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For: van den Heuvel RN, van der Biezen E, Jetten MSM, Hefting MM, Kartal B. Denitrification at pH 4 by a soil-derived Rhodanobacter-dominated community. Environ Microbiol 2011;12:3264-71. [PMID: 20649643 DOI: 10.1111/j.1462-2920.2010.02301.x] [Citation(s) in RCA: 66] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Number Cited by Other Article(s)
1
Kong X, Ying S, Cai Z, Du J, Chen D, Liu D. Impact of p-cresol on hydrogen sulfide and ammonia treatment by biotrickling filter and the production of nitrous oxide. CHEMOSPHERE 2024;361:142568. [PMID: 38851510 DOI: 10.1016/j.chemosphere.2024.142568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Revised: 05/24/2024] [Accepted: 06/06/2024] [Indexed: 06/10/2024]
2
Manning VA, Moore PA, Trippe KM. Metagenome-assembled genomes of an acid-tolerant nitrifying bacterial community isolated from a bioreactor used in ammonium scrubbers at animal-rearing facilities. Microbiol Resour Announc 2024;13:e0038624. [PMID: 38864651 PMCID: PMC11256797 DOI: 10.1128/mra.00386-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2024] [Accepted: 05/09/2024] [Indexed: 06/13/2024]  Open
3
He G, Chen G, Xie Y, Swift CM, Ramirez D, Cha G, Konstantinidis KT, Radosevich M, Löffler FE. Sustained bacterial N2O reduction at acidic pH. Nat Commun 2024;15:4092. [PMID: 38750010 PMCID: PMC11096178 DOI: 10.1038/s41467-024-48236-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Accepted: 04/23/2024] [Indexed: 05/18/2024]  Open
4
Lu Y, Liu T, Hu S, Yuan Z, Dwyer J, Akker BVD, Lloyd J, Guo J. Coupling Partial Nitritation, Anammox and n-DAMO in a membrane aerated biofilm reactor for simultaneous dissolved methane and nitrogen removal. WATER RESEARCH 2024;255:121511. [PMID: 38552483 DOI: 10.1016/j.watres.2024.121511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Revised: 03/18/2024] [Accepted: 03/23/2024] [Indexed: 04/24/2024]
5
Hunt KA, Carr AV, Otwell AE, Valenzuela JJ, Walker KS, Dixon ER, Lui LM, Nielsen TN, Bowman S, von Netzer F, Moon JW, Schadt CW, Rodriguez M, Lowe K, Joyner D, Davis KJ, Wu X, Chakraborty R, Fields MW, Zhou J, Hazen TC, Arkin AP, Wankel SD, Baliga NS, Stahl DA. Contribution of Microorganisms with the Clade II Nitrous Oxide Reductase to Suppression of Surface Emissions of Nitrous Oxide. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024;58:7056-7065. [PMID: 38608141 DOI: 10.1021/acs.est.3c07972] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/14/2024]
6
Li H, Song A, Qiu L, Liang S, Chi Z. Deep groundwater irrigation altered microbial community and increased anammox and methane oxidation in paddy wetlands of Sanjiang Plain, China. Front Microbiol 2024;15:1354279. [PMID: 38450168 PMCID: PMC10915080 DOI: 10.3389/fmicb.2024.1354279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Accepted: 02/05/2024] [Indexed: 03/08/2024]  Open
7
Meng Y, Geng X, Zhu P, Bai X, Zhang P, Ni G, Hou Y. Enhanced mutualism: A promotional effect driven by bacteria during the early invasion of Phytolacca americana. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2024;34:e2742. [PMID: 36107405 DOI: 10.1002/eap.2742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2022] [Revised: 07/19/2022] [Accepted: 07/25/2022] [Indexed: 06/15/2023]
8
Sun Y, Yin Y, He G, Cha G, Ayala-del-Río HL, González G, Konstantinidis KT, Löffler FE. pH selects for distinct N2O-reducing microbiomes in tropical soil microcosms. ISME COMMUNICATIONS 2024;4:ycae070. [PMID: 38808123 PMCID: PMC11131594 DOI: 10.1093/ismeco/ycae070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 04/27/2024] [Accepted: 05/07/2024] [Indexed: 05/30/2024]
9
Ujvári G, Capo L, Grassi A, Cristani C, Pagliarani I, Turrini A, Blandino M, Giovannetti M, Agnolucci M. Agronomic strategies to enhance the early vigor and yield of maize. Part I: the role of seed applied biostimulant, hybrid and starter fertilization on rhizosphere bacteria profile and diversity. FRONTIERS IN PLANT SCIENCE 2023;14:1240310. [PMID: 38023909 PMCID: PMC10651756 DOI: 10.3389/fpls.2023.1240310] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 10/18/2023] [Indexed: 12/01/2023]
10
Ni G, Leung PM, Daebeler A, Guo J, Hu S, Cook P, Nicol GW, Daims H, Greening C. Nitrification in acidic and alkaline environments. Essays Biochem 2023;67:753-768. [PMID: 37449414 PMCID: PMC10427799 DOI: 10.1042/ebc20220194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 06/27/2023] [Accepted: 06/29/2023] [Indexed: 07/18/2023]
11
Yu C, Jiang X, Xu H, Ding G. Trichoderma longibrachiatum Inoculation Improves Drought Resistance and Growth of Pinus massoniana Seedlings through Regulating Physiological Responses and Soil Microbial Community. J Fungi (Basel) 2023;9:694. [PMID: 37504683 PMCID: PMC10381829 DOI: 10.3390/jof9070694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Revised: 06/17/2023] [Accepted: 06/18/2023] [Indexed: 07/29/2023]  Open
12
Wang X, Wang S, Yang Y, Tian H, Jetten MSM, Song C, Zhu G. Hot moment of N2O emissions in seasonally frozen peatlands. THE ISME JOURNAL 2023;17:792-802. [PMID: 36864114 PMCID: PMC10203296 DOI: 10.1038/s41396-023-01389-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Revised: 02/15/2023] [Accepted: 02/21/2023] [Indexed: 03/04/2023]
13
Algonin A, Zhao B, Cui Y, Xie F, Yue X. Enhancement of iron-based nitrogen removal with an electric-magnetic field in an upflow microaerobic sludge reactor (UMSR). ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023;30:35054-35063. [PMID: 36525195 DOI: 10.1007/s11356-022-23836-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2022] [Accepted: 10/21/2022] [Indexed: 06/17/2023]
14
Samadi A, Kermanshahi-Pour A, Budge SM, Huang Y, Jamieson R. Biodegradation of 1,4-dioxane by a native digestate microbial community under different electron accepting conditions. Biodegradation 2023;34:283-300. [PMID: 36808270 DOI: 10.1007/s10532-023-10019-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Accepted: 02/06/2023] [Indexed: 02/21/2023]
15
Bhattacharya R, Mazumder D. Performance evaluation of moving bed bioreactor for simultaneous nitrification denitrification and phosphorus removal from simulated fertilizer industry wastewater. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023;30:49060-49074. [PMID: 36763265 DOI: 10.1007/s11356-023-25708-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2022] [Accepted: 01/30/2023] [Indexed: 02/11/2023]
16
Shen Q, Zhang K, Voroney P, Meng L, Xu J, Brookes P. Biodiesel Co-Product enhances microbial stability and beneficial microbial communities along a gradient of soil water content. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023;856:159204. [PMID: 36198351 DOI: 10.1016/j.scitotenv.2022.159204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2022] [Revised: 09/26/2022] [Accepted: 09/29/2022] [Indexed: 06/16/2023]
17
Hogendoorn C, Pol A, de Graaf R, White PB, Mesman R, van Galen PM, van Alen TA, Cremers G, Jansen RS, Jetten MSM, Op den Camp HJM. "Candidatus Hydrogenisulfobacillus filiaventi" strain R50 gen. nov. sp. nov., a highly efficient producer of extracellular organic compounds from H2 and CO2. Front Microbiol 2023;14:1151097. [PMID: 37032882 PMCID: PMC10080006 DOI: 10.3389/fmicb.2023.1151097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Accepted: 03/08/2023] [Indexed: 04/11/2023]  Open
18
Yu H, Le Roux JJ, Zhao M, Li W. Mikania sesquiterpene lactones enhance soil bacterial diversity and fungal and bacterial activities. Biol Invasions 2022. [DOI: 10.1007/s10530-022-02907-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
19
Liu Q, Zhang L, Wang L, Wu Q, Li K, Guo X. Autotoxin affects the rhizosphere microbial community structure by influencing the secretory characteristics of grapevine roots. Front Microbiol 2022;13:953424. [PMID: 35958141 PMCID: PMC9360756 DOI: 10.3389/fmicb.2022.953424] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Accepted: 07/07/2022] [Indexed: 11/16/2022]  Open
20
Development of a Markerless Deletion Mutagenesis System in Nitrate-Reducing Bacterium Rhodanobacter denitrificans. Appl Environ Microbiol 2022;88:e0040122. [PMID: 35737807 PMCID: PMC9317963 DOI: 10.1128/aem.00401-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
21
Shen J, Luo Y, Tao Q, White PJ, Sun G, Li M, Luo J, He Y, Li B, Li Q, Xu Q, Cai Y, Li H, Wang C. The exacerbation of soil acidification correlates with structural and functional succession of the soil microbiome upon agricultural intensification. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022;828:154524. [PMID: 35288138 DOI: 10.1016/j.scitotenv.2022.154524] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Revised: 02/28/2022] [Accepted: 03/08/2022] [Indexed: 06/14/2023]
22
Zhang N, Lu D, Kan P, Yangyao J, Yao Z, Zhu DZ, Gan H, Zhu B. Impact analysis of hydraulic loading rate on constructed wetland: Insight into the response of bulk substrate and root-associated microbiota. WATER RESEARCH 2022;216:118337. [PMID: 35358875 DOI: 10.1016/j.watres.2022.118337] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2021] [Revised: 12/20/2021] [Accepted: 03/18/2022] [Indexed: 06/14/2023]
23
Ahmar Siddiqui M, Kumar Biswal B, Siriweera B, Chen G, Wu D. Integrated self-forming dynamic membrane (SFDM) and membrane-aerated biofilm reactor (MABR) system enhanced single-stage autotrophic nitrogen removal. BIORESOURCE TECHNOLOGY 2022;345:126554. [PMID: 34906703 DOI: 10.1016/j.biortech.2021.126554] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Revised: 12/06/2021] [Accepted: 12/08/2021] [Indexed: 06/14/2023]
24
Ramírez-Fernández L, Orellana LH, Johnston ER, Konstantinidis KT, Orlando J. Diversity of microbial communities and genes involved in nitrous oxide emissions in Antarctic soils impacted by marine animals as revealed by metagenomics and 100 metagenome-assembled genomes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021;788:147693. [PMID: 34029816 DOI: 10.1016/j.scitotenv.2021.147693] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2021] [Revised: 04/02/2021] [Accepted: 05/07/2021] [Indexed: 06/12/2023]
25
Linking meta-omics to the kinetics of denitrification intermediates reveals pH-dependent causes of N2O emissions and nitrite accumulation in soil. ISME JOURNAL 2021;16:26-37. [PMID: 34211102 PMCID: PMC8692524 DOI: 10.1038/s41396-021-01045-2] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Revised: 06/07/2021] [Accepted: 06/16/2021] [Indexed: 11/24/2022]
26
Xing XY, Tang YF, Xu HF, Qin HL, Liu Y, Zhang WZ, Chen AL, Zhu BL. Warming Shapes nirS- and nosZ-Type Denitrifier Communities and Stimulates N2O Emission in Acidic Paddy Soil. Appl Environ Microbiol 2021;87:e0296520. [PMID: 33837014 PMCID: PMC8174758 DOI: 10.1128/aem.02965-20] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Accepted: 03/13/2021] [Indexed: 11/20/2022]  Open
27
Viotti C, Bach C, Maillard F, Ziegler-Devin I, Mieszkin S, Buée M. Sapwood and heartwood affect differentially bacterial and fungal community structure and successional dynamics during Quercus petraea decomposition. Environ Microbiol 2021;23:6177-6193. [PMID: 33848050 DOI: 10.1111/1462-2920.15522] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Revised: 04/07/2021] [Accepted: 04/08/2021] [Indexed: 11/28/2022]
28
Ogola HJO, Selvarajan R, Tekere M. Local Geomorphological Gradients and Land Use Patterns Play Key Role on the Soil Bacterial Community Diversity and Dynamics in the Highly Endemic Indigenous Afrotemperate Coastal Scarp Forest Biome. Front Microbiol 2021;12:592725. [PMID: 33716998 PMCID: PMC7943610 DOI: 10.3389/fmicb.2021.592725] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2020] [Accepted: 01/28/2021] [Indexed: 12/26/2022]  Open
29
Hetz SA, Horn MA. Burkholderiaceae Are Key Acetate Assimilators During Complete Denitrification in Acidic Cryoturbated Peat Circles of the Arctic Tundra. Front Microbiol 2021;12:628269. [PMID: 33613495 PMCID: PMC7892595 DOI: 10.3389/fmicb.2021.628269] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Accepted: 01/18/2021] [Indexed: 01/23/2023]  Open
30
Microbiota in Waterlogged Archaeological Wood: Use of Next-Generation Sequencing to Evaluate the Risk of Biodegradation. APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app10134636] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
31
Fujimura R, Azegami Y, Wei W, Kakuta H, Shiratori Y, Ohte N, Senoo K, Otsuka S, Isobe K. Distinct Community Composition of Previously Uncharacterized Denitrifying Bacteria and Fungi across Different Land-Use Types. Microbes Environ 2020;35:ME19064. [PMID: 31996500 PMCID: PMC7104279 DOI: 10.1264/jsme2.me19064] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2019] [Accepted: 12/04/2019] [Indexed: 11/30/2022]  Open
32
Wu L, Shen M, Li J, Huang S, Li Z, Yan Z, Peng Y. Cooperation between partial-nitrification, complete ammonia oxidation (comammox), and anaerobic ammonia oxidation (anammox) in sludge digestion liquid for nitrogen removal. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019;254:112965. [PMID: 31401520 DOI: 10.1016/j.envpol.2019.112965] [Citation(s) in RCA: 55] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2019] [Revised: 07/20/2019] [Accepted: 07/25/2019] [Indexed: 06/10/2023]
33
Dukunde A, Schneider D, Schmidt M, Veldkamp E, Daniel R. Tree Species Shape Soil Bacterial Community Structure and Function in Temperate Deciduous Forests. Front Microbiol 2019;10:1519. [PMID: 31338079 PMCID: PMC6629791 DOI: 10.3389/fmicb.2019.01519] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2018] [Accepted: 06/18/2019] [Indexed: 01/23/2023]  Open
34
Carlson HK, Price MN, Callaghan M, Aaring A, Chakraborty R, Liu H, Kuehl JV, Arkin AP, Deutschbauer AM. The selective pressures on the microbial community in a metal-contaminated aquifer. ISME JOURNAL 2018;13:937-949. [PMID: 30523276 PMCID: PMC6461962 DOI: 10.1038/s41396-018-0328-1] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/10/2018] [Revised: 11/12/2018] [Accepted: 11/22/2018] [Indexed: 12/25/2022]
35
Ki BM, Ryu HW, Cho KS. Extended local similarity analysis (eLSA) reveals unique associations between bacterial community structure and odor emission during pig carcasses decomposition. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART A, TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING 2018;53:718-727. [PMID: 29469603 DOI: 10.1080/10934529.2018.1439856] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
36
Bacterial Community Shift and Coexisting/Coexcluding Patterns Revealed by Network Analysis in a Uranium-Contaminated Site after Bioreduction Followed by Reoxidation. Appl Environ Microbiol 2018;84:AEM.02885-17. [PMID: 29453264 DOI: 10.1128/aem.02885-17] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2017] [Accepted: 02/10/2018] [Indexed: 11/20/2022]  Open
37
Van Duc L, Song B, Ito H, Hama T, Otani M, Kawagoshi Y. High growth potential and nitrogen removal performance of marine anammox bacteria in shrimp-aquaculture sediment. CHEMOSPHERE 2018;196:69-77. [PMID: 29291516 DOI: 10.1016/j.chemosphere.2017.12.159] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2017] [Revised: 12/12/2017] [Accepted: 12/24/2017] [Indexed: 06/07/2023]
38
Espenberg M, Truu M, Mander Ü, Kasak K, Nõlvak H, Ligi T, Oopkaup K, Maddison M, Truu J. Differences in microbial community structure and nitrogen cycling in natural and drained tropical peatland soils. Sci Rep 2018;8:4742. [PMID: 29549345 PMCID: PMC5856767 DOI: 10.1038/s41598-018-23032-y] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Accepted: 03/06/2018] [Indexed: 01/02/2023]  Open
39
Phenotypic and genotypic richness of denitrifiers revealed by a novel isolation strategy. ISME JOURNAL 2017;11:2219-2232. [PMID: 28696424 DOI: 10.1038/ismej.2017.82] [Citation(s) in RCA: 90] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2017] [Revised: 04/21/2017] [Accepted: 04/24/2017] [Indexed: 11/08/2022]
40
Zhai J, Wang Z, Shi P, Long C. Microbial Community in a Biofilter for Removal of Low Load Nitrobenzene Waste Gas. PLoS One 2017;12:e0170417. [PMID: 28114416 PMCID: PMC5256912 DOI: 10.1371/journal.pone.0170417] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2016] [Accepted: 01/04/2017] [Indexed: 11/18/2022]  Open
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Wu Y, Zeng J, Zhu Q, Zhang Z, Lin X. pH is the primary determinant of the bacterial community structure in agricultural soils impacted by polycyclic aromatic hydrocarbon pollution. Sci Rep 2017;7:40093. [PMID: 28051171 PMCID: PMC5209717 DOI: 10.1038/srep40093] [Citation(s) in RCA: 61] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2016] [Accepted: 12/01/2016] [Indexed: 11/23/2022]  Open
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Yuan J, Zhao M, Li R, Huang Q, Rensing C, Raza W, Shen Q. Antibacterial Compounds-Macrolactin Alters the Soil Bacterial Community and Abundance of the Gene Encoding PKS. Front Microbiol 2016;7:1904. [PMID: 27965639 PMCID: PMC5126139 DOI: 10.3389/fmicb.2016.01904] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2016] [Accepted: 11/15/2016] [Indexed: 12/24/2022]  Open
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Gill C, van de Wijgert JHHM, Blow F, Darby AC. Evaluation of Lysis Methods for the Extraction of Bacterial DNA for Analysis of the Vaginal Microbiota. PLoS One 2016;11:e0163148. [PMID: 27643503 PMCID: PMC5028042 DOI: 10.1371/journal.pone.0163148] [Citation(s) in RCA: 50] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2016] [Accepted: 09/02/2016] [Indexed: 12/12/2022]  Open
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Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community. mBio 2016;7:e02234-15. [PMID: 27048805 PMCID: PMC4817265 DOI: 10.1128/mbio.02234-15] [Citation(s) in RCA: 59] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
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Impaired reduction of N2O to N2 in acid soils is due to a posttranscriptional interference with the expression of nosZ. mBio 2014;5:e01383-14. [PMID: 24961695 PMCID: PMC4073493 DOI: 10.1128/mbio.01383-14] [Citation(s) in RCA: 129] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
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Lv X, Yu J, Fu Y, Ma B, Qu F, Ning K, Wu H. A meta-analysis of the bacterial and archaeal diversity observed in wetland soils. ScientificWorldJournal 2014;2014:437684. [PMID: 24982954 PMCID: PMC4058131 DOI: 10.1155/2014/437684] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2014] [Revised: 04/10/2014] [Accepted: 04/24/2014] [Indexed: 12/31/2022]  Open
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Anjali G, Sabumon PC. Unprecedented development of anammox in presence of organic carbon using seed biomass from a tannery Common Effluent Treatment Plant (CETP). BIORESOURCE TECHNOLOGY 2014;153:30-38. [PMID: 24333699 DOI: 10.1016/j.biortech.2013.11.061] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2013] [Revised: 11/20/2013] [Accepted: 11/24/2013] [Indexed: 06/03/2023]
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Prakash O, Green SJ, Jasrotia P, Overholt WA, Canion A, Watson DB, Brooks SC, Kostka JE. Rhodanobacter denitrificans sp. nov., isolated from nitrate-rich zones of a contaminated aquifer. Int J Syst Evol Microbiol 2012;62:2457-2462. [DOI: 10.1099/ijs.0.035840-0] [Citation(s) in RCA: 113] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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Kostka JE, Green SJ, Rishishwar L, Prakash O, Katz LS, Mariño-Ramírez L, Jordan IK, Munk C, Ivanova N, Mikhailova N, Watson DB, Brown SD, Palumbo AV, Brooks SC. Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities. J Bacteriol 2012;194:4461-2. [PMID: 22843592 PMCID: PMC3416251 DOI: 10.1128/jb.00871-12] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2012] [Accepted: 06/04/2012] [Indexed: 11/20/2022]  Open
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Actinobacterial nitrate reducers and proteobacterial denitrifiers are abundant in N2O-metabolizing palsa peat. Appl Environ Microbiol 2012;78:5584-96. [PMID: 22660709 DOI: 10.1128/aem.00810-12] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
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