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Gardeux V, Bevers RPJ, David FPA, Rosschaert E, Rochepeau R, Deplancke B. DGRPool, a web tool leveraging harmonized Drosophila Genetic Reference Panel phenotyping data for the study of complex traits. eLife 2024; 12:RP88981. [PMID: 39431984 PMCID: PMC11493408 DOI: 10.7554/elife.88981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2024] Open
Abstract
Genome-wide association studies have advanced our understanding of complex traits, but studying how a GWAS variant can affect a specific trait in the human population remains challenging due to environmental variability. Drosophila melanogaster is in this regard an excellent model organism for studying the relationship between genetic and phenotypic variation due to its simple handling, standardized growth conditions, low cost, and short lifespan. The Drosophila Genetic Reference Panel (DGRP) in particular has been a valuable tool for studying complex traits, but proper harmonization and indexing of DGRP phenotyping data is necessary to fully capitalize on this resource. To address this, we created a web tool called DGRPool (dgrpool.epfl.ch), which aggregates phenotyping data of 1034 phenotypes across 135 DGRP studies in a common environment. DGRPool enables users to download data and run various tools such as genome-wide (GWAS) and phenome-wide (PheWAS) association studies. As a proof-of-concept, DGRPool was used to study the longevity phenotype and uncovered both established and unexpected correlations with other phenotypes such as locomotor activity, starvation resistance, desiccation survival, and oxidative stress resistance. DGRPool has the potential to facilitate new genetic and molecular insights of complex traits in Drosophila and serve as a valuable, interactive tool for the scientific community.
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Affiliation(s)
- Vincent Gardeux
- Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL)LausanneSwitzerland
- Swiss Institute of BioinformaticsLausanneSwitzerland
| | - Roel PJ Bevers
- Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL)LausanneSwitzerland
| | - Fabrice PA David
- Swiss Institute of BioinformaticsLausanneSwitzerland
- Bioinformatics Competence Center, EPFLLausanneSwitzerland
| | - Emily Rosschaert
- Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL)LausanneSwitzerland
- Laboratory of Behavioral and Developmental Genetics, Center for Human Genetics, KU LeuvenLeuvenBelgium
| | - Romain Rochepeau
- Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL)LausanneSwitzerland
| | - Bart Deplancke
- Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL)LausanneSwitzerland
- Swiss Institute of BioinformaticsLausanneSwitzerland
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Aggarwal DD, Mishra P, Singh M. An analysis of direct and indirect effects in Drosophila melanogaster undergoing a few cycles of experimental evolution for stress-related traits. Comp Biochem Physiol B Biochem Mol Biol 2023; 263:110795. [PMID: 35970341 DOI: 10.1016/j.cbpb.2022.110795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 08/04/2022] [Accepted: 08/08/2022] [Indexed: 10/15/2022]
Abstract
The physiological mechanisms underpinning adaptations to starvation and cold stresses have been extensively studied in Drosophila, yet the understanding of correlated changes in stress-related and life-history traits, as well as the energetics of stress tolerance, still remains elusive. To answer the questions empirically in this context, we allowed D. melanogaster to evolve for either increased starvation or cold tolerance (24-generations / regime) in an experimental evolution system, and examined whether selection of either trait affects un-selected stress trait, as well as the impacts potential changes in life-history and mating success-related traits. Our results revealed remarkable changes in starvation/cold tolerance (up to 1.5-fold) as a direct effect of selection, while cold tolerance had been dramatically reduced (1.26-fold) in the starvation tolerant (ST) lines compared to control counterparts, although no such changes were evident in cold-tolerant (CT) lines. ST lines exhibited a higher level of body lipids and a reduced level of trehalose content, while CT lines accumulated a greater levels of body lipid and trehalose contents. Noticeably, we found that selection for starvation or cold tolerance positively correlates with larval development time, longevity, and copulation duration, indicating that these traits are among the most common targets of selection trajectories shaping stress tolerance. Altogether, this study highlights the complexity of mechanisms evolved in ST lines that contribute to enhanced starvation tolerance, but also negatively impact cold tolerance. Nevertheless, mechanisms foraging enhanced cold tolerance in CT lines appear not to target starvation tolerance. Moreover, the parallel changes in life history/mating success traits across stress regimes could indicate some generic pathways evolved in stressful environments, targeting life-history and mating success characteristics to optimize fitness.
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Affiliation(s)
- Dau Dayal Aggarwal
- Department of Biochemistry, University of Delhi South Campus, New Delhi 110021, India.
| | - Prachi Mishra
- Department of Biochemistry, University of Delhi South Campus, New Delhi 110021, India
| | - Manvender Singh
- Department of Biotechnology, University Institute of Technology, Maharshi Dayanand University, Rohtak 124001, India
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3
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Lund-Hansen KK, Kutzer MAM, Armitage SAO, Gornard S, Keilani H, Abbott JK. Female-limited X chromosome evolution reveals that lifespan is mainly modulated by interlocus rather than intralocus sexual conflict. Behav Ecol Sociobiol 2022; 76:120. [PMID: 35991525 PMCID: PMC9385781 DOI: 10.1007/s00265-022-03231-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2022] [Revised: 07/29/2022] [Accepted: 08/08/2022] [Indexed: 11/21/2022]
Abstract
Abstract Sexual dimorphism in somatic investment may be shaped by two distinct forms of sexual conflict; under intralocus sexual conflict (IASC), males and females have different optimal levels of somatic investment but are constrained from reaching their respective optima by their shared genome, while under interlocus sexual conflict (IRSC), males and females have different optimal sexual strategies, which could have direct or indirect effects on levels of somatic investment. We investigated effects of IASC and IRSC on two aspects of somatic investment, immune defence strategies and longevity, using previously established female-limited experimental evolution lines in Drosophila melanogaster. We found little evidence for any effect of either type of sexual conflict on investment in the immune defence resistance or tolerance. Nor did we find convincing evidence that longevity is subject to IASC in this species. However, we did find evidence that increased female control over mating rate had important and opposite effects on longevity between the sexes. Specifically, females that had adapted to high levels of female control over mating had a longer lifespan when kept in mixed-sex groups, while males had shorter longevity, perhaps due to increased investment in post-copulatory sexual selection. These novel results show that female control over mating rates may have important and unexpected effects on patterns of somatic investment. Significance statement Sexual conflict occurs between the two sexes over numerous life history traits, and it is complex to disentangle how these traits interact and affect each other. Here we use a long-term evolution experiment to investigate sexual dimorphism in somatic maintenance. We found no effect of feminising the X chromosome on female immune defence. However, we did find that increased female control over mating rate resulted in longer female lifespan, but reduced male lifespan, and that these effects were dependent on social context (isolated or in mixed-sex groups). Unlike previous studies on the effect of sexual conflict on longevity, our experiment did not manipulate environmental conditions nor the adult sex ratio, which is likely to reduce both pre- and post-copulatory sexual selection. Supplementary Information The online version contains supplementary material available at 10.1007/s00265-022-03231-4.
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Dasgupta P, Halder S, Dari D, Nabeel P, Vajja SS, Nandy B. Evolution of a novel female reproductive strategy in Drosophila melanogaster populations subjected to long-term protein restriction. Evolution 2022; 76:1836-1848. [PMID: 35796749 DOI: 10.1111/evo.14560] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2021] [Accepted: 05/19/2022] [Indexed: 01/22/2023]
Abstract
Reproductive output is often constrained by availability of macronutrients, especially protein. Long-term protein restriction, therefore, is expected to select for traits maximizing reproduction even under nutritional challenge. We subjected four replicate populations of Drosophila melanogaster to a complete deprivation of yeast supplement, thereby mimicking a protein-restricted ecology. Following 24 generations, compared to their matched controls, females from experimental populations showed increased reproductive output early in life, both in presence and absence of yeast supplement. The observed increase in reproductive output was without associated alterations in egg size, development time, preadult survivorship, body mass at eclosion, and life span of the females. Further, selection was ineffective on lifelong cumulative fecundity. However, females from experiment regime were found to have a significantly faster rate of reproductive senescence following the attainment of the reproductive peak early in life. Therefore, adaptation to yeast deprivation ecology in our study involved a novel reproductive strategy whereby females attained higher reproductive output early in life followed by faster reproductive aging. To the best of our knowledge, this is one of the cleanest demonstrations of optimization of fitness by fine-tuning of reproductive schedule during adaptation to a prolonged nutritional deprivation.
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Affiliation(s)
- Purbasha Dasgupta
- Department of Biological Sciences, Indian Institute of Science Education and Research Berhampur, Berhampur, 760010, India
| | - Subhasish Halder
- Department of Biological Sciences, Indian Institute of Science Education and Research Berhampur, Berhampur, 760010, India
| | - Debapriya Dari
- Department of Biological Sciences, Indian Institute of Science Education and Research Berhampur, Berhampur, 760010, India
| | - Poolakkal Nabeel
- Department of Biological Sciences, Indian Institute of Science Education and Research Berhampur, Berhampur, 760010, India.,Central University of Kerala, Tejaswini Hills,Periye, Kasaragod, Kerala, 671316, India
| | - Sai Samhitha Vajja
- Department of Biological Sciences, Indian Institute of Science Education and Research Berhampur, Berhampur, 760010, India.,Current Address: Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Bhauri, 462066, India
| | - Bodhisatta Nandy
- Department of Biological Sciences, Indian Institute of Science Education and Research Berhampur, Berhampur, 760010, India
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5
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McHugh KM, Burke MK. From microbes to mammals: The experimental evolution of aging and longevity across species. Evolution 2022; 76:692-707. [PMID: 35112358 DOI: 10.1111/evo.14442] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Revised: 11/09/2021] [Accepted: 12/01/2021] [Indexed: 01/21/2023]
Abstract
Senescence, the functional deterioration of cells or organisms associated with increased age, is pervasive across the tree of life. Yet our understanding of the genetic and physiological basis underlying age-related declines in health and reproduction remains limited. Experimental evolution allows empirical examination of the question of why aging occurs; imposing selection for age-specific fitness traits shifts patterns of aging in experimental populations, enabling investigations of the variation underlying senescence and the mechanisms governing it. Whole-genome sequencing of experimentally evolved populations may reveal candidate genomic variants underlying particular aging patterns; unfortunately, most study systems suffer from limitations that weaken associations between genotypes and phenotypes. In this review, we provide a survey of experimental evolution studies that have altered population-level patterns of reproductive timing and senescence in a variety of species. We discuss the specific selection conditions that have increased longevity, the phenotypic responses and trade-offs that accompany these increases, and examine genomic data collected from these experiments. Additionally, we consider how selected field studies complement laboratory experiments on life-history evolution. Finally, we address the strengths and weaknesses of existing study systems, and evaluate which model organisms appear most promising for future genomic investigations of the evolutionary biology of aging.
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Affiliation(s)
- Kaitlin M McHugh
- Department of Integrative Biology, Oregon State University, Corvallis, Oregon, 97331
| | - Molly K Burke
- Department of Integrative Biology, Oregon State University, Corvallis, Oregon, 97331
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6
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Brennan RS, deMayo JA, Dam HG, Finiguerra MB, Baumann H, Pespeni MH. Loss of transcriptional plasticity but sustained adaptive capacity after adaptation to global change conditions in a marine copepod. Nat Commun 2022; 13:1147. [PMID: 35241657 PMCID: PMC8894427 DOI: 10.1038/s41467-022-28742-6] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Accepted: 02/04/2022] [Indexed: 12/04/2022] Open
Abstract
Adaptive evolution and phenotypic plasticity will fuel resilience in the geologically unprecedented warming and acidification of the earth’s oceans, however, we have much to learn about the interactions and costs of these mechanisms of resilience. Here, using 20 generations of experimental evolution followed by three generations of reciprocal transplants, we investigated the relationship between adaptation and plasticity in the marine copepod, Acartia tonsa, in future global change conditions (high temperature and high CO2). We found parallel adaptation to global change conditions in genes related to stress response, gene expression regulation, actin regulation, developmental processes, and energy production. However, reciprocal transplantation showed that adaptation resulted in a loss of transcriptional plasticity, reduced fecundity, and reduced population growth when global change-adapted animals were returned to ambient conditions or reared in low food conditions. However, after three successive transplant generations, global change-adapted animals were able to match the ambient-adaptive transcriptional profile. Concurrent changes in allele frequencies and erosion of nucleotide diversity suggest that this recovery occurred via adaptation back to ancestral conditions. These results demonstrate that while plasticity facilitated initial survival in global change conditions, it eroded after 20 generations as populations adapted, limiting resilience to new stressors and previously benign environments. Rapid adaptation will facilitate species resilience under global climate change, but its effects on plasticity are less commonly investigated. This study shows that 20 generations of experimental adaptation in a marine copepod drives a rapid loss of plasticity that carries costs and might have impacts on future resilience to environmental change.
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Affiliation(s)
- Reid S Brennan
- Department of Biology, University of Vermont, Burlington, VT, USA. .,Marine Evolutionary Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany.
| | - James A deMayo
- Department of Marine Sciences, University of Connecticut, Groton, CT, USA.,Department of Integrative Biology, University of Colorado Denver, Denver, CO, USA
| | - Hans G Dam
- Department of Marine Sciences, University of Connecticut, Groton, CT, USA
| | - Michael B Finiguerra
- Department of Ecology and Evolutionary Biology, University of Connecticut, Groton, CT, USA
| | - Hannes Baumann
- Department of Marine Sciences, University of Connecticut, Groton, CT, USA
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Shaposhnikov MV, Zakluta AS, Zemskaya NV, Guvatova ZG, Shilova VY, Yakovleva DV, Gorbunova AA, Koval LA, Ulyasheva NS, Evgen'ev MB, Zatsepina OG, Moskalev AA. Deletions of the cystathionine-β-synthase (CBS) and cystathionine-γ-lyase (CSE) genes, involved in the control of hydrogen sulfide biosynthesis, significantly affect lifespan and fitness components of Drosophila melanogaster. Mech Ageing Dev 2022; 203:111656. [PMID: 35247392 DOI: 10.1016/j.mad.2022.111656] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Revised: 02/02/2022] [Accepted: 02/28/2022] [Indexed: 12/14/2022]
Abstract
The gasotransmitter hydrogen sulfide (H2S) is an important biological mediator, playing an essential role in many physiological and pathological processes. It is produced by transsulfuration - an evolutionarily highly conserved pathway for the metabolism of sulfur-containing amino acids methionine and cysteine. Cystathionine-β-synthase (CBS) and cystathionine-γ-lyase (CSE) enzymes play a central role in cysteine metabolism and H2S production. Here we investigated the fitness components (longevity, stress resistance, viability of preimaginal stages, and reproductive function parameters) in D. melanogaster lines containing deletions of the CBS and CSE genes. Surprisingly, in most tests, CSE deletion improved, and CBS worsened the fitness. Lines with deletion of both CBS and CSE demonstrated better stress resistance and longevity than lines with single CBS deletion. At the same time, deletion of both CBS and CSE genes causes more serious disturbances of reproductive function parameters than single CBS deletion. Thus, a complex interaction of H2S-producing pathways and cellular stress response in determining the lifespan and fitness components of the whole organism was revealed.
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Affiliation(s)
- Mikhail V Shaposhnikov
- Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russian Federation; Institute of Biology of Komi Scientific Centre of the Ural Branch of the Russian Academy of Sciences, Syktyvkar, Russian Federation.
| | - Alexey S Zakluta
- Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russian Federation.
| | - Nadezhda V Zemskaya
- Institute of Biology of Komi Scientific Centre of the Ural Branch of the Russian Academy of Sciences, Syktyvkar, Russian Federation.
| | - Zulfiya G Guvatova
- Center for Precision Genome Editing and Genetic Technologies for Biomedicine Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russian Federation.
| | - Victoria Y Shilova
- Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russian Federation.
| | - Daria V Yakovleva
- Institute of Biology of Komi Scientific Centre of the Ural Branch of the Russian Academy of Sciences, Syktyvkar, Russian Federation.
| | - Anastasia A Gorbunova
- Institute of Biology of Komi Scientific Centre of the Ural Branch of the Russian Academy of Sciences, Syktyvkar, Russian Federation.
| | - Liubov A Koval
- Institute of Biology of Komi Scientific Centre of the Ural Branch of the Russian Academy of Sciences, Syktyvkar, Russian Federation.
| | - Natalia S Ulyasheva
- Institute of Biology of Komi Scientific Centre of the Ural Branch of the Russian Academy of Sciences, Syktyvkar, Russian Federation.
| | - Mikhail B Evgen'ev
- Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russian Federation.
| | - Olga G Zatsepina
- Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russian Federation.
| | - Alexey A Moskalev
- Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russian Federation; Institute of Biology of Komi Scientific Centre of the Ural Branch of the Russian Academy of Sciences, Syktyvkar, Russian Federation; Center for Precision Genome Editing and Genetic Technologies for Biomedicine Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russian Federation.
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8
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Sheshadri D, Onkar A, Ganesh S. Alterations in brain glycogen levels influence life-history traits and reduce the lifespan in female Drosophila melanogaster. Biol Open 2021; 10:273730. [PMID: 34817590 PMCID: PMC8689487 DOI: 10.1242/bio.059055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2021] [Accepted: 11/15/2021] [Indexed: 11/20/2022] Open
Abstract
Sexual dimorphism in lifespan, wherein females outlive males, is evident across all animal taxa. The longevity difference between sexes is controlled by multiple physiological processes with complex relationships to one another. In recent years, glycogen, the storage form of glucose, has been shown to cause rapid aging upon forced synthesis in healthy neurons. Glycogen in the form of corpora amylacea in the aging brain is also widely reported. While these studies did suggest a novel role for glycogen in aging, most of them have focused on pooled samples, and have not looked at sex-specific effects, if any. Given the widespread occurrence of sex-biased expression of genes and the underlying physiology, it is important to look at the sex-specific effects of metabolic processes. In the present study, using transgenic fly lines for the human glycogen synthase, we investigated the sex-specific effects of glycogen on stress resistance, fitness, and survival. We demonstrate that Drosophila melanogaster females with altered levels of glycogen in the brain display a shortened lifespan, increased resistance to starvation, and higher oxidative stress than male flies. The present study thus provides a novel insight into the sex-specific effect of glycogen in survival and aging and how differences in metabolic processes could contribute to sex-specific traits.
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Affiliation(s)
- Deepashree Sheshadri
- Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur, Uttar Pradesh 208016, India
| | - Akanksha Onkar
- Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur, Uttar Pradesh 208016, India
| | - Subramaniam Ganesh
- Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur, Uttar Pradesh 208016, India
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9
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Malod K, Roets PD, Bosua H, Archer CR, Weldon CW. Selecting on age of female reproduction affects lifespan in both sexes and age-dependent reproductive effort in female (but not male) Ceratitis cosyra. Behav Ecol Sociobiol 2021. [DOI: 10.1007/s00265-021-03063-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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10
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Stazione L, Norry FM, Sambucetti P. Do Longevity and Fecundity Change by Selection on Mating Success at Elevated Temperature? Correlated Selection Responses in Drosophila buzzatii. Evol Biol 2021. [DOI: 10.1007/s11692-021-09540-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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11
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Hamida ZC, Farine JP, Ferveur JF, Soltani N. Pre-imaginal exposure to Oberon® disrupts fatty acid composition, cuticular hydrocarbon profile and sexual behavior in Drosophila melanogaster adults. Comp Biochem Physiol C Toxicol Pharmacol 2021; 243:108981. [PMID: 33493665 DOI: 10.1016/j.cbpc.2021.108981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Revised: 01/09/2021] [Accepted: 01/14/2021] [Indexed: 10/22/2022]
Abstract
Oberon® is a commercial formulation of spiromesifen, a pesticide inhibitor of lipid biosynthesis via acetyl CoA carboxylase, widely used in agricultural crop protection. However, its mode of action requires further analysis. We currently examined the effect of this product on Drosophila melanogaster as a non-target and model organism. Different concentrations of spiromesifen were administered by ingestion (and contact) during pre-imaginal development, and we evaluated its delayed action on adults. Our results suggest that spiromesifen induced insecticidal activity on D. melanogaster. Moreover, spiromesifen treatment significantly increased the duration of larval and pupal development at all tested concentrations while it shortened longevity in exposed males as compared to control males. Also, pre-imaginal exposure to spiromesifen quantitatively affected fatty acids supporting its primary mode of action on lipid synthesis. In addition, this product was found to modify cuticular hydrocarbon profiles in exposed female and male flies as well as their sexual behavior and reproductive capacity.
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Affiliation(s)
- Z C Hamida
- Laboratory of Applied Animal Biology, Department of Biology, Faculty of Sciences, Badji Mokhtar University, Annaba, Algeria; Centre des Sciences du Goût et de l'Alimentation, Agrosup-UMR 6265 CNRS, UMR 1324 INRA, Université de Bourgogne, Dijon, France
| | - J P Farine
- Centre des Sciences du Goût et de l'Alimentation, Agrosup-UMR 6265 CNRS, UMR 1324 INRA, Université de Bourgogne, Dijon, France
| | - J F Ferveur
- Centre des Sciences du Goût et de l'Alimentation, Agrosup-UMR 6265 CNRS, UMR 1324 INRA, Université de Bourgogne, Dijon, France
| | - N Soltani
- Laboratory of Applied Animal Biology, Department of Biology, Faculty of Sciences, Badji Mokhtar University, Annaba, Algeria.
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12
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Brengdahl MI, Kimber CM, Elias P, Thompson J, Friberg U. Deleterious mutations show increasing negative effects with age in Drosophila melanogaster. BMC Biol 2020; 18:128. [PMID: 32993647 PMCID: PMC7526172 DOI: 10.1186/s12915-020-00858-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2020] [Accepted: 08/28/2020] [Indexed: 01/07/2023] Open
Abstract
BACKGROUND In order for aging to evolve in response to a declining strength of selection with age, a genetic architecture that allows for mutations with age-specific effects on organismal performance is required. Our understanding of how selective effects of individual mutations are distributed across ages is however poor. Established evolutionary theories assume that mutations causing aging have negative late-life effects, coupled to either positive or neutral effects early in life. New theory now suggests evolution of aging may also result from deleterious mutations with increasing negative effects with age, a possibility that has not yet been empirically explored. RESULTS To directly test how the effects of deleterious mutations are distributed across ages, we separately measure age-specific effects on fecundity for each of 20 mutations in Drosophila melanogaster. We find that deleterious mutations in general have a negative effect that increases with age and that the rate of increase depends on how deleterious a mutation is early in life. CONCLUSIONS Our findings suggest that aging does not exclusively depend on genetic variants assumed by the established evolutionary theories of aging. Instead, aging can result from deleterious mutations with negative effects that amplify with age. If increasing negative effect with age is a general property of deleterious mutations, the proportion of mutations with the capacity to contribute towards aging may be considerably larger than previously believed.
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Affiliation(s)
| | | | - Phoebe Elias
- IFM Biology, Linköping University, Linköping, Sweden
| | | | - Urban Friberg
- IFM Biology, Linköping University, Linköping, Sweden.
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13
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Trade-off between somatic and germline repair in a vertebrate supports the expensive germ line hypothesis. Proc Natl Acad Sci U S A 2020; 117:8973-8979. [PMID: 32245815 PMCID: PMC7183174 DOI: 10.1073/pnas.1918205117] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Abstract
“How can we stop aging?” is still a largely unanswered question. Understanding the possible mechanisms that lead to the gradual deterioration of the organism over time is key to answer this question and finding possible antidotes. A central tenet of the evolutionary theory of aging is the possible trade-off between the maintenance of the immortal germ line and the disposable soma. Male vertebrates continue somatic and germline proliferation throughout life, offering an ideal opportunity to study this hypothesis. We show that in male zebrafish exposed to stressful conditions, the experimental removal of the germ line improves somatic recovery. Our results provide direct evidence for the cost of the germ line in a vertebrate. The disposable soma theory is a central tenet of the biology of aging where germline immortality comes at the cost of an aging soma [T. B. L. Kirkwood, Nature 270, 301–304 (1977); T. B. L. Kirkwood, Proc. R. Soc. Lond. B Biol. Sci. 205, 531–546 (1979); T. B. L. Kirkwood, S. N. Austad, Nature 408, 233–238 (2000)]. Limited resources and a possible trade-off between the repair and maintenance of the germ cells and growth and maintenance of the soma may explain the deterioration of the soma over time. Here we show that germline removal allows accelerated somatic healing under stress. We tested “the expensive germ line” hypothesis by generating germline-free zebrafish Danio rerio and testing the effect of the presence and absence of the germ line on somatic repair under benign and stressful conditions. We exposed male fish to sublethal low-dose ionizing radiation, a genotoxic stress affecting the soma and the germ line, and tested how fast the soma recovered following partial fin ablation. We found that somatic recovery from ablation occurred substantially faster in irradiated germline-free fish than in the control germline-carrying fish where somatic recovery was stunned. The germ line did show signs of postirradiation recovery in germline-carrying fish in several traits related to offspring number and fitness. These results support the theoretical conjecture that germline maintenance is costly and directly trades off with somatic maintenance.
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14
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Flatt T. Life-History Evolution and the Genetics of Fitness Components in Drosophila melanogaster. Genetics 2020; 214:3-48. [PMID: 31907300 PMCID: PMC6944413 DOI: 10.1534/genetics.119.300160] [Citation(s) in RCA: 66] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2019] [Accepted: 10/03/2019] [Indexed: 12/28/2022] Open
Abstract
Life-history traits or "fitness components"-such as age and size at maturity, fecundity and fertility, age-specific rates of survival, and life span-are the major phenotypic determinants of Darwinian fitness. Analyzing the evolution and genetics of these phenotypic targets of selection is central to our understanding of adaptation. Due to its simple and rapid life cycle, cosmopolitan distribution, ease of maintenance in the laboratory, well-understood evolutionary genetics, and its versatile genetic toolbox, the "vinegar fly" Drosophila melanogaster is one of the most powerful, experimentally tractable model systems for studying "life-history evolution." Here, I review what has been learned about the evolution and genetics of life-history variation in D. melanogaster by drawing on numerous sources spanning population and quantitative genetics, genomics, experimental evolution, evolutionary ecology, and physiology. This body of work has contributed greatly to our knowledge of several fundamental problems in evolutionary biology, including the amount and maintenance of genetic variation, the evolution of body size, clines and climate adaptation, the evolution of senescence, phenotypic plasticity, the nature of life-history trade-offs, and so forth. While major progress has been made, important facets of these and other questions remain open, and the D. melanogaster system will undoubtedly continue to deliver key insights into central issues of life-history evolution and the genetics of adaptation.
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Affiliation(s)
- Thomas Flatt
- Department of Biology, University of Fribourg, CH-1700, Switzerland
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15
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Abstract
Between the 1930s and 1950s, scientists developed key principles of population genetics to try and explain the aging process. Almost a century later, these aging theories, including antagonistic pleiotropy and mutation accumulation, have been experimentally validated in animals. Although the theories have been much harder to test in humans despite research dating back to the 1970s, recent research is closing this evidence gap. Here we examine the strength of evidence for antagonistic pleiotropy in humans, one of the leading evolutionary explanations for the retention of genetic risk variation for non-communicable diseases. We discuss the analytical tools and types of data that are used to test for patterns of antagonistic pleiotropy and provide a primer of evolutionary theory on types of selection as a guide for understanding this mechanism and how it may manifest in other diseases. We find an abundance of non-experimental evidence for antagonistic pleiotropy in many diseases. In some cases, several studies have independently found corroborating evidence for this mechanism in the same or related sets of diseases including cancer and neurodegenerative diseases. Recent studies also suggest antagonistic pleiotropy may be involved in cardiovascular disease and diabetes. There are also compelling examples of disease risk variants that confer fitness benefits ranging from resistance to other diseases or survival in extreme environments. This provides increasingly strong support for the theory that antagonistic pleiotropic variants have enabled improved fitness but have been traded for higher burden of disease later in life. Future research in this field is required to better understand how this mechanism influences contemporary disease and possible consequences for their treatment.
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16
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Hoedjes KM, van den Heuvel J, Kapun M, Keller L, Flatt T, Zwaan BJ. Distinct genomic signals of lifespan and life history evolution in response to postponed reproduction and larval diet in Drosophila. Evol Lett 2019; 3:598-609. [PMID: 31867121 PMCID: PMC6906992 DOI: 10.1002/evl3.143] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2019] [Revised: 09/08/2019] [Accepted: 09/11/2019] [Indexed: 12/14/2022] Open
Abstract
Reproduction and diet are two major factors controlling the physiology of aging and life history, but how they interact to affect the evolution of longevity is unknown. Moreover, although studies of large-effect mutants suggest an important role of nutrient sensing pathways in regulating aging, the genetic basis of evolutionary changes in lifespan remains poorly understood. To address these questions, we analyzed the genomes of experimentally evolved Drosophila melanogaster populations subjected to a factorial combination of two selection regimes: reproductive age (early versus postponed), and diet during the larval stage ("low," "control," "high"), resulting in six treatment combinations with four replicate populations each. Selection on reproductive age consistently affected lifespan, with flies from the postponed reproduction regime having evolved a longer lifespan. In contrast, larval diet affected lifespan only in early-reproducing populations: flies adapted to the "low" diet lived longer than those adapted to control diet. Here, we find genomic evidence for strong independent evolutionary responses to either selection regime, as well as loci that diverged in response to both regimes, thus representing genomic interactions between the two. Overall, we find that the genomic basis of longevity is largely independent of dietary adaptation. Differentiated loci were not enriched for "canonical" longevity genes, suggesting that naturally occurring genic targets of selection for longevity differ qualitatively from variants found in mutant screens. Comparing our candidate loci to those from other "evolve and resequence" studies of longevity demonstrated significant overlap among independent experiments. This suggests that the evolution of longevity, despite its presumed complex and polygenic nature, might be to some extent convergent and predictable.
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Affiliation(s)
- Katja M. Hoedjes
- Department of Ecology and EvolutionUniversity of LausanneLausanneSwitzerland
| | - Joost van den Heuvel
- Laboratory of Genetics, Plant Sciences GroupWageningen UniversityWageningenThe Netherlands
- Institute for Cell and Molecular BiosciencesNewcastle UniversityNewcastle Upon TyneUnited Kingdom
| | - Martin Kapun
- Department of Ecology and EvolutionUniversity of LausanneLausanneSwitzerland
- Department of BiologyUniversity of FribourgFribourgSwitzerland
- Current Address: Department of Evolutionary Biology and Environmental StudiesUniversity of ZurichZurichSwitzerland
| | - Laurent Keller
- Department of Ecology and EvolutionUniversity of LausanneLausanneSwitzerland
| | - Thomas Flatt
- Department of Ecology and EvolutionUniversity of LausanneLausanneSwitzerland
- Department of BiologyUniversity of FribourgFribourgSwitzerland
| | - Bas J. Zwaan
- Laboratory of Genetics, Plant Sciences GroupWageningen UniversityWageningenThe Netherlands
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17
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Wylde Z, Spagopoulou F, Hooper AK, Maklakov AA, Bonduriansky R. Parental breeding age effects on descendants' longevity interact over 2 generations in matrilines and patrilines. PLoS Biol 2019; 17:e3000556. [PMID: 31765371 PMCID: PMC6901263 DOI: 10.1371/journal.pbio.3000556] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Revised: 12/09/2019] [Accepted: 11/07/2019] [Indexed: 01/09/2023] Open
Abstract
Individuals within populations vary enormously in mortality risk and longevity, but the causes of this variation remain poorly understood. A potentially important and phylogenetically widespread source of such variation is maternal age at breeding, which typically has negative effects on offspring longevity. Here, we show that paternal age can affect offspring longevity as strongly as maternal age does and that breeding age effects can interact over 2 generations in both matrilines and patrilines. We manipulated maternal and paternal ages at breeding over 2 generations in the neriid fly Telostylinus angusticollis. To determine whether breeding age effects can be modulated by the environment, we also manipulated larval diet and male competitive environment in the first generation. We found separate and interactive effects of parental and grand-parental ages at breeding on descendants' mortality rate and life span in both matrilines and patrilines. These breeding age effects were not modulated by grand-parental larval diet quality or competitive environment. Our findings suggest that variation in maternal and paternal ages at breeding could contribute substantially to intrapopulation variation in mortality and longevity.
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Affiliation(s)
- Zachariah Wylde
- Evolution & Ecology Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales, Australia
| | - Foteini Spagopoulou
- Uppsala Centre for Evolution and Genomics, Uppsala University, Uppsala, Sweden
| | - Amy K. Hooper
- Evolution & Ecology Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales, Australia
| | - Alexei A. Maklakov
- Uppsala Centre for Evolution and Genomics, Uppsala University, Uppsala, Sweden
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, United Kingdom
| | - Russell Bonduriansky
- Evolution & Ecology Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales, Australia
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18
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Abstract
Despite tremendous progress in recent years, our understanding of the evolution of ageing is still incomplete. A dominant paradigm maintains that ageing evolves due to the competing energy demands of reproduction and somatic maintenance leading to slow accumulation of unrepaired cellular damage with age. However, the centrality of energy trade-offs in ageing has been increasingly challenged as studies in different organisms have uncoupled the trade-off between reproduction and longevity. An emerging theory is that ageing instead is caused by biological processes that are optimized for early-life function but become harmful when they continue to run-on unabated in late life. This idea builds on the realization that early-life regulation of gene expression can break down in late life because natural selection is too weak to optimize it. Empirical evidence increasingly supports the hypothesis that suboptimal gene expression in adulthood can result in physiological malfunction leading to organismal senescence. We argue that the current state of the art in the study of ageing contradicts the widely held view that energy trade-offs between growth, reproduction, and longevity are the universal underpinning of senescence. Future research should focus on understanding the relative contribution of energy and function trade-offs to the evolution and expression of ageing.
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Affiliation(s)
- Alexei A Maklakov
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
| | - Tracey Chapman
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
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19
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Affiliation(s)
- Sudhakar Krittika
- Fly Laboratory, School of Chemical & Biotechnology, SASTRA Deemed to be University, Thanjavur, India
| | - Pankaj Yadav
- Fly Laboratory, School of Chemical & Biotechnology, SASTRA Deemed to be University, Thanjavur, India
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20
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Foley HB, Sun PY, Ramirez R, So BK, Venkataraman YR, Nixon EN, Davies KJA, Edmands S. Sex-specific stress tolerance, proteolysis, and lifespan in the invertebrate Tigriopus californicus. Exp Gerontol 2019; 119:146-156. [PMID: 30738921 DOI: 10.1016/j.exger.2019.02.006] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Revised: 01/04/2019] [Accepted: 02/06/2019] [Indexed: 11/30/2022]
Abstract
Because stress tolerance and longevity are mechanistically and phenotypically linked, the sex with higher acute stress tolerance might be expected to also live longer. On the other hand, the association between stress tolerance and lifespan may be complicated by tradeoffs between acute tolerance and long-term survival. Here we use the copepod Tigriopus californicus to test for sex differences in stress resistance, proteolytic activity and longevity. Unlike many model organisms, this species does not have sex chromosomes. However, substantial sex differences were still observed. Females were found to have superior tolerance to a range of acute stressors (high temperature, high salinity, low salinity, copper and bisphenol A (BPA)) across a variety of treatments including different populations, pure vs. hybrid crosses, and different shading environments. Upregulation of proteolytic capacity - one molecular mechanism for responding to acute stress - was also found to be sexually dimorphic. In the combined stress treatment of chronic copper exposure followed by acute heat exposure, proteolytic capacity was suppressed for males. Females, however, maintained a robust proteolytic stress response. While females consistently showed greater tolerance to short-term stress, lifespan was largely equivalent between the two sexes under both benign conditions and mild thermal stress. Our findings indicate that short-term stress tolerance does not predict long-term survival under relatively mild conditions.
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Affiliation(s)
- Helen B Foley
- Department of Biological Sciences, Wrigley Institute for Environmental Studies, University of Southern California, Los Angeles, CA 90089, USA
| | - Patrick Y Sun
- Department of Biological Sciences, Wrigley Institute for Environmental Studies, University of Southern California, Los Angeles, CA 90089, USA; Leonard Davis School of Gerontology of the Ethel Percy Andrus Gerontology Center, University of Southern California, Los Angeles, CA 90089, USA
| | - Rocio Ramirez
- Department of Biological Sciences, Wrigley Institute for Environmental Studies, University of Southern California, Los Angeles, CA 90089, USA
| | - Brandon K So
- Department of Biological Sciences, Wrigley Institute for Environmental Studies, University of Southern California, Los Angeles, CA 90089, USA
| | - Yaamini R Venkataraman
- Department of Biological Sciences, Wrigley Institute for Environmental Studies, University of Southern California, Los Angeles, CA 90089, USA
| | - Emily N Nixon
- Department of Biological Sciences, Wrigley Institute for Environmental Studies, University of Southern California, Los Angeles, CA 90089, USA
| | - Kelvin J A Davies
- Leonard Davis School of Gerontology of the Ethel Percy Andrus Gerontology Center, University of Southern California, Los Angeles, CA 90089, USA; Molecular & Computational Biology Division, Department of Biological Sciences, College of Letters, Arts, and Sciences, University of Southern California, Los Angeles, CA 90089, USA; Department of Biochemistry and Molecular Medicine, Keck School of Medicine of USC, University of Southern California, Los Angeles, CA 90089, USA
| | - Suzanne Edmands
- Department of Biological Sciences, Wrigley Institute for Environmental Studies, University of Southern California, Los Angeles, CA 90089, USA.
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21
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Rodríguez-Muñoz R, Boonekamp JJ, Liu XP, Skicko I, Fisher DN, Hopwood P, Tregenza T. Testing the effect of early-life reproductive effort on age-related decline in a wild insect. Evolution 2019; 73:317-328. [PMID: 30597559 PMCID: PMC6590129 DOI: 10.1111/evo.13679] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2018] [Accepted: 11/16/2018] [Indexed: 12/29/2022]
Abstract
The disposable soma theory of ageing predicts that when organisms invest in reproduction they do so by reducing their investment in body maintenance, inducing a trade‐off between reproduction and survival. Experiments on invertebrates in the lab provide support for the theory by demonstrating the predicted responses to manipulation of reproductive effort or lifespan. However, experimental studies in birds and evidence from observational (nonmanipulative) studies in nature do not consistently reveal trade‐offs. Most species studied previously in the wild are mammals and birds that reproduce over multiple discrete seasons. This contrasts with temperate invertebrates, which typically have annual generations and reproduce over a single season. We expand the taxonomic range of senescence study systems to include life histories typical of most temperate invertebrates. We monitored reproductive effort, ageing, and survival in a natural field cricket population over ten years to test the prediction that individuals investing more in early‐reproduction senesce faster and die younger. We found no evidence of a trade‐off between early‐life reproductive effort and survival, and only weak evidence for a trade‐off with phenotypic senescence. We discuss the possibility that organisms with multiple discrete breeding seasons may have greater opportunities to express trade‐offs between reproduction and senescence.
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Affiliation(s)
- Rolando Rodríguez-Muñoz
- Centre for Ecology and Conservation, School of Biosciences, University of Exeter, Penryn Campus, TR10 9FE, United Kingdom
| | - Jelle J Boonekamp
- Centre for Ecology and Conservation, School of Biosciences, University of Exeter, Penryn Campus, TR10 9FE, United Kingdom
| | - Xing P Liu
- Centre for Ecology and Conservation, School of Biosciences, University of Exeter, Penryn Campus, TR10 9FE, United Kingdom.,College of Forestry, Jiangxi Agricultural University, Nanchang, 330045, Jiangxi, China
| | - Ian Skicko
- Centre for Ecology and Conservation, School of Biosciences, University of Exeter, Penryn Campus, TR10 9FE, United Kingdom
| | - David N Fisher
- Centre for Ecology and Conservation, School of Biosciences, University of Exeter, Penryn Campus, TR10 9FE, United Kingdom.,Department of Psychology, Neuroscience & Behaviour, McMaster University, 1280 Main St West, Hamilton, Ontario, L8S 4L8, Canada
| | - Paul Hopwood
- Centre for Ecology and Conservation, School of Biosciences, University of Exeter, Penryn Campus, TR10 9FE, United Kingdom
| | - Tom Tregenza
- Centre for Ecology and Conservation, School of Biosciences, University of Exeter, Penryn Campus, TR10 9FE, United Kingdom
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22
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Curtsinger JW. Fecundity for free? Enhanced oviposition in longevous populations of Drosophila melanogaster. Biogerontology 2019; 20:397-404. [PMID: 30603852 DOI: 10.1007/s10522-018-09791-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2018] [Accepted: 12/20/2018] [Indexed: 11/27/2022]
Abstract
Artificial selection for increased life span in experimental populations of Drosophila melanogaster sometimes produces long-lived populations that exhibit greater fecundity than unselected controls. The absence of a trade-off between survival and reproduction in these cases might be an artefact of the rich diet of typical lab culture; if nutritional resources are not limiting then there may be no need to trade off. Here I test the rich diet hypothesis by estimating genetic correlations between survival and age-specific fecundity in three nutritional environments. Experimental material consists of 58 recombinant inbred lines derived from an artificial selection experiment. Reducing the yeast content of medium causes substantial reductions in fecundity but does not alter patterns of genetic correlation. The correlation between life span and early fecundity is non-significant in all environments, while the life span correlations with mid-life fecundity are positive and statistically significant in all environments. The rich diet hypothesis is rejected. Qualitative features of fecundity trajectories are conserved across environments, with long-lived lines exhibiting a secondary peak of oviposition in mid-life. The micro-evolution of extended life span is not a monolithic process and does not necessarily involve direct trade-offs between survival and reproduction.
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Affiliation(s)
- James W Curtsinger
- Department of Ecology, Evolution, & Behavior, University of Minnesota Twin Cities, 1987 Upper Buford Circle, St. Paul, MN, 55108, USA.
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23
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Karpova EK, Rauschenbach IY, Gruntenko NE. Comparative analysis of the ftness of Drosophila virilis lines contrasting in response to stress. Vavilovskii Zhurnal Genet Selektsii 2019. [DOI: 10.18699/vj.1834-o] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
One of the crucial elements contributing to the adaptation of organisms to unfavorable environmental conditions is the reaction of stress. The study of its genetic control and role in adaptation to unfavorable conditions are of special interest. The juvenile hormone (JH) acts as a gonadotropic hormone in adult insects controlling the development of the ovaries, inducing vitellogenesis and oviposition. It was shown that a decrease in JH degradation in individuals reacting to adverse conditions by stress reaction (Rindividuals) causes delay in egg laying and seems to allow the population to “wait out” the unfavorable conditions, thereby contributing to the adaptation at the population level. However, monitoring natural populations of D. melanogaster for the capability of stress reaction demonstrated that they have a high percentage of individuals incapable of it (NRindividuals). The study of reproductive characteristics of R and NRindividuals showed that under normal conditions Rindividuals have the advantage of procreating offspring. Under unfavorable conditions, if the stressor is intense enough, NRindividuals die, but if its intensity is low, then they, unlike Rindividuals, continue to produce offspring. Based on these data, it was hypothesized that the balance of R and NRalleles in the population ensures its adaptation under frequent stresses of low intensity. To verify the hypothesis by an experiment, the ftness characteristics (lifespan, fecundity) of the R and NR lines of D. virilis were studied under normal conditions and under regular heat stress of various frequency.
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24
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Karpova EK, Rauschenbach IY, Gruntenko NE. Comparative analysis of the ftness of Drosophila virilis lines contrasting in response to stress. Vavilovskii Zhurnal Genet Selektsii 2019. [DOI: 10.18699/vj18.455] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
One of the crucial elements contributing to the adaptation of organisms to unfavorable environmental conditions is the reaction of stress. The study of its genetic control and role in adaptation to unfavorable conditions are of special interest. The juvenile hormone (JH) acts as a gonadotropic hormone in adult insects controlling the development of the ovaries, inducing vitellogenesis and oviposition. It was shown that a decrease in JH degradation in individuals reacting to adverse conditions by stress reaction (Rindividuals) causes delay in egg laying and seems to allow the population to “wait out” the unfavorable conditions, thereby contributing to the adaptation at the population level. However, monitoring natural populations of D. melanogaster for the capability of stress reaction demonstrated that they have a high percentage of individuals incapable of it (NRindividuals). The study of reproductive characteristics of R and NRindividuals showed that under normal conditions Rindividuals have the advantage of procreating offspring. Under unfavorable conditions, if the stressor is intense enough, NRindividuals die, but if its intensity is low, then they, unlike Rindividuals, continue to produce offspring. Based on these data, it was hypothesized that the balance of R and NRalleles in the population ensures its adaptation under frequent stresses of low intensity. To verify the hypothesis by an experiment, the ftness characteristics (lifespan, fecundity) of the R and NR lines of D. virilis were studied under normal conditions and under regular heat stress of various frequency.
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25
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Fabian DK, Garschall K, Klepsatel P, Santos‐Matos G, Sucena É, Kapun M, Lemaitre B, Schlötterer C, Arking R, Flatt T. Evolution of longevity improves immunity in Drosophila. Evol Lett 2018; 2:567-579. [PMID: 30564440 PMCID: PMC6292704 DOI: 10.1002/evl3.89] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Accepted: 10/24/2018] [Indexed: 12/20/2022] Open
Abstract
Much has been learned about the genetics of aging from studies in model organisms, but still little is known about naturally occurring alleles that contribute to variation in longevity. For example, analysis of mutants and transgenes has identified insulin signaling as a major regulator of longevity, yet whether standing variation in this pathway underlies microevolutionary changes in lifespan and correlated fitness traits remains largely unclear. Here, we have analyzed the genomes of a set of Drosophila melanogaster lines that have been maintained under direct selection for postponed reproduction and indirect selection for longevity, relative to unselected control lines, for over 35 years. We identified many candidate loci shaped by selection for longevity and late-life fertility, but - contrary to expectation - we did not find overrepresentation of canonical longevity genes. Instead, we found an enrichment of immunity genes, particularly in the Toll pathway, suggesting that evolutionary changes in immune function might underpin - in part - the evolution of late-life fertility and longevity. To test whether this genomic signature is causative, we performed functional experiments. In contrast to control flies, long-lived flies tended to downregulate the expression of antimicrobial peptides upon infection with age yet survived fungal, bacterial, and viral infections significantly better, consistent with alleviated immunosenescence. To examine whether genes of the Toll pathway directly affect longevity, we employed conditional knockdown using in vivo RNAi. In adults, RNAi against the Toll receptor extended lifespan, whereas silencing the pathway antagonist cactus--causing immune hyperactivation - dramatically shortened lifespan. Together, our results suggest that genetic changes in the age-dependent regulation of immune homeostasis might contribute to the evolution of longer life.
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Affiliation(s)
- Daniel K. Fabian
- Centre for Pathogen Evolution, Department of ZoologyUniversity of CambridgeCambridgeUnited Kingdom
- Institut für PopulationsgenetikVetmeduni ViennaViennaAustria
- Vienna Graduate School of Population GeneticsViennaAustria
| | - Kathrin Garschall
- Department of Ecology and EvolutionUniversity of LausanneLausanneSwitzerland
| | - Peter Klepsatel
- Institut für PopulationsgenetikVetmeduni ViennaViennaAustria
- Institute of ZoologySlovak Academy of Sciences845 06 BratislavaSlovakia
| | | | - Élio Sucena
- Instituto Gulbenkian de CiênciaOeirasPortugal
- Departamento de Biologia AnimalFaculdade de Ciências da Universidade de LisboaLisboaPortugal
| | - Martin Kapun
- Department of Ecology and EvolutionUniversity of LausanneLausanneSwitzerland
| | - Bruno Lemaitre
- Global Health InstituteSchool of Life Sciences, EPFLLausanneSwitzerland
| | | | - Robert Arking
- Department of Biological SciencesWayne State UniversityDetroitMichigan
| | - Thomas Flatt
- Institut für PopulationsgenetikVetmeduni ViennaViennaAustria
- Department of Ecology and EvolutionUniversity of LausanneLausanneSwitzerland
- Department of BiologyUniversity of FribourgFribourgSwitzerland
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26
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Abstract
Between the 1930s and 50s, evolutionary biologists developed a successful theory of why organisms age, firmly rooted in population genetic principles. By the 1980s the evolution of aging had a secure experimental basis. Since the force of selection declines with age, aging evolves due to mutation accumulation or a benefit to fitness early in life. Here we review major insights and challenges that have emerged over the last 35 years: selection does not always necessarily decline with age; higher extrinsic (i.e., environmentally caused) mortality does not always accelerate aging; conserved pathways control aging rate; senescence patterns are more diverse than previously thought; aging is not universal; trade-offs involving lifespan can be 'broken'; aging might be 'druggable'; and human life expectancy continues to rise but compressing late-life morbidity remains a pressing challenge.
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Affiliation(s)
- Thomas Flatt
- Department of Biology, University of Fribourg, Chemin du Musée 10, CH-1700, Fribourg, Switzerland
| | - Linda Partridge
- Max Planck Institute for Biology of Aging, Joseph-Stelzmann-Strasse 9b, D-50931, Cologne, Germany.
- Institute for Healthy Aging and GEE, University College London, Darwin Building, Gower Street, London, WC1E6BT, UK.
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27
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Gáliková M, Klepsatel P. Obesity and Aging in the Drosophila Model. Int J Mol Sci 2018; 19:ijms19071896. [PMID: 29954158 PMCID: PMC6073435 DOI: 10.3390/ijms19071896] [Citation(s) in RCA: 57] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2018] [Revised: 06/19/2018] [Accepted: 06/25/2018] [Indexed: 02/06/2023] Open
Abstract
Being overweight increases the risk of many metabolic disorders, but how it affects lifespan is not completely clear. Not all obese people become ill, and the exact mechanism that turns excessive fat storage into a health-threatening state remains unknown. Drosophila melanogaster has served as an excellent model for many diseases, including obesity, diabetes, and hyperglycemia-associated disorders, such as cardiomyopathy or nephropathy. Here, we review the connections between fat storage and aging in different types of fly obesity. Whereas obesity induced by high-fat or high-sugar diet is associated with hyperglycemia, cardiomyopathy, and in some cases, shortening of lifespan, there are also examples in which obesity correlates with longevity. Transgenic lines with downregulations of the insulin/insulin-like growth factor (IIS) and target of rapamycin (TOR) signaling pathways, flies reared under dietary restriction, and even certain longevity selection lines are obese, yet long-lived. The mechanisms that underlie the differential lifespans in distinct types of obesity remain to be elucidated, but fat turnover, inflammatory pathways, and dysregulations of glucose metabolism may play key roles. Altogether, Drosophila is an excellent model to study the physiology of adiposity in both health and disease.
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Affiliation(s)
- Martina Gáliková
- Department of Zoology, Stockholm University, Svante Arrhenius väg 18B, S-106 91 Stockholm, Sweden.
| | - Peter Klepsatel
- Institute of Zoology, Slovak Academy of Sciences, Dúbravská cesta 9, 845 06 Bratislava, Slovakia.
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28
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Golubev A, Panchenko A, Anisimov V. Applying parametric models to survival data: tradeoffs between statistical significance, biological plausibility, and common sense. Biogerontology 2018; 19:341-365. [PMID: 29869230 DOI: 10.1007/s10522-018-9759-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2018] [Accepted: 05/30/2018] [Indexed: 12/18/2022]
Abstract
Parametric models for survival data help to differentiate aging from other lifespan determinants. However, such inferences suffer from small sizes of experimental animal samples and variable animals handling by different labs. We analyzed control data from a single laboratory where interventions in murine lifespan were studied over decades. The minimal Gompertz model (GM) was found to perform best with most murine strains. However, when several control datasets related to a particular strain are fitted to GM, strikingly rigid interdependencies between GM parameters emerge, consistent with the Strehler-Mildvan correlation (SMC). SMC emerges even when survival patterns do not conform to GM, as with cancer-prone HER2/neu mice, which die at a log-normally distributed age. Numerical experiments show that SMC includes an artifact whose magnitude depends on dataset deviation from conformance to GM irrespectively of the noisiness of small datasets, another contributor to SMC. Still another contributor to SMC is the compensation effect of mortality (CEM): a real tradeoff between the physiological factors responsible for initial vitality and the rate of its decline. To avoid misinterpretations, we advise checking experimental results against a SMC based on historical controls or on subgroups obtained by randomization of control animals. An apparent acceleration of aging associated with a decrease in the initial mortality is invalid if it is not greater than SMC suggests. This approach applied to published data suggests that the effects of calorie restriction and of drugs believed to mimic it are different. SMC and CEM relevance to human survival patterns is discussed.
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Affiliation(s)
- Alexey Golubev
- N.N. Petrov Research Institute of Oncology, Pesochny-2, Saint-Petersburg, 197758, Russia.
| | - Andrei Panchenko
- N.N. Petrov Research Institute of Oncology, Pesochny-2, Saint-Petersburg, 197758, Russia
| | - Vladimir Anisimov
- N.N. Petrov Research Institute of Oncology, Pesochny-2, Saint-Petersburg, 197758, Russia
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29
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Physiological and Transcriptomic Analysis of a Chronologically Long-Lived Saccharomyces cerevisiae Strain Obtained by Evolutionary Engineering. Mol Biotechnol 2018; 60:468-484. [DOI: 10.1007/s12033-018-0087-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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30
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Duxbury EML, Rostant WG, Chapman T. Manipulation of feeding regime alters sexual dimorphism for lifespan and reduces sexual conflict in Drosophila melanogaster. Proc Biol Sci 2018; 284:rspb.2017.0391. [PMID: 28469030 PMCID: PMC5443951 DOI: 10.1098/rspb.2017.0391] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2017] [Accepted: 04/05/2017] [Indexed: 01/10/2023] Open
Abstract
Sexual dimorphism for lifespan (SDL) is widespread, but poorly understood. A leading hypothesis, which we test here, is that strong SDL can reduce sexual conflict by allowing each sex to maximize its sex-specific fitness. We used replicated experimental evolution lines of the fruit fly, Drosophila melanogaster, which had been maintained for over 360 generations on either unpredictable ‘Random’ or predictable ‘Regular’ feeding regimes. This evolutionary manipulation of feeding regime led to robust, enhanced SDL in Random over control, Regular lines. Enhanced SDL was associated with a significant increase in the fitness of focal males, tested with wild-type (WT) females. This was due to sex-specific changes to male life history, manifested as increased early reproductive output and reduced survival. In contrast, focal female fitness, tested with WT males, did not differ across regimes. Hence increased SDL was associated with a reduction in sexual conflict, which increased male fitness and maintained fitness in females. Differences in SDL were not associated with developmental time or developmental survival. Overall, the results showed that the expression of enhanced SDL, resulting from experimental evolution of feeding regimes, was associated with male-specific changes in life history, leading to increased fitness and reduced sexual conflict.
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Affiliation(s)
- Elizabeth M L Duxbury
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7HP, UK.,Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK
| | - Wayne G Rostant
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7HP, UK
| | - Tracey Chapman
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7HP, UK
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31
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Templeman NM, Murphy CT. Regulation of reproduction and longevity by nutrient-sensing pathways. J Cell Biol 2018; 217:93-106. [PMID: 29074705 PMCID: PMC5748989 DOI: 10.1083/jcb.201707168] [Citation(s) in RCA: 90] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Revised: 10/02/2017] [Accepted: 10/04/2017] [Indexed: 12/23/2022] Open
Abstract
Nutrients are necessary for life, as they are a crucial requirement for biological processes including reproduction, somatic growth, and tissue maintenance. Therefore, signaling systems involved in detecting and interpreting nutrient or energy levels-most notably, the insulin/insulin-like growth factor 1 (IGF-1) signaling pathway, mechanistic target of rapamycin (mTOR), and adenosine monophosphate-activated protein kinase (AMPK)-play important roles in regulating physiological decisions to reproduce, grow, and age. In this review, we discuss the connections between reproductive senescence and somatic aging and give an overview of the involvement of nutrient-sensing pathways in controlling both reproductive function and lifespan. Although the molecular mechanisms that affect these processes can be influenced by distinct tissue-, temporal-, and pathway-specific signaling events, the progression of reproductive aging and somatic aging is systemically coordinated by integrated nutrient-sensing signaling pathways regulating somatic tissue maintenance in conjunction with reproductive capacity.
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Affiliation(s)
- Nicole M Templeman
- Lewis-Sigler Institute for Integrative Genomics and Department of Molecular Biology, Princeton University, Princeton, NJ
| | - Coleen T Murphy
- Lewis-Sigler Institute for Integrative Genomics and Department of Molecular Biology, Princeton University, Princeton, NJ
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32
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Abstract
Although reproductive strategies can be influenced by a variety of intrinsic and extrinsic factors, life history theory provides a rigorous framework for explaining variation in reproductive effort. The terminal investment hypothesis proposes that a decreased expectation of future reproduction (as might arise from a mortality threat) should precipitate increased investment in current reproduction. Terminal investment has been widely studied, and a variety of intrinsic and extrinsic cues that elicit such a response have been identified across an array of taxa. Although terminal investment is often treated as a static strategy, the level at which a cue of decreased future reproduction is sufficient to trigger increased current reproductive effort (i.e., the terminal investment threshold) may depend on context, including the internal state of the organism or its current external environment, independent of the cue that triggers a shift in reproductive investment. Here, we review empirical studies that address the terminal investment hypothesis, exploring both the intrinsic and extrinsic factors that mediate its expression. Based on these studies, we propose a novel framework within which to view the strategy of terminal investment, incorporating factors that influence an individual's residual reproductive value beyond a terminal investment trigger - the dynamic terminal investment threshold.
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33
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Empirical verification of evolutionary theories of aging. Aging (Albany NY) 2017; 8:2568-2589. [PMID: 27783562 PMCID: PMC5115907 DOI: 10.18632/aging.101090] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2016] [Accepted: 10/11/2016] [Indexed: 01/09/2023]
Abstract
We recently selected 3 long-lived mutant strains of Saccharomyces cerevisiae by a lasting exposure to exogenous lithocholic acid. Each mutant strain can maintain the extended chronological lifespan after numerous passages in medium without lithocholic acid. In this study, we used these long-lived yeast mutants for empirical verification of evolutionary theories of aging. We provide evidence that the dominant polygenic trait extending longevity of each of these mutants 1) does not affect such key features of early-life fitness as the exponential growth rate, efficacy of post-exponential growth and fecundity; and 2) enhances such features of early-life fitness as susceptibility to chronic exogenous stresses, and the resistance to apoptotic and liponecrotic forms of programmed cell death. These findings validate evolutionary theories of programmed aging. We also demonstrate that under laboratory conditions that imitate the process of natural selection within an ecosystem, each of these long-lived mutant strains is forced out of the ecosystem by the parental wild-type strain exhibiting shorter lifespan. We therefore concluded that yeast cells have evolved some mechanisms for limiting their lifespan upon reaching a certain chronological age. These mechanisms drive the evolution of yeast longevity towards maintaining a finite yeast chronological lifespan within ecosystems.
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34
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Zwaan B, Bijlsma R, Hoekstra RF. ARTIFICIAL SELECTION FOR DEVELOPMENTAL TIME IN DROSOPHILA MELANOGASTER IN RELATION TO THE EVOLUTION OF AGING: DIRECT AND CORRELATED RESPONSES. Evolution 2017; 49:635-648. [PMID: 28565147 DOI: 10.1111/j.1558-5646.1995.tb02300.x] [Citation(s) in RCA: 88] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/1993] [Accepted: 08/12/1994] [Indexed: 11/27/2022]
Abstract
A wild-type strain of Drosophila melanogaster was successfully selected for both fast and slow larval development. The realized heritabilities (h2 ) ranged from 0.20 to 0.30 for the fast lines and 0.35 to 0.60 for the slow lines. The selection applied is relevant in relation to the evolution of aging. The longevity of adults, either virgin or mated, was not affected by selection for developmental time, indicating that developmental time is not a causal determinant of life span, thus confirming the results of the studies on environmental effects on aging (Zwaan et al. 1991, 1992). However, adult body weights were higher in the slow developmental lines and lower in the fast lines, relative to the control flies. Furthermore, slow females showed relatively high early fecundity and low late fecundity, as compared with control and fast females. Mated longevities and total lifetime progeny productions were not statistically different. Previous results obtained by other authors from selection experiments on age at reproduction either supported the mutation accumulation or the negative pleiotropy theory of aging (Luckinbill et al. 1984; Rose 1984b). The impact of the reported results on the interpretation of these studies is discussed, and it is noted that direct selection on adult longevity is needed to settle this issue.
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Affiliation(s)
- Bas Zwaan
- Department of Genetics, University of Groningen, Kerklaan 30, 9751 NN, Haren, The Netherlands
| | - R Bijlsma
- Department of Genetics, University of Groningen, Kerklaan 30, 9751 NN, Haren, The Netherlands
| | - R F Hoekstra
- Department of Genetics, Agricultural University, Dreyenlaan 2, 6703 HA Wageningen, The Netherlands
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35
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Tucrć N, Gliksman I, Šešlija D, Stojković O, Milanović D. LABORATORY EVOLUTION OF LIFE-HISTORY TRAITS IN THE BEAN WEEVIL (ACANTHOSCELIDES OBTECTUS): THE EFFECTS OF SELECTION ON DEVELOPMENTAL TIME IN POPULATIONS WITH DIFFERENT PREVIOUS HISTORY. Evolution 2017; 52:1713-1725. [PMID: 28565311 DOI: 10.1111/j.1558-5646.1998.tb02251.x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/1997] [Accepted: 06/25/1998] [Indexed: 11/27/2022]
Abstract
In this study we examined the direct and correlated responses for fast and slow preadult development time in three laboratory populations of the bean weevil (Acanthoscelides obtectus). The first population ("base," B) has experienced laboratory conditions for more than 10 years; the second ("young," Y) and the third ("old," O) populations were selected for early and late reproduction, respectively, before the onset of the present experiments. All three populations are successfully selected for both fast and slow preadult development. The realized heritabilities are very similar in all populations, suggesting a similar level of the additive genetic variance for preadult development. We studied the correlated responses on the following life-history traits: egg-to-adult viability, wet body weight, early fecundity, late fecundity, total realized female fecundity, and adult longevity. All life-history traits examined here, except for the egg-to-adult viability, are affected by selection for preadult development in at least in one of the studied populations. In all three populations, beetles selected for slow preadult development are heavier and live longer than those from the fast-selected lines. The findings with respect to adult longevity are unexpected, because the control Y and O populations, selected for short- and long-lived beetles, respectively, do not show significant differences in preadult development. Thus, our results indicate that some kind of asymmetrical correlated responses occur for preadult development and adult longevity each time that direct selection has been imposed on one or the other of these two traits. In contrast to studies with Drosophila, it appears that for insect species that are aphagous as adults, selection for preadult development entails selection for alleles that also change the adult longevity, but that age-specific selection (applied in the Y and O populations) mostly affects the alleles that have no significant influence on the preadult development. Implications of these findings on the developmental and evolutionary theories of aging are also discussed.
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Affiliation(s)
- N Tucrć
- Department of Evolutionary Biology, Institute for Biological Research, 29. Novembra 142, 11000, Belgrade, Serbia, Yugoslavia.,Institute of Zoology, Faculty of Science, University of Belgrade, Serbia, Yugoslavia
| | - I Gliksman
- Department of Evolutionary Biology, Institute for Biological Research, 29. Novembra 142, 11000, Belgrade, Serbia, Yugoslavia
| | - D Šešlija
- Department of Evolutionary Biology, Institute for Biological Research, 29. Novembra 142, 11000, Belgrade, Serbia, Yugoslavia
| | - O Stojković
- Department of Evolutionary Biology, Institute for Biological Research, 29. Novembra 142, 11000, Belgrade, Serbia, Yugoslavia
| | - D Milanović
- Department of Evolutionary Biology, Institute for Biological Research, 29. Novembra 142, 11000, Belgrade, Serbia, Yugoslavia
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36
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Dudycha JL, Tessier AJ. NATURAL GENETIC VARIATION OF LIFE SPAN, REPRODUCTION, AND JUVENILE GROWTH IN
DAPHNIA. Evolution 2017; 53:1744-1756. [DOI: 10.1111/j.1558-5646.1999.tb04559.x] [Citation(s) in RCA: 61] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/1998] [Accepted: 05/26/1999] [Indexed: 11/30/2022]
Affiliation(s)
- Jeffry L. Dudycha
- W. K. Kellogg Biological Station and Department of Zoology Michigan State University 3700 East Gull Lake Drive Hickory Corners Michigan 49060‐9516
| | - Alan J. Tessier
- W. K. Kellogg Biological Station and Department of Zoology Michigan State University 3700 East Gull Lake Drive Hickory Corners Michigan 49060‐9516
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37
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Stearns SC, Kaiser M. EFFECTS ON FITNESS COMPONENTS OF P-ELEMENT INSERTS IN DROSOPHILA MELANOGASTER: ANALYSIS OF TRADE-OFFS. Evolution 2017; 50:795-806. [PMID: 28568924 DOI: 10.1111/j.1558-5646.1996.tb03889.x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/1994] [Accepted: 05/16/1995] [Indexed: 11/29/2022]
Abstract
We analyzed the trade-offs between fitness components detected in four experiments in which traits were manipulated by inserting small (control) and large (treatment) P-elements into the Drosophila melanogaster genome. Treatment effects and the interactions of treatment with temperature, experiment, and line were caused by the greater length and different positions of the treatment insert. In inbred flies, the treatment decreased early and total fecundity. Whether it increased the lifespan of mated females depended upon adult density. Analysis of line-by-treatment-by-temperature interactions revealed hidden trade-offs that would have been missed by other methods. They included a significant trade-off between lifespan and early fecundity. At 25°C high early fecundity was associated with decreased reproductive rates and increased mortality rates 10-15 days later and persisting throughout life, but not at 29.5°C. Correlations with Gompertz coefficients suggested that flies that were heavier at eclosion also aged more slowly and that flies that aged more slowly had higher fecundity late in life at 25°C. The results support the view that lifespan trades off with fecundity and that late fecundity trades off with rate of aging in fruitflies. Genetic engineering is an independent method for the analysis of trade-offs that complements selection experiments.
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Affiliation(s)
| | - Marcel Kaiser
- Zoology Institute, Rheinsprung 9, CH-4051, Basel, Switzerland
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38
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Chippindale AK, Alipaz JA, Chen HW, Rose MR. EXPERIMENTAL EVOLUTION OF ACCELERATED DEVELOPMENT IN DROSOPHILA.
1. DEVELOPMENTAL SPEED AND LARVAL SURVIVAL. Evolution 2017; 51:1536-1551. [DOI: 10.1111/j.1558-5646.1997.tb01477.x] [Citation(s) in RCA: 89] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/1996] [Accepted: 05/07/1997] [Indexed: 11/27/2022]
Affiliation(s)
- Adam K. Chippindale
- Department of Ecology and Evolutionary Biology; University of California; Irvine California 92717-2525
| | - Julie A. Alipaz
- Department of Ecology and Evolutionary Biology; University of California; Irvine California 92717-2525
| | - Hsiao-Wei Chen
- Department of Ecology and Evolutionary Biology; University of California; Irvine California 92717-2525
| | - Michael R. Rose
- Department of Ecology and Evolutionary Biology; University of California; Irvine California 92717-2525
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39
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Werfel J, Ingber DE, Bar-Yam Y. Theory and associated phenomenology for intrinsic mortality arising from natural selection. PLoS One 2017; 12:e0173677. [PMID: 28355288 PMCID: PMC5371302 DOI: 10.1371/journal.pone.0173677] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2015] [Accepted: 02/25/2017] [Indexed: 11/30/2022] Open
Abstract
Standard evolutionary theories of aging and mortality, implicitly based on assumptions of spatial averaging, hold that natural selection cannot favor shorter lifespan without direct compensating benefit to individual reproductive success. However, a number of empirical observations appear as exceptions to or are difficult to reconcile with this view, suggesting explicit lifespan control or programmed death mechanisms inconsistent with the classic understanding. Moreover, evolutionary models that take into account the spatial distributions of populations have been shown to exhibit a variety of self-limiting behaviors, maintained through environmental feedback. Here we extend recent work on spatial modeling of lifespan evolution, showing that both theory and phenomenology are consistent with programmed death. Spatial models show that self-limited lifespan robustly results in long-term benefit to a lineage; longer-lived variants may have a reproductive advantage for many generations, but shorter lifespan ultimately confers long-term reproductive advantage through environmental feedback acting on much longer time scales. Numerous model variations produce the same qualitative result, demonstrating insensitivity to detailed assumptions; the key conditions under which self-limited lifespan is favored are spatial extent and locally exhaustible resources. Factors including lower resource availability, higher consumption, and lower dispersal range are associated with evolution of shorter lifespan. A variety of empirical observations can parsimoniously be explained in terms of long-term selective advantage for intrinsic mortality. Classically anomalous empirical data on natural lifespans and intrinsic mortality, including observations of longer lifespan associated with increased predation, and evidence of programmed death in both unicellular and multicellular organisms, are consistent with specific model predictions. The generic nature of the spatial model conditions under which intrinsic mortality is favored suggests a firm theoretical basis for the idea that evolution can quite generally select for shorter lifespan directly.
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Affiliation(s)
- Justin Werfel
- Wyss Institute for Biologically Inspired Engineering, Harvard University, Cambridge, Massachusetts, United States of America
- New England Complex Systems Institute, Cambridge, Massachusetts, United States of America
- Harvard Medical School and Children’s Hospital, Boston, Massachusetts, United States of America
| | - Donald E. Ingber
- Wyss Institute for Biologically Inspired Engineering, Harvard University, Cambridge, Massachusetts, United States of America
- Harvard Medical School and Children’s Hospital, Boston, Massachusetts, United States of America
- School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts, United States of America
| | - Yaneer Bar-Yam
- New England Complex Systems Institute, Cambridge, Massachusetts, United States of America
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40
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Panagakis A, Hamel S, Côté SD. Influence of Early Reproductive Success on Longevity and Late Reproductive Success in an Alpine Ungulate. Am Nat 2017; 189:667-683. [PMID: 28514626 DOI: 10.1086/691388] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
The life-history theories of aging predict lifetime trade-offs between early reproductive allocation and late-life survival, reproduction, or both components of fitness. Recent studies in wild populations have found evidence for these early-late life trade-offs, but rarely have they been found across multiple traits while exploring the additional effects of variation in environmental conditions and individual quality. Benefiting from longitudinal data on adult female mountain goats (Oreamnos americanus), we investigated the influence of age at first reproduction (AFR) and early reproductive success (ERS) on longevity, late reproductive success, and senescence rates while accounting for the influence of natal environmental conditions and individual quality. Contrary to predictions, we did not find evidence for early-late life trade-offs. Instead, an earlier AFR and a greater ERS had positive but weak direct effects on late reproductive success. Natal population density, however, was the strongest determinant of all life-history traits, having a direct negative effect on female longevity, late reproductive success, AFR, and ERS. Although natal density reduced the probability of annual reproduction and annual survival during adulthood, higher allocation to reproduction in early life and poorer natal conditions did not lead to accelerated rates of senescence during adulthood. The results of this investigation provide an integrated picture of early-late life trade-offs, underscoring the importance of accounting for environmental conditions because of their potentially strong implications for population dynamics.
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41
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Hughes KA, Leips J. Pleiotropy, constraint, and modularity in the evolution of life histories: insights from genomic analyses. Ann N Y Acad Sci 2017; 1389:76-91. [PMID: 27936291 PMCID: PMC5318229 DOI: 10.1111/nyas.13256] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Revised: 08/10/2016] [Accepted: 08/22/2016] [Indexed: 12/20/2022]
Abstract
Multicellular organisms display an enormous range of life history (LH) strategies and present an evolutionary conundrum; despite strong natural selection, LH traits are characterized by high levels of genetic variation. To understand the evolution of life histories and maintenance of this variation, the specific phenotypic effects of segregating alleles and the genetic networks in which they act need to be elucidated. In particular, the extent to which LH evolution is constrained by the pleiotropy of alleles contributing to LH variation is generally unknown. Here, we review recent empirical results that shed light on this question, with an emphasis on studies employing genomic analyses. While genome-scale analyses are increasingly practical and affordable, they face limitations of genetic resolution and statistical power. We describe new research approaches that we believe can produce new insights and evaluate their promise and applicability to different kinds of organisms. Two approaches seem particularly promising: experiments that manipulate selection in multiple dimensions and measure phenotypic and genomic response and analytical approaches that take into account genome-wide associations between markers and phenotypes, rather than applying a traditional marker-by-marker approach.
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Affiliation(s)
- Kimberly A. Hughes
- Department of Biological Science, Florida State University, Tallahassee, Florida
| | - Jeff Leips
- Department of Biological Sciences, University of Maryland, Baltimore County, Baltimore, Maryland
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42
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Gomez-Perez A, Kyryakov P, Burstein MT, Asbah N, Noohi F, Iouk T, Titorenko VI. Empirical Validation of a Hypothesis of the Hormetic Selective Forces Driving the Evolution of Longevity Regulation Mechanisms. Front Genet 2016; 7:216. [PMID: 27999589 PMCID: PMC5138192 DOI: 10.3389/fgene.2016.00216] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2016] [Accepted: 11/24/2016] [Indexed: 12/27/2022] Open
Abstract
Exogenously added lithocholic bile acid and some other bile acids slow down yeast chronological aging by eliciting a hormetic stress response and altering mitochondrial functionality. Unlike animals, yeast cells do not synthesize bile acids. We therefore hypothesized that bile acids released into an ecosystem by animals may act as interspecies chemical signals that generate selective pressure for the evolution of longevity regulation mechanisms in yeast within this ecosystem. To empirically verify our hypothesis, in this study we carried out a three-step process for the selection of long-lived yeast species by a long-term exposure to exogenous lithocholic bile acid. Such experimental evolution yielded 20 long-lived mutants, three of which were capable of sustaining their considerably prolonged chronological lifespans after numerous passages in medium without lithocholic acid. The extended longevity of each of the three long-lived yeast species was a dominant polygenic trait caused by mutations in more than two nuclear genes. Each of the three mutants displayed considerable alterations to the age-related chronology of mitochondrial respiration and showed enhanced resistance to chronic oxidative, thermal, and osmotic stresses. Our findings empirically validate the hypothesis suggesting that hormetic selective forces can drive the evolution of longevity regulation mechanisms within an ecosystem.
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Affiliation(s)
| | - Pavlo Kyryakov
- Department of Biology, Concordia University Montreal, QC, Canada
| | | | - Nimara Asbah
- Department of Biology, Concordia University Montreal, QC, Canada
| | - Forough Noohi
- Department of Biology, Concordia University Montreal, QC, Canada
| | - Tania Iouk
- Department of Biology, Concordia University Montreal, QC, Canada
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44
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Karpova EK, Rauschenbach IY, Gruntenko NE. Comparative analysis of the fitness of Drosophila virilis lines contrasting in response to stress. Vavilovskii Zhurnal Genet Selektsii 2015. [DOI: 10.18699/vj18.34-o] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
One of the crucial elements contributing to the adaptation of organisms to unfavorable environmental conditions is the reaction of stress. The study of its genetic control and role in adaptation to unfavorable conditions are of special interest. The juvenile hormone (JH) acts as a gonadotropic hormone in adult insects controlling the development of the ovaries, inducing vitellogenesis and oviposition. It was shown that a decrease in JH degradation in individuals reacting to adverse conditions by stress reaction (R-individuals) causes delay in egg laying and seems to allow the population to “wait out” the unfavorable conditions, thereby contributing to the adaptation at the population level. However, monitoring natural populations of D. melanogaster for the capability of stress reaction demonstrated that they have a high percentage of individuals incapable of it (NR-individuals). The study of reproductive characteristics of R- and NR-individuals showed that under normal conditions R-individuals have the advantage of procreating offspring. Under unfavorable conditions, if the stressor is intense enough, NR-individuals die, but if its intensity is low, then they, unlike R-individuals, continue to produce offspring. Based on these data, it was hypothesized that the balance of R- and NR-alleles in the population ensures its adaptation under frequent stresses of low intensity. To verify the hypothesis by an experiment, the fitness characteristics (lifespan, fecundity) of the R and NR lines of D. virilis were studied under normal conditions and under regular heat stress of various frequency.
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45
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May CM, Doroszuk A, Zwaan BJ. The effect of developmental nutrition on life span and fecundity depends on the adult reproductive environment in Drosophila melanogaster. Ecol Evol 2015; 5:1156-68. [PMID: 25859322 PMCID: PMC4377260 DOI: 10.1002/ece3.1389] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2014] [Revised: 12/10/2014] [Accepted: 12/12/2014] [Indexed: 11/10/2022] Open
Abstract
Both developmental nutrition and adult nutrition affect life-history traits; however, little is known about whether the effect of developmental nutrition depends on the adult environment experienced. We used the fruit fly to determine whether life-history traits, particularly life span and fecundity, are affected by developmental nutrition, and whether this depends on the extent to which the adult environment allows females to realize their full reproductive potential. We raised flies on three different developmental food levels containing increasing amounts of yeast and sugar: poor, control, and rich. We found that development on poor or rich larval food resulted in several life-history phenotypes indicative of suboptimal conditions, including increased developmental time, and, for poor food, decreased adult weight. However, development on poor larval food actually increased adult virgin life span. In addition, we manipulated the reproductive potential of the adult environment by adding yeast or yeast and a male. This manipulation interacted with larval food to determine adult fecundity. Specifically, under two adult conditions, flies raised on poor larval food had higher reproduction at certain ages - when singly mated this occurred early in life and when continuously mated with yeast this occurred during midlife. We show that poor larval food is not necessarily detrimental to key adult life-history traits, but does exert an adult environment-dependent effect, especially by affecting virgin life span and altering adult patterns of reproductive investment. Our findings are relevant because (1) they may explain differences between published studies on nutritional effects on life-history traits; (2) they indicate that optimal nutritional conditions are likely to be different for larvae and adults, potentially reflecting evolutionary history; and (3) they urge for the incorporation of developmental nutritional conditions into the central life-history concept of resource acquisition and allocation.
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Affiliation(s)
- Christina M May
- Laboratory of Genetics, Plant Sciences, Wageningen University Wageningen, 6708 PB, the Netherlands
| | - Agnieszka Doroszuk
- Laboratory of Genetics, Plant Sciences, Wageningen University Wageningen, 6708 PB, the Netherlands
| | - Bas J Zwaan
- Laboratory of Genetics, Plant Sciences, Wageningen University Wageningen, 6708 PB, the Netherlands
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46
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Aggarwal DD. Physiological basis of starvation resistance in Drosophila leontia: analysis of sexual dimorphism. ACTA ACUST UNITED AC 2015; 217:1849-59. [PMID: 24871919 DOI: 10.1242/jeb.096792] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Geographically varying starvation stress has often been considered as a natural selector that constrains between-population differences for starvation resistance (SR) in Drosophila species. On the Indian subcontinent, a dozen Drosophila species have shown clinal variations in SR across latitude, but the evolved physiological basis of such contrasting adaptations is largely unknown. In the present study, I untangled the physiological basis of sex-specific as well as between-population divergence for SR in D. leontia, collected across a latitudinal transect of the Indian subcontinent (11°45'-31°19'N). Secondly, I tested the assumptions that hardening to starvation stress facilitates an increased survival under subsequent lethal levels of starvation, and such plastic effects differ between the sexes. I observed several interesting results. In contrast to a steeper cline of starvation-related traits with latitude in females, a shallower gradient was observed for males. Females stored higher (~1.3-fold) dry-mass-specific levels of body lipids and glycogen contents, and utilized these both of these energy resources under starvation stress, whereas the starved males metabolized only body lipids as a source of energy. Conversely, the rate of body lipid utilization and threshold need were considerably higher in females as compared with males. Between-population differences were significant for storage levels of energy reserves only, but not for other avenues (rate of metabolite utilization and threshold need) of SR for both sexes. These findings indicate that multiple pathways shape the physiological basis of sexual dimorphism for SR in D. leontia. Further, single or multiple bouts of starvation hardening conferred an increased longevity (~4-9 h; P<0.001) under subsequent lethal levels of starvation stress for females only, and such plastic responses were consistent with a decrease in rate of metabolite utilization. Nevertheless, between-population effects were non-significant for absolute hardening capacity (AHC=KSR-C). Altogether, these findings suggest that similar evolutionary constraints have resulted in divergent genetic as well as plastic responses to evolve adaptations under starvation stress, and account for the observed sexual dimorphism for basal SR in D. leontia.
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Affiliation(s)
- Dau Dayal Aggarwal
- Institute of Evolution, University of Haifa, 31905 Haifa, Israel Department of Genetics, Maharshi Dayanand University, Rohtak 124001, India
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Lind MI, Berg EC, Alavioon G, Maklakov AA. Evolution of differential maternal age effects on male and female offspring development and longevity. Funct Ecol 2014. [DOI: 10.1111/1365-2435.12308] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Martin I. Lind
- Ageing Research Group Department of Animal Ecology Evolutionary Biology Centre Uppsala University Uppsala 75236 Sweden
| | - Elena C. Berg
- Ageing Research Group Department of Animal Ecology Evolutionary Biology Centre Uppsala University Uppsala 75236 Sweden
- Department of Computer Science, Math & Science American University of Paris 31 Avenue Bosquet Paris 75007 France
| | - Ghazal Alavioon
- Ageing Research Group Department of Animal Ecology Evolutionary Biology Centre Uppsala University Uppsala 75236 Sweden
| | - Alexei A. Maklakov
- Ageing Research Group Department of Animal Ecology Evolutionary Biology Centre Uppsala University Uppsala 75236 Sweden
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48
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Kimber CM, Chippindale AK. Mutation, condition, and the maintenance of extended lifespan in Drosophila. Curr Biol 2013; 23:2283-2287. [PMID: 24210612 DOI: 10.1016/j.cub.2013.09.049] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2013] [Revised: 09/18/2013] [Accepted: 09/23/2013] [Indexed: 10/26/2022]
Abstract
The evolutionary theory of aging predicts that longevity will decline via drift or age-specific tradeoffs when selection favors early life fitness. Many Drosophila melanogaster populations continually terminated at young adult ages retain surprisingly long postselection lifespans. We compiled three decades of longevity data from the Ives population, demonstrating that postselective longevity was both substantial (30 days) and temporally stable over this period. Recently, alleles with positive pleiotropic effects between adjacent ages, particularly those affecting overall condition, have been integrated into the theory and may explain the extended longevity observed. We experimentally tested this hypothesis by isolating 20 hemiclones from Ives and allowing spontaneous mutations to accumulate (MA) for 35 generations. Fitness and longevity were positively genetically correlated in control females, and both traits declined due to MA. Crucially, MA induced a strong positive genetic correlation between the traits in both sexes, implying that mutations with early-life impacts also reduce late-life survival. Our results suggest that extended postreproductive longevity is actively maintained by selection for early-life fitness via positive pleiotropy and is not a merely a byproduct of exhaustion of genetic variation or weak drift. Thus mutation-selection balance for early fitness may govern variance in longevity in this system: a balance struck remarkably long after selection for continued survival ceases.
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49
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Klepsatel P, Gáliková M, De Maio N, Ricci S, Schlötterer C, Flatt T. Reproductive and post-reproductive life history of wild-caught Drosophila melanogaster
under laboratory conditions. J Evol Biol 2013; 26:1508-20. [DOI: 10.1111/jeb.12155] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2012] [Accepted: 03/08/2013] [Indexed: 11/28/2022]
Affiliation(s)
- P. Klepsatel
- Institut für Populationsgenetik; Vetmeduni Vienna; Vienna Austria
| | - M. Gáliková
- Institut für Populationsgenetik; Vetmeduni Vienna; Vienna Austria
| | - N. De Maio
- Institut für Populationsgenetik; Vetmeduni Vienna; Vienna Austria
| | - S. Ricci
- Dipartimento di Matematica; Università di Pisa; Pisa Italy
| | - C. Schlötterer
- Institut für Populationsgenetik; Vetmeduni Vienna; Vienna Austria
| | - T. Flatt
- Institut für Populationsgenetik; Vetmeduni Vienna; Vienna Austria
- Wissenschaftskolleg zu Berlin; Berlin Germany
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50
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Wit J, Frydenberg J, Sarup P, Loeschcke V. Confirming candidate genes for longevity by RT-qPCR using two different genetic backgrounds and selection methods. JOURNAL OF INSECT PHYSIOLOGY 2013; 59:255-262. [PMID: 23357090 DOI: 10.1016/j.jinsphys.2013.01.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2012] [Revised: 01/14/2013] [Accepted: 01/15/2013] [Indexed: 06/01/2023]
Abstract
Elucidating genes that affect life span or that can be used as biomarkers for ageing has received attention in diverse studies in recent years. Using model organisms and various approaches several genes have been linked to the longevity phenotype. For Drosophila melanogaster those studies have usually focussed on one sex and on flies originating from one genetic background, and results from different studies often do not overlap. Using D. melanogaster selected for increased longevity we aimed to find robust longevity related genes by examining gene expression in both sexes of flies originating from different genetic backgrounds. Further, we compared expression changes across three ages, when flies were young, middle aged or old, to examine how candidate gene expression changes with the onset of ageing. We selected 10 genes based on their expression differences in prior microarray studies. For about 50% of these we confirmed their potential as a candidate longevity gene. We found one robust candidate gene for longevity, CG32638. Three other genes, CG8934, mRpS10 and Spn43Ad, showed a tendency to be involved in life span determination in both backgrounds tested.
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Affiliation(s)
- Janneke Wit
- Department of Bioscience, Integrative Ecology and Evolution, Aarhus University, NyMunkegade 114-116, DK-8000 Aarhus C, Denmark.
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