1.0 copies/μl and 0.7 copies/μl. While specificity of primers was demonstrated in previous studies, we detected cross-reactivity of T. maritimum with some strains of Tenacibaculum dicentrarchi and Y. ruckeri with Serratia liquefaciens, respectively. The tetraplex assay was applied as part of a commercial fish disease surveillance program in New Zealand for 1 year to demonstrate the applicability of tetraplex tools for the salmonid aquaculture industry.
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Affiliation(s)
- Ulla von Ammon
- Aquaculture & Marine Biosecurity, Cawthron Institute, Nelson, New Zealand
- *Correspondence: Ulla von Ammon,
| | - Tessa Averink
- Aquaculture & Marine Biosecurity, Cawthron Institute, Nelson, New Zealand
| | - Karthiga Kumanan
- Aquaculture & Marine Biosecurity, Cawthron Institute, Nelson, New Zealand
- College of Science and Engineering, James Cook University, Townsville, QLD, Australia
| | - Cara L. Brosnahan
- Institute of Marine Science, University of Auckland, Warkworth, New Zealand
| | - Xavier Pochon
- Aquaculture & Marine Biosecurity, Cawthron Institute, Nelson, New Zealand
- Animal Health Laboratory, Ministry for Primary Industries, Upper Hutt, New Zealand
| | - Kate S. Hutson
- Aquaculture & Marine Biosecurity, Cawthron Institute, Nelson, New Zealand
- College of Science and Engineering, James Cook University, Townsville, QLD, Australia
| | - Jane E. Symonds
- Aquaculture & Marine Biosecurity, Cawthron Institute, Nelson, New Zealand
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First Isolation of Virulent Tenacibaculum maritimum Isolates from Diseased Orbicular Batfish (Platax orbicularis) Farmed in Tahiti Island. Pathogens 2022; 11:pathogens11020131. [PMID: 35215075 PMCID: PMC8877024 DOI: 10.3390/pathogens11020131] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Revised: 01/19/2022] [Accepted: 01/19/2022] [Indexed: 02/04/2023] Open
Abstract
The orbicular batfish (Platax orbicularis), also called ‘Paraha peue’ in Tahitian, is the most important marine fish species reared in French Polynesia. Sudden and widespread outbreaks of severe ‘white-patch disease’ have occurred since 2011 in batfish farms one to three weeks after the transfer of juveniles from bio-secured hatcheries to lagoon cages. With cumulative mortality ranging from 20 to 90%, the sustainability of aquaculture of this species is severely threatened. In this study, we report for the first time the isolation from diseased batfish of several isolates belonging to the species Tenacibaculum maritimum, a major pathogen of many marine fish species. Histopathological analysis, an experimental bath challenge and a field monitoring study showed that T. maritimum is associated with ‘white-patch disease’. Moreover, molecular and serological analyses performed on representative isolates revealed some degree of genetic diversity among the isolates, a finding of primary importance for epidemiological studies and the development of management and control strategies such as vaccination.
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Nowlan JP, Britney SR, Lumsden JS, Russell S. Experimental Induction of Tenacibaculosis in Atlantic Salmon ( Salmo salar L.) Using Tenacibaculum maritimum, T. dicentrarchi, and T. finnmarkense. Pathogens 2021; 10:pathogens10111439. [PMID: 34832595 PMCID: PMC8623880 DOI: 10.3390/pathogens10111439] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Revised: 10/29/2021] [Accepted: 11/01/2021] [Indexed: 12/31/2022] Open
Abstract
There is a limited understanding of the pathogenesis of tenacibaculosis in Atlantic salmon (Salmo salar L.) and there are few reproducible exposure models for comparison. Atlantic salmon were exposed via bath to Tenacibaculum maritimum, T. dicentrarchi, or T. finnmarkense, and were then grouped with naïve cohabitants. Mortalities had exaggerated clinical signs of mouthrot, a presentation of tenacibaculosis characterized by epidermal ulceration and yellow plaques, on the mouth and less frequently on other tissues. Histopathology showed tissue spongiosis, erosion, ulceration, and necrosis ranging from mild to marked, locally to regionally extensive with mats of intralesional bacteria on the rostrum, vomer, gill rakers, gill filaments, and body surface. Exposure to T. maritimum resulted in less than a 0.4 probability of survival for both exposed and cohabitants until Day 21. Exposures to T. dicentrarchi resulted in 0 and 0.55 (exposed), and 0.8 and 0.9 (cohabitant) probability of survival to Day 12 post-exposure, while T. finnmarkense had a 0.9 probability of survival to Day 12 for all groups. This experimental infection model will be useful to further investigate the pathogenesis of tenacibaculosis, its treatment, and immunity to Tenacibaculum species.
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Affiliation(s)
- Joseph P. Nowlan
- Center for Innovation in Fish Health, Vancouver Island University, Nanaimo, BC V9R 5S5, Canada; (S.R.B.); (S.R.)
- Correspondence:
| | - Scott R. Britney
- Center for Innovation in Fish Health, Vancouver Island University, Nanaimo, BC V9R 5S5, Canada; (S.R.B.); (S.R.)
- Department of Pathobiology, University of Guelph, Guelph, ON N1G 2W1, Canada;
| | - John S. Lumsden
- Department of Pathobiology, University of Guelph, Guelph, ON N1G 2W1, Canada;
| | - Spencer Russell
- Center for Innovation in Fish Health, Vancouver Island University, Nanaimo, BC V9R 5S5, Canada; (S.R.B.); (S.R.)
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Nowlan JP, Lumsden JS, Russell S. Quantitative PCR for Tenacibaculum dicentrarchi and T. finnmarkense. JOURNAL OF FISH DISEASES 2021; 44:655-659. [PMID: 33645841 DOI: 10.1111/jfd.13357] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2020] [Revised: 02/05/2021] [Accepted: 02/07/2021] [Indexed: 06/12/2023]
Abstract
Numerous Tenacibaculum species, including T. dicentrarchi, T. maritimum and T. finnmarkense, are associated with tenacibaculosis in finfish; however, quantitative identification techniques are limited. Quantitative PCR assays were developed to detect T. dicentrarchi and T. finnmarkense. TaqMan assays using 16S rDNA demonstrated low detection limits (0.07-269 bacteria), suitable amplification efficiencies (>86%) and moderate specificity. However, the amplification of isolates with 100% sequence similarity to T. finnmarkense AY7486TD using both the T. finnmarkense and T. dicentrarchi assays indicates that other genes should be investigated. Both assays may help describe the pathogenesis of tenacibaculosis and may aid management practices for the aquaculture industry.
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Affiliation(s)
- Joseph P Nowlan
- Center of Innovation for Fish Health, Vancouver Island University, Nanaimo, British Columbia, Canada
- Pathobiology, University of Guelph, Guelph, Ontario, Canada
| | - John S Lumsden
- Pathobiology, University of Guelph, Guelph, Ontario, Canada
| | - Spencer Russell
- Center of Innovation for Fish Health, Vancouver Island University, Nanaimo, British Columbia, Canada
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Nowlan JP, Britney SR, Lumsden JS, Russell S. Application of Quantitative-PCR to Monitor Netpen Sites in British Columbia (Canada) for Tenacibaculum Species. Pathogens 2021; 10:pathogens10040414. [PMID: 33915806 PMCID: PMC8066307 DOI: 10.3390/pathogens10040414] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Revised: 03/23/2021] [Accepted: 03/30/2021] [Indexed: 12/31/2022] Open
Abstract
Tenacibaculum are frequently detected from fish with tenacibaculosis at aquaculture sites; however, information on the ecology of these bacteria is sparse. Quantitative-PCR assays were used to detect T. maritimum and T. dicentrarchi at commercial Atlantic salmon (Salmo salar) netpen sites throughout several tenacibaculosis outbreaks. T. dicentrarchi and T. maritimum were identified in live fish, dead fish, other organisms associated with netpens, water samples and on inanimate substrates, which indicates a ubiquitous distribution around stocked netpen sites. Before an outbreak, T. dicentrarchi was found throughout the environment and from fish, and T. maritimum was infrequently identified. During an outbreak, increases in the bacterial load in were recorded and no differences were recorded after an outbreak supporting the observed recrudescence of mouthrot. More bacteria were recorded in the summer months, with more mortality events and antibiotic treatments, indicating that seasonality may influence tenacibaculosis; however, outbreaks occurred in both seasons. Relationships were identified between fish mortalities and antimicrobial use to water quality parameters (temperature, salinity, dissolved oxygen) (p < 0.05), but with low R2 values (<0.25), other variables are also involved. Furthermore, Tenacibaculum species appear to have a ubiquitous spatial and temporal distribution around stocked netpen sites, and with the potential to induce disease in Atlantic salmon, continued research is needed.
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Affiliation(s)
- Joseph P. Nowlan
- Center of Innovation for Fish Health, Vancouver Island University, Nanaimo, BC V9R 5S5, Canada; (S.R.B.); (S.R.)
- Department of Pathobiology, University of Guelph, Guelph, ON N1G 2W1, Canada;
- Correspondence:
| | - Scott R. Britney
- Center of Innovation for Fish Health, Vancouver Island University, Nanaimo, BC V9R 5S5, Canada; (S.R.B.); (S.R.)
| | - John S. Lumsden
- Department of Pathobiology, University of Guelph, Guelph, ON N1G 2W1, Canada;
| | - Spencer Russell
- Center of Innovation for Fish Health, Vancouver Island University, Nanaimo, BC V9R 5S5, Canada; (S.R.B.); (S.R.)
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Nowlan JP, Lumsden JS, Russell S. Advancements in Characterizing Tenacibaculum Infections in Canada. Pathogens 2020; 9:pathogens9121029. [PMID: 33302445 PMCID: PMC7763822 DOI: 10.3390/pathogens9121029] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Revised: 12/02/2020] [Accepted: 12/03/2020] [Indexed: 12/11/2022] Open
Abstract
Tenacibaculum is a genus of gram negative, marine, filamentous bacteria, associated with the presence of disease (tenacibaculosis) at aquaculture sites worldwide; however, infections induced by this genus are poorly characterized. Documents regarding the genus Tenacibaculum and close relatives were compiled for a literature review, concentrating on ecology, identification, and impacts of potentially pathogenic species, with a focus on Atlantic salmon in Canada. Tenacibaculum species likely have a cosmopolitan distribution, but local distributions around aquaculture sites are unknown. Eight species of Tenacibaculum are currently believed to be related to numerous mortality events of fishes and few mortality events in bivalves. The clinical signs in fishes often include epidermal ulcers, atypical behaviors, and mortality. Clinical signs in bivalves often include gross ulcers and discoloration of tissues. The observed disease may differ based on the host, isolate, transmission route, and local environmental conditions. Species-specific identification techniques are limited; high sequence similarities using conventional genes (16S rDNA) indicate that new genes should be investigated. Annotating full genomes, next-generation sequencing, multilocus sequence analysis/typing (MLSA/MLST), matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF), and fatty acid methylesters (FAME) profiles could be further explored for identification purposes. However, each aforementioned technique has disadvantages. Since tenacibaculosis has been observed world-wide in fishes and other eukaryotes, and the disease has substantial economic impacts, continued research is needed.
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Affiliation(s)
- Joseph P. Nowlan
- Department of Pathobiology, University of Guelph, Guelph, OT N1G 2W1, Canada;
- Center for Innovation in Fish Health, Vancouver Island University, Nanaimo, BC V9R 5S5, Canada;
- Correspondence:
| | - John S. Lumsden
- Department of Pathobiology, University of Guelph, Guelph, OT N1G 2W1, Canada;
| | - Spencer Russell
- Center for Innovation in Fish Health, Vancouver Island University, Nanaimo, BC V9R 5S5, Canada;
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Alix M, Gasset E, Bardon-Albaret A, Noel J, Pirot N, Perez V, Coves D, Saulnier D, Lignot JH, Cucchi PN. Description of the unusual digestive tract of Platax orbicularis and the potential impact of Tenacibaculum maritimum infection. PeerJ 2020; 8:e9966. [PMID: 33024633 PMCID: PMC7520087 DOI: 10.7717/peerj.9966] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Accepted: 08/26/2020] [Indexed: 12/11/2022] Open
Abstract
Background Ephippidae fish are characterized by a discoid shape with a very small visceral cavity. Among them Platax orbicularis has a high economic potential due to its flesh quality and flesh to carcass ratio. Nonetheless, the development of its aquaculture is limited by high mortality rates, especially due to Tenacibaculum maritimum infection, occurring one to three weeks after the transfer of fishes from bio-secure land-based aquaculture system to the lagoon cages for growth. Among the lines of defense against this microbial infection, the gastrointestinal tract (GIT) is less studied. The knowledge about the morphofunctional anatomy of this organ in P. orbicularis is still scarce. Therefore, the aims of this study are to characterize the GIT in non-infected P. orbicularis juveniles to then investigate the impact of T. maritimum on this multifunctional organ. Methods In the first place, the morpho-anatomy of the GIT in non-infected individuals was characterized using various histological techniques. Then, infected individuals, experimentally challenged by T. maritimum were analysed and compared to the previously established GIT reference. Results The overlapped shape of the GIT of P. orbicularis is probably due to its constrained compaction in a narrow visceral cavity. Firstly, the GIT was divided into 10 sections, from the esophagus to the rectum. For each section, the structure of the walls was characterized, with a focus on mucus secretions and the presence of the Na+/K+ ATPase pump. An identification key allowing the characterization of the GIT sections using in toto histology is given. Secondly, individuals challenged with T. maritimum exhibited differences in mucus type and proportion and, modifications in the mucosal and muscle layers. These changes could induce an imbalance in the trade-off between the GIT functions which may be in favour of protection and immunity to the disadvantage of nutrition capacities.
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Affiliation(s)
- Maud Alix
- MARBEC, Univ Montpellier, CNRS, Ifremer, IRD, Montpellier, France.,Institute of Marine Research, Bergen, Norway
| | - Eric Gasset
- MARBEC, Univ Montpellier, CNRS, Ifremer, IRD, Montpellier, France
| | - Agnes Bardon-Albaret
- Ifremer, UMR Ecosystèmes Insulaires Océaniens, UPF, ILM, IRD, Tahiti, French Polynesia
| | - Jean Noel
- BCM, Université de Montpellier, CNRS, INSERM, Montpellier, France.,IRCM, Université de Montpellier, ICM, INSERM, Montpellier, France
| | - Nelly Pirot
- BCM, Université de Montpellier, CNRS, INSERM, Montpellier, France.,IRCM, Université de Montpellier, ICM, INSERM, Montpellier, France
| | - Valérie Perez
- MARBEC, Univ Montpellier, CNRS, Ifremer, IRD, Montpellier, France
| | - Denis Coves
- MARBEC, Univ Montpellier, CNRS, Ifremer, IRD, Montpellier, France
| | - Denis Saulnier
- Ifremer, UMR Ecosystèmes Insulaires Océaniens, UPF, ILM, IRD, Tahiti, French Polynesia
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12
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Stabili L, Rizzo L, Basso L, Marzano M, Fosso B, Pesole G, Piraino S. The Microbial Community Associated with Rhizostoma pulmo: Ecological Significance and Potential Consequences for Marine Organisms and Human Health. Mar Drugs 2020; 18:md18090437. [PMID: 32839397 PMCID: PMC7551628 DOI: 10.3390/md18090437] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Revised: 08/12/2020] [Accepted: 08/18/2020] [Indexed: 01/02/2023] Open
Abstract
Jellyfish blooms are frequent and widespread in coastal areas worldwide, often associated with significant ecological and socio-economic consequences. Recent studies have also suggested cnidarian jellyfish may act as vectors of bacterial pathogens. The scyphomedusa Rhizostoma pulmo is an outbreak-forming jellyfish widely occurring across the Mediterranean basin. Using combination of culture-based approaches and a high-throughput amplicon sequencing (HTS), and based on available knowledge on a warm-affinity jellyfish-associated microbiome, we compared the microbial community associated with R. pulmo adult jellyfish in the Gulf of Taranto (Ionian Sea) between summer (July 2016) and winter (February 2017) sampling periods. The jellyfish-associated microbiota was investigated in three distinct compartments, namely umbrella, oral arms, and the mucus secretion. Actinobacteria, Bacteroidetes, Chlamydiae, Cyanobacteria, Deinococcus-Thermus, Firmicutes, Fusobacteria, Planctomycetes, Proteobacteria, Rhodothermaeota, Spirochaetes, Tenericutes, and Thaumarchaeota were the phyla isolated from all the three R. pulmo compartments in the sampling times. In particular, the main genera Mycoplasma and Spiroplasma, belonging to the class Mollicutes (phylum Tenericutes), have been identified in all the three jellyfish compartments. The taxonomic microbial data were coupled with metabolic profiles resulting from the utilization of 31 different carbon sources by the BIOLOG Eco-Plate system. Microorganisms associated with mucus are characterized by great diversity. The counts of culturable heterotrophic bacteria and potential metabolic activities are also remarkable. Results are discussed in terms of R. pulmo ecology, the potential health hazard for marine and human life as well as the potential biotechnological applications related to the associated microbiome.
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Affiliation(s)
- Loredana Stabili
- Department of Biological and Environmental Sciences and Technologies, University of Salento, Via Prov.le Lecce Monteroni, 73100 Lecce, Italy; (L.B.); (S.P.)
- Institute of Water Research of the National Research Council, S.S. di Taranto, Via Roma 3, 74123 Taranto, Italy
- Correspondence: (L.S.); (L.R.); (M.M.)
| | - Lucia Rizzo
- Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy
- Correspondence: (L.S.); (L.R.); (M.M.)
| | - Lorena Basso
- Department of Biological and Environmental Sciences and Technologies, University of Salento, Via Prov.le Lecce Monteroni, 73100 Lecce, Italy; (L.B.); (S.P.)
| | - Marinella Marzano
- Istituto di Biomembrane, Bioenergetica e Biotecnologie Molecolari (IBIOM), CNR, 70126 Bari, Italy; (B.F.); (G.P.)
- Correspondence: (L.S.); (L.R.); (M.M.)
| | - Bruno Fosso
- Istituto di Biomembrane, Bioenergetica e Biotecnologie Molecolari (IBIOM), CNR, 70126 Bari, Italy; (B.F.); (G.P.)
| | - Graziano Pesole
- Istituto di Biomembrane, Bioenergetica e Biotecnologie Molecolari (IBIOM), CNR, 70126 Bari, Italy; (B.F.); (G.P.)
- Dipartimento di Bioscienze, Biotecnologie e Biofarmaceutica, Università degli Studi di Bari “Aldo Moro”, 70121 Bari, Italy
| | - Stefano Piraino
- Department of Biological and Environmental Sciences and Technologies, University of Salento, Via Prov.le Lecce Monteroni, 73100 Lecce, Italy; (L.B.); (S.P.)
- CoNISMa, Piazzale Flaminio 9, 00196 Rome, Italy
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13
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Slinger J, Adams MB, Wynne JW. Bacteriomic Profiling of Branchial Lesions Induced by Neoparamoeba perurans Challenge Reveals Commensal Dysbiosis and an Association with Tenacibaculum dicentrarchi in AGD-Affected Atlantic Salmon ( Salmo salar L.). Microorganisms 2020; 8:E1189. [PMID: 32764238 PMCID: PMC7464746 DOI: 10.3390/microorganisms8081189] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Revised: 07/28/2020] [Accepted: 07/31/2020] [Indexed: 12/22/2022] Open
Abstract
Amoebic gill disease is a parasitic condition that commonly affects marine farmed Atlantic salmon. The causative agent, Neoparamoeba perurans, induces a marked proliferation of the gill mucosa and focal superficial necrosis upon branchial lesions. The effect that amoebic branchialitis has upon gill associated commensal bacteria is unknown. A 16S rRNA sequencing approach was employed to profile changes in bacterial community composition, within amoebic gill disease (AGD)-affected and non-affected gill tissue. The bacterial diversity of biopsies with and without diseased tissue was significantly lower in the AGD-affected fish compared to uninfected fish. Furthermore, within the AGD-affected tissue, lesions appeared to contain a significantly higher abundance of the Flavobacterium, Tenacibaculum dicentrarchi compared to adjunct unaffected tissues. Quantitative PCR specific to both N. perurans and T. dicentrarchi was used to further examine the co-abundance of these known fish pathogens. A moderate positive correlation between these pathogens was observed. Taken together, the present study sheds new light on the complex interaction between the host, parasite and bacterial communities during AGD progression. The role that T. dicentrarchi may play in this complex relationship requires further investigation.
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Affiliation(s)
- Joel Slinger
- CSIRO Agriculture and Food, Aquaculture Program, Bribie Island, QLD 4507, Australia
- Institute of Marine and Antarctic Studies, University of Tasmania, Launceston, TAS 7250, Australia;
| | - Mark B. Adams
- Institute of Marine and Antarctic Studies, University of Tasmania, Launceston, TAS 7250, Australia;
| | - James W. Wynne
- CSIRO Agriculture and Food, Aquaculture Program, Hobart, TAS 7000, Australia;
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14
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Jia B, Delphino MKVC, Awosile B, Hewison T, Whittaker P, Morrison D, Kamaitis M, Siah A, Milligan B, Johnson SC, Gardner IA. Review of infectious agent occurrence in wild salmonids in British Columbia, Canada. JOURNAL OF FISH DISEASES 2020; 43:153-175. [PMID: 31742733 DOI: 10.1111/jfd.13084] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Revised: 08/22/2019] [Accepted: 08/26/2019] [Indexed: 06/10/2023]
Abstract
Wild Pacific salmonids (WPS) are economically and culturally important to the Pacific North region. Most recently, some populations of WPS have been in decline. Of hypothesized factors contributing to the decline, infectious agents have been postulated to increase the risk of mortality in Pacific salmon. We present a literature review of both published journal and unpublished data to describe the distribution of infectious agents reported in wild Pacific salmonid populations in British Columbia (BC), Canada. We targeted 10 infectious agents, considered to potentially cause severe economic losses in Atlantic salmon or be of conservation concern for wild salmon in BC. The findings indicated a low frequency of infectious hematopoietic necrosis virus, piscine orthoreovirus, viral haemorrhagic septicaemia virus, Aeromonas salmonicida, Renibacterium salmoninarum, Piscirickettsia salmonis and other Rickettsia-like organisms, Yersinia ruckeri, Tenacibaculum maritimum and Moritella viscosa. No positive results were reported for infestations with Paramoeba perurans in peer-reviewed papers and the DFO Fish Pathology Program database. This review synthesizes existing information, as well as gaps therein, that can support the design and implementation of a long-term surveillance programme of infectious agents in wild salmonids in BC.
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Affiliation(s)
- Beibei Jia
- Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PE, Canada
| | - Marina K V C Delphino
- Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PE, Canada
| | - Babafela Awosile
- Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PE, Canada
| | - Tim Hewison
- Grieg Seafood BC Ltd., Campbell River, BC, Canada
| | | | | | | | - Ahmed Siah
- British Columbia Centre for Aquatic Health Sciences, Campbell River, BC, Canada
| | | | - Stewart C Johnson
- Pacific Biological Station, Fisheries and Oceans Canada (DFO), Nanaimo, BC, Canada
| | - Ian A Gardner
- Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PE, Canada
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15
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Teffer AK, Carr J, Tabata A, Schulze A, Bradbury I, Deschamps D, Gillis CA, Brunsdon EB, Mordecai G, Miller KM. A molecular assessment of infectious agents carried by Atlantic salmon at sea and in three eastern Canadian rivers, including aquaculture escapees and North American and European origin wild stocks. Facets (Ott) 2020. [DOI: 10.1139/facets-2019-0048] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
Infectious agents are key components of animal ecology and drivers of host population dynamics. Knowledge of their diversity and transmission in the wild is necessary for the management and conservation of host species like Atlantic salmon ( Salmo salar). Although pathogen exchange can occur throughout the salmon life cycle, evidence is lacking to support transmission during population mixing at sea or between farmed and wild salmon due to aquaculture exposure. We tested these hypotheses using a molecular approach that identified infectious agents and transmission potential among sub-adult Atlantic salmon at marine feeding areas and adults in three eastern Canadian rivers with varying aquaculture influence. We used high-throughput qPCR to quantify infection profiles and next generation sequencing to measure genomic variation among viral isolates. We identified 14 agents, including five not yet described as occurring in Eastern Canada. Phylogenetic analysis of piscine orthoreovirus showed homology between isolates from European and North American origin fish at sea, supporting the hypothesis of intercontinental transmission. We found no evidence to support aquaculture influence on wild adult infections, which varied relative to environmental conditions, life stage, and host origin. Our findings identify research opportunities regarding pathogen transmission and biological significance for wild Atlantic salmon populations.
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Affiliation(s)
- Amy K. Teffer
- Department of Forest and Conservation Sciences, University of British Columbia, 2424 Main Mall, Vancouver, BC V6T 1Z4, Canada
| | - Jonathan Carr
- Atlantic Salmon Federation, Chamcook, NB E5B 3A9, Canada
| | - Amy Tabata
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, BC V9T 6N7, Canada
| | - Angela Schulze
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, BC V9T 6N7, Canada
| | - Ian Bradbury
- Salmonids Section, Fisheries and Oceans Canada, St. John’s, NF A1C 5X1, Canada
| | - Denise Deschamps
- Ministère des Forêts, de la Faune et des Parcs du Québec, Direction de l’expertise sur la faune aquatique, Quebec, QC G1S 4X4, Canada
| | | | | | - Gideon Mordecai
- Department of Medicine, University of British Columbia, Vancouver, BC V5Z 1M9, Canada
| | - Kristina M. Miller
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, BC V9T 6N7, Canada
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16
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Basso L, Rizzo L, Marzano M, Intranuovo M, Fosso B, Pesole G, Piraino S, Stabili L. Jellyfish summer outbreaks as bacterial vectors and potential hazards for marine animals and humans health? The case of Rhizostoma pulmo (Scyphozoa, Cnidaria). THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 692:305-318. [PMID: 31349170 DOI: 10.1016/j.scitotenv.2019.07.155] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2019] [Revised: 07/04/2019] [Accepted: 07/11/2019] [Indexed: 06/10/2023]
Abstract
Jellyfish represent an important component of marine food webs characterized by large fluctuations of population density, with the ability to abruptly form outbreaks, followed by rarity periods. In spite of considerable efforts to investigate how jellyfish populations are responding globally to anthropogenic change, available evidence still remains unclear. In the last 50 years, jellyfish are seemingly on the rise in a number of coastal areas, including the Mediterranean Sea, where jellyfish blooms periodically become an issue to marine and maritime human activities. Their impacts on marine organism welfare have been poorly quantified. The jellyfish, Rhizostoma pulmo, is an outbreak-forming scyphomedusa whose large populations spread across the Mediterranean, with increasing periodicity and variable abundance. Studies on cnidarian jellyfish suggested being important vectors of bacterial pathogens. In the present study, by combination of conventional culture-based methods and a high-throughput amplicon sequencing (HTS) approach, we characterized the diversity of the bacterial community associated with this jellyfish during their summer outbreak. Three distinct jellyfish compartments, namely umbrella, oral arms, and the mucus secretion obtained from whole specimens were screened for specifically associated microbiota. A total of 17 phyla, 30 classes, 73 orders, 146 families and 329 genera of microbial organisms were represented in R. pulmo samples with three major clades (i.e. Spiroplasma, Mycoplasma and Wolinella) representing over 90% of the retrieved total sequences. The taxonomic microbial inventory was then combined with metabolic profiling data obtained from the Biolog Eco-Plate system. Significant differences among the jellyfish compartments were detected in terms of bacterial abundance, diversity and metabolic utilization of 31 different carbon sources with the highest value of abundance and metabolic potential in the mucus secretion compared to the umbrella and oral arms. Results are discussed in the framework of the species ecology as well as the potential health hazard for marine organisms and humans.
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Affiliation(s)
- Lorena Basso
- Department of Biological and Environmental Sciences and Technologies, University of Salento, Lecce, Italy; Consorzio Nazionale Interuniversitario per le Scienze del Mare, CoNISMa, Piazzale Flaminio 9, 00196 Roma, Italy
| | - Lucia Rizzo
- Consorzio Nazionale Interuniversitario per le Scienze del Mare, CoNISMa, Piazzale Flaminio 9, 00196 Roma, Italy; Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy
| | - Marinella Marzano
- Istituto di Biomembrane, Bioenergetica e Biotecnologie Molecolari (IBIOM), CNR, Bari, Italy
| | - Marianna Intranuovo
- Dipartimento di Bioscienze, Biotecnologie e Biofarmaceutica, Università degli Studi di Bari "Aldo Moro", Bari, Italy
| | - Bruno Fosso
- Istituto di Biomembrane, Bioenergetica e Biotecnologie Molecolari (IBIOM), CNR, Bari, Italy
| | - Graziano Pesole
- Istituto di Biomembrane, Bioenergetica e Biotecnologie Molecolari (IBIOM), CNR, Bari, Italy; Dipartimento di Bioscienze, Biotecnologie e Biofarmaceutica, Università degli Studi di Bari "Aldo Moro", Bari, Italy.
| | - Stefano Piraino
- Department of Biological and Environmental Sciences and Technologies, University of Salento, Lecce, Italy; Consorzio Nazionale Interuniversitario per le Scienze del Mare, CoNISMa, Piazzale Flaminio 9, 00196 Roma, Italy.
| | - Loredana Stabili
- Department of Biological and Environmental Sciences and Technologies, University of Salento, Lecce, Italy; Water Research Institute of the National Research Council, (IRSA-CNR), Taranto, Italy.
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17
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Torres-Corral Y, Fernández-Álvarez C, Santos Y. High-throughput identification and quantification of Vagococcus salmoninarum by SYBR Green I-based real-time PCR combined with melting curve analysis. JOURNAL OF FISH DISEASES 2019; 42:1359-1368. [PMID: 31359457 DOI: 10.1111/jfd.13053] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Revised: 06/14/2019] [Accepted: 06/17/2019] [Indexed: 06/10/2023]
Abstract
This work describes a primer pair and a high-throughput SYBR Green I-based real-time PCR protocol combined with melting curve analysis for identification and quantification of Vagococcus salmoninarum in bacterial cultures and infected fish tissues. The 16S rRNA gene was selected for the design of the primer pair (SalF and SalR). The sensitivity and specificity of this primer pair were compared with other previously designed for conventional PCR. Although both primer pairs showed 100% specificity using pure bacterial cultures or DNA extracted from bacteria or fish tissues, the primer pairs designed in this study showed the highest sensitivity with a detection limit of 0.034 × 100 amplicon copies per assay (equivalent to 2 × 10-11 ng/µl, Cq value of 30.49 ± 1.71). The developed qPCR protocol allowed the detection of V. salmoninarum in non-lethal and lethal fish samples with detection levels of 0.17 × 100 gene copies in tissues artificially infected and 0.02 × 100 in tissues of fish experimentally infected with V. salmoninarum. The high sensitivity of the developed method suggests that it could be considered as a useful tool for diagnosis of vagococcosis and the detection of V. salmoninarum in asymptomatic or carrier fish.
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Affiliation(s)
- Yolanda Torres-Corral
- Departamento de Microbiología y Parasitología, Instituto de Investigación y Análisis Alimentario, Universidad de Santiago de Compostela, Santiago de Compostela, Spain
| | - Clara Fernández-Álvarez
- Departamento de Microbiología y Parasitología, Instituto de Investigación y Análisis Alimentario, Universidad de Santiago de Compostela, Santiago de Compostela, Spain
| | - Ysabel Santos
- Departamento de Microbiología y Parasitología, Instituto de Investigación y Análisis Alimentario, Universidad de Santiago de Compostela, Santiago de Compostela, Spain
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18
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Teffer AK, Miller KM. A Comparison of Nonlethal and Destructive Methods for Broad-Based Infectious Agent Screening of Chinook Salmon Using High-Throughput qPCR. JOURNAL OF AQUATIC ANIMAL HEALTH 2019; 31:274-289. [PMID: 31343778 DOI: 10.1002/aah.10079] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2019] [Accepted: 07/20/2019] [Indexed: 06/10/2023]
Abstract
Molecular tools, such as high-throughput quantitative polymerase chain reaction (HT-qPCR), are useful for monitoring multiple infectious agents in wild animal populations (i.e., broad-based screening). If destructive tissue samples cannot be obtained due to experimental design requirements (e.g., bio-telemetry; holding with repeated biopsy) or the conservation status of host species, then nonlethally sampled tissues can be substituted. However, infection profiles have been found to differ between nonlethally and destructively sampled tissues. We present a comparative analysis of nonlethal (gill and blood) and destructive (pool of internal and external tissue) approaches for broad-based infectious agent screening of adult Chinook Salmon Oncorhynchus tshawytscha. Of a possible 47 agents, 16 were detected overall by nonlethal and destructive methods. Our results indicated moderate differences in infection profiles among tissues, with limitations of each tissue type dependent on the ecology of each agent. The gill was the most comprehensive screening tissue, as more infectious agents were detected overall in gill (n = 16) than in blood (n = 12) or multi-tissue pools (n = 15). The agreement in the estimated agent prevalence between tissue types ranged from poor to excellent, while overall agent community structure (the combined prevalence of all agents) showed low agreement between tissue types. Two agents occurred at 100% prevalence in all tissue types. Nine agents, including types of bacteria and gill parasites, were more prevalent in gill than in blood, while five agents, including one virus and several microparasites, were more prevalent in blood. Future studies should pair microscopy and histopathology with HT-qPCR to better characterize host health and disease development relative to molecular detection of agents across tissue types.
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Affiliation(s)
- Amy K Teffer
- Department of Biology, University of Victoria, Post Office Box 1700, Station CSC, Victoria, British Columbia, V8W 2Y2, Canada
| | - Kristina M Miller
- Fisheries and Oceans Canada, Molecular Genetics Section, Pacific Biological Station, 3190 Hammond Bay Road, Nanaimo, British Columbia, V9T 6N7, Canada
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19
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Brosnahan CL, Georgiades E, McDonald C, Keeling SE, Munday JS, Jones B. Optimisation and validation of a PCR to detect viable Tenacibaculum maritimum in salmon skin tissue samples. J Microbiol Methods 2019; 159:186-193. [PMID: 30877014 DOI: 10.1016/j.mimet.2019.03.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2019] [Revised: 03/11/2019] [Accepted: 03/11/2019] [Indexed: 10/27/2022]
Abstract
A PCR protocol was optimised and validated for the detection of viable Tenacibaculum maritimum cells in salmon skin tissue. Viability conventional (vPCR) and quantitative PCR (v-qPCR) assays both had a limit of detection of 103 CFU mL-1 viable cells. The v-qPCR assay showed a linear quantification over 4 log units. Conventional vPCR showed complete signal suppression when only dead cells were present at concentrations lower than 106 CFU mL-1. While the v-qPCR did not result in complete suppression when only dead cells were present, a method was developed to determine if viable cells were present based on the % Δ in cycle threshold (Ct) value. The procedure was validated for high-throughput processing and an enrichment protocol was validated to reliably detect low concentrations of viable cells both with and without a high background of dead cells. Performing this protocol on naturally infected tissues showed that vPCR and v-qPCR reduced the potential for false positives compared to using conventional PCR and qPCR. The optimised protocol developed for this study provides an efficient, reliable and robust alternative for the detection of viable T. maritimum in skin tissue.
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Affiliation(s)
- C L Brosnahan
- Ministry for Primary Industries, Wellington, New Zealand; School of Veterinary Science, Massey University, Palmerston North, New Zealand.
| | - E Georgiades
- Ministry for Primary Industries, Wellington, New Zealand
| | - C McDonald
- Ministry for Primary Industries, Wellington, New Zealand
| | - S E Keeling
- Ministry for Primary Industries, Wellington, New Zealand
| | - J S Munday
- School of Veterinary Science, Massey University, Palmerston North, New Zealand
| | - B Jones
- Murdoch University, School of Veterinary and Life Sciences, Perth, WA, Australia
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20
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Tinta T, Kogovšek T, Klun K, Malej A, Herndl GJ, Turk V. Jellyfish-Associated Microbiome in the Marine Environment: Exploring Its Biotechnological Potential. Mar Drugs 2019; 17:E94. [PMID: 30717239 PMCID: PMC6410321 DOI: 10.3390/md17020094] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Revised: 01/25/2019] [Accepted: 01/29/2019] [Indexed: 12/25/2022] Open
Abstract
Despite accumulating evidence of the importance of the jellyfish-associated microbiome to jellyfish, its potential relevance to blue biotechnology has only recently been recognized. In this review, we emphasize the biotechnological potential of host⁻microorganism systems and focus on gelatinous zooplankton as a host for the microbiome with biotechnological potential. The basic characteristics of jellyfish-associated microbial communities, the mechanisms underlying the jellyfish-microbe relationship, and the role/function of the jellyfish-associated microbiome and its biotechnological potential are reviewed. It appears that the jellyfish-associated microbiome is discrete from the microbial community in the ambient seawater, exhibiting a certain degree of specialization with some preferences for specific jellyfish taxa and for specific jellyfish populations, life stages, and body parts. In addition, different sampling approaches and methodologies to study the phylogenetic diversity of the jellyfish-associated microbiome are described and discussed. Finally, some general conclusions are drawn from the existing literature and future research directions are highlighted on the jellyfish-associated microbiome.
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Affiliation(s)
- Tinkara Tinta
- Department of Limnology and Bio-Oceanography, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria.
- Marine Biology Station Piran, National Institute of Biology, Fornače 41, 6330 Piran, Slovenia.
| | - Tjaša Kogovšek
- Marine Biology Station Piran, National Institute of Biology, Fornače 41, 6330 Piran, Slovenia.
| | - Katja Klun
- Marine Biology Station Piran, National Institute of Biology, Fornače 41, 6330 Piran, Slovenia.
| | - Alenka Malej
- Marine Biology Station Piran, National Institute of Biology, Fornače 41, 6330 Piran, Slovenia.
| | - Gerhard J Herndl
- Department of Limnology and Bio-Oceanography, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria.
- NIOZ, Department of Marine Microbiology and Biogeochemistry, Royal Netherlands Institute for Sea Research, Utrecht University, 1790 AB Den Burg, The Netherlands.
| | - Valentina Turk
- Marine Biology Station Piran, National Institute of Biology, Fornače 41, 6330 Piran, Slovenia.
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21
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Brosnahan CL, Munday JS, Ha HJ, Preece M, Jones JB. New Zealand rickettsia-like organism (NZ-RLO) and Tenacibaculum maritimum: Distribution and phylogeny in farmed Chinook salmon (Oncorhynchus tshawytscha). JOURNAL OF FISH DISEASES 2019; 42:85-95. [PMID: 30411368 DOI: 10.1111/jfd.12909] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2018] [Revised: 09/11/2018] [Accepted: 09/12/2018] [Indexed: 06/08/2023]
Abstract
A total of 777 fish from three growing regions of New Zealand Chinook salmon farms comprising of five sites were tested. Quantitative PCR was used to determine the distribution of New Zealand rickettsia-like organism and Tenacibaculum maritimum. Genetic information from these bacteria were then compared with strains reported worldwide. Using this information, suggested associations of pathogens with clinically affected fish were made. NZ-RLO was detected in two of the three regions, and T. maritimum was detected in all regions. Three strains of NZ-RLO were identified during this study. Based on analysis of the ITS rRNA gene, NZ-RLO1 appears to be part of an Australasian grouping sharing high similarity with the Tasmanian RLO, NZ-RLO2 was shown to be the same as an Irish strain, and NZ-RLO3 was shown be closely related to two strains from Chile. Based on multi-locus sequence typing, the New Zealand T. maritimum was the same as Australian strains. NZ-RLOs were detected more frequently in fish with skin ulcers than fish without skin ulcers. While additional research is required to investigate the pathogenicity of these organisms, this is the first time that NZ-RLOs have been associated with the development of clinical infections in farmed Chinook salmon.
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Affiliation(s)
- Cara L Brosnahan
- Animal Health Laboratory, Ministry for Primary Industries, Upper Hutt, New Zealand
- School of Veterinary Science, Massey University, Palmerston North, New Zealand
| | - John S Munday
- School of Veterinary Science, Massey University, Palmerston North, New Zealand
| | - Hye Jeong Ha
- Animal Health Laboratory, Ministry for Primary Industries, Upper Hutt, New Zealand
| | - Mark Preece
- New Zealand King Salmon, Picton, New Zealand
| | - John B Jones
- Murdoch University School of Veterinary and Life Sciences, Perth, WA, Australia
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22
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Frisch K, Småge SB, Johansen R, Duesund H, Brevik ØJ, Nylund A. Pathology of experimentally induced mouthrot caused by Tenacibaculum maritimum in Atlantic salmon smolts. PLoS One 2018; 13:e0206951. [PMID: 30383870 PMCID: PMC6211739 DOI: 10.1371/journal.pone.0206951] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2018] [Accepted: 10/22/2018] [Indexed: 11/18/2022] Open
Abstract
Mouthrot, caused by Tenacibaculum maritimum is a significant disease of farmed Atlantic salmon, Salmo salar on the West Coast of North America. Smolts recently transferred into saltwater are the most susceptible and affected fish die with little internal or external clinical signs other than the characteristic small (usually < 5 mm) yellow plaques that are present inside the mouth. The mechanism by which these smolts die is unknown. This study investigated the microscopic pathology (histology and scanning electron microscopy) of bath infected smolts with Western Canadian T. maritimum isolates TmarCan15-1, TmarCan16-1 and TmarCan16-5 and compared the findings to what is seen in a natural outbreak of mouthrot. A real-time RT-PCR assay based on the outer membrane protein A specific for T. maritimum was designed and used to investigate the tissue tropism of the bacteria. The results from this showed that T. maritimum is detectable internally by real-time RT-PCR. This combined with the fact that the bacteria can be isolated from the kidney suggests that T. maritimum becomes systemic. The pathology in the infected smolts is primarily mouth lesions, including damaged tissues surrounding the teeth; the disease is similar to periodontal disease in mammals. The pathological changes are focal, severe, and occur very rapidly with little associated inflammation. Skin lesions are more common in experimentally infected smolts than in natural outbreaks, but this could be an artefact of the challenge dose, handling and tank used during the experiments.
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Affiliation(s)
- Kathleen Frisch
- Cermaq Group AS, Oslo, Norway
- Fish Disease Research Group, Department of Biology, University of Bergen, Bergen, Norway
- * E-mail:
| | - Sverre Bang Småge
- Cermaq Group AS, Oslo, Norway
- Fish Disease Research Group, Department of Biology, University of Bergen, Bergen, Norway
| | | | | | | | - Are Nylund
- Fish Disease Research Group, Department of Biology, University of Bergen, Bergen, Norway
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Bridel S, Olsen AB, Nilsen H, Bernardet JF, Achaz G, Avendaño-Herrera R, Duchaud E. Comparative Genomics of Tenacibaculum dicentrarchi and "Tenacibaculum finnmarkense" Highlights Intricate Evolution of Fish-Pathogenic Species. Genome Biol Evol 2018; 10:452-457. [PMID: 29360975 PMCID: PMC5793721 DOI: 10.1093/gbe/evy020] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/18/2018] [Indexed: 01/03/2023] Open
Abstract
The genus Tenacibaculum encompasses several species pathogenic for marine fish. Tenacibaculum dicentrarchi and "Tenacibaculum finnmarkense" (Quotation marks denote species that have not been validly named.) were retrieved from skin lesions of farmed fish such as European sea bass or Atlantic salmon. They cause a condition referred to as tenacibaculosis and severe outbreaks and important fish losses have been reported in Spanish, Norwegian, and Chilean marine farms. We report here the draft genomes of the T. dicentrarchi and "T. finnmarkense" type strains. These genomes were compared with draft genomes from field isolates retrieved from Chile and Norway and with previously published Tenacibaculum genomes. We used Average Nucleotide Identity and core genome-based phylogeny as a proxy index for species boundary delineation. This work highlights evolution of closely related fish-pathogenic species and suggests that homologous recombination likely contributes to genome evolution. It also corrects the species affiliation of strain AYD7486TD claimed by Grothusen et al. (2016).
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Affiliation(s)
- Sébastien Bridel
- VIM, INRA, Université Paris-Saclay, Jouy-en-Josas, France.,Labofarm, Finalab, Loudéac, France.,Université de Versailles Saint-Quentin-En-Yvelines, Montigny-Le-Bretonneux, France
| | | | | | | | - Guillaume Achaz
- Atelier de Bioinformatique, UMR 7205 ISyEB, MNHN-UPMC-CNRS-EPHE, Muséum National d'Histoire Naturelle, Paris, France
| | - Ruben Avendaño-Herrera
- Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Departamento de Ciencias Biológicas, Facultad de Ciencias Biológicas, Universidad Andrés Bello, Viña del Mar, Chile.,Interdisciplinary Center for Aquaculture Research (INCAR), Concepción, Chile
| | - Eric Duchaud
- VIM, INRA, Université Paris-Saclay, Jouy-en-Josas, France
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24
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Identification and typing of fish pathogenic species of the genus Tenacibaculum. Appl Microbiol Biotechnol 2018; 102:9973-9989. [DOI: 10.1007/s00253-018-9370-1] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2018] [Revised: 09/03/2018] [Accepted: 09/04/2018] [Indexed: 02/07/2023]
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25
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Downes JK, Yatabe T, Marcos-Lopez M, Rodger HD, MacCarthy E, O'Connor I, Collins E, Ruane NM. Investigation of co-infections with pathogens associated with gill disease in Atlantic salmon during an amoebic gill disease outbreak. JOURNAL OF FISH DISEASES 2018; 41:1217-1227. [PMID: 29806080 DOI: 10.1111/jfd.12814] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2017] [Revised: 03/13/2018] [Accepted: 03/14/2018] [Indexed: 06/08/2023]
Abstract
Gill diseases are a complex and multifactorial challenge for marine farmed Atlantic salmon. Co-infections with putative pathogens are common on farms; however, there is a lack of knowledge in relation to the potential effect co-infections may have on pathology. The objective of this study was to determine the prevalence and potential effects of Neoparamoeba perurans, Desmozoon lepeophtherii, Candidatus Branchiomonas cysticola, Tenacibaculum maritimum and salmon gill poxvirus (SGPV) during a longitudinal study on a marine Atlantic salmon farm. Real-time PCR was used to determine the presence and sequential infection patterns of these pathogens on gill samples collected from stocking until harvest. A number of multilevel models were used to determine the effect of these putative pathogens on gill health (measured as gill histopathology score), while adjusting for the effect of water temperature and time since the last freshwater treatment. Results indicate that between 12 and 16 weeks post-seawater transfer (wpst), colonization of the gills by all pathogens had commenced and by week 16 of marine production each of the pathogens had been detected. D. lepeophtherii and Candidatus B. cysticola were by far the most prevalent of the potential pathogens detected during this study. Detections of T. maritimum were found to be significantly correlated with temperature showing distinct seasonality. Salmon gill poxvirus was found to be highly sporadic and detected in the first sampling point, suggesting a carryover from the freshwater stage of production. Finally, the model results indicated no clear effect between any of the pathogens. Additionally, the models showed that the only variable which had a consistent effect on the histology score was N. perurans.
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Affiliation(s)
- J K Downes
- Fish Health Unit, Marine Institute, Oranmore, Galway, Ireland
- Marine and Freshwater Research Centre, Galway Mayo Institute of Technology, Galway, Ireland
| | - T Yatabe
- Department Medicine & Epidemiology, School Veterinary Medicine, Center for Animal Disease Modeling and Surveillance (CADMS), University of California, Davis, Davis, CA, USA
| | - M Marcos-Lopez
- Marine and Freshwater Research Centre, Galway Mayo Institute of Technology, Galway, Ireland
- Fish Vet Group, Unit 7b, Oranmore, Galway, Ireland
| | - H D Rodger
- Fish Vet Group, Unit 7b, Oranmore, Galway, Ireland
| | - E MacCarthy
- Marine and Freshwater Research Centre, Galway Mayo Institute of Technology, Galway, Ireland
| | - I O'Connor
- Marine and Freshwater Research Centre, Galway Mayo Institute of Technology, Galway, Ireland
| | - E Collins
- Fish Health Unit, Marine Institute, Oranmore, Galway, Ireland
| | - N M Ruane
- Fish Health Unit, Marine Institute, Oranmore, Galway, Ireland
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26
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Småge SB, Brevik ØJ, Frisch K, Watanabe K, Duesund H, Nylund A. Concurrent jellyfish blooms and tenacibaculosis outbreaks in Northern Norwegian Atlantic salmon (Salmo salar) farms. PLoS One 2017; 12:e0187476. [PMID: 29095885 PMCID: PMC5667831 DOI: 10.1371/journal.pone.0187476] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2017] [Accepted: 10/22/2017] [Indexed: 11/18/2022] Open
Abstract
Tenacibaculosis is an increasing problem in the Norwegian Atlantic salmon aquaculture industry causing significant economic losses. In September 2015, two separate outbreaks of suspected tenacibaculosis occurred at two Atlantic salmon farms in Finnmark County in Northern Norway. The events resulted in major losses of smolts newly transferred into seawater. Prior to, and during the outbreaks, large numbers of small jellyfish, identified as Dipleurosoma typicum (Boeck) were observed in the vicinity of the farms and inside the net-pens. This study investigates the possible link between the jellyfish, Tenacibaculum spp. and the tenacibaculosis outbreaks. Bacteriology, histology, scanning and transmission electron microscopy, and real-time RT-PCR screening were performed on both fish and jellyfish samples. Based on the findings, Tenacibaculum finnmarkense was found to be the dominant bacteria associated with the tenacibaculosis outbreaks at both sites and that D. typicum is unlikely to be a vector for this fish pathogenic bacterium. However, results do show that the jellyfish caused direct damage to the fish's skin and may have exacerbated the bacterial infection by allowing an entry point for bacteria.
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Affiliation(s)
- Sverre Bang Småge
- Cermaq Group AS, Dronning Eufemiasgate 16, Oslo, Norway
- Fish Disease Research Group, Department of Biology, University of Bergen, Thormøhlensgate 55, Bergen, Norway
- * E-mail:
| | - Øyvind Jakobsen Brevik
- Cermaq Group AS, Dronning Eufemiasgate 16, Oslo, Norway
- Fish Disease Research Group, Department of Biology, University of Bergen, Thormøhlensgate 55, Bergen, Norway
| | - Kathleen Frisch
- Cermaq Group AS, Dronning Eufemiasgate 16, Oslo, Norway
- Fish Disease Research Group, Department of Biology, University of Bergen, Thormøhlensgate 55, Bergen, Norway
| | - Kuninori Watanabe
- Fish Disease Research Group, Department of Biology, University of Bergen, Thormøhlensgate 55, Bergen, Norway
| | | | - Are Nylund
- Fish Disease Research Group, Department of Biology, University of Bergen, Thormøhlensgate 55, Bergen, Norway
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Fernández-Álvarez C, Torres-Corral Y, Saltos-Rosero N, Santos Y. MALDI-TOF mass spectrometry for rapid differentiation of Tenacibaculum species pathogenic for fish. Appl Microbiol Biotechnol 2017; 101:5377-5390. [DOI: 10.1007/s00253-017-8324-3] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2016] [Revised: 03/29/2017] [Accepted: 04/29/2017] [Indexed: 11/24/2022]
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28
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Viver T, Orellana LH, Hatt JK, Urdiain M, Díaz S, Richter M, Antón J, Avian M, Amann R, Konstantinidis KT, Rosselló-Móra R. The low diverse gastric microbiome of the jellyfish Cotylorhiza tuberculata is dominated by four novel taxa. Environ Microbiol 2017; 19:3039-3058. [PMID: 28419691 DOI: 10.1111/1462-2920.13763] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2017] [Accepted: 04/10/2017] [Indexed: 01/06/2023]
Abstract
Cotylorhiza tuberculata is an important scyphozoan jellyfish producing population blooms in the Mediterranean probably due to pelagic ecosystem's decay. Its gastric cavity can serve as a simple model of microbial-animal digestive associations, yet poorly characterized. Using state-of-the-art metagenomic population binning and catalyzed reporter deposition fluorescence in situ hybridization (CARD-FISH), we show that only four novel clonal phylotypes were consistently associated with multiple jellyfish adults. Two affiliated close to Spiroplasma and Mycoplasma genera, one to chlamydial 'Candidatus Syngnamydia', and one to bacteroidetal Tenacibaculum, and were at least one order of magnitude more abundant than any other bacteria detected. Metabolic modelling predicted an aerobic heterotrophic lifestyle for the chlamydia, which were found intracellularly in Onychodromopsis-like ciliates. The Spiroplasma-like organism was predicted to be an anaerobic fermenter associated to some jellyfish cells, whereas the Tenacibaculum-like as free-living aerobic heterotroph, densely colonizing the mesogleal axis inside the gastric filaments. The association between the jellyfish and its reduced microbiome was close and temporally stable, and possibly related to food digestion and protection from pathogens. Based on the genomic and microscopic data, we propose three candidate taxa: 'Candidatus Syngnamydia medusae', 'Candidatus Medusoplasma mediterranei' and 'Candidatus Tenacibaculum medusae'.
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Affiliation(s)
- Tomeu Viver
- Mediterranean Institute for Advanced Studies (IMEDEA; CSIC-UIB), Marine Microbiology Group, Esporles, E-07190, Spain
| | - Luis H Orellana
- School of Civil and Environmental Engineering, Georgia Institute of Technology, 311 Ferst Dr. NW, Atlanta, GA, 30332, USA
| | - Janet K Hatt
- School of Civil and Environmental Engineering, Georgia Institute of Technology, 311 Ferst Dr. NW, Atlanta, GA, 30332, USA
| | - Mercedes Urdiain
- Mediterranean Institute for Advanced Studies (IMEDEA; CSIC-UIB), Marine Microbiology Group, Esporles, E-07190, Spain
| | - Sara Díaz
- Mediterranean Institute for Advanced Studies (IMEDEA; CSIC-UIB), Marine Microbiology Group, Esporles, E-07190, Spain
| | | | - Josefa Antón
- Department of Physiology, Genetics and Microbiology, and Multidisciplinary Institute for Environmental Studies Ramon Margalef, University of Alicante, Alicante, Spain
| | - Massimo Avian
- Department of Life Science, University of Trieste, Via L. Giorgieri 10, Trieste, 34127, Italy
| | - Rudolf Amann
- Department of Molecular Ecology, Max-Planck-Institut für Marine Mikrobiologie, Bremen, D-28359, Germany
| | - Konstantinos T Konstantinidis
- School of Civil and Environmental Engineering, Georgia Institute of Technology, 311 Ferst Dr. NW, Atlanta, GA, 30332, USA.,School of Biological Sciences, Georgia Institute of Technology, 950 Atlantic Dr. NW, Atlanta, GA, 30332, USA
| | - Ramon Rosselló-Móra
- Mediterranean Institute for Advanced Studies (IMEDEA; CSIC-UIB), Marine Microbiology Group, Esporles, E-07190, Spain
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29
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Blackett M, Lucas CH, Cook K, Licandro P. Occurrence of the siphonophore Muggiaea atlantica in Scottish coastal waters: source or sink? JOURNAL OF PLANKTON RESEARCH 2017; 39:122-137. [PMID: 28566798 PMCID: PMC5444107 DOI: 10.1093/plankt/fbw082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/01/2016] [Revised: 10/24/2016] [Accepted: 11/04/2016] [Indexed: 06/07/2023]
Abstract
We applied the concept of source-sink dynamics to investigate a recent (1999-2013) increase in the occurrence of the siphonophore Muggiaea atlantica in Scottish coastal waters. Our aim was to determine whether this change represented the establishment of resident populations (i.e. "sources"), or transient populations reliant on immigration (i.e. "sinks"). First, we show that local production was not always sufficient to account for recruitment (a "source" prerequisite), suggesting reliance on immigration (a "sink" prerequisite). Using variation partitioning, we then discriminated between the exclusive effects of immigration [indexed by the European Slope Current (ESC)] and local production (indexed by local sea temperature and food availability). On the west coast (Loch Ewe), interannual variability in the species' abundance was determined by, in order of increasing importance: (i) suitable local environmental conditions (13%); (ii) the role of the ESC in modulating these conditions (20%); and (iii) immigration via the ESC (29%). These results provided a strong indication that Loch Ewe represents a sink habitat for M. atlantica. However, on the east coast (Stonehaven) our results were less conclusive, probably due to the less direct influence of the ESC. For both locations, we suggest that low winter temperatures prevented overwintering, necessitating annual re-colonization via immigration.
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Affiliation(s)
- Michael Blackett
- Ocean and Earth Science, National Oceanography CentreUniversity of Southampton Waterfront Campus, European Way, Southampton, SO14 3ZH, UK
- Sir Alister Hardy Foundation for Ocean Science, The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK
| | - Cathy H. Lucas
- Ocean and Earth Science, National Oceanography CentreUniversity of Southampton Waterfront Campus, European Way, Southampton, SO14 3ZH, UK
| | - Katherine Cook
- Marine Scotland Science, Marine Laboratory, 375 Victoria Road, Aberdeen Ab11 9DB, UK
| | - Priscilla Licandro
- Sir Alister Hardy Foundation for Ocean Science, The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK
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30
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Fernández-Álvarez C, González SF, Santos Y. Development of a SYBR green I real-time PCR assay for specific identification of the fish pathogen Aeromonas salmonicida subspecies salmonicida. Appl Microbiol Biotechnol 2016; 100:10585-10595. [PMID: 27838837 DOI: 10.1007/s00253-016-7929-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2016] [Revised: 10/03/2016] [Accepted: 10/10/2016] [Indexed: 10/20/2022]
Abstract
A SYBR Green I real-time polymerase chain reaction protocol for specific detection of the fish pathogen Aeromonas salmonicida subsp. salmonicida was developed and validated for rapid diagnosis of typical furunculosis. The sequence of the aopO gene of A. salmonicida subsp. salmonicida, which encodes for a serine/threonine protein kinase linked to virulence, was chosen for primer design. The selected primers amplified a 119-bp internal fragment of the aopO gene. The specificity test proved that 100 % (40/40) of the A. salmonicida subsp. salmonicida strains tested showed a positive amplification with subspecies-specific melting temperatures (Tm) of 80.75 ± 0.35 °C. Atypical A. salmonicida subspecies and other non-related bacterial fish pathogens did not amplify or showed unspecific melting profiles, except for one strain of A. salmonicida subsp. achromogenes and one strain of A. salmonicida subsp. smithia. The detection sensitivity was 21 fg of purified bacterial DNA per reaction, corresponding to 1-2 bacterial cells and 6-60 bacteria per reaction for seeded kidney and blood. The assay was highly reproducible with low variation coefficient values for intra-run and inter-run assays. The assay also allowed the specific detection of A. salmonicida subsp. salmonicida in tissues of fish naturally and experimentally infected. No amplification was detected when tissues from healthy fish or fish affected by other diseases were tested. The SYBR Green real-time PCR and melt curve analysis developed in this study is a rapid and accurate method for the specific identification of A. salmonicida subsp. salmonicida isolates and its detection on tissues of fish affected by furunculosis.
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Affiliation(s)
- Clara Fernández-Álvarez
- Departamento de Microbiología y Parasitología, Edificio CIBUS Facultad de Biología and Instituto de Investigación y Análisis Alimentario, Universidad de Santiago de Compostela, 15782, Santiago de Compostela, Spain.
| | - Santiago F González
- Institute for Research in Biomedicine, Università della Suvizzera Italiana, 6500, Bellinzona, Switzerland
| | - Ysabel Santos
- Departamento de Microbiología y Parasitología, Edificio CIBUS Facultad de Biología and Instituto de Investigación y Análisis Alimentario, Universidad de Santiago de Compostela, 15782, Santiago de Compostela, Spain
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31
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Marcos-López M, Mitchell SO, Rodger HD. Pathology and mortality associated with the mauve stinger jellyfish Pelagia noctiluca in farmed Atlantic salmon Salmo salar L. JOURNAL OF FISH DISEASES 2016; 39:111-115. [PMID: 24909954 DOI: 10.1111/jfd.12267] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2014] [Revised: 04/11/2014] [Accepted: 05/07/2014] [Indexed: 06/03/2023]
Affiliation(s)
| | - S O Mitchell
- Vet-Aqua International, Oranmore Co, Galway, Ireland
| | - H D Rodger
- Vet-Aqua International, Oranmore Co, Galway, Ireland
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32
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Cortés-Lara S, Urdiain M, Mora-Ruiz M, Prieto L, Rosselló-Móra R. Prokaryotic microbiota in the digestive cavity of the jellyfish Cotylorhiza tuberculata. Syst Appl Microbiol 2015. [DOI: 10.1016/j.syapm.2015.07.001] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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33
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Multilocus sequence analysis of the marine bacterial genus Tenacibaculum suggests parallel evolution of fish pathogenicity and endemic colonization of aquaculture systems. Appl Environ Microbiol 2014; 80:5503-14. [PMID: 24973065 DOI: 10.1128/aem.01177-14] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The genus Tenacibaculum, a member of the family Flavobacteriaceae, is an abundant component of marine bacterial ecosystems that also hosts several fish pathogens, some of which are of serious concern for marine aquaculture. Here, we applied multilocus sequence analysis (MLSA) to 114 representatives of most known species in the genus and of the worldwide diversity of the major fish pathogen Tenacibaculum maritimum. Recombination hampers precise phylogenetic reconstruction, but the data indicate intertwined environmental and pathogenic lineages, which suggests that pathogenicity evolved independently in several species. At lower phylogenetic levels recombination is also important, and the species T. maritimum constitutes a cohesive group of isolates. Importantly, the data reveal no trace of long-distance dissemination that could be linked to international fish movements. Instead, the high number of distinct genotypes suggests an endemic distribution of strains. The MLSA scheme and the data described in this study will help in monitoring Tenacibaculum infections in marine aquaculture; we show, for instance, that isolates from tenacibaculosis outbreaks in Norwegian salmon farms are related to T. dicentrarchi, a recently described species.
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Avendaño-Herrera R, Maldonado JP, Tapia-Cammas D, Feijóo CG, Calleja F, Toranzo AE. PCR protocol for detection of Vibrio ordalii by amplification of the vohB (hemolysin) gene. DISEASES OF AQUATIC ORGANISMS 2014; 107:223-234. [PMID: 24429473 DOI: 10.3354/dao02684] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Vibrio ordalii is the causative agent of atypical vibriosis and has the potential to cause severe losses in salmonid aquaculture. To prevent and control outbreaks, a rapid, reproducible, sensitive, and effective diagnostic method is needed. We evaluated a new conventional polymerase chain reaction (PCR) and real-time PCR (qPCR) protocol using a primer set (VohB_Fw-VohB_Rv) designed to amplify a 112 bp fragment flanking the vohB gene (coding for hemolysin production), against 24 V. ordalii strains isolated from different fish species, the V. ordalii type strain, and 42 representative related and unrelated bacterial species. The primer set was species-specific, recognizing all V. ordalii strains evaluated, with no cross-reaction with the other bacterial species. A sensitivity of 103 copies of the vohB gene was obtained with a standard curve. When the VohB_Fw-VohB_Rv qPCR protocol was applied to Atlantic salmon seeded tissues (kidney, liver, spleen, and muscle), the detection limit ranged from 5.27 × 102 to 4.13 × 103 V. ordalii CFU ml-1, i.e. 62 to 145 copies of the vohB gene, using the previously calculated standard curve. The conventional PCR also detected V. ordalii, but the total reaction time was 1 h longer. When the qPCR protocol was applied to naturally infected cage-cultured Atlantic salmon samples, 5 of 8 fish tested positive for V. ordalii, but only one of them was diagnosed as positive by direct cultivation on agar. We conclude that the PCR protocol evaluated is fast, specific, and sensitive enough to detect V. ordalii in infected tissues and is an important tool for secure diagnosis of atypical vibriosis, and is therefore helpful for the control of the disease through the prompt detection within fish populations.
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Affiliation(s)
- R Avendaño-Herrera
- Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Departamento de Ciencias Biológicas, Facultad de Ciencias Biológicas, Universidad Andrés Bello, Viña del Mar, Chile
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35
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Buller N. Aquatic animals; endemic and exotic bacterial pathogens. MICROBIOLOGY AUSTRALIA 2013. [DOI: 10.1071/ma13007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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36
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Fringuelli E, Gordon AW, Rodger H, Welsh MD, Graham DA. Detection of Neoparamoeba perurans by duplex quantitative Taqman real-time PCR in formalin-fixed, paraffin-embedded Atlantic salmonid gill tissues. JOURNAL OF FISH DISEASES 2012; 35:711-724. [PMID: 22804799 DOI: 10.1111/j.1365-2761.2012.01395.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
The development and the application of a quantitative duplex real-time PCR for the detection of Neoparamoeba perurans and the elongation factor α 1 gene (ELF) of Atlantic salmon, Salmo salar L., and rainbow trout, Oncorhynchus mykiss (Walbaum), are described. A set of primers and probe was designed to amplify a 139-bp fragment specific to the N. perurans 18S rRNA gene. The test was shown to be very sensitive, being able to detect as little as 13.4 DNA copies per μL corresponding to 0.15 fg of template DNA. In addition, the reaction that detected N. perurans was found to have a high degree of repeatability and reproducibility, to have a linear dynamic range (R(2 ) = 0.999) extending over 5 log(10) dilutions and to have a high efficiency (104%). The assay was applied to DNA samples extracted from 48 formalin-fixed, paraffin-embedded (FFPE) salmon gill tissues showing varying degrees of gill histopathology and amoebic gill disease (AGD)-type histopathology ranging from absent to severe (each scored 0-3). Neoparamoeba perurans DNA was detected in all the blocks where AGD-type histopathology was diagnosed microscopically and in 43.6% of the blocks showing signs of gill pathology. The association between parasitic load and gill histopathology and AGD-type histopathology severity was also investigated. This study also describes the development and the application of a second real-time PCR for the generic detection of Neoparamoeba spp., Page, 1987. A set of primers and probe conserved among the Neoparamoeba spp. was designed to amplify a 150-bp fragment within the 18S rRNA gene. Applied to N. perurans-negative gill tissues, the method was used to exclude the presence of other Neoparamoeba spp. in those blocks where gill pathology was observed microscopically.
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Affiliation(s)
- E Fringuelli
- Veterinary Sciences Division, Agri-food and Biosciences Institute of Northern Ireland, Belfast, UK.
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