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Rajapakshe RPVGSW, Tomlinson S, Tudor EP, Turner SR, Elliott CP, Lewandrowski W. Same, same, but different: dissimilarities in the hydrothermal germination performance of range-restricted endemics emerge despite microclimatic similarities. CONSERVATION PHYSIOLOGY 2024; 12:coae009. [PMID: 38487732 PMCID: PMC10939308 DOI: 10.1093/conphys/coae009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Revised: 01/17/2024] [Accepted: 01/24/2024] [Indexed: 03/17/2024]
Abstract
Seed germination responses for most narrow-range endemic species are poorly understood, imperilling their conservation management in the face of warming and drying terrestrial ecosystems. We quantified the realized microclimatic niches and the hydrothermal germination thresholds in four threatened taxa (Tetratheca erubescens, Tetratheca harperi, Tetratheca paynterae subsp. paynterae and Tetratheca aphylla subsp. aphylla) that are restricted to individual Banded Ironstone Formations in Western Australia. While T. aphylla subsp. aphylla largely failed to germinate in our trials, all other species demonstrated extended hydrothermal time accumulation (186-500°C MPa days), cool minimum temperatures (7.8-8.5°C), but broad base water potential thresholds (-2.46 to -5.41 MPa) under which germination occurred. These slow germination dynamics are suggestive of cool and wet winter months, where soil moisture is retained to a greater capacity in local microsites where these species occur, rather than the warmer and drier conditions in the surrounding arid environment. Hydrothermal time-to-event modelling showed that each species occupied unique hydrothermal germination niches, which correspond with the microclimatic differences the species are exposed to. Our results provide a baseline understanding for environmental and germination thresholds that govern the recruitment, and ultimately the population structure and persistence, of these short-range endemic plants. In addition, our results can aid future conservation, as well as restoration actions such as translocation to bolster population numbers and to mitigate against losses due to anthropogenic disturbance and global environmental change.
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Affiliation(s)
- Rajapakshe P V G S W Rajapakshe
- ARC Centre for Mine Site Restoration, Curtin University, Bentley, 6102, Australia
- School of Molecular and Life Sciences, Curtin University, Bentley, 6102, Australia
- Kings Park Science, Department of Biodiversity, Conservation and Attractions, Kings Park, 6005, Australia
| | - Sean Tomlinson
- School of Molecular and Life Sciences, Curtin University, Bentley, 6102, Australia
- School of Biological Sciences, University of Adelaide, Adelaide, 5000, Australia
| | - Emily P Tudor
- Kings Park Science, Department of Biodiversity, Conservation and Attractions, Kings Park, 6005, Australia
- School of Biological Sciences, University of Western Australia, Crawley, 6009, Australia
| | - Shane R Turner
- ARC Centre for Mine Site Restoration, Curtin University, Bentley, 6102, Australia
- School of Molecular and Life Sciences, Curtin University, Bentley, 6102, Australia
| | - Carole P Elliott
- Kings Park Science, Department of Biodiversity, Conservation and Attractions, Kings Park, 6005, Australia
- School of Biological Sciences, University of Western Australia, Crawley, 6009, Australia
| | - Wolfgang Lewandrowski
- Kings Park Science, Department of Biodiversity, Conservation and Attractions, Kings Park, 6005, Australia
- School of Biological Sciences, University of Western Australia, Crawley, 6009, Australia
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2
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Ualiyeva D, Liu J, Dujsebayeva T, Li J, Tian L, Cai B, Zeng X, Guo X. Genetic Structure and Population History of the Zaisan Toad-Headed Agama ( Phrynocephalus melanurus) Inferred from Mitochondrial DNA. Animals (Basel) 2024; 14:209. [PMID: 38254378 PMCID: PMC10812424 DOI: 10.3390/ani14020209] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2023] [Revised: 12/25/2023] [Accepted: 01/05/2024] [Indexed: 01/24/2024] Open
Abstract
The agamid lizard Phrynocephalus melanurus is restricted to Northwest China (Dzungar Basin) and the adjacent Eastern Kazakhstan (Zaisan and Alakol basins). To elucidate the phylogeography of P. melanurus, we obtained the mitochondrial DNA COI segments of 175 sampled lizards from 44 localities across the whole distribution. Phylogenetic analyses revealed two main Clades comprising five geographically structured lineages (I, IIa, IIb1, IIb2, and IIb3) that fit an isolation-by-distance (IBD) model. The divergence from the most recent common ancestor was dated to ~1.87 million years ago (Ma). Demographic analyses demonstrated lineage-specific response to past climate change: stable population for Clade I, Subclade IIb1; past population expansion for IIb3 since 0.18 Ma, respectively. Bayesian phylogeographic diffusion analyses detected initial spreading at the Saur Mount vicinity, approximately 1.8 Ma. Historical species distribution model (SDM) projected expansion of the suitable habitat in the last interglacial and shift and contraction in the last glacial maximum and Holocene epochs. The SDM predicted a drastic reduction in suitable area throughout the range as a response to future climate change. Our findings suggest that the evolution of P. melanurus followed a parapatric divergence with subsequent dispersal and adaptation to cold and dry environments during the Quaternary. Overall, this work improves our understanding of the lineage diversification and population dynamics of P. melanurus, providing further insights into the evolutionary processes that occurred in Northwest China and adjacent Eastern Kazakhstan.
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Affiliation(s)
- Daniya Ualiyeva
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (D.U.); (J.L.); (L.T.); (B.C.)
- University of Chinese Academy of Sciences, Beijing 100049, China
- Laboratory of Ornithology and Herpetology, Institute of Zoology CS MES RK, 93 al-Farabi Avenue, Almaty 050060, Kazakhstan;
| | - Jinlong Liu
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (D.U.); (J.L.); (L.T.); (B.C.)
| | - Tatjana Dujsebayeva
- Laboratory of Ornithology and Herpetology, Institute of Zoology CS MES RK, 93 al-Farabi Avenue, Almaty 050060, Kazakhstan;
| | - Jun Li
- College of Life Science and Technology, Xinjiang University, Urumqi 830046, China;
| | - Lili Tian
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (D.U.); (J.L.); (L.T.); (B.C.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Bo Cai
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (D.U.); (J.L.); (L.T.); (B.C.)
| | - Xiaomao Zeng
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (D.U.); (J.L.); (L.T.); (B.C.)
| | - Xianguang Guo
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (D.U.); (J.L.); (L.T.); (B.C.)
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3
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Cartron JLE, Triepke FJ, Stahlecker DW, Arsenault DP, Ganey JL, Hathcock CD, Thompson HK, Cartron MC, Calhoun KC. Climate Change Habitat Model Forecasts for Eight Owl Species in the Southwestern US. Animals (Basel) 2023; 13:3770. [PMID: 38136807 PMCID: PMC10740657 DOI: 10.3390/ani13243770] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Revised: 11/26/2023] [Accepted: 11/28/2023] [Indexed: 12/24/2023] Open
Abstract
The high-resolution forecasting of vegetation type shifts may prove essential in anticipating and mitigating the impacts of future climate change on bird populations. Here, we used the US Forest Service Ecological Response Unit (ERU) classification to develop and assess vegetation-based breeding habitat profiles for eight owl species occurring in the foothills and mountains of the Southwestern US. Shifts in mapped habitat were forecast using an ecosystem vulnerability model based on the pre-1990 climate envelopes of ERUs and the Intergovernmental Panel on Climate Change's (IPCC) A1B moderate-emission scenario for the future climate. For five of the eight owl species, the regional breeding habitat extent was projected to decline by at least 60% by 2090. Three species, the boreal owl (Aegolius funereus; at the trailing edge of its distribution), flammulated owl (Psiloscops flammeolus), and northern pygmy-owl (Glaucidium gnoma), were projected to experience the steepest habitat loss rates of 85%, 85%, and 76%, respectively. Projected vegetation shifts overlaid with well-documented flammulated owl breeding populations showed the complete or near complete loss of habitat by 2090 in areas of montane forest currently supporting dense aggregations of owl territories. Generalist or lower-elevation owl species were predicted to be less impacted, while, for the whiskered screech-owl (Megascops trichopsis), the contraction of the current habitat was nearly offset by a projected northward expansion. In general, the results of this study suggest high exposure to climate change impacts for the upper-elevation forest owls of semi-arid Southwestern North America. Long-distance migration and low natal philopatry may prove important to some montane owl populations in adapting to the regional loss of habitat.
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Affiliation(s)
| | - F. Jack Triepke
- Department of Biology, University of New Mexico, Albuquerque, NM 87131, USA
- U.S. Department of Agriculture, Forest Service, Southwestern Region, Albuquerque, NM 87102, USA
| | | | | | - Joseph L. Ganey
- U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station, Flagstaff, AZ 86001, USA
| | | | | | - Matthieu C. Cartron
- Department of Statistics, North Carolina State University, Raleigh, NC 27695, USA
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4
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Holtum JAM. The diverse diaspora of CAM: a pole-to-pole sketch. ANNALS OF BOTANY 2023; 132:597-625. [PMID: 37303205 PMCID: PMC10800000 DOI: 10.1093/aob/mcad067] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Revised: 12/13/2022] [Accepted: 06/09/2023] [Indexed: 06/13/2023]
Abstract
BACKGROUND Crassulacean acid metabolism (CAM) photosynthesis is a successful adaptation that has evolved often in angiosperms, gymnosperms, ferns and lycophytes. Present in ~5 % of vascular plants, the CAM diaspora includes all continents apart from Antarctica. Species with CAM inhabit most landscapes colonized by vascular plants, from the Arctic Circle to Tierra del Fuego, from below sea level to 4800 m a.s.l., from rainforests to deserts. They have colonized terrestrial, epiphytic, lithophytic, palustrine and aquatic systems, developing perennial, annual or geophyte strategies that can be structurally arborescent, shrub, forb, cladode, epiphyte, vine or leafless with photosynthetic roots. CAM can enhance survival by conserving water, trapping carbon, reducing carbon loss and/or via photoprotection. SCOPE This review assesses the phylogenetic diversity and historical biogeography of selected lineages with CAM, i.e. ferns, gymnosperms and eumagnoliids, Orchidaceae, Bromeliaceae, Crassulaceae, Euphorbiaceae, Aizoaceae, Portulacineae (Montiaceae, Basellaceae, Halophytaceae, Didiereaceae, Talinaceae, Portulacaceae, Anacampserotaceae and Cactaceae) and aquatics. CONCLUSIONS Most extant CAM lineages diversified after the Oligocene/Miocene, as the planet dried and CO2 concentrations dropped. Radiations exploited changing ecological landscapes, including Andean emergence, Panamanian Isthmus closure, Sundaland emergence and submergence, changing climates and desertification. Evidence remains sparse for or against theories that CAM biochemistry tends to evolve before pronounced changes in anatomy and that CAM tends to be a culminating xerophytic trait. In perennial taxa, any form of CAM can occur depending upon the lineage and the habitat, although facultative CAM appears uncommon in epiphytes. CAM annuals lack strong CAM. In CAM annuals, C3 + CAM predominates, and inducible or facultative CAM is common.
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Affiliation(s)
- Joseph A M Holtum
- College of Science and Engineering, James Cook University, Townsville, QLD4811, Australia
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5
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Ranawaka B, An J, Lorenc MT, Jung H, Sulli M, Aprea G, Roden S, Llaca V, Hayashi S, Asadyar L, LeBlanc Z, Ahmed Z, Naim F, de Campos SB, Cooper T, de Felippes FF, Dong P, Zhong S, Garcia-Carpintero V, Orzaez D, Dudley KJ, Bombarely A, Bally J, Winefield C, Giuliano G, Waterhouse PM. A multi-omic Nicotiana benthamiana resource for fundamental research and biotechnology. NATURE PLANTS 2023; 9:1558-1571. [PMID: 37563457 PMCID: PMC10505560 DOI: 10.1038/s41477-023-01489-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 07/11/2023] [Indexed: 08/12/2023]
Abstract
Nicotiana benthamiana is an invaluable model plant and biotechnology platform with a ~3 Gb allotetraploid genome. To further improve its usefulness and versatility, we have produced high-quality chromosome-level genome assemblies, coupled with transcriptome, epigenome, microRNA and transposable element datasets, for the ubiquitously used LAB strain and a related wild accession, QLD. In addition, single nucleotide polymorphism maps have been produced for a further two laboratory strains and four wild accessions. Despite the loss of five chromosomes from the ancestral tetraploid, expansion of intergenic regions, widespread segmental allopolyploidy, advanced diploidization and evidence of recent bursts of Copia pseudovirus (Copia) mobility not seen in other Nicotiana genomes, the two subgenomes of N. benthamiana show large regions of synteny across the Solanaceae. LAB and QLD have many genetic, metabolic and phenotypic differences, including disparate RNA interference responses, but are highly interfertile and amenable to genome editing and both transient and stable transformation. The LAB/QLD combination has the potential to be as useful as the Columbia-0/Landsberg errecta partnership, utilized from the early pioneering days of Arabidopsis genomics to today.
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Affiliation(s)
- Buddhini Ranawaka
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, Queensland, Australia
- ARC Centre of Excellence for Plant Success in Nature & Agriculture, Brisbane, Queensland, Australia
| | - Jiyuan An
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, Queensland, Australia.
- ARC Centre of Excellence for Plant Success in Nature & Agriculture, Brisbane, Queensland, Australia.
| | - Michał T Lorenc
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, Queensland, Australia
| | - Hyungtaek Jung
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, Queensland, Australia
- Centre for Animal Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Brisbane, Queensland, Australia
| | - Maria Sulli
- Italian National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Casaccia Research Centre, Rome, Italy
| | - Giuseppe Aprea
- Italian National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Casaccia Research Centre, Rome, Italy
| | - Sally Roden
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, Queensland, Australia
- ARC Centre of Excellence for Plant Success in Nature & Agriculture, Brisbane, Queensland, Australia
| | - Victor Llaca
- Genomics Technologies, Corteva Agriscience, Johnston, IA, USA
| | - Satomi Hayashi
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, Queensland, Australia
- ARC Centre of Excellence for Plant Success in Nature & Agriculture, Brisbane, Queensland, Australia
| | - Leila Asadyar
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, Queensland, Australia
- ARC Centre of Excellence for Plant Success in Nature & Agriculture, Brisbane, Queensland, Australia
| | - Zacharie LeBlanc
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, Queensland, Australia
| | - Zuba Ahmed
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, Queensland, Australia
- ARC Centre of Excellence for Plant Success in Nature & Agriculture, Brisbane, Queensland, Australia
| | - Fatima Naim
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, Queensland, Australia
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, Western Australia, Australia
| | - Samanta Bolzan de Campos
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, Queensland, Australia
| | - Tal Cooper
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, Queensland, Australia
| | - Felipe F de Felippes
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, Queensland, Australia
| | - Pengfei Dong
- State Key Laboratory of Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China
| | - Silin Zhong
- State Key Laboratory of Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China
| | - Victor Garcia-Carpintero
- Instituto de Biología Molecular y Celular de Plantas (IBMCP), Consejo Superior de Investigaciones Científicas (CSIC), Universidad Politècnica de Valencia, Valencia, Spain
| | - Diego Orzaez
- Instituto de Biología Molecular y Celular de Plantas (IBMCP), Consejo Superior de Investigaciones Científicas (CSIC), Universidad Politècnica de Valencia, Valencia, Spain
| | - Kevin J Dudley
- School of Biology and Environmental Science, Queensland University of Technology (QUT), Brisbane, Queensland, Australia
- QUT Central Analytical Research Facility, Queensland University of Technology (QUT), Brisbane, Queensland, Australia
| | - Aureliano Bombarely
- Instituto de Biología Molecular y Celular de Plantas (IBMCP), Consejo Superior de Investigaciones Científicas (CSIC), Universidad Politècnica de Valencia, Valencia, Spain
- Università degli Studi di Milano, Milan, Italy
| | - Julia Bally
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, Queensland, Australia
- ARC Centre of Excellence for Plant Success in Nature & Agriculture, Brisbane, Queensland, Australia
| | - Christopher Winefield
- ARC Centre of Excellence for Plant Success in Nature & Agriculture, Brisbane, Queensland, Australia.
- Department of Wine Food and Molecular Biosciences, Lincoln University, Lincoln, New Zealand.
| | - Giovanni Giuliano
- Italian National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Casaccia Research Centre, Rome, Italy
| | - Peter M Waterhouse
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology (QUT), Brisbane, Queensland, Australia.
- ARC Centre of Excellence for Plant Success in Nature & Agriculture, Brisbane, Queensland, Australia.
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Mather CC, Lampinen HM, Tucker M, Leopold M, Dogramaci S, Raven M, Gilkes RJ. Microbial influence on dolomite and authigenic clay mineralisation in dolocrete profiles of NW Australia. GEOBIOLOGY 2023; 21:644-670. [PMID: 36973880 DOI: 10.1111/gbi.12555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 02/02/2023] [Accepted: 03/12/2023] [Indexed: 06/18/2023]
Abstract
Dolomite (CaMg(CO3 )2 ) precipitation is kinetically inhibited at surface temperatures and pressures. Experimental studies have demonstrated that microbial extracellular polymeric substances (EPS) as well as certain clay minerals may catalyse dolomite precipitation. However, the combined association of EPS with clay minerals and dolomite and their occurrence in the natural environment are not well documented. We investigated the mineral and textural associations within groundwater dolocrete profiles from arid northwest Australia. Microbial EPS is a site of nucleation for both dolomite and authigenic clay minerals in this Late Miocene to Pliocene dolocrete. Dolomite crystals are commonly encased in EPS alveolar structures, which have been mineralised by various clay minerals, including montmorillonite, trioctahedral smectite and palygorskite-sepiolite. Observations of microbial microstructures and their association with minerals resemble textures documented in various lacustrine and marine microbialites, indicating that similar mineralisation processes may have occurred to form these dolocretes. EPS may attract and bind cations that concentrate to form the initial particles for mineral nucleation. The dolomite developed as nanocrystals, likely via a disordered precursor, which coalesced to form larger micritic crystal aggregates and rhombic crystals. Spheroidal dolomite textures, commonly with hollow cores, are also present and may reflect the mineralisation of a biofilm surrounding coccoid bacterial cells. Dolomite formation within an Mg-clay matrix is also observed, more commonly within a shallow pedogenic horizon. The ability of the negatively charged surfaces of clay and EPS to bind and dewater Mg2+ , as well as the slow diffusion of ions through a viscous clay or EPS matrix, may promote the incorporation of Mg2+ into the mineral and overcome the kinetic effects to allow disordered dolomite nucleation and its later growth. The results of this study show that the precipitation of clay and carbonate minerals in alkaline environments may be closely associated and can develop from the same initial amorphous Ca-Mg-Si-rich matrix within EPS. The abundance of EPS preserved within the profiles is evidence of past microbial activity. Local fluctuations in chemistry, such as small increases in alkalinity, associated with the degradation of EPS or microbial activity, were likely important for both clay and dolomite formation. Groundwater environments may be important and hitherto understudied settings for microbially influenced mineralisation and for low-temperature dolomite precipitation.
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Affiliation(s)
- Caroline C Mather
- School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, Western Australia, 6009, Australia
- School of Social Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, Western Australia, 6009, Australia
| | - Heta M Lampinen
- Commonwealth Scientific and Industrial Research Organisation, Mineral Resources, 26 Dick Perry Avenue, Kensington, Western Australia, 6151, Australia
| | - Maurice Tucker
- School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, UK
| | - Matthias Leopold
- UWA-School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, Western Australia, 6009, Australia
| | - Shawan Dogramaci
- School of Earth Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, Western Australia, 6009, Australia
- National Centre for Groundwater Research and Training & College of Science and Engineering, Flinders University, Adelaide, South Australia, 5042, Australia
| | - Mark Raven
- Commonwealth Scientific and Industrial Research Organisation, Mineralogical Services, Waite Campus, Urrbrae, South Australia, 5064, Australia
| | - Robert J Gilkes
- UWA-School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, Western Australia, 6009, Australia
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Shi CM, Zhang XS, Liu L, Ji YJ, Zhang DX. Phylogeography of the desert scorpion illuminates a route out of Central Asia. Curr Zool 2023; 69:442-455. [PMID: 37614924 PMCID: PMC10443618 DOI: 10.1093/cz/zoac061] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Accepted: 07/27/2022] [Indexed: 08/25/2023] Open
Abstract
A comprehensive understanding of phylogeography requires the integration of knowledge across different organisms, ecosystems, and geographic regions. However, a critical knowledge gap exists in the arid biota of the vast Asian drylands. To narrow this gap, here we test an "out-of-Central Asia" hypothesis for the desert scorpion Mesobuthus mongolicus by combining Bayesian phylogeographic reconstruction and ecological niche modeling. Phylogenetic analyses of one mitochondrial and three nuclear loci and molecular dating revealed that M. mongolicus represents a coherent lineage that diverged from its most closely related lineage in Central Asia about 1.36 Ma and underwent radiation ever since. Bayesian phylogeographic reconstruction indicated that the ancestral population dispersed from Central Asia gradually eastward to the Gobi region via the Junggar Basin, suggesting that the Junggar Basin has severed as a corridor for Quaternary faunal exchange between Central Asia and East Asia. Two major dispersal events occurred probably during interglacial periods (around 0.8 and 0.4 Ma, respectively) when climatic conditions were analogous to present-day status, under which the scorpion achieved its maximum distributional range. M. mongolicus underwent demographic expansion during the Last Glacial Maximum, although the predicted distributional areas were smaller than those at present and during the Last Interglacial. Development of desert ecosystems in northwest China incurred by intensified aridification might have opened up empty habitats that sustained population expansion. Our results extend the spatiotemporal dimensions of trans-Eurasia faunal exchange and suggest that species' adaptation is an important determinant of their phylogeographic and demographic responses to climate changes.
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Affiliation(s)
- Cheng-Min Shi
- State Key Laboratory of North China Crop Improvement and Regulation, College of Plant Protection, Hebei Agricultural University, Baoding 071001, China
| | - Xue-Shu Zhang
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China
| | - Lin Liu
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China
| | - Ya-Jie Ji
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China
| | - De-Xing Zhang
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China
- University of Chinese Academy of Sciences, 19 Yuquan Road, Beijing 100049, China
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8
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Skeels A, Boschman LM, McFadden IR, Joyce EM, Hagen O, Jiménez Robles O, Bach W, Boussange V, Keggin T, Jetz W, Pellissier L. Paleoenvironments shaped the exchange of terrestrial vertebrates across Wallace's Line. Science 2023; 381:86-92. [PMID: 37410831 DOI: 10.1126/science.adf7122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Accepted: 06/01/2023] [Indexed: 07/08/2023]
Abstract
Faunal turnover in Indo-Australia across Wallace's Line is one of the most recognizable patterns in biogeography and has catalyzed debate about the role of evolutionary and geoclimatic history in biotic interchanges. Here, analysis of more than 20,000 vertebrate species with a model of geoclimate and biological diversification shows that broad precipitation tolerance and dispersal ability were key for exchange across the deep-time precipitation gradient spanning the region. Sundanian (Southeast Asian) lineages evolved in a climate similar to the humid "stepping stones" of Wallacea, facilitating colonization of the Sahulian (Australian) continental shelf. By contrast, Sahulian lineages predominantly evolved in drier conditions, hampering establishment in Sunda and shaping faunal distinctiveness. We demonstrate how the history of adaptation to past environmental conditions shapes asymmetrical colonization and global biogeographic structure.
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Affiliation(s)
- A Skeels
- Department of Environmental Systems Science, Ecosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, ETH Zurich, 8092 Zurich, Switzerland
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, 8903 Birmensdorf, Switzerland
- Research School of Biology, Australian National University, Canberra 0200, Australia
| | - L M Boschman
- Department of Earth Sciences, Utrecht University, 3584 CB Utrecht, Netherlands
| | - I R McFadden
- Department of Environmental Systems Science, Ecosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, ETH Zurich, 8092 Zurich, Switzerland
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, 8903 Birmensdorf, Switzerland
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, 1090 GE Amsterdam, Netherlands
| | - E M Joyce
- Systematics, Biodiversity and Evolution of Plants, Ludwig Maximilian University of Munich, 80331 Munich, Germany
| | - O Hagen
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, 04103 Leipzig, Germany
| | - O Jiménez Robles
- Research School of Biology, Australian National University, Canberra 0200, Australia
- Institute of Biology, École Normale Supérieure, 75005 Paris, France
| | - W Bach
- Department of Environmental Systems Science, Ecosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, ETH Zurich, 8092 Zurich, Switzerland
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, 8903 Birmensdorf, Switzerland
| | - V Boussange
- Department of Environmental Systems Science, Ecosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, ETH Zurich, 8092 Zurich, Switzerland
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, 8903 Birmensdorf, Switzerland
| | - T Keggin
- Department of Environmental Systems Science, Ecosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, ETH Zurich, 8092 Zurich, Switzerland
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, 8903 Birmensdorf, Switzerland
| | - W Jetz
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520, USA
- Center for Biodiversity and Global Change, Yale University, New Haven, CT 06520, USA
| | - L Pellissier
- Department of Environmental Systems Science, Ecosystems and Landscape Evolution, Institute of Terrestrial Ecosystems, ETH Zurich, 8092 Zurich, Switzerland
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, 8903 Birmensdorf, Switzerland
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9
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Green TA, Hutchings PA, Scarff FR, Tweedley JR, Calver MC. Research publications of Australia's natural history museums, 1981-2020: Enduring relevance in a changing world. PLoS One 2023; 18:e0287659. [PMID: 37352318 PMCID: PMC10289469 DOI: 10.1371/journal.pone.0287659] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2022] [Accepted: 06/12/2023] [Indexed: 06/25/2023] Open
Abstract
As a case study of the responses of natural history museums to changing scientific and funding environments, we analysed research publications of Australia's Natural History Museums (ANHMs) 1981-2020. Using Scopus, 9,923 relevant documents 1981-2020 were identified, mainly research papers but with a growing proportion of reviews. The number of documents published increased over tenfold from 39 (1981) to 553 (2020), likely driven by collaborations (rising from 28.5% of documents 1981-1985 to 87.2% of documents 2016-2020), contributions from retired staff, and volunteer support. The mean length of documents (pages) ranged from a low of 15.3 in 2001-2005 to a high of 17.4 in 1991-1995, but this statistically significant result was trivial in practical terms. The sources (i.e., journals, book titles, conference proceedings) in which ANHM authors published changed over time, with growing proportions of publications in journals covering molecular ecology/phylogenetics and biological conservation. We identified the major areas of study canvassed within the corpus of publications by developing structural topic models based on patterns of word use in document titles, abstracts and keyword lists. The topics discovered included study subjects traditional for natural history museums (new taxa, phylogeny, systematics, animal morphology, palaeontology, minerals), new directions (molecular genetics, ecology, biological conservation) and marine biology (probably reflecting Australia's large coastline). Most citations came from Australia, USA and UK, although in 2016-2020 only 27.9% of citing documents included an Australian author. Growth in numbers of documents and collaborations, as well as use of documents internationally over a period of great change in scientific and funding environments, indicate an enduring legacy of ANHM research, grounded on the intrinsic value of the collections.
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Affiliation(s)
- Tayla A. Green
- Environmental and Conservation Sciences, Murdoch University, Murdoch, Western Australia, Australia
| | - Pat A. Hutchings
- Australian Museum Research Institute, Australian Museum, Sydney, NSW, Australia
- Department of Biological Sciences, Macquarie University, North Ryde, Australia
| | - Fiona R. Scarff
- Environmental and Conservation Sciences, Murdoch University, Murdoch, Western Australia, Australia
| | - James R. Tweedley
- Environmental and Conservation Sciences, Murdoch University, Murdoch, Western Australia, Australia
| | - Michael C. Calver
- Environmental and Conservation Sciences, Murdoch University, Murdoch, Western Australia, Australia
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10
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Prideaux GJ, Warburton NM. A review of the late Cenozoic genus Bohra (Diprotodontia: Macropodidae) and the evolution of tree-kangaroos. Zootaxa 2023; 5299:1-95. [PMID: 37518576 DOI: 10.11646/zootaxa.5299.1.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Indexed: 08/01/2023]
Abstract
Tree-kangaroos of the genus Dendrolagus occupy forest habitats of New Guinea and extreme northeastern Australia, but their evolutionary history is poorly known. Descriptions in the 2000s of near-complete Pleistocene skeletons belonging to larger-bodied species in the now-extinct genus Bohra broadened our understanding of morphological variation in the group and have since helped us to identify unassigned fossils in museum collections, as well as to reassign species previously placed in other genera. Here we describe these fossils and analyse tree-kangaroo systematics via comparative osteology. Including B. planei sp. nov., B. bandharr comb. nov. and B. bila comb. nov., we recognise the existence of at least seven late Cenozoic species of Bohra, with a maximum of three in any one assemblage. All tree-kangaroos (Dendrolagina subtribe nov.) exhibit skeletal adaptations reflective of greater joint flexibility and manoeuvrability, particularly in the hindlimb, compared with other macropodids. The Pliocene species of Bohra retained the stepped calcaneocuboid articulation characteristic of ground-dwelling macropodids, but this became smoothed to allow greater hindfoot rotation in the later species of Bohra and in Dendrolagus. Tree-kangaroo diversification may have been tied to the expansion of forest habitats in the early Pliocene. Following the onset of late Pliocene aridity, some tree-kangaroo species took advantage of the consequent spread of more open habitats, becoming among the largest late Cenozoic tree-dwellers on the continent. Arboreal Old World primates and late Quaternary lemurs may be the closest ecological analogues to the species of Bohra.
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Affiliation(s)
- Gavin J Prideaux
- College of Science & Engineering; Flinders University; Bedford Park; South Australia 5042; Australia.
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11
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Cantley JT, Jordon-Thaden IE, Roche MD, Hayes D, Kate S, Martine CT. A Foundational Population Genetics Investigation of the Sexual Systems of Solanum (Solanaceae) in the Australian Monsoon Tropics Suggests Dioecious Taxa May Benefit from Increased Genetic Admixture via Obligate Outcrossing. PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12112200. [PMID: 37299179 DOI: 10.3390/plants12112200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Revised: 05/21/2023] [Accepted: 05/26/2023] [Indexed: 06/12/2023]
Abstract
Solanum section Leptostemonum is an ideal lineage to test the theoretical framework regarding proposed evolutionary benefits of outcrossing sexual systems in comparison to cosexuality. Theoretically, non-cosexual taxa should support more genetic diversity within populations, experience less inbreeding, and have less genetic structure due to a restricted ability to self-fertilize. However, many confounding factors present challenges for a confident inference that inherent differences in sexual systems influence observed genetic patterns among populations. This study provides a foundational baseline of the population genetics of several species of different sexual systems with the aim of generating hypotheses of any factor-including sexual system-that influences genetic patterns. Importantly, results indicate that dioecious S. asymmetriphyllum maintains less genetic structure and greater admixture among populations than cosexual S. raphiotes at the same three locations where they co-occur. This suggests that when certain conditions are met, the evolution of dioecy may have proceeded as a means to avoid genetic consequences of self-compatibility and may support hypotheses of benefits gained through differential resource allocation partitioned across sexes. Arguably, the most significant finding of this study is that all taxa are strongly inbred, possibly reflective of a shared response to recent climate shifts, such as the increased frequency and intensity of the region's fire regime.
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Affiliation(s)
- Jason T Cantley
- Department of Biology, San Francisco State University, San Francisco, CA 94132, USA
- Biology Department, Bucknell University, Lewisburg, PA 17837, USA
| | - Ingrid E Jordon-Thaden
- Biology Department, Bucknell University, Lewisburg, PA 17837, USA
- Department of Botany, University of Wisconsin Madison, Madison, WI 53706, USA
| | - Morgan D Roche
- Biology Department, Bucknell University, Lewisburg, PA 17837, USA
- Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 37996, USA
| | - Daniel Hayes
- Biology Department, Bucknell University, Lewisburg, PA 17837, USA
| | - Stephanie Kate
- Department of Biology, San Francisco State University, San Francisco, CA 94132, USA
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12
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Marsh JR, Milner SJ, Shaw M, Stempel AJ, Harvey MS, Rix MG. A Case for Below-Ground Dispersal? Insights into the Biology, Ecology and Conservation of Blind Cave Spiders in the Genus Troglodiplura (Mygalomorphae: Anamidae). INSECTS 2023; 14:insects14050449. [PMID: 37233077 DOI: 10.3390/insects14050449] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 05/05/2023] [Accepted: 05/05/2023] [Indexed: 05/27/2023]
Abstract
Previously described from only fragments of exoskeleton and juvenile specimens, the cave spider genus Troglodiplura (Araneae: Anamidae), endemic to the Nullarbor Plain, is the only troglomorphic member of the infraorder Mygalomorphae recorded from Australia. We investigated the distribution of Troglodiplura in South Australia, collecting and observing the first (intact) mature specimens, widening the number of caves it has been recorded in, and documenting threats to conservation. Phylogenetic analyses support the placement of Troglodiplura as an independent lineage within the subfamily Anaminae (the 'Troglodiplura group') and provide unequivocal evidence that populations from apparently isolated cave systems are conspecifics of T. beirutpakbarai Harvey & Rix, 2020, with extremely low or negligible inter-population mitochondrial divergences. This is intriguing evidence for recent or contemporary subterranean dispersal of these large, troglomorphic spiders. Observations of adults and juvenile spiders taken in the natural cave environment, and supported by observations in captivity, revealed the use of crevices within caves as shelters, but no evidence of silk use for burrow construction, contrasting with the typical burrowing behaviours seen in other Anamidae. We identify a range of threats posed to the species and to the fragile cave ecosystem, and provide recommendations for further research to better define the distribution of vulnerable taxa within caves and identify actions needed to protect them.
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Affiliation(s)
- Jessica R Marsh
- Harry Butler Institute, Murdoch University, Murdoch, WA 6150, Australia
- Biological Sciences, South Australian Museum, GPO Box 234, Adelaide, SA 5001, Australia
- Invertebrates Australia, Osborne Park, WA 6017, Australia
| | - Steven J Milner
- School of Biological Sciences, Faculty of Sciences, Engineering and Technology, University of Adelaide, Adelaide, SA 5005, Australia
| | - Matthew Shaw
- Biological Sciences, South Australian Museum, GPO Box 234, Adelaide, SA 5001, Australia
| | | | - Mark S Harvey
- Collections & Research, Western Australian Museum, 49 Kew Street, Welshpool, WA 6106, Australia
- School of Biological Sciences, University of Western Australia, Crawley, WA 6009, Australia
| | - Michael G Rix
- Collections & Research, Western Australian Museum, 49 Kew Street, Welshpool, WA 6106, Australia
- Biodiversity and Geosciences Program, Queensland Museum Collections & Research Centre, Hendra, QLD 4011, Australia
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13
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Mossop KD, Lemmon AR, Moriarty Lemmon E, Eytan R, Adams M, Unmack PJ, Smith Date K, Morales HE, Hammer MP, Wong BBM, Chapple DG. Phylogenomics and biogeography of arid-adapted Chlamydogobius goby fishes. Mol Phylogenet Evol 2023; 182:107757. [PMID: 36925090 DOI: 10.1016/j.ympev.2023.107757] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2022] [Revised: 02/01/2023] [Accepted: 03/07/2023] [Indexed: 03/17/2023]
Abstract
The progressive aridification of the Australian continent from ∼ 20 million years ago posed severe challenges for the persistence of its resident biota. A key question involves the role of refugial habitats - specifically, their ability to mediate the effects of habitat loss and fragmentation, and their potential to shape opportunities for allopatric speciation. With freshwater species, for example, the patchiness, or absence, of water will constrain distributions. However, aridity may not necessarily isolate populations if disjunct refugia experience frequent hydrological connections. To investigate this potential dichotomy, we explored the evolutionary history of the Chlamydogobius gobies (Gobiiformes: Gobiidae), an arid-adapted genus of six small, benthic fish species that exploit all types of waterbodies (i.e. desert springs, waterholes and bore-fed wetlands, coastal estuarine creeks and mangroves) across parts of central and northern Australia. We used Anchored Phylogenomics to generate a highly resolved phylogeny of the group from sequence data for 260 nuclear loci. Buttressed by companion allozyme and mtDNA datasets, our molecular findings infer the diversification of Chlamydogobius in arid Australia, and provide a phylogenetic structure that cannot be simply explained by invoking allopatric speciation events reflecting current geographic proximity. Our findings are generally consistent with the existing morphological delimitation of species, with one exception: at the shallowest nodes of phylogenetic reconstruction, the molecular data do not fully support the current dichotomous delineation of C. japalpa from C. eremius in Kati Thanda-Lake Eyre-associated waterbodies. Together these findings illustrate the ability of structural (hydrological) connections to generate patterns of connectivity and isolation for an ecologically moderate disperser in response to ongoing habitat aridification. Finally, we explore the implications of these results for the immediate management of threatened (C. gloveri) and critically endangered (C. micropterus, C. squamigenus) congeners.
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Affiliation(s)
- Krystina D Mossop
- School of Biological Sciences, Monash University, Clayton, VIC 3800, Australia
| | - Alan R Lemmon
- Department of Scientific Computing, Florida State University, Dirac Science Library, Tallahassee, FL, USA
| | | | - Ron Eytan
- Marine Biology Department, Texas A&M University at Galveston, Galveston, TX 77554, USA; Peabody Museum of Natural History, Yale University, New Haven, CT, USA
| | - Mark Adams
- Evolutionary Biology Unit, South Australian Museum, North Terrace, Adelaide, SA 5000, Australia; School of Biological Sciences, University of Adelaide, Adelaide, SA 5005, Australia
| | - Peter J Unmack
- School of Biological Sciences, Monash University, Clayton, VIC 3800, Australia; Centre for Applied Water Science, Institute for Applied Ecology, University of Canberra, ACT 2617, Australia
| | - Katie Smith Date
- School of Biological Sciences, Monash University, Clayton, VIC 3800, Australia; Museum Victoria, Sciences Department, GPO Box 666, Melbourne, VIC 3001, Australia
| | - Hernán E Morales
- School of Biological Sciences, Monash University, Clayton, VIC 3800, Australia; Section for Evolutionary Genomics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark
| | - Michael P Hammer
- Natural Sciences, Museum and Art Gallery of the Northern Territory, Darwin, NT 0801, Australia
| | - Bob B M Wong
- School of Biological Sciences, Monash University, Clayton, VIC 3800, Australia
| | - David G Chapple
- School of Biological Sciences, Monash University, Clayton, VIC 3800, Australia.
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14
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Chase MW, Samuel R, Leitch AR, Guignard MS, Conran JG, Nollet F, Fletcher P, Jakob A, Cauz-Santos LA, Vignolle G, Dodsworth S, Christenhusz MJM, Buril MT, Paun O. Down, then up: non-parallel genome size changes and a descending chromosome series in a recent radiation of the Australian allotetraploid plant species, Nicotiana section Suaveolentes (Solanaceae). ANNALS OF BOTANY 2023; 131:123-142. [PMID: 35029647 PMCID: PMC9904355 DOI: 10.1093/aob/mcac006] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Accepted: 01/11/2022] [Indexed: 05/25/2023]
Abstract
BACKGROUND AND AIMS The extent to which genome size and chromosome numbers evolve in concert is little understood, particularly after polyploidy (whole-genome duplication), when a genome returns to a diploid-like condition (diploidization). We study this phenomenon in 46 species of allotetraploid Nicotiana section Suaveolentes (Solanaceae), which formed <6 million years ago and radiated in the arid centre of Australia. METHODS We analysed newly assessed genome sizes and chromosome numbers within the context of a restriction site-associated nuclear DNA (RADseq) phylogenetic framework. KEY RESULTS RADseq generated a well-supported phylogenetic tree, in which multiple accessions from each species formed unique genetic clusters. Chromosome numbers and genome sizes vary from n = 2x = 15 to 24 and 2.7 to 5.8 pg/1C nucleus, respectively. Decreases in both genome size and chromosome number occur, although neither consistently nor in parallel. Species with the lowest chromosome numbers (n = 15-18) do not possess the smallest genome sizes and, although N. heterantha has retained the ancestral chromosome complement, n = 2x = 24, it nonetheless has the smallest genome size, even smaller than that of the modern representatives of ancestral diploids. CONCLUSIONS The results indicate that decreases in genome size and chromosome number occur in parallel down to a chromosome number threshold, n = 20, below which genome size increases, a phenomenon potentially explained by decreasing rates of recombination over fewer chromosomes. We hypothesize that, more generally in plants, major decreases in genome size post-polyploidization take place while chromosome numbers are still high because in these stages elimination of retrotransposons and other repetitive elements is more efficient. Once such major genome size change has been accomplished, then dysploid chromosome reductions take place to reorganize these smaller genomes, producing species with small genomes and low chromosome numbers such as those observed in many annual angiosperms, including Arabidopsis.
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Affiliation(s)
- Mark W Chase
- Royal Botanic Gardens, Kew, Richmond TW9 3DS, UK
- Department of Environment and Agriculture, Curtin University, Perth, Western Australia, Australia
- Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030 Vienna, Austria
| | - Rosabelle Samuel
- Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030 Vienna, Austria
| | - Andrew R Leitch
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK
| | | | - John G Conran
- ACEBB & SGC, School of Biological Sciences, The University of Adelaide, SA 5005Australia
| | - Felipe Nollet
- Universidade Federal Rural de Pernambuco, Centro de Ciências Biológicas, Departamento de Botânica, Rua Manuel de Medeiros, S/N, Dois Irmãos, 52171-900 Recife, Pernambuco, Brazil
| | - Paul Fletcher
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK
| | - Aljaž Jakob
- Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030 Vienna, Austria
| | - Luiz A Cauz-Santos
- Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030 Vienna, Austria
| | - Gabriel Vignolle
- Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030 Vienna, Austria
| | - Steven Dodsworth
- School of Biological Sciences, University of Portsmouth, Portsmouth PO1 2DY, UK
| | - Maarten J M Christenhusz
- Department of Environment and Agriculture, Curtin University, Perth, Western Australia, Australia
| | - Maria Teresa Buril
- ACEBB & SGC, School of Biological Sciences, The University of Adelaide, SA 5005Australia
| | - Ovidiu Paun
- Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030 Vienna, Austria
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15
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Bradbury D, Binks RM, van Leeuwen S, Coates DJ, McArthur SL, Macdonald BM, Hankinson M, Byrne M. The nuanced nature of mesic refugia in arid landscapes: a tale of two peas. ANNALS OF BOTANY 2022; 130:901-916. [PMID: 36219678 PMCID: PMC9758307 DOI: 10.1093/aob/mcac126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 10/11/2022] [Indexed: 06/16/2023]
Abstract
BACKGROUND AND AIMS Understanding how genetic diversity is distributed and maintained within species is a central tenet of evolutionary and conservation biology, yet is understudied in arid regions of the globe. In temperate, glaciated environments, high genetic diversity in plant species is frequently found in refugial areas, which are often associated with southern non-glaciated landscapes. In arid, unglaciated environments, landscape features providing mesic conditions are likely to be refugia, although our understanding needs more refinement in these biomes. We test whether refugia and nuclear diversity hotspots occur in high-elevation, topographically complex areas for co-distributed shrubs (Petalostylis labicheoides and Indigofera monophylla; Fabaceae) in the ancient, arid Pilbara bioregion of north-western Australia. METHODS We conducted extensive sampling of the Pilbara (>1400 individuals from 62 widespread populations) to detect patterns in nuclear diversity and structure based on 13-16 microsatellite loci. Evidence of historical refugia was investigated based on patterns of diversity in three non-coding chloroplast (cp) sequence regions for approx. 240 individuals per species. Haplotype relationships were defined with median-joining networks and maximum likelihood phylogenetic trees. KEY RESULTS We found cpDNA evidence for a high-elevation refugium in P. labicheoides but not for I. monophylla that instead exhibited extraordinary haplotype diversity and evidence for persistence across a widespread area. Nuclear diversity hotspots occurred in, but were not exclusive to, high-elevation locations and extended to adjacent, low-elevation riparian areas in both species. CONCLUSIONS Phylogeographic refugia in arid environments may occur in high-elevation areas for some species but not all, and may be influenced by species-specific traits: a mesic montane refugium in P. labicheoides could be related to its preference for growth in water-gaining areas, while a lack of such evidence in I. monophylla could be related to maintenance of cpDNA diversity in a large soil seed bank and dynamic evolutionary history. Mesic environments created by the intersection of topographically complex landscapes with riparian zones can be contemporary reservoirs of genetic diversity in arid landscapes.
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Affiliation(s)
- Donna Bradbury
- Biodiversity and Conservation Science, Department of Biodiversity, Conservation and Attractions, 17 Dick Perry Avenue, Kensington, Perth, WA 6151, Australia
| | - Rachel M Binks
- Biodiversity and Conservation Science, Department of Biodiversity, Conservation and Attractions, 17 Dick Perry Avenue, Kensington, Perth, WA 6151, Australia
| | - Stephen van Leeuwen
- Biodiversity and Conservation Science, Department of Biodiversity, Conservation and Attractions, 17 Dick Perry Avenue, Kensington, Perth, WA 6151, Australia
- School of Molecular and Life Sciences, Curtin University, GPO Box U1987, Perth, WA 6845, Australia
| | - David J Coates
- Biodiversity and Conservation Science, Department of Biodiversity, Conservation and Attractions, 17 Dick Perry Avenue, Kensington, Perth, WA 6151, Australia
| | - Shelley L McArthur
- Biodiversity and Conservation Science, Department of Biodiversity, Conservation and Attractions, 17 Dick Perry Avenue, Kensington, Perth, WA 6151, Australia
| | - Bronwyn M Macdonald
- Biodiversity and Conservation Science, Department of Biodiversity, Conservation and Attractions, 17 Dick Perry Avenue, Kensington, Perth, WA 6151, Australia
| | - Margaret Hankinson
- Biodiversity and Conservation Science, Department of Biodiversity, Conservation and Attractions, 17 Dick Perry Avenue, Kensington, Perth, WA 6151, Australia
| | - Margaret Byrne
- Biodiversity and Conservation Science, Department of Biodiversity, Conservation and Attractions, 17 Dick Perry Avenue, Kensington, Perth, WA 6151, Australia
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Hay EM, McGee MD, Chown SL. Geographic range size and speciation in honeyeaters. BMC Ecol Evol 2022; 22:86. [PMID: 35768772 PMCID: PMC9245323 DOI: 10.1186/s12862-022-02041-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Accepted: 06/14/2022] [Indexed: 11/10/2022] Open
Abstract
Abstract
Background
Darwin and others proposed that a species’ geographic range size positively influences speciation likelihood, with the relationship potentially dependent on the mode of speciation and other contributing factors, including geographic setting and species traits. Several alternative proposals for the influence of range size on speciation rate have also been made (e.g. negative or a unimodal relationship with speciation). To examine Darwin’s proposal, we use a range of phylogenetic comparative methods, focusing on a large Australasian bird clade, the honeyeaters (Aves: Meliphagidae).
Results
We consider the influence of range size, shape, and position (latitudinal and longitudinal midpoints, island or continental species), and consider two traits known to influence range size: dispersal ability and body size. Applying several analytical approaches, including phylogenetic Bayesian path analysis, spatiophylogenetic models, and state-dependent speciation and extinction models, we find support for both the positive relationship between range size and speciation rate and the influence of mode of speciation.
Conclusions
Honeyeater speciation rate differs considerably between islands and the continental setting across the clade’s distribution, with range size contributing positively in the continental setting, while dispersal ability influences speciation regardless of setting. These outcomes support Darwin’s original proposal for a positive relationship between range size and speciation likelihood, while extending the evidence for the contribution of dispersal ability to speciation.
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17
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Oliver PM, Donnellan SC, Gunn BF. Plio–Pleistocene vicariance across arid Australia in the ‘Spiny Knob-tailed Geckos’ (. AUST J ZOOL 2022. [DOI: 10.1071/zo22008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Across Australia’s monsoon tropics and vast arid zone isolated regions or ‘islands’ of upland or rocky habitat are home to disjunct populations of many taxa of plants and animals. Comparative analyses of lineages that occur across these habitat islands provide opportunities to understand when and how environmental change drove isolation and diversification across arid Australia. Here we present an analysis of mitochondrial genetic diversity across disjunct populations of geckos in the Nephrurus asper group. Dating analyses suggest that disjunct and genetically divergent populations spanning the northern half of Australia diverged through the Plio–Pleistocene. Based on the timing of divergence and current habitat associations we hypothesise that species in this lineage were isolated by the expansion of unsuitable arid-zone habitats from the late Pliocene onwards. Across most areas, these barriers appear to be sandy or stony deserts. However, in eastern Australia genetically divergent populations are separated by grassland on flat vertisol-dominated soils (‘blacksoils’), suggesting that these habitats also expanded during the late Pliocene aridification. Finally, we show that western Queensland populations formerly referred to N. asper are genetically divergent and diagnosable on the basis of colour pattern and, herein, recognise these populations as a distinct species. https://zoobank.org/urn:lsid:zoobank.org:pub:9508CAAA-D014-452D-A3DA-325851615FA7
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18
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Pelegrin JS, Cantalapiedra JL, Gamboa S, Menéndez I, Hernández Fernández M. Phylogenetic biome conservatism as a key concept for an integrative understanding of evolutionary history: Galliformes and Falconiformes as study cases. Zool J Linn Soc 2022. [DOI: 10.1093/zoolinnean/zlac080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
Abstract
Biomes are climatically and biotically distinctive macroecological units that formed over geological time scales. Their features consolidate them as ‘evolutionary scenarios’, with their own diversification dynamics. Under the concept of phylogenetic niche conservatism, we assessed, for the first time, the evolution of biome occupation in birds. We aimed to analyse patterns of adaptation to different climatic regimes and the determinant factors for colonization of emerging biomes by clades from different ancestral biomes. In this work, we reconstructed the biome occupation history of two clades of birds (Galliformes and Falconiformes) under an integrative perspective through a comprehensive review of ecological, phylogenetic, palaeontological and biogeographical evidence. Our findings for both groups are consistent with a scenario of phylogenetic biome conservatism and highlight the importance of changes in climate during the Miocene in the adaptation and evolution of climatic niches. In particular, our results indicate high biome conservatism associated with biomes situated in some of the extremes of the global climate gradient (evergreen tropical rainforest, steppe and tundra) for both bird taxa. Finally, the historical dynamics of tropical seasonal biomes, such as tropical deciduous woodlands and savannas, appear to have played a preponderant role during the diversification processes of these bird lineages.
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Affiliation(s)
- Jonathan S Pelegrin
- Grupo de Investigación en Ecología y Conservación de la Biodiversidad (EcoBio), Área de Biología y Programa de Maestría en Educación Ambiental y Desarrollo Sostenible, Facultades de Ciencias Básicas y Educación, Universidad Santiago de Cali , Colombia
- Departamento de Biología, Facultad de Ciencias Naturales y Exactas, Universidad del Valle , Colombia
| | - Juan L Cantalapiedra
- GloCEE – Global Change Ecology and Evolution Research Group, Departamento de Ciencias de la Vida, Universidad de Alcalá , 28805, Alcalá de Henares (Madrid ), Spain
| | - Sara Gamboa
- Departamento de Estratigrafía, Geodinámica y Paleontología, Facultad de Ciencias Geológicas, Universidad Complutense de Madrid , C/ José Antonio Novais 2, 28040, Madrid , Spain
- Departamento de Cambio Medio Ambiental, Instituto de Geociencias (UCM, CSIC) , C/ José Antonio Novais 2, 28040, Madrid , Spain
| | - Iris Menéndez
- Departamento de Estratigrafía, Geodinámica y Paleontología, Facultad de Ciencias Geológicas, Universidad Complutense de Madrid , C/ José Antonio Novais 2, 28040, Madrid , Spain
- Departamento de Cambio Medio Ambiental, Instituto de Geociencias (UCM, CSIC) , C/ José Antonio Novais 2, 28040, Madrid , Spain
| | - Manuel Hernández Fernández
- Departamento de Estratigrafía, Geodinámica y Paleontología, Facultad de Ciencias Geológicas, Universidad Complutense de Madrid , C/ José Antonio Novais 2, 28040, Madrid , Spain
- Departamento de Cambio Medio Ambiental, Instituto de Geociencias (UCM, CSIC) , C/ José Antonio Novais 2, 28040, Madrid , Spain
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Roycroft E, Fabre PH, MacDonald AJ, Moritz C, Moussalli A, Rowe KC. New Guinea uplift opens ecological opportunity across a continent. Curr Biol 2022; 32:4215-4224.e3. [PMID: 36057260 DOI: 10.1016/j.cub.2022.08.021] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Revised: 08/09/2022] [Accepted: 08/10/2022] [Indexed: 12/14/2022]
Abstract
Sahul unites the world's largest and highest tropical island and the oldest and most arid continent on the backdrop of dynamic environmental conditions. Massive geological uplift in New Guinea is predicted to have acted as a species pump from the late Miocene onward, but the impact of this process on biogeography and diversification remains untested across Sahul as a whole. To address this, we reconstruct the assembly of a recent and diverse radiation of rodents (Murinae: Hydromyini) spanning New Guinea, Australia, and oceanic islands. Using phylogenomic data from 270 specimens, including many recently extinct and highly elusive species, we find that the orogeny and expansion of New Guinea opened ecological opportunity and triggered diversification across a continent. After a single over-water colonization from Asia ca. 8.5 Ma, ancestral Hydromyini were restricted to the tropical rainforest of proto-New Guinea for 3.5 million years. Following a shift in diversification coincident with the orogeny of New Guinea ca. 5 Ma and subsequent colonization of Australia, transitions between geographic regions (n = 24) and biomes (n = 34) become frequent. Recurrent over-water colonization between mainland and islands demonstrate how islands can play a substantial role in the assembly of continental fauna. Our results are consistent with a model of increased ecological opportunity across Sahul following major geological uplift in New Guinea ca. 5 Ma, with sustained diversification facilitated by over-water colonization from the Pleistocene to present. We show how geological processes, biome transitions, and over-water colonization collectively drove the diversification of an expansive continental radiation.
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Affiliation(s)
- Emily Roycroft
- School of BioSciences, The University of Melbourne, Parkville, VIC 3010, Australia; Sciences Department, Museums Victoria, GPO Box 666, Melbourne, VIC 3001, Australia; Division of Ecology and Evolution, Research School of Biology, The Australian National University, Acton, ACT 2601, Australia.
| | - Pierre-Henri Fabre
- Institut des Sciences de l'Evolution (ISEM, UMR 5554 CNRS-IRD-UM), Université de Montpellier, Place E. Bataillon, CC 064, 34095 Montpellier Cedex 5, France; Department of Life Sciences, Natural History Museum, London SW7 5BD, UK
| | - Anna J MacDonald
- Division of Ecology and Evolution, Research School of Biology, The Australian National University, Acton, ACT 2601, Australia; The John Curtin School of Medical Research, The Australian National University, Acton, ACT 2601, Australia
| | - Craig Moritz
- Division of Ecology and Evolution, Research School of Biology, The Australian National University, Acton, ACT 2601, Australia
| | - Adnan Moussalli
- Sciences Department, Museums Victoria, GPO Box 666, Melbourne, VIC 3001, Australia
| | - Kevin C Rowe
- Sciences Department, Museums Victoria, GPO Box 666, Melbourne, VIC 3001, Australia
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20
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Remeš V, Harmáčková L, Matysioková B, Rubáčová L, Remešová E. Vegetation complexity and pool size predict species richness of forest birds. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.964180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Disentangling regional and local drivers of species richness in communities is a long-term focus of ecology. Regional species pools affect local communities by providing their constituent species. Additionally, the amount and variety of resources enhance diversity locally. Here, we investigated whether the same ecological factor (vegetation complexity) shapes both regional and local species richness and thus drives local diversity both indirectly (via pool size) and directly (via facilitating the coexistence of species). We studied passerine birds of woodlands and forests in eastern Australia. We quantified regional species pool size and sampled local bird communities at 63 transects spanning 3,000 km. We estimated canopy height both regionally using satellite imagery and locally using vegetation sampling in the field. We studied how species pool size changed with regional canopy height and water availability, and how local species richness changed with pool size and local canopy height. Local species richness increased with both local canopy height and the size of the regional species pool. Pool size, in turn, increased with regional canopy height, which itself increased with water availability. Moreover, local species richness expressed as a proportion of the regional pool also increased with local canopy height. In sum, vegetation complexity indexed by canopy height had a doubly positive effect on local species richness: indirectly by promoting a large regional species pool and directly by facilitating the coexistence of disproportionately many species locally. Regional pools were larger in tall forests probably due to the legacy of extensive moist forests that once covered most of Australia, thus providing a sizeable potential for speciation, diversification, and species persistence. Local species richness was greater in tall, more productive forests with more vegetation layers likely due to more and varied resources (i.e., more potential niches), allowing the coexistence of more individuals and species of consumers.
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21
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Jones BR, Brock PD, Mantovani B, Beasley-Hall P, Yeates DK, Lo N. Integrative taxonomy of the stick insect genus. INVERTEBR SYST 2022. [DOI: 10.1071/is21076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Austrocarausius Brock, 2000 is a stick insect (Phasmatodea: Lonchodidae) genus containing two species restricted to the tropical rainforests of northern Queensland. Recent specimen collections between the two species’ type localities, Lizard Island and Rockhampton, have suggested that Austrocarausius might represent more than the two nominal species. Here, we apply morphological and molecular analyses to revise the taxonomy of this genus. Using both field-collected and historic museum samples, we developed morphological species hypotheses and descriptions. Genetic sequencing of mitochondrial COI and 16S were undertaken for species delimitation and phylogenetic analysis, including an estimate of the evolutionary timescale of the genus. Based on these results, we propose nine new Austrocarausius species, increasing the number of species in the genus to eleven: A. nigropunctatus (Kirby, 1896), A. mercurius (Stål, 1877), A. coronatus sp. nov., A. decorus sp. nov., A. eirmosus sp. nov., A. gasterbulla sp. nov., A. tuberosus sp. nov., A. macropunctatus sp. nov., A. truncatus sp. nov. A. waiben sp. nov. and A. walkeri sp. nov. Our results suggest Austrocarausius species diversified over the last c. 25–70 Ma, resulting in the now endemic distributions in the tropical rainforests of the central and northern Queensland coasts. This is the first integrative systematic study of an Australian phasmid genus, combining morphological, molecular and biogeographical methods. Additional species of Austrocarausius likely remain undescribed as can be inferred from methodical sampling of rainforest patches along the Queensland coast.
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22
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Heimburger B, Maurer SS, Schardt L, Scheu S, Hartke TR. Historical and future climate change fosters expansion of Australian harvester termites, Drepanotermes. Evolution 2022; 76:2145-2161. [PMID: 35842838 DOI: 10.1111/evo.14573] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Revised: 05/05/2022] [Accepted: 05/25/2022] [Indexed: 01/22/2023]
Abstract
Past evolutionary adaptations to Australia's aridification can help us to understand the potential responses of species in the face of global climate change. Here, we focus on the Australian-endemic genus Drepanotermes, also known as Australian harvester termites, which are mainly found in semiarid and arid regions of Australia. We used species delineation, phylogenetic inference, and ancestral state reconstruction to investigate the evolution of mound-building in Drepanotermes and in relation to reconstructed past climatic conditions. Our findings suggest that mound-building evolved several times independently in Drepanotermes, apparently facilitating expansions into tropical and mesic regions of Australia. The phylogenetic signal of bioclimatic variables, especially limiting environmental factors (e.g., precipitation of the warmest quarter), suggests that the climate exerts a strong selective pressure. Finally, we used environmental niche modeling to predict the present and future habitat suitability for eight Drepanotermes species. Abiotic factors such as annual temperature contributed disproportionately to calibrations, while the inclusion of biotic factors such as predators and vegetation cover improved ecological niche models in some species. A comparison between present and future habitat suitability under two different emission scenarios revealed continued suitability of current ranges as well as substantial habitat gains for most studied species. Human-mediated climate change occurs more quickly than these termites can disperse into newly suitable habitat; however, their role in stabilizing arid ecosystems may allow them to mitigate effects on some other organisms at a local level.
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Affiliation(s)
- Bastian Heimburger
- Johann-Friedrich-Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Untere Karspüle 2, 37073, Göttingen, Germany
| | - Santiago Soto Maurer
- Johann-Friedrich-Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Untere Karspüle 2, 37073, Göttingen, Germany
| | - Leonie Schardt
- Johann-Friedrich-Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Untere Karspüle 2, 37073, Göttingen, Germany
| | - Stefan Scheu
- Johann-Friedrich-Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Untere Karspüle 2, 37073, Göttingen, Germany.,Centre of Biodiversity and Sustainable Land Use, Büsgenweg 1, 37077, Göttingen, Germany
| | - Tamara R Hartke
- Johann-Friedrich-Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Untere Karspüle 2, 37073, Göttingen, Germany
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23
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Millar MA, Binks RM, Tapper S, Macdonald BM, McArthur SL, Hankinson M, Coates DJ, van Leeuwen S, Byrne M. Limited phylogeographic and genetic connectivity in
Acacia
species of low stature in an arid landscape. Ecol Evol 2022; 12:e9052. [PMID: 35813908 PMCID: PMC9257521 DOI: 10.1002/ece3.9052] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Revised: 05/02/2022] [Accepted: 06/08/2022] [Indexed: 11/24/2022] Open
Abstract
Widespread plant species are expected to maintain genetic diversity and gene flow via pollen and seed dispersal. Stature is a key life history trait that affects seed and potentially pollen dispersal, with limited stature associated with limited dispersal and greater genetic differentiation. We sampled Hill’s tabletop wattle (Acacia hilliana) and curry wattle (Acacia spondylophylla), two co‐distributed, widespread, Acacia shrubs of low stature, across the arid Pilbara region of north‐western Australia. Using chloroplast sequence and nuclear microsatellite data we evaluated patterns of population genetic and phylogeographic diversity and structure, demographic signals, ratios of pollen to seed dispersal, evidence for historical refugia, and association between elevation and diversity. Results showed strong phylogeographic (chloroplast, GST = 0.831 and 0.898 for A. hilliana and A. spondylophylla, respectively) and contemporary (nuclear, FST = 0.260 and 0.349 for A. hilliana and A. spondylophylla, respectively) genetic structure in both species. This indicates limited genetic connectivity via seed and pollen dispersal associated with Acacia species of small stature compared to taller tree and shrub acacias across the Pilbara bioregion. This effect of stature on genetic structure is superimposed on moderate levels of genetic diversity that were expected based on widespread ranges (haplotype diversity h = 25 and 12; nuclear diversity He = 0.60 and 0.47 for A. hilliana and A. spondylophylla, respectively). Contemporary genetic structure was congruent at the greater landscape scale, especially in terms of strong genetic differentiation among geographically disjunct populations in less elevated areas. Measures of diversity and connectivity were associated with traits of greater geographic population proximity, population density, population size, and greater individual longevity, and some evidence for range expansion in A. hilliana. Results illustrate that low stature is associated with limited dispersal and greater patterns of genetic differentiation for congenerics in a common landscape and highlight the complex influence of taxon‐specific life history and ecological traits to seed and pollen dispersal.
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Affiliation(s)
- Melissa A. Millar
- Department of Biodiversity, Conservation and Attractions Biodiversity and Conservation Science Bentley Western Australia Australia
| | - Rachel M. Binks
- Department of Biodiversity, Conservation and Attractions Biodiversity and Conservation Science Bentley Western Australia Australia
| | - Sarah‐Louise Tapper
- Department of Biodiversity, Conservation and Attractions Biodiversity and Conservation Science Bentley Western Australia Australia
| | - Bronwyn M. Macdonald
- Department of Biodiversity, Conservation and Attractions Biodiversity and Conservation Science Bentley Western Australia Australia
| | - Shelley L. McArthur
- Department of Biodiversity, Conservation and Attractions Biodiversity and Conservation Science Bentley Western Australia Australia
| | - Margaret Hankinson
- Department of Biodiversity, Conservation and Attractions Biodiversity and Conservation Science Bentley Western Australia Australia
| | - David J. Coates
- Department of Biodiversity, Conservation and Attractions Biodiversity and Conservation Science Bentley Western Australia Australia
| | - Stephen van Leeuwen
- Department of Biodiversity, Conservation and Attractions Biodiversity and Conservation Science Bentley Western Australia Australia
- School of Molecular and Life Sciences Curtin University Perth Western Australia Australia
| | - Margaret Byrne
- Department of Biodiversity, Conservation and Attractions Biodiversity and Conservation Science Bentley Western Australia Australia
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24
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Byrne M, Ramalho CE, Tapper S, Coates DJ. Topographic Complexity Facilitates Persistence Compared to Signals of Contraction and Expansion in the Adjacent Subdued Landscape. FRONTIERS IN CONSERVATION SCIENCE 2022. [DOI: 10.3389/fcosc.2022.833766] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Topographically heterogeneous areas are likely to act as refugia for species because they facilitate survival during regional climatic stress due to availability of a range of microenvironments. The Stirling Ranges are a topographically complex area in the generally subdued and ancient landscape of south-western Australia. We investigated the influence of these landscape features on the evolutionary history of the rare woody shrub, Banksia brownii through a combined approach using phylogeographic analysis of sequence data from three chloroplast sequences, the trnV–ndhC, trnQ–rps16, and rpl32–ndhF intergenic spacer regions, and species distribution modeling. The Stirling Ranges showed high genetic diversity and differentiation among populations consistent with localized persistence and maintenance of large populations in an area that species distribution modeling identified as providing habitat stability at the Last Glacial Maximum as well as under warmer conditions. In contrast, populations in the adjacent subdued lowlands showed signals of low diversity, suggesting contraction, and subsequent expansion from localized refugia in the west. Cool summers are an important climatic variable for the species and species distribution modeling showed suitable habitat identified at the LGM suggesting expansion at this time following likely contraction during earlier warmer climatic oscillations. The isolated, coastal population at Vancouver Peninsula showed low diversity but no differentiation and it may have been established in more recent historical times, possibly through Aboriginal movement of seed. Our analysis of B. brownii highlights the complex evolutionary history of the species and the influence of topographic complexity and habitat heterogeneity in this global biodiversity hotspot.
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25
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Pavón-Vázquez CJ, Esquerré D, Fitch AJ, Maryan B, Doughty P, Donnellan SC, Scott Keogh J. Between a rock and a dry place: phylogenomics, biogeography, and systematics of ridge-tailed monitors (Squamata: Varanidae: Varanus acanthurus complex). Mol Phylogenet Evol 2022; 173:107516. [DOI: 10.1016/j.ympev.2022.107516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Revised: 03/25/2022] [Accepted: 04/06/2022] [Indexed: 11/16/2022]
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26
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Andermann T, Antonelli A, Barrett RL, Silvestro D. Estimating Alpha, Beta, and Gamma Diversity Through Deep Learning. FRONTIERS IN PLANT SCIENCE 2022; 13:839407. [PMID: 35519811 PMCID: PMC9062518 DOI: 10.3389/fpls.2022.839407] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2021] [Accepted: 03/24/2022] [Indexed: 06/14/2023]
Abstract
The reliable mapping of species richness is a crucial step for the identification of areas of high conservation priority, alongside other value and threat considerations. This is commonly done by overlapping range maps of individual species, which requires dense availability of occurrence data or relies on assumptions about the presence of species in unsampled areas deemed suitable by environmental niche models. Here, we present a deep learning approach that directly estimates species richness, skipping the step of estimating individual species ranges. We train a neural network model based on species lists from inventory plots, which provide ground truth data for supervised machine learning. The model learns to predict species richness based on spatially associated variables, including climatic and geographic predictors, as well as counts of available species records from online databases. We assess the empirical utility of our approach by producing independently verifiable maps of alpha, beta, and gamma plant diversity at high spatial resolutions for Australia, a continent with highly heterogeneous diversity patterns. Our deep learning framework provides a powerful and flexible new approach for estimating biodiversity patterns, constituting a step forward toward automated biodiversity assessments.
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Affiliation(s)
- Tobias Andermann
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
- Gothenburg Global Biodiversity Centre, University of Gothenburg, Gothenburg, Sweden
- Department of Biology, University of Fribourg, Fribourg, Switzerland
- Swiss Institute of Bioinformatics, Fribourg, Switzerland
| | - Alexandre Antonelli
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
- Gothenburg Global Biodiversity Centre, University of Gothenburg, Gothenburg, Sweden
- Department of Plant Sciences, University of Oxford, United Kingdom
- Royal Botanic Gardens, Kew, Richmond, United Kingdom
| | - Russell L. Barrett
- Royal Botanic Gardens, Sydney, NSW, Australia
- School of Biological Sciences, The University of Western Australia, Crawley, WA, Australia
| | - Daniele Silvestro
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
- Gothenburg Global Biodiversity Centre, University of Gothenburg, Gothenburg, Sweden
- Department of Biology, University of Fribourg, Fribourg, Switzerland
- Swiss Institute of Bioinformatics, Fribourg, Switzerland
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27
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Mitogenome of the extinct Desert 'rat-kangaroo' times the adaptation to aridity in macropodoids. Sci Rep 2022; 12:5829. [PMID: 35388060 PMCID: PMC8987032 DOI: 10.1038/s41598-022-09568-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Accepted: 03/25/2022] [Indexed: 01/31/2023] Open
Abstract
The evolution of Australia's distinctive marsupial fauna has long been linked to the onset of continent-wide aridity. However, how this profound climate change event affected the diversification of extant lineages is still hotly debated. Here, we assemble a DNA sequence dataset of Macropodoidea-the clade comprising kangaroos and their relatives-that incorporates a complete mitogenome for the Desert 'rat-kangaroo', Caloprymnus campestris. This enigmatic species went extinct nearly 90 years ago and is known from a handful of museum specimens. Caloprymnus is significant because it was the only macropodoid restricted to extreme desert environments, and therefore calibrates the group's specialisation for increasingly arid conditions. Our robustly supported phylogenies nest Caloprymnus amongst the bettongs Aepyprymnus and Bettongia. Dated ancestral range estimations further reveal that the Caloprymnus-Bettongia lineage originated in nascent xeric settings during the middle to late Miocene, ~ 12 million years ago (Ma), but subsequently radiated into fragmenting mesic habitats after the Pliocene to mid-Pleistocene. This timeframe parallels the ancestral divergences of kangaroos in woodlands and forests, but predates their adaptive dispersal into proliferating dry shrublands and grasslands from the late Miocene to mid-Pleistocene, after ~ 7 Ma. We thus demonstrate that protracted changes in both climate and vegetation likely staged the emergence of modern arid zone macropodoids.
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28
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Buckley SJ, Brauer CJ, Unmack PJ, Hammer MP, Beheregaray LB. Variation in intraspecific demography drives localised concordance but species-wide discordance in response to past climatic change. BMC Ecol Evol 2022; 22:35. [PMID: 35317750 PMCID: PMC8941757 DOI: 10.1186/s12862-022-01990-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Accepted: 03/11/2022] [Indexed: 01/25/2023] Open
Abstract
BACKGROUND Understanding how species biology may facilitate resilience to climate change remains a critical factor in detecting and protecting species at risk of extinction. Many studies have focused on the role of particular ecological traits in driving species responses, but less so on demographic history and levels of standing genetic variation. Additionally, spatial variation in the interaction of demographic and adaptive factors may further complicate prediction of species responses to environmental change. We used environmental and genomic datasets to reconstruct the phylogeographic histories of two ecologically similar and largely co-distributed freshwater fishes, the southern (Nannoperca australis) and Yarra (N. obscura) pygmy perches, to assess the degree of concordance in their responses to Plio-Pleistocene climatic changes. We described contemporary genetic diversity, phylogenetic histories, demographic histories, and historical species distributions across both species, and statistically evaluated the degree of concordance in co-occurring populations. RESULTS Marked differences in contemporary genetic diversity, historical distribution changes and historical migration were observed across the species, with a distinct lack of genetic diversity and historical range expansion suggested for N. obscura. Although several co-occurring populations within a shared climatic refugium demonstrated concordant demographic histories, idiosyncratic population size changes were found at the range edges of the more spatially restricted species. Discordant responses between species were associated with low standing genetic variation in peripheral populations. This might have hindered adaptive potential, as documented in recent demographic declines and population extinctions for the two species. CONCLUSION Our results highlight both the role of spatial scale in the degree of concordance in species responses to climate change, and the importance of standing genetic variation in facilitating range shifts. Even when ecological traits are similar between species, long-term genetic diversity and historical population demography may lead to discordant responses to ongoing and future climate change.
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Affiliation(s)
- Sean James Buckley
- Molecular Ecology Laboratory, College of Science and Engineering, Flinders University, Adelaide, SA, 5001, Australia
| | - Chris J Brauer
- Molecular Ecology Laboratory, College of Science and Engineering, Flinders University, Adelaide, SA, 5001, Australia
| | - Peter J Unmack
- Centre for Applied Water Science, Institute for Applied Ecology, University of Canberra, Canberra, ACT, 2601, Australia
| | - Michael P Hammer
- Natural Sciences, Museum and Art Gallery of the Northern Territory, Darwin, NT, 0801, Australia
| | - Luciano B Beheregaray
- Molecular Ecology Laboratory, College of Science and Engineering, Flinders University, Adelaide, SA, 5001, Australia.
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29
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Thacker CE, Shelley JJ, McCraney WT, Adams M, Hammer MP, Unmack PJ. Phylogeny, diversification, and biogeography of a hemiclonal hybrid system of native Australian freshwater fishes (Gobiiformes: Gobioidei: Eleotridae: Hypseleotris). BMC Ecol Evol 2022; 22:22. [PMID: 35236294 PMCID: PMC8892812 DOI: 10.1186/s12862-022-01981-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2021] [Accepted: 02/21/2022] [Indexed: 11/10/2022] Open
Abstract
Background Carp gudgeons (genus Hypseleotris) are a prominent part of the Australian freshwater fish fauna, with species distributed around the western, northern, and eastern reaches of the continent. We infer a calibrated phylogeny of the genus based on nuclear ultraconserved element (UCE) sequences and using Bayesian estimation of divergence times, and use this phylogeny to investigate geographic patterns of diversification with GeoSSE. The southeastern species have hybridized to form hemiclonal lineages, and we also resolve relationships of hemiclones and compare their phylogenetic placement in the UCE phylogeny with a hypothesis based on complete mitochondrial genomes. We then use phased SNPs extracted from the UCE sequences for population structure analysis among the southeastern species and hemiclones. Results Hypseleotris cyprinoides, a widespread euryhaline species known from throughout the Indo-Pacific, is resolved outside the remainder of the species. Two Australian radiations comprise the bulk of Hypseleotris, one primarily in the northwestern coastal rivers and a second inhabiting the southeastern region including the Murray–Darling, Bulloo-Bancannia and Lake Eyre basins, plus coastal rivers east of the Great Dividing Range. Our phylogenetic results reveal cytonuclear discordance between the UCE and mitochondrial hypotheses, place hemiclone hybrids among their parental taxa, and indicate that the genus Kimberleyeleotris is nested within the northwestern Hypseleotris radiation along with three undescribed species. We infer a crown age for Hypseleotris of 17.3 Ma, date the radiation of Australian species at roughly 10.1 Ma, and recover the crown ages of the northwestern (excluding H. compressa) and southeastern radiations at 5.9 and 7.2 Ma, respectively. Range-dependent diversification analyses using GeoSSE indicate that speciation and extinction rates have been steady between the northwestern and southeastern Australian radiations and between smaller radiations of species in the Kimberley region and the Arnhem Plateau. Analysis of phased SNPs confirms inheritance patterns and reveals high levels of heterozygosity among the hemiclones. Conclusions The northwestern species have restricted ranges and likely speciated in allopatry, while the southeastern species are known from much larger areas, consistent with peripatric speciation or allopatric speciation followed by secondary contact. Species in the northwestern Kimberley region differ in shape from those in the southeast, with the Kimberley species notably more elongate and slender than the stocky southeastern species, likely due to the different topographies and flow regimes of the rivers they inhabit.
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Affiliation(s)
- Christine E Thacker
- Vertebrate Zoology, Santa Barbara Museum of Natural History, 2559 Puesta del Sol, Santa Barbara, CA, 93105, USA. .,Research and Collections, Department of Ichthyology, Natural History Museum of Los Angeles County, 900 Exposition Blvd., Los Angeles, CA, 90007, USA.
| | - James J Shelley
- School of BioSciences, University of Melbourne, Melbourne, VIC, 3010, Australia.,Department of Environment, Land, Water and Planning, Arthur Rylah Institute for Environmental Research, 123 Brown Street, Heidelberg, VIC, 3084, Australia
| | - W Tyler McCraney
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, 612 Charles E. Young Drive South, Box 957246, Los Angeles, CA, 90095-7246, USA
| | - Mark Adams
- Evolutionary Biology Unit, South Australian Museum, North Terrace, Adelaide, SA, 5000, Australia.,School of Biological Sciences, University of Adelaide, Adelaide, SA, 5005, Australia
| | - Michael P Hammer
- Evolutionary Biology Unit, South Australian Museum, North Terrace, Adelaide, SA, 5000, Australia.,Museum and Art Gallery of the Northern Territory, GPO Box 4646, Darwin, NT, 0801, Australia
| | - Peter J Unmack
- Centre for Applied Water Science, Institute for Applied Ecology, University of Canberra, Canberra, ACT, 2617, Australia
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30
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Pavón-Vázquez CJ, Brennan IG, Skeels A, Keogh JS. Competition and geography underlie speciation and morphological evolution in Indo-Australasian monitor lizards. Evolution 2022; 76:476-495. [PMID: 34816437 DOI: 10.1111/evo.14403] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Revised: 10/06/2021] [Accepted: 10/16/2021] [Indexed: 01/21/2023]
Abstract
How biotic and abiotic factors act together to shape biological diversity is a major question in evolutionary biology. The recent availability of large datasets and development of new methodological approaches provide new tools to evaluate the predicted effects of ecological interactions and geography on lineage diversification and phenotypic evolution. Here, we use a near complete phylogenomic-scale phylogeny and a comprehensive morphological dataset comprising more than a thousand specimens to assess the role of biotic and abiotic processes in the diversification of monitor lizards (Varanidae). This charismatic group of lizards shows striking variation in species richness among its clades and multiple instances of endemic radiation in Indo-Australasia (i.e., the Indo-Australian Archipelago and Australia), one of Earth's most biogeographically complex regions. We found heterogeneity in diversification dynamics across the family. Idiosyncratic biotic and geographic conditions appear to have driven diversification and morphological evolution in three endemic Indo-Australasian radiations. Furthermore, incumbency effects partially explain patterns in the biotic exchange between Australia and New Guinea. Our results offer insight into the dynamic history of Indo-Australasia, the evolutionary significance of competition, and the long-term consequences of incumbency effects.
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Affiliation(s)
- Carlos J Pavón-Vázquez
- Division of Ecology and Evolution, Research School of Biology, Australian National University, Canberra, ACT 2601, Australia.,Current Address: Department of Biological Sciences, New York City College of Technology, City University of New York, Brooklyn, New York, 11201
| | - Ian G Brennan
- Division of Ecology and Evolution, Research School of Biology, Australian National University, Canberra, ACT 2601, Australia
| | - Alexander Skeels
- Landscape Ecology, Department of Environmental Systems Science, Institute of Terrestrial Ecosystems, ETH Zürich, Zürich, CH-8092, Switzerland.,Swiss Federal Research Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, CH-8903, Switzerland
| | - J Scott Keogh
- Division of Ecology and Evolution, Research School of Biology, Australian National University, Canberra, ACT 2601, Australia
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Odour-mediated Interactions Between an Apex Reptilian Predator and its Mammalian Prey. J Chem Ecol 2022; 48:401-415. [PMID: 35233678 PMCID: PMC9079038 DOI: 10.1007/s10886-022-01350-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2021] [Revised: 02/04/2022] [Accepted: 02/06/2022] [Indexed: 12/24/2022]
Abstract
An important but understudied modality for eavesdropping between predators and prey is olfaction, especially between non-mammalian vertebrate predators and their prey. Here we test three olfactory eavesdropping predictions involving an apex reptilian predator, the sand goanna Varanus gouldii, and several species of its small mammalian prey in arid central Australia: 1) small mammals will recognize and avoid the odour of V. gouldii; 2) V. gouldii will be attracted to the odour of small mammals, especially of species that maximize its energetic returns; and 3) small mammals will be less mobile and will show higher burrow fidelity where V. gouldii is absent compared with where it is present. As expected, we found that small mammals recognized and avoided faecal odour of this goanna, feeding less intensively at food patches where the odour of V. gouldii was present than at patches with no odour or a pungency control odour. Varanus gouldii also was attracted to the odour of small mammals in artificial burrows and dug more frequently at burrows containing the odour of species that were energetically profitable than at those of species likely to yield diminishing returns. Our third prediction received mixed support. Rates of movement of three species of small mammals were no different where V. gouldii was present or absent, but burrow fidelity in two of these species increased as expected where V. gouldii had been removed. We conclude that olfaction plays a key role in the dynamic interaction between V. gouldii and its mammalian prey, with the interactants using olfaction to balance their respective costs of foraging and reducing predation risk. We speculate that the risk of predation from this apex reptilian predator drives the highly unusual burrow-shifting behaviour that characterizes many of Australia's small desert mammals.
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McCurry MR, Cantrill DJ, Smith PM, Beattie R, Dettmann M, Baranov V, Magee C, Nguyen JMT, Forster MA, Hinde J, Pogson R, Wang H, Marjo CE, Vasconcelos P, Frese M. A Lagerstätte from Australia provides insight into the nature of Miocene mesic ecosystems. SCIENCE ADVANCES 2022; 8:eabm1406. [PMID: 34995110 PMCID: PMC8741189 DOI: 10.1126/sciadv.abm1406] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Accepted: 11/15/2021] [Indexed: 06/14/2023]
Abstract
Reduced precipitation in the Miocene triggered the geographic contraction of rainforest ecosystems around the world. In Australia, this change was particularly pronounced; mesic rainforest ecosystems that once dominated the landscape transformed into the shrublands, grasslands, and deserts of today. A lack of well-preserved fossils has made it difficult to understand the nature of Australian ecosystems before the aridification. Here, we report on an exceptionally well-preserved rainforest biota from New South Wales, Australia. This Konservat-Lagerstätte hosts a rich diversity of microfossils, plants, insects, spiders, and vertebrate remains preserved in goethite. We document evidence for several species interactions including predation, parasitism, and pollination. The fossils are indicative of an oxbow lake in a mesic rainforest and suggest that rainforest distributions have shifted since the Miocene. The variety of fossils preserved, together with high fidelity of preservation, allows for unprecedented insights into the mesic ecosystems that dominated Australia during the Miocene.
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Affiliation(s)
- Matthew R. McCurry
- Australian Museum Research Institute, 1 William Street, Sydney, New South Wales 2010, Australia
- Earth and Sustainability Science Research Centre, School of Biological, Earth and Environmental Sciences (BEES), University of New South Wales, Kensington, New South Wales 2052, Australia
- Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20560, USA
| | - David J. Cantrill
- Royal Botanic Gardens Victoria, Private Bag 2000, South Yarra, Victoria 3141, Australia
| | - Patrick M. Smith
- Australian Museum Research Institute, 1 William Street, Sydney, New South Wales 2010, Australia
- Department of Biological Sciences, Macquarie University, North Ryde, New South Wales 2109, Australia
| | - Robert Beattie
- Australian Museum Research Institute, 1 William Street, Sydney, New South Wales 2010, Australia
| | - Mary Dettmann
- Geosciences, Queensland Museum, South Brisbane, Queensland 4101, Australia
| | - Viktor Baranov
- Ludwig-Maximilian University of Munich, Biocenter, Großhaderner Strasse 2, 82152 Planegg-Martinsried, Germany
| | - Charles Magee
- Geoscience Australia, Symonston 2609, Australian Capital Territory, Australia
| | - Jacqueline M. T. Nguyen
- Australian Museum Research Institute, 1 William Street, Sydney, New South Wales 2010, Australia
- Earth and Sustainability Science Research Centre, School of Biological, Earth and Environmental Sciences (BEES), University of New South Wales, Kensington, New South Wales 2052, Australia
- College of Science and Engineering, Flinders University, Bedford Park, South Australia 5042, Australia
| | - Marnie A. Forster
- Research School of Earth Sciences, Australian National University, Canberra, Australian Capital Territory 0200, Australia
| | - Jack Hinde
- Illawarra Environmental Education Centre, Shell Cove, New South Wales 2529, Australia
| | - Ross Pogson
- Australian Museum Research Institute, 1 William Street, Sydney, New South Wales 2010, Australia
| | - Helen Wang
- Mark Wainwright Analytical Centre, University of New South Wales, Kensington, New South Wales 2052, Australia
| | - Christopher E. Marjo
- Mark Wainwright Analytical Centre, University of New South Wales, Kensington, New South Wales 2052, Australia
| | - Paulo Vasconcelos
- School of Earth Sciences, The University of Queensland, Brisbane, Queensland 4072, Australia
| | - Michael Frese
- Australian Museum Research Institute, 1 William Street, Sydney, New South Wales 2010, Australia
- Commonwealth Scientific and Industrial Research Organisation, Health and Biosecurity, Black Mountain, Australian Capital Territory 2601, Australia
- Faculty of Science and Technology, University of Canberra, Bruce, Australian Capital Territory 2601, Australia
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King RA, Fagan-Jeffries EP, Bradford TM, Stringer DN, Finston TL, Halse SA, Eberhard SM, Humphreys G, Humphreys BF, Austin AD, Cooper SJB. Cryptic diversity down under: defining species in the subterranean amphipod genus Nedsia Barnard & Williams, 1995 (Hadzioidea: Eriopisidae) from the Pilbara, Western Australia. INVERTEBR SYST 2022. [DOI: 10.1071/is21041] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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LIU ZHENHUA, ŚLIPIŃSKI ADAM, PANG HONG. Salsolaius gen. nov. a new genus of Apalochrini (Coleoptera, Melyridae, Malachiinae) from the salt Lake Way of Western Australia. Zootaxa 2021; 5082:393-400. [DOI: 10.11646/zootaxa.5082.4.7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Indexed: 11/04/2022]
Abstract
Apalochrini comprises nearly half of the genera of Australian Melyridae, which are all recognized by male specific characters, and are commonly found on grasses, flowers and riverside or seashore rocks. Here we describe a new genus Salsolaius gen. nov. from Lake Way of Western Australia, representing the first known genus of Australian Melyridae inhabitating in salt lakes. The new genus can be easily distinguished by asymmetrically biserrate antennae and exposed apical abdomen from above in both male and female, the former characters is firstly found in Melyridae. Consequently, Salsolaius biserratus sp. nov. was described as the type species of this genus. An updated key to genera of Australian Apalochrini is provided.
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Sánchez‐González LA, Castillo‐Chora VJ, Arbeláez‐Cortés E, Navarro‐Sigüenza AG. Diversification and secondary contact in the magpie‐jays (
Calocitta
) throughout the pacific lowlands of Mesoamerica. J ZOOL SYST EVOL RES 2021. [DOI: 10.1111/jzs.12571] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Luis A. Sánchez‐González
- Museo de Zoología “Alfonso L. Herrera” Facultad de Ciencias Universidad Nacional Autónoma de México Ciudad de México México
| | - Vicente J. Castillo‐Chora
- Museo de Zoología “Alfonso L. Herrera” Facultad de Ciencias Universidad Nacional Autónoma de México Ciudad de México México
- Posgrado en Ciencias Biológicas Universidad Nacional Autónoma de México Ciudad de México México
| | - Enrique Arbeláez‐Cortés
- Grupo de Estudios en Biodiversidad Escuela de Biología Universidad Industrial de Santander Bucaramanga Colombia
| | - Adolfo G. Navarro‐Sigüenza
- Museo de Zoología “Alfonso L. Herrera” Facultad de Ciencias Universidad Nacional Autónoma de México Ciudad de México México
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Oberprieler S, Rees G, Nielsen D, Shackleton M, Watson G, Chandler L, Davis J. Connectivity, not short-range endemism, characterises the groundwater biota of a northern Australian karst system. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 796:148955. [PMID: 34328872 DOI: 10.1016/j.scitotenv.2021.148955] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2021] [Revised: 06/19/2021] [Accepted: 07/06/2021] [Indexed: 06/13/2023]
Abstract
Groundwater ecosystems have a diverse and unique fauna, often dominated by Crustacea and generally characterised by short range endemics confined to single aquifers. Much of this knowledge has come from studies conducted either in fractured rock aquifers or alluvial aquifers. Karstic subterranean environments are present in the Cambrian Limestone Aquifer (CLA) in the Northern Territory, Australia, a freshwater aquifer which spans an area of ~28,000 km2. The presence of underground caverns and channels potentially allows extensive connectivity within this groundwater system. The emerging shale gas industry in the Beetaloo region, which underlies the CLA, provided the impetus to undertake the first survey of the potential existence of a stygofaunal community. Twenty-six groundwater wells (bores) and two springs were sampled in August and October 2019, across a distance of ~500 km, from the sub-tropical Mataranka region in the north to the semi-arid Barkly Tablelands in the south. Plankton nets and motorised pumps were used to collect water samples and conventional microscope-based morphological examinations in conjunction with environmental DNA (eDNA) were used to determine the presence of stygofauna. COI barcoding and 16S rRNA regions were also used for phylogenetic analysis. All stygofaunal communities were dominated by crustaceans, namely shrimps, amphipods, ostracods, copepods and syncarids. This fauna showed little affinity with the stygofauna recorded from more extensively sampled aquifers in north-western Australia, with new genera and species present in the CLA. eDNA analysis showed the presence of diverse biota at sites where direct water sampling for intact animals was difficult. COI and 16S analysis confirmed that a species of blind shrimp, Parisia unguis, occurred extensively throughout the aquifer, over a distance of at least ~300 km. The presence of Pa. unguis at widely separated sites across the CLA is consistent with substantial connectivity within the aquifer. This connectivity indicates that the risk of groundwater contamination from fracking chemicals needs to be adequately mitigated to prevent widespread effects.
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Affiliation(s)
- Stefanie Oberprieler
- Research Institute for the Environment and Livelihoods, Charles Darwin University, Darwin, NT 0909, Australia.
| | - Gavin Rees
- CSIRO Land and Water, Albury, NSW 2640, Australia; Institute of Land Water and Society, Charles Sturt University, Thurgoona, NSW 2640, Australia.
| | - Daryl Nielsen
- CSIRO Land and Water, Albury, NSW 2640, Australia; Institute of Land Water and Society, Charles Sturt University, Thurgoona, NSW 2640, Australia.
| | - Michael Shackleton
- Centre for Freshwater Ecosystems, La Trobe University, Wodonga, Victoria 3689, Australia.
| | - Garth Watson
- CSIRO Land and Water, Albury, NSW 2640, Australia; Institute of Land Water and Society, Charles Sturt University, Thurgoona, NSW 2640, Australia.
| | - Lisa Chandler
- Research Institute for the Environment and Livelihoods, Charles Darwin University, Darwin, NT 0909, Australia; Supervising Scientist Branch, Department of Agriculture, Water and the Environment, Darwin, NT 0820, Australia.
| | - Jenny Davis
- Research Institute for the Environment and Livelihoods, Charles Darwin University, Darwin, NT 0909, Australia.
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Flores‐Rentería L, Rymer PD, Ramadoss N, Riegler M. Major biogeographic barriers in eastern Australia have shaped the population structure of widely distributed Eucalyptus moluccana and its putative subspecies. Ecol Evol 2021; 11:14828-14842. [PMID: 34765144 PMCID: PMC8571587 DOI: 10.1002/ece3.8169] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Revised: 09/01/2021] [Accepted: 09/07/2021] [Indexed: 11/14/2022] Open
Abstract
We have investigated the impact of recognized biogeographic barriers on genetic differentiation of grey box (Eucalyptus moluccana), a common and widespread tree species of the family Myrtaceae in eastern Australian woodlands, and its previously proposed four subspecies moluccana, pedicellata, queenslandica, and crassifolia. A range of phylogeographic analyses were conducted to examine the population genetic differentiation and subspecies genetic structure in E. moluccana in relation to biogeographic barriers. Slow evolving markers uncovering long term processes (chloroplast DNA) were used to generate a haplotype network and infer phylogeographic barriers. Additionally, fast evolving, hypervariable markers (microsatellites) were used to estimate demographic processes and genetic structure among five geographic regions (29 populations) across the entire distribution of E. moluccana. Morphological features of seedlings, such as leaf and stem traits, were assessed to evaluate population clusters and test differentiation of the putative subspecies. Haplotype network analysis revealed twenty chloroplast haplotypes with a main haplotype in a central position shared by individuals belonging to the regions containing the four putative subspecies. Microsatellite analysis detected the genetic structure between Queensland (QLD) and New South Wales (NSW) populations, consistent with the McPherson Range barrier, an east-west spur of the Great Dividing Range. The substructure was detected within QLD and NSW in line with other barriers in eastern Australia. The morphological analyses supported differentiation between QLD and NSW populations, with no difference within QLD, yet some differentiation within NSW populations. Our molecular and morphological analyses provide evidence that several geographic barriers in eastern Australia, including the Burdekin Gap and the McPherson Range have contributed to the genetic structure of E. moluccana. Genetic differentiation among E. moluccana populations supports the recognition of some but not all the four previously proposed subspecies, with crassifolia being the most differentiated.
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Affiliation(s)
| | - Paul D. Rymer
- Hawkesbury Institute for the EnvironmentWestern Sydney UniversityPenrithNSWAustralia
| | | | - Markus Riegler
- Hawkesbury Institute for the EnvironmentWestern Sydney UniversityPenrithNSWAustralia
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38
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Xue Z, Greimler J, Paun O, Ford KA, Barfuss MHJ, Chiapella JO. The Evolutionary History of New Zealand Deschampsia Is Marked by Long-Distance Dispersal, Endemism, and Hybridization. BIOLOGY 2021; 10:1001. [PMID: 34681100 PMCID: PMC8533413 DOI: 10.3390/biology10101001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Revised: 09/22/2021] [Accepted: 09/30/2021] [Indexed: 11/16/2022]
Abstract
The contrasting evolutionary histories of endemic versus related cosmopolitan species provide avenues to understand the spatial drivers and limitations of biodiversity. Here, we investigated the evolutionary history of three New Zealand endemic Deschampsia species, and how they are related to cosmopolitan D. cespitosa. We used RADseq to test species delimitations, infer a dated species tree, and investigate gene flow patterns between the New Zealand endemics and the D. cespitosa populations of New Zealand, Australia and Korea. Whole plastid DNA analysis was performed on a larger worldwide sampling. Morphometrics of selected characters were applied to New Zealand sampling. Our RADseq review of over 55 Mbp showed the endemics as genetically well-defined from each other. Their last common ancestor with D. cespitosa lived during the last ten MY. The New Zealand D. cespitosa appears in a clade with Australian and Korean samples. Whole plastid DNA analysis revealed the endemics as members of a southern hemisphere clade, excluding the extant D. cespitosa of New Zealand. Both data provided strong evidence for hybridization between D. cespitosa and D. chapmanii. Our findings provide evidence for at least two migration events of the genus Deschampsia to New Zealand and hybridization between D. cespitosa and endemic taxa.
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Affiliation(s)
- Zhiqing Xue
- Department of Botany and Biodiversity Research, Faculty of Life Sciences, University of Vienna, Rennweg 14, 1030 Vienna, Austria; (O.P.); (M.H.J.B.)
| | - Josef Greimler
- Department of Botany and Biodiversity Research, Faculty of Life Sciences, University of Vienna, Rennweg 14, 1030 Vienna, Austria; (O.P.); (M.H.J.B.)
| | - Ovidiu Paun
- Department of Botany and Biodiversity Research, Faculty of Life Sciences, University of Vienna, Rennweg 14, 1030 Vienna, Austria; (O.P.); (M.H.J.B.)
| | - Kerry A. Ford
- Allan Herbarium, Manaaki-Whenua Landcare Research, P.O. Box 69040, Lincoln 7640, New Zealand;
| | - Michael H. J. Barfuss
- Department of Botany and Biodiversity Research, Faculty of Life Sciences, University of Vienna, Rennweg 14, 1030 Vienna, Austria; (O.P.); (M.H.J.B.)
| | - Jorge O. Chiapella
- Instituto de Investigaciones en Biodiversidad y Medioambiente (INIBIOMA-CONICET-Universidad Nacional del Comahue), Quintral 1250, Bariloche R8400FRF, Argentina;
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39
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Gericke O, Fowler RM, Heskes AM, Bayly MJ, Semple SJ, Ndi CP, Stærk D, Løland CJ, Murphy DJ, Buirchell BJ, Møller BL. Navigating through chemical space and evolutionary time across the Australian continent in plant genus Eremophila. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 108:555-578. [PMID: 34324744 PMCID: PMC9292440 DOI: 10.1111/tpj.15448] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Revised: 06/07/2021] [Accepted: 07/22/2021] [Indexed: 05/13/2023]
Abstract
Eremophila is the largest genus in the plant tribe Myoporeae (Scrophulariaceae) and exhibits incredible morphological diversity across the Australian continent. The Australian Aboriginal Peoples recognize many Eremophila species as important sources of traditional medicine, the most frequently used plant parts being the leaves. Recent phylogenetic studies have revealed complex evolutionary relationships between Eremophila and related genera in the tribe. Unique and structurally diverse metabolites, particularly diterpenoids, are also a feature of plants in this group. To assess the full dimension of the chemical space of the tribe Myoporeae, we investigated the metabolite diversity in a chemo-evolutionary framework applying a combination of molecular phylogenetic and state-of-the-art computational metabolomics tools to build a dataset involving leaf samples from a total of 291 specimens of Eremophila and allied genera. The chemo-evolutionary relationships are expounded into a systematic context by integration of information about leaf morphology (resin and hairiness), environmental factors (pollination and geographical distribution), and medicinal properties (traditional medicinal uses and antibacterial studies), augmenting our understanding of complex interactions in biological systems.
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Affiliation(s)
- Oliver Gericke
- Plant Biochemistry LaboratoryDepartment of Plant and Environmental SciencesUniversity of CopenhagenFrederiksberg CDK‐1871Denmark
| | - Rachael M. Fowler
- School of BioSciencesThe University of MelbourneParkvilleVic.3010Australia
| | - Allison M. Heskes
- Plant Biochemistry LaboratoryDepartment of Plant and Environmental SciencesUniversity of CopenhagenFrederiksberg CDK‐1871Denmark
| | - Michael J. Bayly
- School of BioSciencesThe University of MelbourneParkvilleVic.3010Australia
| | - Susan J. Semple
- Quality Use of Medicines and Pharmacy Research CentreSchool of Pharmacy and Medical SciencesUniversity of South AustraliaAdelaideSA5000Australia
| | - Chi P. Ndi
- Quality Use of Medicines and Pharmacy Research CentreSchool of Pharmacy and Medical SciencesUniversity of South AustraliaAdelaideSA5000Australia
| | - Dan Stærk
- Department of Drug Design and PharmacologyFaculty of Health and Medical SciencesUniversity of CopenhagenCopenhagenDK‐2100Denmark
| | - Claus J. Løland
- Department of NeuroscienceFaculty of Health and Medical SciencesUniversity of CopenhagenCopenhagenDK‐2100Denmark
| | | | | | - Birger Lindberg Møller
- Plant Biochemistry LaboratoryDepartment of Plant and Environmental SciencesUniversity of CopenhagenFrederiksberg CDK‐1871Denmark
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40
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A Hotspot of Arid Zone Subterranean Biodiversity: The Robe Valley in Western Australia. DIVERSITY 2021. [DOI: 10.3390/d13100482] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Knowledge of subterranean fauna has mostly been derived from caves and streambeds, which are relatively easily accessed. In contrast, subterranean fauna inhabiting regional groundwater aquifers or the vadose zone (between surface soil layers and the watertable) is difficult to sample. Here we provide species lists for a globally significant subterranean fauna hotspot in the Robe Valley of the Pilbara region, Western Australia. This fauna was collected from up to 50 m below ground level using mining exploration drill holes and monitoring wells. Altogether, 123 subterranean species were collected over a distance of 17 km, comprising 65 troglofauna and 58 stygofauna species. Of these, 61 species were troglobionts and 48 stygobionts. The troglofauna occurs in small voids and fissures in mesas comprised mostly of an iron ore formation, while the stygofauna occurs in the alluvium of a river floodplain. The richness of the Robe Valley is not a localized aberration, but rather reflects the richness of the arid Pilbara region. While legislation in Western Australia has recognized the importance of subterranean fauna, mining is occurring in the Robe Valley hotspot with conditions of environmental approval that are designed to ensure species persistence.
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41
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Buckley SJ, Brauer C, Unmack PJ, Hammer MP, Beheregaray LB. The roles of aridification and sea level changes in the diversification and persistence of freshwater fish lineages. Mol Ecol 2021; 30:4866-4883. [PMID: 34265125 DOI: 10.1111/mec.16082] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Revised: 07/05/2021] [Accepted: 07/06/2021] [Indexed: 11/29/2022]
Abstract
While the influence of Pleistocene climatic changes on divergence and speciation has been well-documented across the globe, complex spatial interactions between hydrology and eustatics over longer timeframes may also determine species evolutionary trajectories. Within the Australian continent, glacial cycles were not associated with changes in ice cover and instead largely resulted in fluctuations from moist to arid conditions across the landscape. We investigated the role of hydrological and coastal topographic changes brought about by Plio-Pleistocene climatic changes on the biogeographic history of a small Australian freshwater fish, the southern pygmy perch Nannoperca australis. Using 7958 ddRAD-seq (double digest restriction-site associated DNA) loci and 45,104 filtered SNPs, we combined phylogenetic, coalescent and species distribution analyses to assess the various roles of aridification, sea level and tectonics and associated biogeographic changes across southeast Australia. Sea-level changes since the Pliocene and reduction or disappearance of large waterbodies throughout the Pleistocene were determining factors in strong divergence across the clade, including the initial formation and maintenance of a cryptic species, N. 'flindersi'. Isolated climatic refugia and fragmentation due to lack of connected waterways maintained the identity and divergence of inter- and intraspecific lineages. Our historical findings suggest that predicted increases in aridification and sea level due to anthropogenic climate change might result in markedly different demographic impacts, both spatially and across different landscape types.
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Affiliation(s)
- Sean James Buckley
- Molecular Ecology Laboratory, College of Science and Engineering, Flinders University, Adelaide, SA, Australia
| | - Chris Brauer
- Molecular Ecology Laboratory, College of Science and Engineering, Flinders University, Adelaide, SA, Australia
| | - Peter J Unmack
- Centre for Applied Water Science, Institute for Applied Ecology, University of Canberra, ACT, Australia
| | - Michael P Hammer
- Natural Sciences, Museum and Art Gallery of the Northern Territory, Darwin, NT, Australia
| | - Luciano B Beheregaray
- Molecular Ecology Laboratory, College of Science and Engineering, Flinders University, Adelaide, SA, Australia
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42
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Maestre FT, Benito BM, Berdugo M, Concostrina-Zubiri L, Delgado-Baquerizo M, Eldridge DJ, Guirado E, Gross N, Kéfi S, Le Bagousse-Pinguet Y, Ochoa-Hueso R, Soliveres S. Biogeography of global drylands. THE NEW PHYTOLOGIST 2021; 231:540-558. [PMID: 33864276 DOI: 10.1111/nph.17395] [Citation(s) in RCA: 54] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2020] [Accepted: 03/16/2021] [Indexed: 05/21/2023]
Abstract
Despite their extent and socio-ecological importance, a comprehensive biogeographical synthesis of drylands is lacking. Here we synthesize the biogeography of key organisms (vascular and nonvascular vegetation and soil microorganisms), attributes (functional traits, spatial patterns, plant-plant and plant-soil interactions) and processes (productivity and land cover) across global drylands. These areas have a long evolutionary history, are centers of diversification for many plant lineages and include important plant diversity hotspots. This diversity captures a strikingly high portion of the variation in leaf functional diversity observed globally. Part of this functional diversity is associated with the large variation in response and effect traits in the shrubs encroaching dryland grasslands. Aridity and its interplay with the traits of interacting plant species largely shape biogeographical patterns in plant-plant and plant-soil interactions, and in plant spatial patterns. Aridity also drives the composition of biocrust communities and vegetation productivity, which shows large geographical variation. We finish our review by discussing major research gaps, which include: studying regular vegetation spatial patterns; establishing large-scale plant and biocrust field surveys assessing individual-level trait measurements; knowing whether the impacts of plant-plant and plant-soil interactions on biodiversity are predictable; and assessing how elevated CO2 modulates future aridity conditions and plant productivity.
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Affiliation(s)
- Fernando T Maestre
- Instituto Multidisciplinar para el Estudio del Medio "Ramon Margalef", Universidad de Alicante, Carretera de San Vicente del Raspeig s/n, San Vicente del Raspeig, Alicante, 03690, Spain
- Departamento de Ecología, Universidad de Alicante, Carretera de San Vicente del Raspeig s/n, 03690 San Vicente del Raspeig, Alicante, Spain
| | - Blas M Benito
- Instituto Multidisciplinar para el Estudio del Medio "Ramon Margalef", Universidad de Alicante, Carretera de San Vicente del Raspeig s/n, San Vicente del Raspeig, Alicante, 03690, Spain
| | - Miguel Berdugo
- Institut de Biologia Evolutiva, UPF-CSIC, Dr. Aiguadé, Barcelona, Cataluña, 08003, Spain
| | - Laura Concostrina-Zubiri
- Departamento de Biología y Geología, Física y Química Inorgánica, Escuela Superior de Ciencias Experimentales y Tecnología, Universidad Rey Juan Carlos, Calle Tulipán s/n, Móstoles, 28933, Spain
| | - Manuel Delgado-Baquerizo
- Departamento de Sistemas Físicos, Químicos y Naturales, Universidad Pablo de Olavide, Sevilla, 41013, Spain
| | - David J Eldridge
- Centre for Ecosystem Science, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, NSW, 2052, Australia
| | - Emilio Guirado
- Instituto Multidisciplinar para el Estudio del Medio "Ramon Margalef", Universidad de Alicante, Carretera de San Vicente del Raspeig s/n, San Vicente del Raspeig, Alicante, 03690, Spain
| | - Nicolas Gross
- Université Clermont Auvergne, INRAE, VetAgro Sup, UMR Ecosystème Prairial, Clermont-Ferrand, 63000, France
| | - Sonia Kéfi
- ISEM, CNRS, Univ. Montpellier, IRD, EPHE, Montpellier, 34090, France
- Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM, 87501, USA
| | - Yoann Le Bagousse-Pinguet
- Aix Marseille Univ, CNRS, Avignon Université, IRD, IMBE, Technopôle Arbois-Méditerranée Bât. Villemin - BP 80, Aix-en-Provence cedex 04, F-13545, France
| | - Raúl Ochoa-Hueso
- Department of Biology, IVAGRO, University of Cádiz, Campus de Excelencia Internacional Agroalimentario (ceiA3), Campus del Rio San Pedro, Puerto Real, Cádiz, 11510, Spain
| | - Santiago Soliveres
- Instituto Multidisciplinar para el Estudio del Medio "Ramon Margalef", Universidad de Alicante, Carretera de San Vicente del Raspeig s/n, San Vicente del Raspeig, Alicante, 03690, Spain
- Departamento de Ecología, Universidad de Alicante, Carretera de San Vicente del Raspeig s/n, 03690 San Vicente del Raspeig, Alicante, Spain
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Mitchell KJ, Hugall AF, Heiniger H, Joseph L, Oliver PM. Disparate origins for endemic bird taxa from the ‘Gondwana Rainforests’ of Central Eastern Australia. Biol J Linn Soc Lond 2021. [DOI: 10.1093/biolinnean/blab031] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
Abstract
Subtropical and temperate rainforests of Central Eastern Australia are some of the largest remaining fragments of their kind globally. The biota of these rainforests appears to comprise two broad biogeographical elements: a more ancient (Miocene or older) and typically upland temperate (‘Gondwanan’) element and a younger (Plio-Pleistocene) lowland tropical element. We present the first phylogenetic synthesis of the spatiotemporal origins for the eight bird taxa endemic to Central Eastern Australian Rainforests. At least five of these eight focal taxa show Plio-Pleistocene divergences from their respective northern sister taxa, consistent with origins driven by recent expansion and contraction of lowland rainforest. In contrast, two more strictly upland species, the rufous scrub-bird (Atrichornis rufescens) and the logrunner (Orthonyx temminckii), diverged from their nearest living relatives during the Miocene, suggesting potentially longer histories of persistence and more temperate origins. Finally, we did not recover reciprocal monophyly in mitogenomes from the two extant lyrebirds, Albert’s lyrebird (Menura alberti) and the superb lyrebird (Menura novaehollandiae). The disparate divergence ages recovered among all eight taxa are consistent with the biota of the Central Eastern Australian Rainforests comprising isolates either of younger age and tropical lowland origins or of older age and temperate upland origins.
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Affiliation(s)
- Kieren J Mitchell
- ARC Centre of Excellence for Australian Biodiversity and Heritage (CABAH), School of Biological Sciences, University of Adelaide, North Terrace Campus, Adelaide, SA, Australia
| | - Andrew F Hugall
- Department of Sciences, Museums Victoria, Melbourne, VIC, Australia
| | - Holly Heiniger
- ARC Centre of Excellence for Australian Biodiversity and Heritage (CABAH), School of Biological Sciences, University of Adelaide, North Terrace Campus, Adelaide, SA, Australia
| | - Leo Joseph
- Australian National Wildlife Collection, CSIRO National Research Collections Australia, Canberra, ACT, Australia
| | - Paul M Oliver
- Centre for Planetary Health and Food Security, Griffith University, Nathan, QLD, Australia
- Biodiversity and Geosciences Program, Queensland Museum, South Brisbane, QLD, Australia
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44
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McDonald PJ, Jobson P, Köhler F, Nano CEM, Oliver PM. The living heart: Climate gradients predict desert mountain endemism. Ecol Evol 2021; 11:4366-4378. [PMID: 33976816 PMCID: PMC8093673 DOI: 10.1002/ece3.7333] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Revised: 01/27/2021] [Accepted: 01/31/2021] [Indexed: 11/16/2022] Open
Abstract
Mountain regions are centers of biodiversity endemism at a global scale but the role of arid-zone mountain ranges in shaping biodiversity patterns is poorly understood. Focusing on three guilds of taxa from a desert upland refugium in Australia, we sought to determine: (a) the relative extent to which climate, terrain or geological substrate predict endemism, and (b) whether patterns of endemism are complimentary across broad taxonomic guilds. We mapped regional endemism for plants, land snails, and vertebrates using combined Species Distribution Models (SDMs) for all endemic taxa (n = 82). We then modelled predictors of endemism using Generalised Additive Models (GAMs) and geology, terrain, and climate variables. We tested for the presence of inter- and intraguild hotspots of endemism. Many individual plant and land snail taxa were tightly linked with geology, corresponding to small distributions. Conversely, most vertebrate taxa were not constrained to specific geological substrates and occurred over larger areas. However, across all three guilds climate was the strongest predictor of regional endemism, particularly for plants wherein discrete hotspots of endemism were buffered from extreme summer temperatures. Land snail and vertebrate endemism peaked in areas with highest precipitation in the driest times of the year. Hotspots of endemism within each guild poorly predicted endemism in other guilds. We found an overarching signal that climatic gradients play a dominant role in the persistence of endemic taxa in an arid-zone mountain range system. An association with higher rainfall and cooler temperatures indicates that continuing trends toward hotter and drier climates may lead to range contractions in this, and potentially other, arid-zone mountain biotas. Contrasting patterns of endemism across guilds highlight the need to couple comprehensive regional planning for the protection of climate refugia, with targeted management of more localized and habitat specialist taxa.
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Affiliation(s)
| | - Peter Jobson
- Department of Environment and Natural ResourcesNorthern Territory HerbariumAlice SpringsNTAustralia
| | | | | | - Paul M. Oliver
- Environmental Futures Research Institute and School of Environment and ScienceGriffith UniversityNathanQldAustralia
- Biodiversity and Geosciences ProgramQueensland MuseumSouth BrisbaneQldAustralia
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45
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Khan HS, Santamouris M, Kassomenos P, Paolini R, Caccetta P, Petrou I. Spatiotemporal variation in urban overheating magnitude and its association with synoptic air-masses in a coastal city. Sci Rep 2021; 11:6762. [PMID: 33762659 PMCID: PMC7991413 DOI: 10.1038/s41598-021-86089-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Accepted: 03/05/2021] [Indexed: 11/09/2022] Open
Abstract
Urban overheating (UO) may interact with synoptic-scale weather conditions. The association between meteorological parameters and UO has already been a subject of considerable research, however, the impact of synoptic-scale weather conditions on UO magnitude, particularly in a coastal city that is also near the desert landmass (Sydney) has never been investigated before. The present research examines the influence of synoptic-scale weather conditions on UO magnitude in Sydney by utilizing the newly developed gridded weather typing classification (GWTC). The diurnal, and seasonal variations in suburban-urban temperature contrast (ΔT) in association with synoptic-scale weather conditions, and ΔT response to synoptic air-masses during extreme heat events are investigated in three zones of Sydney. Generally, an exacerbation in UO magnitude was reported at daytime over the years, whereas the nocturnal UO magnitude was alleviated over time. The humid warm (HW), and warm (W) air-masses were found primarily responsible for exacerbated daytime UO during extreme heat events and in all other seasons, raising the mean daily maximum ΔT to 8-10.5 °C in Western Sydney, and 5-6.5 °C in inner Sydney. The dry warm (DW), and W conditions were mainly responsible for urban cooling (UC) at nighttime, bringing down the mean daily minimum ΔT to - 7.5 to - 10 °C in Western Sydney, and - 6 to - 7.5 °C in inner Sydney. The appropriate mitigation technologies can be planned based on this study to alleviate the higher daytime temperatures in the Sydney suburbs.
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Affiliation(s)
- Hassan Saeed Khan
- School of Built Environment, University of New South Wales (UNSW), Sydney, NSW, 2052, Australia. .,Data-61, The Commonwealth Scientific and Industrial Research Organization (CSIRO), Dick Perry Ave, Kensington, Perth, WA, 6151, Australia.
| | - Mat Santamouris
- School of Built Environment, University of New South Wales (UNSW), Sydney, NSW, 2052, Australia
| | - Pavlos Kassomenos
- Department of Physics, University of Ioannina, 45110, Ioannina, Greece
| | - Riccardo Paolini
- School of Built Environment, University of New South Wales (UNSW), Sydney, NSW, 2052, Australia
| | - Peter Caccetta
- Data-61, The Commonwealth Scientific and Industrial Research Organization (CSIRO), Dick Perry Ave, Kensington, Perth, WA, 6151, Australia
| | - Ilias Petrou
- Department of Physics, University of Ioannina, 45110, Ioannina, Greece
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Rix MG, Wilson JD, Huey JA, Hillyer MJ, Gruber K, Harvey MS. Diversification of the mygalomorph spider genus Aname (Araneae: Anamidae) across the Australian arid zone: Tracing the evolution and biogeography of a continent-wide radiation. Mol Phylogenet Evol 2021; 160:107127. [PMID: 33667632 DOI: 10.1016/j.ympev.2021.107127] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2020] [Revised: 01/26/2021] [Accepted: 02/24/2021] [Indexed: 02/08/2023]
Abstract
The assembly of the Australian arid zone biota has long fascinated biogeographers. Covering over two-thirds of the continent, Australia's vast arid zone biome is home to a distinctive fauna and flora, including numerous lineages which have diversified since the Eocene. Tracing the origins and speciation history of these arid zone taxa has been an ongoing endeavour since the advent of molecular phylogenetics, and an increasing number of studies on invertebrate animals are beginning to complement a rich history of research on vertebrate and plant taxa. In this study, we apply continent-wide genetic sampling and one of the largest phylogenetic data matrices yet assembled for a genus of Australian spiders, to reconstruct the phylogeny and biogeographic history of the open-holed trapdoor spider genus Aname L. Koch, 1873. This highly diverse lineage of Australian mygalomorph spiders has a distribution covering the majority of Australia west of the Great Dividing Range, but apparently excluding the high rainfall zones of eastern Australia and Tasmania. Original and legacy sequences were obtained for three mtDNA and four nuDNA markers from 174 taxa in seven genera, including 150 Aname specimen terminals belonging to 102 species-level operational taxonomic units, sampled from 32 bioregions across Australia. Reconstruction of the phylogeny and biogeographic history of Aname revealed three radiations (Tropical, Temperate-Eastern and Continental), which could be further broken into eight major inclusive clades. Ancestral area reconstruction revealed the Pilbara, Monsoon Tropics and Mid-West to be important ancestral areas for the genus Aname and its closest relatives, with the origin of Aname itself inferred in the Pilbara bioregion. From these origins in the arid north-west of Australia, our study found evidence for a series of subsequent biome transitions in separate lineages, with at least eight tertiary incursions back into the arid zone from more mesic tropical, temperate or eastern biomes, and only two major clades which experienced widespread (primary) in situ diversification within the arid zone. Based on our phylogenetic results, and results from independent legacy divergence dating studies, we further reveal the importance of climate-driven biotic change in the Miocene and Pliocene in shaping the distribution and composition of the Australian arid zone biota, and the value of continent-wide studies in revealing potentially complex patterns of arid zone diversification in dispersal-limited invertebrate taxa.
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Affiliation(s)
- Michael G Rix
- Biodiversity and Geosciences Program, Queensland Museum, South Brisbane, QLD 4101, Australia; Collections and Research Centre, Western Australian Museum, Welshpool, WA 6106, Australia.
| | - Jeremy D Wilson
- Biodiversity and Geosciences Program, Queensland Museum, South Brisbane, QLD 4101, Australia; Division of Arachnology, Museo Argentino de Ciencias Naturales "Bernardino Rivadavia", Av. Ángel Gallardo 470 (C1405DJR), Buenos Aires, Argentina
| | - Joel A Huey
- Collections and Research Centre, Western Australian Museum, Welshpool, WA 6106, Australia; School of Biological Sciences, The University of Western Australia, Crawley, WA 6009, Australia
| | - Mia J Hillyer
- Collections and Research Centre, Western Australian Museum, Welshpool, WA 6106, Australia
| | - Karl Gruber
- Collections and Research Centre, Western Australian Museum, Welshpool, WA 6106, Australia; School of Biological Sciences, The University of Western Australia, Crawley, WA 6009, Australia
| | - Mark S Harvey
- Collections and Research Centre, Western Australian Museum, Welshpool, WA 6106, Australia; School of Biological Sciences, The University of Western Australia, Crawley, WA 6009, Australia
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47
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Khan HS, Santamouris M, Paolini R, Caccetta P, Kassomenos P. Analyzing the local and climatic conditions affecting the urban overheating magnitude during the Heatwaves (HWs) in a coastal city: A case study of the greater Sydney region. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 755:142515. [PMID: 33035986 DOI: 10.1016/j.scitotenv.2020.142515] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Revised: 09/07/2020] [Accepted: 09/18/2020] [Indexed: 06/11/2023]
Abstract
Urban overheating coincides with Heatwaves (HWs) and the thermal stress might get amplified in cities. To predict the interactions between urban overheating and HWs, the surface energy balance response to HWs is crucial. HW is a regional phenomenon and the climatic conditions may influence the local conditions to alter the energy budget contrast between a city and its adjacent peripheral areas. The interactions between the urban overheating and HWs are explored in a coastal city (Sydney Australia), also in the proximity of dry landmass, while considering the site characteristics, distance from the coast, and the population density. A positive response between urban overheating and HWs is reported. Advective heat flux in the form of a dualistic circulation system is found responsible for exacerbating the urban overheating magnitude (ΔT) during the HWs and altering the available energy balance. Land-coastal distance is also found as an important contributor in magnifying the urban-suburban temperature contrast. Considering the future urbanization in western Sydney, surfaces capable of retaining higher moisture content are prescribed to reduce the occurrence of extreme HW events. Activation of the ventilation corridor for the coastal wind penetration in western Sydney is another recommendation of this study.
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Affiliation(s)
- Hassan Saeed Khan
- Faculty of Built Environment, University of New South Wales (UNSW), Sydney, NSW 2052, Australia; Data-61, The Commonwealth Scientific and Industrial Research Organization (CSIRO), Underwood Ave, Floreat, Perth, WA 6014, Australia.
| | - Mattheos Santamouris
- Faculty of Built Environment, University of New South Wales (UNSW), Sydney, NSW 2052, Australia
| | - Riccardo Paolini
- Faculty of Built Environment, University of New South Wales (UNSW), Sydney, NSW 2052, Australia
| | - Peter Caccetta
- Data-61, The Commonwealth Scientific and Industrial Research Organization (CSIRO), Underwood Ave, Floreat, Perth, WA 6014, Australia
| | - Pavlos Kassomenos
- Department of Physics, University of Ioannina, GR-45110 Ioannina, Greece
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48
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Fahey PS, Fowler RM, McLay TGB, Udovicic F, Cantrill DJ, Bayly MJ. Divergent lineages in a semi-arid mallee species, Eucalyptus behriana, correspond to a major geographic break in southeastern Australia. Ecol Evol 2021; 11:664-678. [PMID: 33437459 PMCID: PMC7790638 DOI: 10.1002/ece3.7099] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Revised: 11/09/2020] [Accepted: 11/13/2020] [Indexed: 12/02/2022] Open
Abstract
AIM To infer relationships between populations of the semi-arid, mallee eucalypt, Eucalyptus behriana, to build hypotheses regarding evolution of major disjunctions in the species' distribution and to expand understanding of the biogeographical history of southeastern Australia. LOCATION Southeastern Australia. TAXON Eucalyptus behriana (Myrtaceae, Angiospermae). METHODS We developed a large dataset of anonymous genomic loci for 97 samples from 11 populations of E. behriana using double digest restriction site-associated DNA sequencing (ddRAD-seq), to determine genetic relationships between the populations. These relationships, along with species distribution models, were used to construct hypotheses regarding environmental processes that have driven fragmentation of the species' distribution. RESULTS Greatest genetic divergence was between populations on either side of the Lower Murray Basin. Populations west of the Basin showed greater genetic divergence between one another than the eastern populations. The most genetically distinct population in the east (Long Forest) was separated from others by the Great Dividing Range. A close relationship was found between the outlying northernmost population (near West Wyalong) and those in the Victorian Goldfields despite a large disjunction between them. CONCLUSIONS Patterns of genetic variation are consistent with a history of vicariant differentiation of disjunct populations. We infer that an early disjunction to develop in the species distribution was that across the Lower Murray Basin, an important biogeographical barrier separating many dry sclerophyll plant taxa in southeastern Australia. Additionally, our results suggest that the western populations fragmented earlier than the eastern ones. Fragmentation, both west and east of the Murray Basin, is likely tied to climatic changes associated with glacial-interglacial cycles although it remains possible that major geological events including uplift of the Mount Lofty Ranges and basalt flows in the Newer Volcanics Province also played a role.
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Affiliation(s)
- Patrick S. Fahey
- School of BioSciencesThe University of MelbourneParkvilleVic.Australia
| | - Rachael M. Fowler
- School of BioSciencesThe University of MelbourneParkvilleVic.Australia
| | - Todd G. B. McLay
- School of BioSciencesThe University of MelbourneParkvilleVic.Australia
- Royal Botanic Gardens VictoriaSouth YarraVic.Australia
| | | | | | - Michael J. Bayly
- School of BioSciencesThe University of MelbourneParkvilleVic.Australia
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49
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Nistelberger HM, Tapper S, Coates DJ, McArthur SL, Byrne M. As old as the hills: Pliocene palaeogeographical processes influence patterns of genetic structure in the widespread, common shrub Banksia sessilis. Ecol Evol 2021; 11:1069-1082. [PMID: 33520187 PMCID: PMC7820165 DOI: 10.1002/ece3.7127] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2020] [Revised: 11/04/2020] [Accepted: 11/25/2020] [Indexed: 11/12/2022] Open
Abstract
The impact of Quaternary glaciation on the development of phylogeographic structure in plant species is well documented. In unglaciated landscapes, phylogeographic patterns tend to reflect processes relating to persistence and stochasticity, yet other factors, associated with the palaeogeographical history of the landscape, including geomorphological events, can also have a significant influence. The unglaciated landscape of south-western Western Australia is an ideal location to observe these ancient drivers of lineage diversification, with tectonic activity associated with the Darling Fault in the late Pliocene attributed to patterns of deep phylogeographic divergence in a widespread tree from this region. Interestingly, other species within this region have not shown this pattern and this palaeogeographical boundary therefore presents an opportunity to examine age and historical distribution of plant species endemic to this region. In this study, we assess patterns of genetic diversity and structure across 28 populations of the widespread shrub Banksia sessilis using three cpDNA markers and nine nuclear microsatellite markers. Sixteen cpDNA haplotypes were identified, comprising two major chloroplast DNA lineages that are estimated to have diverged in the Pliocene, approximately 3.3 million years ago. This timing coincides with major geomorphological processes in the landscape, including the separation of the Darling Plateau from the adjacent Swan Coastal Plain, as well as eustatic changes on the Swan Coastal Plain that are likely to have resulted in the physical isolation of historical plant lineages. Chloroplast lineages were broadly aligned with populations associated with older lateritic soils of the Darling Plateau and Geraldton sandplains or the younger sandy soils associated with the Swan Coastal Plain and Southern Coastline. This structural pattern of lateritic versus non-lateritic division was not observed in the nuclear microsatellite data that identified three genetic clades that roughly corresponded to populations in the North, South, and Central portions of the distributions.
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Affiliation(s)
- Heidi Maria Nistelberger
- Department of Biodiversity, Conservation and AttractionsBiodiversity and Conservation ScienceBentleyWAAustralia
| | - Sarah‐Louise Tapper
- Department of Biodiversity, Conservation and AttractionsBiodiversity and Conservation ScienceBentleyWAAustralia
| | - David J. Coates
- Department of Biodiversity, Conservation and AttractionsBiodiversity and Conservation ScienceBentleyWAAustralia
| | - Shelley L. McArthur
- Department of Biodiversity, Conservation and AttractionsBiodiversity and Conservation ScienceBentleyWAAustralia
| | - Margaret Byrne
- Department of Biodiversity, Conservation and AttractionsBiodiversity and Conservation ScienceBentleyWAAustralia
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50
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Langille BL, Hyde J, Saint KM, Bradford TM, Stringer DN, Tierney SM, Humphreys WF, Austin AD, Cooper SJB. Evidence for speciation underground in diving beetles (Dytiscidae) from a subterranean archipelago. Evolution 2020; 75:166-175. [PMID: 33219700 DOI: 10.1111/evo.14135] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Revised: 11/02/2020] [Accepted: 11/05/2020] [Indexed: 12/12/2022]
Abstract
Most subterranean animals are assumed to have evolved from surface ancestors following colonization of a cave system; however, very few studies have raised the possibility of "subterranean speciation" in underground habitats (i.e., obligate cave-dwelling organisms [troglobionts] descended from troglobiotic ancestors). Numerous endemic subterranean diving beetle species from spatially discrete calcrete aquifers in Western Australia (stygobionts) have evolved independently from surface ancestors; however, several cases of sympatric sister species raise the possibility of subterranean speciation. We tested this hypothesis using vision (phototransduction) genes that are evolving under neutral processes in subterranean species and purifying selection in surface species. Using sequence data from 32 subterranean and five surface species in the genus Paroster (Dytiscidae), we identified deleterious mutations in long wavelength opsin (lwop), arrestin 1 (arr1), and arrestin 2 (arr2) shared by a sympatric sister-species triplet, arr1 shared by a sympatric sister-species pair, and lwop and arr2 shared among closely related species in adjacent calcrete aquifers. In all cases, a common ancestor possessed the function-altering mutations, implying they were already adapted to aphotic environments. Our study represents one of the first confirmed cases of subterranean speciation in cave insects. The assessment of genes undergoing pseudogenization provides a novel way of testing modes of speciation and the history of diversification in blind cave animals.
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Affiliation(s)
- Barbara L Langille
- Australian Centre for Evolutionary Biology and Biodiversity, Department of Ecology and Evolutionary Biology, School of Biological Sciences, University of Adelaide, Adelaide, South Australia, 5005, Australia
| | - Josephine Hyde
- Australian Centre for Evolutionary Biology and Biodiversity, Department of Ecology and Evolutionary Biology, School of Biological Sciences, University of Adelaide, Adelaide, South Australia, 5005, Australia.,Department of Environmental Sciences, The Connecticut Agricultural Experiment Station, New Haven, Connecticut, 06511
| | - Kathleen M Saint
- Australian Centre for Evolutionary Biology and Biodiversity, Department of Ecology and Evolutionary Biology, School of Biological Sciences, University of Adelaide, Adelaide, South Australia, 5005, Australia
| | - Tessa M Bradford
- Australian Centre for Evolutionary Biology and Biodiversity, Department of Ecology and Evolutionary Biology, School of Biological Sciences, University of Adelaide, Adelaide, South Australia, 5005, Australia.,Evolutionary Biology Unit, South Australian Museum, Adelaide, South Australia, 5000, Australia
| | - Danielle N Stringer
- Australian Centre for Evolutionary Biology and Biodiversity, Department of Ecology and Evolutionary Biology, School of Biological Sciences, University of Adelaide, Adelaide, South Australia, 5005, Australia
| | - Simon M Tierney
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, New South Wales, 2751, Australia
| | - William F Humphreys
- Collections and Research, Western Australian Museum, 49 Kew Street, Welshpool, Western Australia, 6106, Australia.,School of Animal Biology, University of Western Australia, Nedlands, Western Australia, 6009, Australia
| | - Andrew D Austin
- Australian Centre for Evolutionary Biology and Biodiversity, Department of Ecology and Evolutionary Biology, School of Biological Sciences, University of Adelaide, Adelaide, South Australia, 5005, Australia.,Evolutionary Biology Unit, South Australian Museum, Adelaide, South Australia, 5000, Australia
| | - Steven J B Cooper
- Australian Centre for Evolutionary Biology and Biodiversity, Department of Ecology and Evolutionary Biology, School of Biological Sciences, University of Adelaide, Adelaide, South Australia, 5005, Australia.,Evolutionary Biology Unit, South Australian Museum, Adelaide, South Australia, 5000, Australia
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