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Feiz L, Shyu C, Wu S, Ahern KR, Gull I, Rong Y, Artymowicz CJ, Piñeros MA, Fei Z, Brutnell TP, Jander G. COI1 F-box proteins regulate DELLA protein levels, growth, and photosynthetic efficiency in maize. THE PLANT CELL 2024; 36:3237-3259. [PMID: 38801745 PMCID: PMC11371192 DOI: 10.1093/plcell/koae161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 04/18/2024] [Accepted: 04/23/2024] [Indexed: 05/29/2024]
Abstract
The F-box protein Coronatine Insensitive (COI) is a receptor for the jasmonic acid signaling pathway in plants. To investigate the functions of the 6 maize (Zea mays) COI proteins (COI1a, COI1b, COI1c, COI1d, COI2a, and COI2b), we generated single, double, and quadruple loss-of-function mutants. The pollen of the coi2a coi2b double mutant was inviable. The coi1 quadruple mutant (coi1-4x) exhibited shorter internodes, decreased photosynthesis, leaf discoloration, microelement deficiencies, and accumulation of DWARF8 and/or DWARF9, 2 DELLA family proteins that repress the gibberellic acid (GA) signaling pathway. Coexpression of COI and DELLA in Nicotiana benthamiana showed that the COI proteins trigger proteasome-dependent DELLA degradation. Many genes that are downregulated in the coi1-4x mutant are GA-inducible. In addition, most of the proteins encoded by the downregulated genes are predicted to be bundle sheath- or mesophyll-enriched, including those encoding C4-specific photosynthetic enzymes. Heterologous expression of maize Coi genes in N. benthamiana showed that COI2a is nucleus-localized and interacts with maize jasmonate zinc-finger inflorescence meristem domain (JAZ) proteins, the canonical COI repressor partners. However, maize COI1a and COI1c showed only partial nuclear localization and reduced binding efficiency to the tested JAZ proteins. Together, these results show the divergent functions of the 6 COI proteins in regulating maize growth and defense pathways.
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Affiliation(s)
- Leila Feiz
- Boyce Thompson Institute, Ithaca, NY 14853, USA
| | - Christine Shyu
- Crop Genome Editing, Regulatory Science, Bayer Crop Science, Chesterfield, MO 63017, USA
| | - Shan Wu
- Boyce Thompson Institute, Ithaca, NY 14853, USA
| | - Kevin R Ahern
- Boyce Thompson Institute, Ithaca, NY 14853, USA
- Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA
| | - Iram Gull
- Boyce Thompson Institute, Ithaca, NY 14853, USA
| | - Ying Rong
- KWS Gateway Research Center, St. Louis, MO 63132, USA
| | | | - Miguel A Piñeros
- Robert W. Holley Center for Agriculture and Health, USDA-ARS, Ithaca, NY 14853, USA
| | - Zhangjun Fei
- Boyce Thompson Institute, Ithaca, NY 14853, USA
- Robert W. Holley Center for Agriculture and Health, USDA-ARS, Ithaca, NY 14853, USA
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Rakhmankulova Z, Shuyskaya E, Prokofieva M, Toderich K, Saidova L, Lunkova N, Voronin P. Drought Has a Greater Negative Effect on the Growth of the C 3Chenopodium quinoa Crop Halophyte than Elevated CO 2 and/or High Temperature. PLANTS (BASEL, SWITZERLAND) 2024; 13:1666. [PMID: 38931098 PMCID: PMC11207731 DOI: 10.3390/plants13121666] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2024] [Revised: 06/08/2024] [Accepted: 06/14/2024] [Indexed: 06/28/2024]
Abstract
Plant growth and productivity are predicted to be affected by rising CO2 concentrations, drought and temperature stress. The C3 crop model in a changing climate is Chenopodium quinoa Willd-a protein-rich pseudohalphyte (Amaranthaceae). Morphophysiological, biochemical and molecular genetic studies were performed on quinoa grown at ambient (400 ppm, aCO2) and elevated (800 ppm, eCO2) CO2 concentrations, drought (D) and/or high temperature (eT) treatments. Among the single factors, drought caused the greatest stress response, inducing disturbances in the light and dark photosynthesis reactions (PSII, apparent photosynthesis) and increasing oxidative stress (MDA). Futhermore, compensation mechanisms played an important protective role against eT or eCO2. The disruption of the PSII function was accompanied by the activation of the expression of PGR5, a gene of PSI cyclic electron transport (CET). Wherein under these conditions, the constant Rubisco content was maintained due to an increase in its biosynthesis, which was confirmed by the activation of rbcL gene expression. In addition, the combined stress treatments D+eT and eCO2+D+eT caused the greatest negative effect, as measured by increased oxidative stress, decreased water use efficiency, and the functioning of protective mechanisms, such as photorespiration and the activity of antioxidant enzymes. Furthermore, decreased PSII efficiency and increased non-photochemical quenching (NPQ) were not accompanied by the activation of protective mechanisms involving PSI CET. In summary, results show that the greatest stress experienced by C. quinoa plants was caused by drought and the combined stresses D+eT and eCO2+D+eT. Thus, drought consistently played a decisive role, leading to increased oxidative stress and a decrease in defense mechanism effectiveness.
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Affiliation(s)
- Zulfira Rakhmankulova
- K.A. Timiryazev Institute of Plant Physiology of Russian Academy of Science, 127276 Moscow, Russia; (Z.R.); (E.S.); (M.P.); (L.S.); (N.L.)
| | - Elena Shuyskaya
- K.A. Timiryazev Institute of Plant Physiology of Russian Academy of Science, 127276 Moscow, Russia; (Z.R.); (E.S.); (M.P.); (L.S.); (N.L.)
| | - Maria Prokofieva
- K.A. Timiryazev Institute of Plant Physiology of Russian Academy of Science, 127276 Moscow, Russia; (Z.R.); (E.S.); (M.P.); (L.S.); (N.L.)
| | - Kristina Toderich
- Graduate School of Bioresources, Mie University, 1577 Kurimamachiya, Tsu 514-8507, Japan
| | - Luizat Saidova
- K.A. Timiryazev Institute of Plant Physiology of Russian Academy of Science, 127276 Moscow, Russia; (Z.R.); (E.S.); (M.P.); (L.S.); (N.L.)
| | - Nina Lunkova
- K.A. Timiryazev Institute of Plant Physiology of Russian Academy of Science, 127276 Moscow, Russia; (Z.R.); (E.S.); (M.P.); (L.S.); (N.L.)
| | - Pavel Voronin
- K.A. Timiryazev Institute of Plant Physiology of Russian Academy of Science, 127276 Moscow, Russia; (Z.R.); (E.S.); (M.P.); (L.S.); (N.L.)
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Shuyskaya E, Rakhmankulova Z, Prokofieva M, Lunkova N, Voronin P. Salinity Mitigates the Negative Effect of Elevated Temperatures on Photosynthesis in the C 3-C 4 Intermediate Species Sedobassia sedoides. PLANTS (BASEL, SWITZERLAND) 2024; 13:800. [PMID: 38592796 PMCID: PMC10976079 DOI: 10.3390/plants13060800] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Revised: 03/06/2024] [Accepted: 03/10/2024] [Indexed: 04/11/2024]
Abstract
The adaptation of plants to combined stresses requires unique responses capable of overcoming both the negative effects of each individual stress and their combination. Here, we studied the C3-C4 (C2) halophyte Sedobassia sedoides in response to elevated temperature (35 °C) and salinity (300 mM NaCl) as well as their combined effect. The responses we studied included changes in water-salt balance, light and dark photosynthetic reactions, the expression of photosynthetic genes, the activity of malate dehydrogenase complex enzymes, and the antioxidant system. Salt treatment led to altered water-salt balance, improved water use efficiency, and an increase in the abundance of key enzymes involved in intermediate C3-C4 photosynthesis (i.e., Rubisco and glycine decarboxylase). We also observed a possible increase in the activity of the C2 carbon-concentrating mechanism (CCM), which allowed plants to maintain high photosynthesis intensity and biomass accumulation. Elevated temperatures caused an imbalance in the dark and light reactions of photosynthesis, leading to stromal overreduction and the excessive generation of reactive oxygen species (ROS). In response, S. sedoides significantly activated a metabolic pathway for removing excess NADPH, the malate valve, which is catalyzed by NADP-MDH, without observable activation of the antioxidant system. The combined action of these two factors caused the activation of antioxidant defenses (i.e., increased activity of SOD and POX and upregulation of FDI), which led to a decrease in oxidative stress and helped restore the photosynthetic energy balance. Overall, improved PSII functioning and increased activity of PSI cyclic electron transport (CET) and C2 CCM led to an increase in the photosynthesis intensity of S. sedoides under the combined effect of salinity and elevated temperature relative to high temperature alone.
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Affiliation(s)
- Elena Shuyskaya
- K.A. Timiryazev Institute of Plant Physiology of Russian Academy of Science, 127276 Moscow, Russia; (Z.R.); (M.P.); (N.L.); (P.V.)
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4
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Degen GE, Pastorelli F, Johnson MP. Proton Gradient Regulation 5 is required to avoid photosynthetic oscillations during light transitions. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:947-961. [PMID: 37891008 DOI: 10.1093/jxb/erad428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Accepted: 10/27/2023] [Indexed: 10/29/2023]
Abstract
The production of ATP and NADPH by the light reactions of photosynthesis and their consumption by the Calvin-Benson-Bassham (CBB) cycle and other downstream metabolic reactions requires careful regulation. Environmental shifts perturb this balance, leading to photo-oxidative stress and losses in CO2 assimilation. Imbalances in the production and consumption of ATP and NADPH manifest themselves as transient instability in the chlorophyll fluorescence, P700, electrochromic shift, and CO2 uptake signals recorded on leaves. These oscillations can be induced in wild-type plants by sudden shifts in CO2 concentration or light intensity; however, mutants exhibiting increased oscillatory behaviour have yet to be reported. This has precluded an understanding of the regulatory mechanisms employed by plants to suppress oscillations. Here we show that the Arabidopsis pgr5 mutant, which is deficient in Proton Gradient Regulation 5 (PGR5)-dependent cyclic electron transfer (CET), exhibits increased oscillatory behaviour. In contrast, mutants lacking the NADH-dehydrogenase-like-dependent CET are largely unaffected. The absence of oscillations in the hope2 mutant which, like pgr5, lacks photosynthetic control and exhibits high ATP synthase conductivity, ruled out loss of these photoprotective mechanisms as causes. Instead, we observed slower formation of the proton motive force and, by inference, ATP synthesis in pgr5 following environmental perturbation, leading to the transient reduction of the electron transfer chain and photosynthetic oscillations. PGR5-dependent CET therefore plays a major role in damping the effect of environmental perturbations on photosynthesis to avoid losses in CO2 fixation.
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Affiliation(s)
- Gustaf E Degen
- Plants, Photosynthesis & Soil, School of Biosciences, University of Sheffield, Sheffield, UK
| | - Federica Pastorelli
- Plants, Photosynthesis & Soil, School of Biosciences, University of Sheffield, Sheffield, UK
| | - Matthew P Johnson
- Plants, Photosynthesis & Soil, School of Biosciences, University of Sheffield, Sheffield, UK
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5
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He Y, Lu C, Jiang Z, Sun Y, Liu H, Yin Z. NADH dehydrogenase-like complex L subunit improves salt tolerance by enhancing photosynthetic electron transport. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 207:108420. [PMID: 38324953 DOI: 10.1016/j.plaphy.2024.108420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 01/17/2024] [Accepted: 02/02/2024] [Indexed: 02/09/2024]
Abstract
Cyclic electron transport (CET) around photosystem I (PSI) mediated by the NADH dehydrogenase-like (NDH) complex is closely related to plant salt tolerance. However, whether overexpression of a core subunit of the NDH complex affects the photosynthetic electron transport under salt stress is currently unclear. Here, we expressed the NDH complex L subunit (Ndhl) genes ZmNdhl1 and ZmNdhl2 from C4 plant maize (Zea mays) or OsNdhl from C3 plant rice (Oryza sativa) using a constitutive promoter in rice. Transgenic rice lines expressing ZmNdhl1, ZmNdhl2, or OsNdhl displayed enhanced salt tolerance, as indicated by greater plant height, dry weight, and leaf relative water content, as well as lower malondialdehyde content compared to wild-type plants under salt stress. Fluorescence parameters such as post-illumination rise (PIR), the prompt chlorophyll a fluorescence transient (OJIP), modulated 820-nm reflection (MR), and delayed chlorophyll a fluorescence (DF) remained relatively normal in transgenic plants during salt stress. These results indicate that expression of ZmNdhl1, ZmNdhl2, or OsNdhl increases cyclic electron transport activity, slows down damage to linear electron transport, alleviates oxidative damage to the PSI reaction center and plastocyanin, and reduces damage to electron transport on the receptor side of PSI in rice leaves under salt stress. Thus, expression of Ndhl genes from maize or rice improves salt tolerance by enhancing photosynthetic electron transport in rice. Maize and rice Ndhl genes played a similar role in enhancing salinity tolerance and avoiding photosynthetic damage.
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Affiliation(s)
- Yonghui He
- Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding/Key Laboratory of Plant Functional Genomics of the Ministry of Education/ Jiangsu Key Laboratory of Crop Genetics and Physiology/ Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education/ Key Laboratory of Saline-alkali Soil Improvement and Utilization (Coastal Saline-alkali Lands) of the Ministry of Agriculture and Rural Affairs, Agricultural College of Yangzhou University, Yangzhou, 225009, China; Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, 225009, China
| | - Chengcheng Lu
- Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding/Key Laboratory of Plant Functional Genomics of the Ministry of Education/ Jiangsu Key Laboratory of Crop Genetics and Physiology/ Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education/ Key Laboratory of Saline-alkali Soil Improvement and Utilization (Coastal Saline-alkali Lands) of the Ministry of Agriculture and Rural Affairs, Agricultural College of Yangzhou University, Yangzhou, 225009, China
| | - Zifan Jiang
- Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding/Key Laboratory of Plant Functional Genomics of the Ministry of Education/ Jiangsu Key Laboratory of Crop Genetics and Physiology/ Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education/ Key Laboratory of Saline-alkali Soil Improvement and Utilization (Coastal Saline-alkali Lands) of the Ministry of Agriculture and Rural Affairs, Agricultural College of Yangzhou University, Yangzhou, 225009, China
| | - Yu Sun
- Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding/Key Laboratory of Plant Functional Genomics of the Ministry of Education/ Jiangsu Key Laboratory of Crop Genetics and Physiology/ Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education/ Key Laboratory of Saline-alkali Soil Improvement and Utilization (Coastal Saline-alkali Lands) of the Ministry of Agriculture and Rural Affairs, Agricultural College of Yangzhou University, Yangzhou, 225009, China
| | - Huanhuan Liu
- Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding/Key Laboratory of Plant Functional Genomics of the Ministry of Education/ Jiangsu Key Laboratory of Crop Genetics and Physiology/ Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education/ Key Laboratory of Saline-alkali Soil Improvement and Utilization (Coastal Saline-alkali Lands) of the Ministry of Agriculture and Rural Affairs, Agricultural College of Yangzhou University, Yangzhou, 225009, China; Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, 225009, China
| | - Zhitong Yin
- Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding/Key Laboratory of Plant Functional Genomics of the Ministry of Education/ Jiangsu Key Laboratory of Crop Genetics and Physiology/ Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education/ Key Laboratory of Saline-alkali Soil Improvement and Utilization (Coastal Saline-alkali Lands) of the Ministry of Agriculture and Rural Affairs, Agricultural College of Yangzhou University, Yangzhou, 225009, China; Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, 225009, China.
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6
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Zhang Q, Tian S, Chen G, Tang Q, Zhang Y, Fleming AJ, Zhu XG, Wang P. Regulatory NADH dehydrogenase-like complex optimizes C 4 photosynthetic carbon flow and cellular redox in maize. THE NEW PHYTOLOGIST 2024; 241:82-101. [PMID: 37872738 DOI: 10.1111/nph.19332] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2023] [Accepted: 09/20/2023] [Indexed: 10/25/2023]
Abstract
C4 plants typically operate a CO2 concentration mechanism from mesophyll (M) cells into bundle sheath (BS) cells. NADH dehydrogenase-like (NDH) complex is enriched in the BS cells of many NADP-malic enzyme (ME) type C4 plants and is more abundant in C4 than in C3 plants, but to what extent it is involved in the CO2 concentration mechanism remains to be experimentally investigated. We created maize and rice mutants deficient in NDH function and then used a combination of transcriptomic, proteomic, and metabolomic approaches for comparative analysis. Considerable decreases in growth, photosynthetic activities, and levels of key photosynthetic proteins were observed in maize but not rice mutants. However, transcript abundance for many cyclic electron transport (CET) and Calvin-Benson cycle components, as well as BS-specific C4 enzymes, was increased in maize mutants. Metabolite analysis of the maize ndh mutants revealed an increased NADPH : NADP ratio, as well as malate, ribulose 1,5-bisphosphate (RuBP), fructose 1,6-bisphosphate (FBP), and photorespiration intermediates. We suggest that by optimizing NADPH and malate levels and adjusting NADP-ME activity, NDH functions to balance metabolic and redox states in the BS cells of maize (in addition to ATP supply), coordinating photosynthetic transcript abundance and protein content, thus directly regulating the carbon flow in the two-celled C4 system of maize.
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Affiliation(s)
- Qiqi Zhang
- CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Shilong Tian
- University of Chinese Academy of Sciences, Beijing, China
| | - Genyun Chen
- CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Qiming Tang
- CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yijing Zhang
- State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Department of Biochemistry, Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai, 200438, China
| | - Andrew J Fleming
- School of Biosciences, University of Sheffield, Western Bank, Sheffield, S10 2TN, UK
| | - Xin-Guang Zhu
- CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Peng Wang
- CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
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7
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Huang CF, Liu WY, Yu CP, Wu SH, Ku MSB, Li WH. C 4 leaf development and evolution. CURRENT OPINION IN PLANT BIOLOGY 2023; 76:102454. [PMID: 37743123 DOI: 10.1016/j.pbi.2023.102454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2023] [Revised: 07/30/2023] [Accepted: 08/25/2023] [Indexed: 09/26/2023]
Abstract
C4 photosynthesis is more efficient than C3 photosynthesis for two reasons. First, C4 plants have evolved efficient C4 enzymes to suppress wasteful photorespiration and enhance CO2 fixation. Second, C4 leaves have Kranz anatomy in which the veins are surrounded by one layer of bundle sheath (BS) cells and one layer of mesophyll (M) cells. The BS and M cells are functionally well differentiated and also well coordinated for rapid assimilation of atmospheric CO2 and transport of photo-assimilates between the two types of cells. Recent comparative transcriptomics of developing M and BS cells in young maize embryonic leaves revealed not only potential regulators of BS and M cell differentiation but also rapid early BS cell differentiation whereas slower, more prolonged M cell differentiation, contrary to the traditional view of a far simpler process of M cell development. Moreover, new upstream regulators of Kranz anatomy development have been identified and a number of gene co-expression modules for early vascular development have been inferred. Also, a candidate gene regulatory network associated with Kranz anatomy and vascular development has been constructed. Additionally, how whole genome duplication (WGD) may facilitate C4 evolution has been studied and the reasons for why the same WGD event led to successful C4 evolution in Gynandropsis gynandra but not in the sister species Tarenaya hassleriana have been proposed. Finally, new future research directions are suggested.
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Affiliation(s)
- Chi-Fa Huang
- Biodiversity Research Center, Academia Sinica, 115 Taipei, Taiwan
| | - Wen-Yu Liu
- Biodiversity Research Center, Academia Sinica, 115 Taipei, Taiwan
| | - Chun-Ping Yu
- Biodiversity Research Center, Academia Sinica, 115 Taipei, Taiwan
| | - Shu-Hsing Wu
- Institute of Plant and Microbial Biology, Academia Sinica, 115 Taipei, Taiwan
| | - Maurice S B Ku
- Institute of Bioagricultural Science, National Chiayi University, 600 Chiayi, Taiwan.
| | - Wen-Hsiung Li
- Biodiversity Research Center, Academia Sinica, 115 Taipei, Taiwan; Department of Ecology and Evolution, University of Chicago, Chicago 60637, USA.
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8
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Yogadasan N, Doxey AC, Chuong SDX. A Machine Learning Framework Identifies Plastid-Encoded Proteins Harboring C3 and C4 Distinguishing Sequence Information. Genome Biol Evol 2023; 15:evad129. [PMID: 37462292 PMCID: PMC10368328 DOI: 10.1093/gbe/evad129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/12/2023] [Indexed: 07/27/2023] Open
Abstract
C4 photosynthesis is known to have at least 61 independent origins across plant lineages making it one of the most notable examples of convergent evolution. Of the >60 independent origins, a predicted 22-24 origins, encompassing greater than 50% of all known C4 species, exist within the Panicoideae, Arundinoideae, Chloridoideae, Micrairoideae, Aristidoideae, and Danthonioideae (PACMAD) clade of the Poaceae family. This clade is therefore primed with species ideal for the study of genomic changes associated with the acquisition of the C4 photosynthetic trait. In this study, we take advantage of the growing availability of sequenced plastid genomes and employ a machine learning (ML) approach to screen for plastid genes harboring C3 and C4 distinguishing information in PACMAD species. We demonstrate that certain plastid-encoded protein sequences possess distinguishing and informative sequence information that allows them to train accurate ML C3/C4 classification models. Our RbcL-trained model, for example, informs a C3/C4 classifier with greater than 99% accuracy. Accurate prediction of photosynthetic type from individual sequences suggests biologically relevant, and potentially differing roles of these sequence products in C3 versus C4 metabolism. With this ML framework, we have identified several key sequences and sites that are most predictive of C3/C4 status, including RbcL, subunits of the NAD(P)H dehydrogenase complex, and specific residues within, further highlighting their potential significance in the evolution and/or maintenance of C4 photosynthetic machinery. This general approach can be applied to uncover intricate associations between other similar genotype-phenotype relationships.
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Affiliation(s)
| | - Andrew C Doxey
- Department of Biology, University of Waterloo, Waterloo, ON, Canada
| | - Simon D X Chuong
- Department of Biology, University of Waterloo, Waterloo, ON, Canada
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Ermakova M, Woodford R, Taylor Z, Furbank RT, Belide S, von Caemmerer S. Faster induction of photosynthesis increases biomass and grain yield in glasshouse-grown transgenic Sorghum bicolor overexpressing Rieske FeS. PLANT BIOTECHNOLOGY JOURNAL 2023; 21:1206-1216. [PMID: 36789455 DOI: 10.1111/pbi.14030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 02/08/2023] [Indexed: 05/27/2023]
Abstract
Sorghum is one of the most important crops providing food and feed in many of the world's harsher environments. Sorghum utilizes the C4 pathway of photosynthesis in which a biochemical carbon-concentrating mechanism results in high CO2 assimilation rates. Overexpressing the Rieske FeS subunit of the Cytochrome b6 f complex was previously shown to increase the rate of photosynthetic electron transport and stimulate CO2 assimilation in the model C4 plant Setaria viridis. To test whether productivity of C4 crops could be improved by Rieske overexpression, we created transgenic Sorghum bicolor Tx430 plants with increased Rieske content. The transgenic plants showed no marked changes in abundances of other photosynthetic proteins or chlorophyll content. The steady-state rates of electron transport and CO2 assimilation did not differ between the plants with increased Rieske abundance and control plants, suggesting that Cytochrome b6 f is not the only factor limiting electron transport in sorghum at high light and high CO2 . However, faster responses of non-photochemical quenching as well as an elevated quantum yield of Photosystem II and an increased CO2 assimilation rate were observed from the plants overexpressing Rieske during the photosynthetic induction, a process of activation of photosynthesis upon the dark-light transition. As a consequence, sorghum with increased Rieske content produced more biomass and grain when grown in glasshouse conditions. Our results indicate that increasing Rieske content has potential to boost productivity of sorghum and other C4 crops by improving the efficiency of light utilization and conversion to biomass through the faster induction of photosynthesis.
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Affiliation(s)
- Maria Ermakova
- Centre of Excellence for Translational Photosynthesis, Division of Plant Science, Research School of Biology, The Australian National University, Acton, ACT, Australia
- School of Biological Sciences, Monash University, Melbourne, Vic, Australia
| | - Russell Woodford
- Centre of Excellence for Translational Photosynthesis, Division of Plant Science, Research School of Biology, The Australian National University, Acton, ACT, Australia
| | - Zachary Taylor
- Centre of Excellence for Translational Photosynthesis, Division of Plant Science, Research School of Biology, The Australian National University, Acton, ACT, Australia
- Max Planck Institute of Molecular Plant Physiology, Potsdam, Brandenburg, Germany
| | - Robert T Furbank
- Centre of Excellence for Translational Photosynthesis, Division of Plant Science, Research School of Biology, The Australian National University, Acton, ACT, Australia
| | | | - Susanne von Caemmerer
- Centre of Excellence for Translational Photosynthesis, Division of Plant Science, Research School of Biology, The Australian National University, Acton, ACT, Australia
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10
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Amy Lyu MJ, Tang Q, Wang Y, Essemine J, Chen F, Ni X, Chen G, Zhu XG. Evolution of gene regulatory network of C 4 photosynthesis in the genus Flaveria reveals the evolutionary status of C 3-C 4 intermediate species. PLANT COMMUNICATIONS 2023; 4:100426. [PMID: 35986514 PMCID: PMC9860191 DOI: 10.1016/j.xplc.2022.100426] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Revised: 06/16/2022] [Accepted: 08/11/2022] [Indexed: 06/15/2023]
Abstract
C4 photosynthesis evolved from ancestral C3 photosynthesis by recruiting pre-existing genes to fulfill new functions. The enzymes and transporters required for the C4 metabolic pathway have been intensively studied and well documented; however, the transcription factors (TFs) that regulate these C4 metabolic genes are not yet well understood. In particular, how the TF regulatory network of C4 metabolic genes was rewired during the evolutionary process is unclear. Here, we constructed gene regulatory networks (GRNs) for four closely evolutionarily related species from the genus Flaveria, which represent four different evolutionary stages of C4 photosynthesis: C3 (F. robusta), type I C3-C4 (F. sonorensis), type II C3-C4 (F. ramosissima), and C4 (F. trinervia). Our results show that more than half of the co-regulatory relationships between TFs and core C4 metabolic genes are species specific. The counterparts of the C4 genes in C3 species were already co-regulated with photosynthesis-related genes, whereas the required TFs for C4 photosynthesis were recruited later. The TFs involved in C4 photosynthesis were widely recruited in the type I C3-C4 species; nevertheless, type II C3-C4 species showed a divergent GRN from C4 species. In line with these findings, a 13CO2 pulse-labeling experiment showed that the CO2 initially fixed into C4 acid was not directly released to the Calvin-Benson-Bassham cycle in the type II C3-C4 species. Therefore, our study uncovered dynamic changes in C4 genes and TF co-regulation during the evolutionary process; furthermore, we showed that the metabolic pathway of the type II C3-C4 species F. ramosissima represents an alternative evolutionary solution to the ammonia imbalance in C3-C4 intermediate species.
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Affiliation(s)
- Ming-Ju Amy Lyu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Qiming Tang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China; University of Chinese Academy of Sciences
| | - Yanjie Wang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China; University of Chinese Academy of Sciences
| | - Jemaa Essemine
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Faming Chen
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Xiaoxiang Ni
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China; University of Chinese Academy of Sciences
| | - Genyun Chen
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Xin-Guang Zhu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China.
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11
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Chen Q, Lan Y, Li Q, Kong M, Mi H. Inactivation of photosynthetic cyclic electron transports upregulates photorespiration for compensation of efficient photosynthesis in Arabidopsis. FRONTIERS IN PLANT SCIENCE 2023; 14:1061434. [PMID: 37123850 PMCID: PMC10130413 DOI: 10.3389/fpls.2023.1061434] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/04/2022] [Accepted: 03/21/2023] [Indexed: 05/03/2023]
Abstract
Plants have multiple mechanisms to maintain efficient photosynthesis. Photosynthetic cyclic electron transports around photosystem I (CET), which includes the PGR5/PGRL1 and NDH pathways, and photorespiration play a crucial role in photosynthetic efficiency. However, how these two mechanisms are functionally linked is not clear. In this study, we revealed that photorespiration could compensate for the function of CET in efficient photosynthesis by comparison of the growth phenotypes, photosynthetic properties monitored with chlorophyll fluorescence parameters and photosynthetic oxygen evolution in leaves and photorespiratory activity monitored with the difference of photosynthetic oxygen evolution rate under high and low concentration of oxygen conditions between the deleted mutant PGR5 or PGRL1 under NDH defective background (pgr5 crr2 or pgrl1a1b crr2). Both CET mutants pgr5 crr2 and pgrl1a1b crr2 displayed similar suppression effects on photosynthetic capacities of light reaction and growth phenotypes under low light conditions. However, the total CET activity and photosynthetic oxygen evolution of pgr5 crr2 were evidently lower than those of pgrl1a1b crr2, accompanied by the upregulation of photorespiratory activity under low light conditions, resulting in severe suppression of photosynthetic capacities of light reaction and finally photodamaged phenotype under high light or fluctuating light conditions. Based on these findings, we suggest that photorespiration compensates for the loss of CET functions in the regulation of photosynthesis and that coordination of both mechanisms is essential for maintaining the efficient operation of photosynthesis, especially under stressed conditions.
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12
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Munekage YN, Taniguchi YY. A scheme for C 4 evolution derived from a comparative analysis of the closely related C 3, C 3-C 4 intermediate, C 4-like, and C 4 species in the genus Flaveria. PLANT MOLECULAR BIOLOGY 2022; 110:445-454. [PMID: 35119574 DOI: 10.1007/s11103-022-01246-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Accepted: 01/21/2022] [Indexed: 06/14/2023]
Abstract
A comparative analysis of the genus Flaveria showed a C4 evolutionary process in which the anatomical and metabolic features of C4 photosynthesis were gradually acquired through C3-C4 intermediate stages. C4 photosynthesis has been acquired in multiple lineages of angiosperms during evolution to suppress photorespiration. Crops that perform C4 photosynthesis exhibit high rates of CO2 assimilation and high grain production even under high-temperature in semiarid environments; therefore, engineering C4 photosynthesis in C3 plants is of great importance in the application field. The genus Flaveria contains a large number of C3, C3-C4 intermediate, C4-like, and C4 species, making it a good model genus to study the evolution of C4 photosynthesis, and these studies indicate the direction for C4 engineering. C4 photosynthesis was acquired gradually through the C3-C4 intermediate stage. First, a two-celled C2 cycle called C2 photosynthesis was acquired by localizing glycine decarboxylase activity in the mitochondria of bundle sheath cells. With the development of two-cell metabolism, anatomical features also changed. Next, the replacement of the two-celled C2 cycle by the two-celled C4 cycle was induced by the acquisition of cell-selective expression in addition to the upregulation of enzymes in the C4 cycle during the C3-C4 intermediate stage. This was supported by an increase in cyclic electron transport activity in response to an increase in the ATP/NADPH demand for metabolism. Suppression of the C3 cycle in mesophyll cells was induced after the functional establishment of the C4 cycle, and optimization of electron transport by suppressing the activity of photosystem II also occurred during the final phase of C4 evolution.
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Affiliation(s)
- Yuri N Munekage
- School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo, 669-1337, Japan.
| | - Yukimi Y Taniguchi
- School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo, 669-1337, Japan
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13
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Riaz A, Deng F, Chen G, Jiang W, Zheng Q, Riaz B, Mak M, Zeng F, Chen ZH. Molecular Regulation and Evolution of Redox Homeostasis in Photosynthetic Machinery. Antioxidants (Basel) 2022; 11:antiox11112085. [PMID: 36358456 PMCID: PMC9686623 DOI: 10.3390/antiox11112085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2022] [Revised: 10/14/2022] [Accepted: 10/20/2022] [Indexed: 01/14/2023] Open
Abstract
The recent advances in plant biology have significantly improved our understanding of reactive oxygen species (ROS) as signaling molecules in the redox regulation of complex cellular processes. In plants, free radicals and non-radicals are prevalent intra- and inter-cellular ROS, catalyzing complex metabolic processes such as photosynthesis. Photosynthesis homeostasis is maintained by thiol-based systems and antioxidative enzymes, which belong to some of the evolutionarily conserved protein families. The molecular and biological functions of redox regulation in photosynthesis are usually to balance the electron transport chain, photosystem II, photosystem I, mesophyll and bundle sheath signaling, and photo-protection regulating plant growth and productivity. Here, we review the recent progress of ROS signaling in photosynthesis. We present a comprehensive comparative bioinformatic analysis of redox regulation in evolutionary distinct photosynthetic cells. Gene expression, phylogenies, sequence alignments, and 3D protein structures in representative algal and plant species revealed conserved key features including functional domains catalyzing oxidation and reduction reactions. We then discuss the antioxidant-related ROS signaling and important pathways for achieving homeostasis of photosynthesis. Finally, we highlight the importance of plant responses to stress cues and genetic manipulation of disturbed redox status for balanced and enhanced photosynthetic efficiency and plant productivity.
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Affiliation(s)
- Adeel Riaz
- Hubei Collaborative Innovation Center for Grain Industry, College of Agriculture, Yangtze University, Jingzhou 414000, China
| | - Fenglin Deng
- Hubei Collaborative Innovation Center for Grain Industry, College of Agriculture, Yangtze University, Jingzhou 414000, China
| | - Guang Chen
- College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Wei Jiang
- Hubei Collaborative Innovation Center for Grain Industry, College of Agriculture, Yangtze University, Jingzhou 414000, China
| | - Qingfeng Zheng
- Hubei Collaborative Innovation Center for Grain Industry, College of Agriculture, Yangtze University, Jingzhou 414000, China
| | - Bisma Riaz
- Department of Biotechnology, University of Okara, Okara, Punjab 56300, Pakistan
| | - Michelle Mak
- School of Science, Western Sydney University, Penrith, NSW 2751, Australia
| | - Fanrong Zeng
- Hubei Collaborative Innovation Center for Grain Industry, College of Agriculture, Yangtze University, Jingzhou 414000, China
- Correspondence: (F.Z.); (Z.-H.C.)
| | - Zhong-Hua Chen
- School of Science, Western Sydney University, Penrith, NSW 2751, Australia
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia
- Correspondence: (F.Z.); (Z.-H.C.)
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14
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Shuyskaya E, Rakhmankulova Z, Prokofieva M, Saidova L, Toderich K, Voronin P. Intensity and duration of salinity required to form adaptive response in C 4 halophyte Kochia prostrata (L.) Shrad. FRONTIERS IN PLANT SCIENCE 2022; 13:955880. [PMID: 36275591 PMCID: PMC9585317 DOI: 10.3389/fpls.2022.955880] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Accepted: 09/20/2022] [Indexed: 06/16/2023]
Abstract
Plant adaptation to salinity is a highly multifaceted process, harnessing various physiological mechanisms depending on the severity and duration of salt stress. This study focuses on the effects of 4- and 10-day treatments with low (100 mM NaCl) and moderate (200 mM NaCl) salinity on growth, CO2/H2O gas exchange, stomatal apparatus performance, the efficiency of photosystems I and II (PS I and II), content of key C4 photosynthesis enzymes, and the accumulation of Na+, K+, and proline in shoots of the widespread forage C4 halophyte Kochia prostrata. Our data show that 4 days of low salinity treatment resulted in a decrease in biomass, intensity of apparent photosynthesis, and cyclic electron transport around PS I. It was accompanied by an increase in transpiration and Rubisco and PEPC contents, while the Na+ and proline contents were low in K. prostrata shoots. By the 10th day of salinity, Na+ and proline have accumulated; PS I function has stabilized, while PS II efficiency has decreased due to the enhanced non-photochemical quenching of chlorophyll fluorescence (NPQ). Thus, under low salinity conditions, Na+ accumulated slowly and the imbalance between light and dark reactions of photosynthesis was observed. These processes might be induced by an early sodium signaling wave that affects cellular pH and ion homeostasis, ultimately disturbing photosynthetic electron transport. Another adaptive reaction more "typical" of salt-tolerant species was observed at 200 mM NaCl treatment. It proceeds in two stages. First, during the first 4 days, dry biomass and apparent photosynthesis decrease, whereas stomata sensitivity and dissipation energy during dark respiration increase. In parallel, an active Na+ accumulation and a decreased K+/Na+ ratio take place. Second, by the 10th day, a fully-fledged adaptive response was formed, when growth and apparent photosynthesis stabilized and stomata closed. Decreased dissipation energy, increased WUE, stabilization of Rubisco and PEPC contents, and decreased proline content testify to the completion of the adaptation and stabilization of the physiological state of plants. The obtained results allowed us to conclude that the formation of a full-fledged salt-tolerant response common for halophytes in K. prostrata occurs by the 10th day of moderate salinity.
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Affiliation(s)
- Elena Shuyskaya
- K.A. Timiryazev Institute of Plant Physiology Russian Academy of Science, Moscow, Russia
| | - Zulfira Rakhmankulova
- K.A. Timiryazev Institute of Plant Physiology Russian Academy of Science, Moscow, Russia
| | - Maria Prokofieva
- K.A. Timiryazev Institute of Plant Physiology Russian Academy of Science, Moscow, Russia
| | - Luizat Saidova
- K.A. Timiryazev Institute of Plant Physiology Russian Academy of Science, Moscow, Russia
| | - Kristina Toderich
- International Platform for Dryland Research and Education, Tottori University, Tottori City, Japan
| | - Pavel Voronin
- K.A. Timiryazev Institute of Plant Physiology Russian Academy of Science, Moscow, Russia
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15
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Leister D, Marino G, Minagawa J, Dann M. An ancient function of PGR5 in iron delivery? TRENDS IN PLANT SCIENCE 2022; 27:971-980. [PMID: 35618596 DOI: 10.1016/j.tplants.2022.04.006] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2021] [Revised: 03/29/2022] [Accepted: 04/26/2022] [Indexed: 06/15/2023]
Abstract
In all phototrophic organisms, the photosynthetic apparatus must be protected from light-induced damage. One important mechanism that mitigates photodamage in plants is antimycin A (AA)-sensitive cyclic electron flow (CEF), the evolution of which remains largely obscure. Here we show that proton gradient regulation 5 (PGR5), a key protein involved in AA-sensitive CEF, displays intriguing commonalities - including sequence and structural features - with a group of ferritin-like proteins. We therefore propose that PGR5 may originally have been involved in prokaryotic iron mobilization and delivery, which facilitated a primordial type of CEF as a side effect. The abandonment of the bacterioferritin system during the transformation of cyanobacterial endosymbionts into chloroplasts might have allowed PGR5 to functionally specialize in CEF.
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Affiliation(s)
- Dario Leister
- Plant Molecular Biology, Faculty of Biology, Ludwig-Maximilians-Universität München, D-82152 Planegg-Martinsried, Germany
| | - Giada Marino
- Plant Molecular Biology, Faculty of Biology, Ludwig-Maximilians-Universität München, D-82152 Planegg-Martinsried, Germany
| | - Jun Minagawa
- Division of Environmental Photobiology, National Institute for Basic Biology, Okazaki 444-8585, Japan
| | - Marcel Dann
- Plant Molecular Biology, Faculty of Biology, Ludwig-Maximilians-Universität München, D-82152 Planegg-Martinsried, Germany; Division of Environmental Photobiology, National Institute for Basic Biology, Okazaki 444-8585, Japan.
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16
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Zhao YY, Lyu MA, Miao F, Chen G, Zhu XG. The evolution of stomatal traits along the trajectory toward C4 photosynthesis. PLANT PHYSIOLOGY 2022; 190:441-458. [PMID: 35652758 PMCID: PMC9434244 DOI: 10.1093/plphys/kiac252] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Accepted: 04/21/2022] [Indexed: 05/03/2023]
Abstract
C4 photosynthesis optimizes plant carbon and water relations, allowing high photosynthetic rates with low stomatal conductance. Stomata have long been considered a part of the C4 syndrome. However, it remains unclear how stomatal traits evolved along the path from C3 to C4. Here, we examined stomata in the Flaveria genus, a model used for C4 evolutionary study. Comparative, transgenic, and semi-in vitro experiments were performed to study the molecular basis that underlies the changes of stomatal traits in C4 evolution. The evolution from C3 to C4 species is accompanied by a gradual rather than an abrupt change in stomatal traits. The initial change appears near the Type I intermediate stage. Co-evolution of the photosynthetic pathway and stomatal traits is supported. On the road to C4, stomata tend to be fewer in number but larger in size and stomatal density dominates changes in anatomical maximum stomatal conductance (gsmax). Reduction of FSTOMAGEN expression underlies decreased gsmax in Flaveria and likely occurs in other C4 lineages. Decreased gsmax contributes to the increase in intrinsic water-use efficiency in C4 evolution. This work highlights the stomatal traits in the current C4 evolutionary model. Our study provides insights into the pattern, mechanism, and role of stomatal evolution along the road toward C4.
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Affiliation(s)
- Yong-Yao Zhao
- State Key Laboratory for Plant Molecular Genetics, Center of Excellence for Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Mingju Amy Lyu
- State Key Laboratory for Plant Molecular Genetics, Center of Excellence for Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
| | - FenFen Miao
- State Key Laboratory for Plant Molecular Genetics, Center of Excellence for Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Genyun Chen
- State Key Laboratory for Plant Molecular Genetics, Center of Excellence for Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
- University of Chinese Academy of Sciences, Beijing 100049, China
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17
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Sonmez MC, Ozgur R, Uzilday B, Turkan I, Ganie SA. Redox regulation in
C
3
and
C
4
plants during climate change and its implications on food security. Food Energy Secur 2022. [DOI: 10.1002/fes3.387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Affiliation(s)
| | - Rengin Ozgur
- Department of Biology Faculty of Science Ege University Izmir Turkey
- Graduate School of Life Sciences Tohoku University Sendai Japan
| | - Baris Uzilday
- Department of Biology Faculty of Science Ege University Izmir Turkey
- Graduate School of Life Sciences Tohoku University Sendai Japan
| | - Ismail Turkan
- Department of Biology Faculty of Science Ege University Izmir Turkey
| | - Showkat Ahmad Ganie
- Plant Molecular Science and Centre of Systems and Synthetic Biology Department of Biological Sciences Royal Holloway University of London Egham UK
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18
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Zhao H, Wang Y, Lyu MJA, Zhu XG. Two major metabolic factors for an efficient NADP-malic enzyme type C4 photosynthesis. PLANT PHYSIOLOGY 2022; 189:84-98. [PMID: 35166833 PMCID: PMC9070817 DOI: 10.1093/plphys/kiac051] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Accepted: 01/15/2022] [Indexed: 06/02/2023]
Abstract
Compared to the large number of studies focused on the factors controlling C3 photosynthesis efficiency, there are relatively fewer studies of the factors controlling photosynthetic efficiency in C4 leaves. Here, we used a dynamic systems model of C4 photosynthesis based on maize (Zea mays) to identify features associated with high photosynthetic efficiency in NADP-malic enzyme (NADP-ME) type C4 photosynthesis. We found that two additional factors related to coordination between C4 shuttle metabolism and C3 metabolism are required for efficient C4 photosynthesis: (1) accumulating a high concentration of phosphoenolpyruvate through maintaining a large PGA concentration in the mesophyll cell chloroplast and (2) maintaining a suitable oxidized status in bundle sheath cell chloroplasts. These identified mechanisms are in line with the current cellular location of enzymes/proteins involved in the starch synthesis, the Calvin-Benson cycle and photosystem II of NADP-ME type C4 photosynthesis. These findings suggested potential strategies for improving C4 photosynthesis and engineering C4 rice.
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Affiliation(s)
- Honglong Zhao
- Center of Excellence for Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
| | - Yu Wang
- The Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Champaign, Illinois 61801, USA
| | - Ming-Ju Amy Lyu
- Center of Excellence for Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
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19
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Wasilewska-Dębowska W, Zienkiewicz M, Drozak A. How Light Reactions of Photosynthesis in C4 Plants Are Optimized and Protected under High Light Conditions. Int J Mol Sci 2022; 23:ijms23073626. [PMID: 35408985 PMCID: PMC8998801 DOI: 10.3390/ijms23073626] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Revised: 03/23/2022] [Accepted: 03/24/2022] [Indexed: 02/04/2023] Open
Abstract
Most C4 plants that naturally occur in tropical or subtropical climates, in high light environments, had to evolve a series of adaptations of photosynthesis that allowed them to grow under these conditions. In this review, we summarize mechanisms that ensure the balancing of energy distribution, counteract photoinhibition, and allow the dissipation of excess light energy. They secure effective electron transport in light reactions of photosynthesis, which will lead to the production of NADPH and ATP. Furthermore, a higher content of the cyclic electron transport components and an increase in ATP production are observed, which is necessary for the metabolism of C4 for effective assimilation of CO2. Most of the data are provided by studies of the genus Flaveria, where species belonging to different metabolic subtypes and intermediate forms between C3 and C4 are present. All described mechanisms that function in mesophyll and bundle sheath chloroplasts, into which photosynthetic reactions are divided, may differ in metabolic subtypes as a result of the different organization of thylakoid membranes, as well as the different demand for ATP and NADPH. This indicates that C4 plants have plasticity in the utilization of pathways in which efficient use and dissipation of excitation energy are realized.
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20
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Borghi GL, Arrivault S, Günther M, Barbosa Medeiros D, Dell’Aversana E, Fusco GM, Carillo P, Ludwig M, Fernie AR, Lunn JE, Stitt M. Metabolic profiles in C3, C3-C4 intermediate, C4-like, and C4 species in the genus Flaveria. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:1581-1601. [PMID: 34910813 PMCID: PMC8890617 DOI: 10.1093/jxb/erab540] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Accepted: 12/14/2021] [Indexed: 05/22/2023]
Abstract
C4 photosynthesis concentrates CO2 around Rubisco in the bundle sheath, favouring carboxylation over oxygenation and decreasing photorespiration. This complex trait evolved independently in >60 angiosperm lineages. Its evolution can be investigated in genera such as Flaveria (Asteraceae) that contain species representing intermediate stages between C3 and C4 photosynthesis. Previous studies have indicated that the first major change in metabolism probably involved relocation of glycine decarboxylase and photorespiratory CO2 release to the bundle sheath and establishment of intercellular shuttles to maintain nitrogen stoichiometry. This was followed by selection for a CO2-concentrating cycle between phosphoenolpyruvate carboxylase in the mesophyll and decarboxylases in the bundle sheath, and relocation of Rubisco to the latter. We have profiled 52 metabolites in nine Flaveria species and analysed 13CO2 labelling patterns for four species. Our results point to operation of multiple shuttles, including movement of aspartate in C3-C4 intermediates and a switch towards a malate/pyruvate shuttle in C4-like species. The malate/pyruvate shuttle increases from C4-like to complete C4 species, accompanied by a rise in ancillary organic acid pools. Our findings support current models and uncover further modifications of metabolism along the evolutionary path to C4 photosynthesis in the genus Flaveria.
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Affiliation(s)
- Gian Luca Borghi
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Stéphanie Arrivault
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
- Correspondence:
| | - Manuela Günther
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
| | - David Barbosa Medeiros
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Emilia Dell’Aversana
- Universitá degli Studi della Campania, Dipartimento di Scienze e Tecnologie Ambientali, Biologiche e Farmaceutiche, Via Vivaldi 43, 81100 Caserta, Italy
| | - Giovanna Marta Fusco
- Universitá degli Studi della Campania, Dipartimento di Scienze e Tecnologie Ambientali, Biologiche e Farmaceutiche, Via Vivaldi 43, 81100 Caserta, Italy
| | - Petronia Carillo
- Universitá degli Studi della Campania, Dipartimento di Scienze e Tecnologie Ambientali, Biologiche e Farmaceutiche, Via Vivaldi 43, 81100 Caserta, Italy
| | - Martha Ludwig
- The University of Western Australia, School of Molecular Sciences, 35 Stirling Highway, 6009 Perth, Australia
| | - Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
| | - John E Lunn
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Mark Stitt
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
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21
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Prokofieva MY, Shuyskaya EV, Rakhmankulova ZF. Intraspecific Variability of Sedobassia sedoides Plants with Intermediate C3-C4 Type of Photosynthesis under Osmotic Stress Conditions. CONTEMP PROBL ECOL+ 2022. [DOI: 10.1134/s1995425522010061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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22
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Tanaka M, Ishikawa Y, Suzuki S, Ogawa T, Taniguchi YY, Miyagi A, Ishikawa T, Yamaguchi M, Munekage YN, Kawai-Yamada M. Change in expression levels of NAD kinase-encoding genes in Flaveria species. JOURNAL OF PLANT PHYSIOLOGY 2021; 265:153495. [PMID: 34411985 DOI: 10.1016/j.jplph.2021.153495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2021] [Revised: 08/06/2021] [Accepted: 08/09/2021] [Indexed: 06/13/2023]
Abstract
Nicotinamide adenine dinucleotides (NAD(H)) and NAD phosphates (NADP(H)) are electron carriers involved in redox reactions and metabolic processes in all organisms. NAD kinase (NADK) is the only enzyme that phosphorylates NAD+ into NADP+, using ATP as a phosphate donor. In NADP-dependent malic enzyme (NADP-ME)-type C4 photosynthesis, NADP(H) are required for dehydrogenation by NADP-dependent malate dehydrogenase (NADP-MDH) in mesophyll cells, and decarboxylation by NADP-ME in bundle sheath cells. In this study, we identified five NADK genes (FbNADK1a, 1b, 2a, 2b, and 3) from the C4 model species Flaveria bidentis. RNA-Seq database analysis revealed higher transcript abundance in one of the chloroplast-type NADK2 genes of C4F. bidentis (FbNADK2a). Comparative analysis of NADK activity in leaves of C3, C3-C4, and C4Flaveria showed that C4Flaveria (F. bidentis and F. trinervia) had higher NADK activity than the other photosynthetic-types of Flaveria. Taken together, our results suggest that chloroplastic NAD kinase appeared to increase in importance as C3 plants evolved into C4 plants in the genus Flaveria.
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Affiliation(s)
- Masami Tanaka
- Graduate School of Science and Engineering, Saitama University, 225 Shimo-Okubo, Sakura-ku, Saitama-city, Saitama 338-8570, Japan
| | - Yuuma Ishikawa
- Institute for Molecular Physiology, Heinrich-Heine-Universität, Cluster of Excellence on Plant Sciences (CEPLAS), Düsseldorf, Germany
| | - Sayaka Suzuki
- Graduate School of Science and Engineering, Saitama University, 225 Shimo-Okubo, Sakura-ku, Saitama-city, Saitama 338-8570, Japan
| | - Takako Ogawa
- School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
| | - Yukimi Y Taniguchi
- School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
| | - Atsuko Miyagi
- Graduate School of Science and Engineering, Saitama University, 225 Shimo-Okubo, Sakura-ku, Saitama-city, Saitama 338-8570, Japan
| | - Toshiki Ishikawa
- Graduate School of Science and Engineering, Saitama University, 225 Shimo-Okubo, Sakura-ku, Saitama-city, Saitama 338-8570, Japan
| | - Masatoshi Yamaguchi
- Graduate School of Science and Engineering, Saitama University, 225 Shimo-Okubo, Sakura-ku, Saitama-city, Saitama 338-8570, Japan
| | - Yuri N Munekage
- School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
| | - Maki Kawai-Yamada
- Graduate School of Science and Engineering, Saitama University, 225 Shimo-Okubo, Sakura-ku, Saitama-city, Saitama 338-8570, Japan.
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23
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Anderson CM, Mattoon EM, Zhang N, Becker E, McHargue W, Yang J, Patel D, Dautermann O, McAdam SAM, Tarin T, Pathak S, Avenson TJ, Berry J, Braud M, Niyogi KK, Wilson M, Nusinow DA, Vargas R, Czymmek KJ, Eveland AL, Zhang R. High light and temperature reduce photosynthetic efficiency through different mechanisms in the C 4 model Setaria viridis. Commun Biol 2021; 4:1092. [PMID: 34531541 PMCID: PMC8446033 DOI: 10.1038/s42003-021-02576-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2021] [Accepted: 08/03/2021] [Indexed: 11/09/2022] Open
Abstract
C4 plants frequently experience high light and high temperature conditions in the field, which reduce growth and yield. However, the mechanisms underlying these stress responses in C4 plants have been under-explored, especially the coordination between mesophyll (M) and bundle sheath (BS) cells. We investigated how the C4 model plant Setaria viridis responded to a four-hour high light or high temperature treatment at photosynthetic, transcriptomic, and ultrastructural levels. Although we observed a comparable reduction of photosynthetic efficiency in high light or high temperature treated leaves, detailed analysis of multi-level responses revealed important differences in key pathways and M/BS specificity responding to high light and high temperature. We provide a systematic analysis of high light and high temperature responses in S. viridis, reveal different acclimation strategies to these two stresses in C4 plants, discover unique light/temperature responses in C4 plants in comparison to C3 plants, and identify potential targets to improve abiotic stress tolerance in C4 crops.
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Affiliation(s)
| | - Erin M Mattoon
- Donald Danforth Plant Science Center, St. Louis, MO, USA.,Plant and Microbial Biosciences Program, Division of Biology and Biomedical Sciences, Washington University in Saint Louis, St. Louis, MO, USA
| | - Ningning Zhang
- Donald Danforth Plant Science Center, St. Louis, MO, USA
| | - Eric Becker
- Donald Danforth Plant Science Center, St. Louis, MO, USA
| | | | - Jiani Yang
- Donald Danforth Plant Science Center, St. Louis, MO, USA
| | - Dhruv Patel
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA
| | - Oliver Dautermann
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA
| | - Scott A M McAdam
- Purdue Center for Plant Biology, Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, USA
| | - Tonantzin Tarin
- Department of Plant and Soil Sciences, University of Delaware, Newark, DE, USA.,Instituto de Ecología, Universidad Nacional Autónoma de México, Mexico City, Mexico
| | - Sunita Pathak
- Donald Danforth Plant Science Center, St. Louis, MO, USA
| | - Tom J Avenson
- Department of Plant Sciences, University of Cambridge, Cambridge, UK
| | - Jeffrey Berry
- Donald Danforth Plant Science Center, St. Louis, MO, USA
| | - Maxwell Braud
- Donald Danforth Plant Science Center, St. Louis, MO, USA
| | - Krishna K Niyogi
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA.,Howard Hughes Medical Institute, Berkeley, CA, USA.,Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | | | | | - Rodrigo Vargas
- Department of Plant and Soil Sciences, University of Delaware, Newark, DE, USA
| | - Kirk J Czymmek
- Donald Danforth Plant Science Center, St. Louis, MO, USA
| | | | - Ru Zhang
- Donald Danforth Plant Science Center, St. Louis, MO, USA.
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24
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Stitt M, Luca Borghi G, Arrivault S. Targeted metabolite profiling as a top-down approach to uncover interspecies diversity and identify key conserved operational features in the Calvin-Benson cycle. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:5961-5986. [PMID: 34473300 PMCID: PMC8411860 DOI: 10.1093/jxb/erab291] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Accepted: 06/21/2021] [Indexed: 05/02/2023]
Abstract
Improving photosynthesis is a promising avenue to increase crop yield. This will be aided by better understanding of natural variance in photosynthesis. Profiling of Calvin-Benson cycle (CBC) metabolites provides a top-down strategy to uncover interspecies diversity in CBC operation. In a study of four C4 and five C3 species, principal components analysis separated C4 species from C3 species and also separated different C4 species. These separations were driven by metabolites that reflect known species differences in their biochemistry and pathways. Unexpectedly, there was also considerable diversity between the C3 species. Falling atmospheric CO2 and changing temperature, nitrogen, and water availability have driven evolution of C4 photosynthesis in multiple lineages. We propose that analogous selective pressures drove lineage-dependent evolution of the CBC in C3 species. Examples of species-dependent variation include differences in the balance between the CBC and the light reactions, and in the balance between regulated steps in the CBC. Metabolite profiles also reveal conserved features including inactivation of enzymes in low irradiance, and maintenance of CBC metabolites at relatively high levels in the absence of net CO2 fixation. These features may be important for photosynthetic efficiency in low light, fluctuating irradiance, and when stomata close due to low water availability.
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Affiliation(s)
- Mark Stitt
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Gian Luca Borghi
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Stéphanie Arrivault
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
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25
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Xu M, Tian X, Ku T, Wang G, Zhang E. Global Identification and Systematic Analysis of Lysine Malonylation in Maize ( Zea mays L.). FRONTIERS IN PLANT SCIENCE 2021; 12:728338. [PMID: 34490025 PMCID: PMC8417889 DOI: 10.3389/fpls.2021.728338] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Accepted: 08/02/2021] [Indexed: 05/27/2023]
Abstract
Lysine malonylation is a kind of post-translational modifications (PTMs) discovered in recent years, which plays an important regulatory role in plants. Maize (Zea mays L.) is a major global cereal crop. Immunoblotting revealed that maize was rich in malonylated proteins. We therefore performed a qualitative malonylome analysis to globally identify malonylated proteins in maize. In total, 1,722 uniquely malonylated lysine residues were obtained in 810 proteins. The modified proteins were involved in various biological processes such as photosynthesis, ribosome and oxidative phosphorylation. Notably, a large proportion of the modified proteins (45%) were located in chloroplast. Further functional analysis revealed that 30 proteins in photosynthesis and 15 key enzymes in the Calvin cycle were malonylated, suggesting an indispensable regulatory role of malonylation in photosynthesis and carbon fixation. This work represents the first comprehensive survey of malonylome in maize and provides an important resource for exploring the function of lysine malonylation in physiological regulation of maize.
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Affiliation(s)
- Min Xu
- College of Agronomy, Qingdao Agricultural University, Qingdao, China
| | - Xiaomin Tian
- College of Agronomy, Qingdao Agricultural University, Qingdao, China
| | - Tingting Ku
- College of Agronomy, Qingdao Agricultural University, Qingdao, China
| | - Guangyuan Wang
- Shandong Province Key Laboratory of Applied Mycology, College of Life Sciences, Qingdao Agricultural University, Qingdao, China
| | - Enying Zhang
- College of Agronomy, Qingdao Agricultural University, Qingdao, China
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26
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Lyu MJA, Gowik U, Kelly S, Covshoff S, Hibberd JM, Sage RF, Ludwig M, Wong GKS, Westhoff P, Zhu XG. The coordination of major events in C 4 photosynthesis evolution in the genus Flaveria. Sci Rep 2021; 11:15618. [PMID: 34341365 PMCID: PMC8329263 DOI: 10.1038/s41598-021-93381-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2021] [Accepted: 05/31/2021] [Indexed: 12/13/2022] Open
Abstract
C4 photosynthesis is a remarkable complex trait, elucidations of the evolutionary trajectory of C4 photosynthesis from its ancestral C3 pathway can help us better understand the generic principles of the evolution of complex traits and guide the engineering of C3 crops for higher yields. Here, we used the genus Flaveria that contains C3, C3-C4, C4-like and C4 species as a system to study the evolution of C4 photosynthesis. We first mapped transcript abundance, protein sequence and morphological features onto the phylogenetic tree of the genus Flaveria, and calculated the evolutionary correlation of different features; we then predicted the relative changes of ancestral nodes of those features to illustrate the major events during the evolution of C4 photosynthesis. We found that gene expression and protein sequence showed consistent modification patterns in the phylogenetic tree. High correlation coefficients ranging from 0.46 to 0.9 among gene expression, protein sequence and morphology were observed. The greatest modification of those different features consistently occurred at the transition between C3-C4 species and C4-like species. Our results show highly coordinated changes in gene expression, protein sequence and morphological features, which support evolutionary major events during the evolution of C4 metabolism.
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Affiliation(s)
- Ming-Ju Amy Lyu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Udo Gowik
- Institute of Plant Molecular and Developmental Biology, Heinrich-Heine-University, Dusseldorf, Germany
| | - Steve Kelly
- Department of Plant Sciences, University of Oxford, Oxford, UK
| | - Sarah Covshoff
- Department of Plant Sciences, University of Cambridge, Cambridge, UK
| | - Julian M Hibberd
- Department of Plant Sciences, University of Cambridge, Cambridge, UK
| | - Rowan F Sage
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Canada
| | - Martha Ludwig
- School of Molecular Sciences, University of Western Australia, Crawley, WA, Australia
| | - Gane Ka-Shu Wong
- BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen, 518083, China
- Department of Medicine and Department of Biological Sciences, The University of Alberta, Edmonton, AB, T6G 2E1, Canada
| | - Peter Westhoff
- Institute of Plant Molecular and Developmental Biology, Heinrich-Heine-University, Dusseldorf, Germany
| | - Xin-Guang Zhu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China.
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27
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Taniguchi YY, Gowik U, Kinoshita Y, Kishizaki R, Ono N, Yokota A, Westhoff P, Munekage YN. Dynamic changes of genome sizes and gradual gain of cell-specific distribution of C 4 enzymes during C 4 evolution in genus Flaveria. THE PLANT GENOME 2021; 14:e20095. [PMID: 33913619 DOI: 10.1002/tpg2.20095] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Accepted: 02/20/2021] [Indexed: 06/12/2023]
Abstract
C4 plants are believed to have evolved from C3 plants through various C3 -C4 intermediate stages in which a photorespiration-dependent CO2 concentration system known as C2 photosynthesis operates. Genes involved in the C4 cycle were thought to be recruited from orthologs present in C3 species and developed cell-specific expression during C4 evolution. To understand the process of establishing C4 photosynthesis, we performed whole-genome sequencing and investigated expression and mesophyll- or bundle-sheath-cell-specific localization of phosphoenolpyruvate carboxylase (PEPC), NADP-malic enzyme (NADP-ME), pyruvate, orthophosphate dikinase (PPDK) in C3 , C3 -C4 intermediate, C4 -like, and C4 Flaveria species. While genome sizes vary greatly, the number of predicted protein-coding genes was similar among C3 , C3 -C4 intermediate, C4 -like, and C4 Flaveria species. Cell-specific localization of the PEPC, NADP-ME, and PPDK transcripts was insignificant or weak in C3 -C4 intermediate species, whereas these transcripts were expressed cell-type specific in C4 -like species. These results showed that elevation of gene expression and cell-specific control of pre-existing C4 cycle genes in C3 species was involved in C4 evolution. Gene expression was gradually enhanced during C4 evolution, whereas cell-specific control was gained independently of quantitative transcriptional activation during evolution from C3 -C4 intermediate to C4 photosynthesis in genus Flaveria.
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Affiliation(s)
- Yukimi Y Taniguchi
- School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo, 669-1337, Japan
| | - Udo Gowik
- Institute of Plant Molecular and Developmental Biology, Heinrich Heine University, Universitätsstr. 1, Dusseldorf, 40225, Germany
| | - Yuto Kinoshita
- School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo, 669-1337, Japan
| | - Risa Kishizaki
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192, Japan
| | - Naoaki Ono
- Data Science Center, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192, Japan
| | - Akiho Yokota
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192, Japan
| | - Peter Westhoff
- Institute of Plant Molecular and Developmental Biology, Heinrich Heine University, Universitätsstr. 1, Dusseldorf, 40225, Germany
| | - Yuri N Munekage
- School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo, 669-1337, Japan
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28
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Huang CF, Liu WY, Jade Lu MY, Chen YH, Ku MSB, Li WH. Whole genome duplication facilitated the evolution of C4 photosynthesis in Gynandropsis gynandra. Mol Biol Evol 2021; 38:4715-4731. [PMID: 34191030 PMCID: PMC8557433 DOI: 10.1093/molbev/msab200] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
In higher plants, whole-genome duplication (WGD) is thought to facilitate the evolution of C4 photosynthesis from C3 photosynthesis. To understand this issue, we used new and existing leaf-development transcriptomes to construct two coding sequence databases for C4Gynandropsis gynandra and C3Tarenaya hassleriana, which shared a WGD before their divergence. We compared duplicated genes in the two species and found that the WGD contributed to four aspects of the evolution of C4 photosynthesis in G. gynandra. First, G. gynandra has retained the duplicates of ALAAT (alanine aminotransferase) and GOGAT (glutamine oxoglutarate aminotransferase) for nitrogen recycling to establish a photorespiratory CO2 pump in bundle sheath (BS) cells for increasing photosynthesis efficiency, suggesting that G. gynandra experienced a C3–C4 intermediate stage during the C4 evolution. Second, G. gynandra has retained almost all known vein-development-related paralogous genes derived from the WGD event, likely contributing to the high vein complexity of G. gynandra. Third, the WGD facilitated the evolution of C4 enzyme genes and their recruitment into the C4 pathway. Fourth, several genes encoding photosystem I proteins were derived from the WGD and are upregulated in G. gynandra, likely enabling the NADH dehydrogenase-like complex to produce extra ATPs for the C4 CO2 concentration mechanism. Thus, the WGD apparently played an enabler role in the evolution of C4 photosynthesis in G. gynandra. Importantly, an ALAAT duplicate became highly expressed in BS cells in G. gynandra, facilitating nitrogen recycling and transition to the C4 cycle. This study revealed how WDG may facilitate C4 photosynthesis evolution.
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Affiliation(s)
- Chi-Fa Huang
- Biodiversity Research Center, Academia Sinica, Taipei, 11529, Taiwan
| | - Wen-Yu Liu
- Biodiversity Research Center, Academia Sinica, Taipei, 11529, Taiwan
| | - Mei-Yeh Jade Lu
- Biodiversity Research Center, Academia Sinica, Taipei, 11529, Taiwan
| | - Yi-Hua Chen
- Biodiversity Research Center, Academia Sinica, Taipei, 11529, Taiwan
| | - Maurice S B Ku
- Department of Bioagricultural Science, National Chiayi University, Chiayi, 600, Taiwan
| | - Wen-Hsiung Li
- Biodiversity Research Center, Academia Sinica, Taipei, 11529, Taiwan.,Department of Ecology and Evolution, University of Chicago, Chicago, 60637, USA
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29
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Ermakova M, Bellasio C, Fitzpatrick D, Furbank RT, Mamedov F, von Caemmerer S. Upregulation of bundle sheath electron transport capacity under limiting light in C 4 Setaria viridis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 106:1443-1454. [PMID: 33772896 PMCID: PMC9291211 DOI: 10.1111/tpj.15247] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Revised: 02/15/2021] [Accepted: 03/22/2021] [Indexed: 05/22/2023]
Abstract
C4 photosynthesis is a biochemical pathway that operates across mesophyll and bundle sheath (BS) cells to increase CO2 concentration at the site of CO2 fixation. C4 plants benefit from high irradiance but their efficiency decreases under shade, causing a loss of productivity in crop canopies. We investigated shade acclimation responses of Setaria viridis, a model monocot of NADP-dependent malic enzyme subtype, focussing on cell-specific electron transport capacity. Plants grown under low light (LL) maintained CO2 assimilation rates similar to high light plants but had an increased chlorophyll and light-harvesting-protein content, predominantly in BS cells. Photosystem II (PSII) protein abundance, oxygen-evolving activity and the PSII/PSI ratio were enhanced in LL BS cells, indicating a higher capacity for linear electron flow. Abundances of PSI, ATP synthase, Cytochrome b6 f and the chloroplast NAD(P)H dehydrogenase complex, which constitute the BS cyclic electron flow machinery, were also increased in LL plants. A decline in PEP carboxylase activity in mesophyll cells and a consequent shortage of reducing power in BS chloroplasts were associated with a more oxidised plastoquinone pool in LL plants and the formation of PSII - light-harvesting complex II supercomplexes with an increased oxygen evolution rate. Our results suggest that the supramolecular composition of PSII in BS cells is adjusted according to the redox state of the plastoquinone pool. This discovery contributes to the understanding of the acclimation of PSII activity in C4 plants and will support the development of strategies for crop improvement, including the engineering of C4 photosynthesis into C3 plants.
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Affiliation(s)
- Maria Ermakova
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonAustralian Capital Territory2601Australia
| | - Chandra Bellasio
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonAustralian Capital Territory2601Australia
- University of the Balearic IslandsPalmaIlles Balears07122Spain
| | - Duncan Fitzpatrick
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonAustralian Capital Territory2601Australia
| | - Robert T. Furbank
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonAustralian Capital Territory2601Australia
| | - Fikret Mamedov
- Molecular BiomimeticsDepartment of Chemistry – Ångström LaboratoryUppsala UniversityUppsala75 120Sweden
| | - Susanne von Caemmerer
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonAustralian Capital Territory2601Australia
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30
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Ma M, Liu Y, Bai C, Yong JWH. The Significance of Chloroplast NAD(P)H Dehydrogenase Complex and Its Dependent Cyclic Electron Transport in Photosynthesis. FRONTIERS IN PLANT SCIENCE 2021; 12:661863. [PMID: 33968117 PMCID: PMC8102782 DOI: 10.3389/fpls.2021.661863] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2021] [Accepted: 03/22/2021] [Indexed: 05/11/2023]
Abstract
Chloroplast NAD(P)H dehydrogenase (NDH) complex, a multiple-subunit complex in the thylakoid membranes mediating cyclic electron transport, is one of the most important alternative electron transport pathways. It was identified to be essential for plant growth and development during stress periods in recent years. The NDH-mediated cyclic electron transport can restore the over-reduction in stroma, maintaining the balance of the redox system in the electron transfer chain and providing the extra ATP needed for the other biochemical reactions. In this review, we discuss the research history and the subunit composition of NDH. Specifically, the formation and significance of NDH-mediated cyclic electron transport are discussed from the perspective of plant evolution and physiological functionality of NDH facilitating plants' adaptation to environmental stress. A better understanding of the NDH-mediated cyclic electron transport during photosynthesis may offer new approaches to improving crop yield.
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Affiliation(s)
- Mingzhu Ma
- College of Land and Environment, National Key Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Northeast China Plant Nutrition and Fertilization Scientific Observation and Research Center for Ministry of Agriculture and Rural Affairs, Key Laboratory of Protected Horticulture of Education Ministry and Liaoning Province, Shenyang Agricultural University, Shenyang, China
| | - Yifei Liu
- College of Land and Environment, National Key Engineering Laboratory for Efficient Utilization of Soil and Fertilizer Resources, Northeast China Plant Nutrition and Fertilization Scientific Observation and Research Center for Ministry of Agriculture and Rural Affairs, Key Laboratory of Protected Horticulture of Education Ministry and Liaoning Province, Shenyang Agricultural University, Shenyang, China
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia
- School of Biological Sciences, The University of Western Australia, Perth, WA, Australia
- School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia
| | - Chunming Bai
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia
- Liaoning Academy of Agricultural Sciences, Shenyang, China
| | - Jean Wan Hong Yong
- School of Biological Sciences, The University of Western Australia, Perth, WA, Australia
- Department of Biosystems and Technology, Swedish University of Agricultural Sciences, Alnarp, Sweden
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31
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Elevated Atmospheric CO 2 Concentration Improved C 4 Xero-Halophyte Kochia prostrata Physiological Performance under Saline Conditions. PLANTS 2021; 10:plants10030491. [PMID: 33807685 PMCID: PMC7998374 DOI: 10.3390/plants10030491] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Revised: 02/20/2021] [Accepted: 03/02/2021] [Indexed: 11/24/2022]
Abstract
A significant increase in atmospheric CO2 concentration and associated climate aridization and soil salinity are factors affecting the growth, development, productivity, and stress responses of plants. In this study, the effect of ambient (400 ppm) and elevated (800 ppm) CO2 concentrations were evaluated on the C4 xero-halophyte Kochia prostrata treated with moderate salinity (200 mM NaCl) and polyethylene glycol (PEG)-induced osmotic stress. Our results indicated that plants grown at elevated CO2 concentration had different responses to osmotic stress and salinity. The synergistic effect of elevated CO2 and osmotic stress increased proline accumulation, but elevated CO2 did not mitigate the negative effects of osmotic stress on dark respiration intensity and photosystem II (PSII) efficiency. This indicates a stressful state, which is accompanied by a decrease in the efficiency of light reactions of photosynthesis and significant dissipative respiratory losses, thereby resulting in growth inhibition. Plants grown at elevated CO2 concentration and salinity showed high Na+ and proline contents, high water-use efficiency and time required to reach the maximum P700 oxidation level (PSI), and low dark respiration. Maintaining stable water balance, the efficient functioning of cyclic transport of PSI, and the reduction of dissipation costs contributed to an increase in dry shoot biomass (2-fold, compared with salinity at 400 ppm CO2). The obtained experimental data and PCA showed that elevated CO2 concentration improved the physiological parameters of K. prostrata under salinity.
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32
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Ermakova M, Lopez-Calcagno PE, Raines CA, Furbank RT, von Caemmerer S. Overexpression of the Rieske FeS protein of the Cytochrome b6f complex increases C 4 photosynthesis in Setaria viridis. Commun Biol 2019; 2:314. [PMID: 31453378 PMCID: PMC6697696 DOI: 10.1038/s42003-019-0561-9] [Citation(s) in RCA: 71] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2019] [Accepted: 07/29/2019] [Indexed: 11/25/2022] Open
Abstract
C4 photosynthesis is characterised by a CO2 concentrating mechanism that operates between mesophyll and bundle sheath cells increasing CO2 partial pressure at the site of Rubisco and photosynthetic efficiency. Electron transport chains in both cell types supply ATP and NADPH for C4 photosynthesis. Cytochrome b6f is a key control point of electron transport in C3 plants. To study whether C4 photosynthesis is limited by electron transport we constitutively overexpressed the Rieske FeS subunit in Setaria viridis. This resulted in a higher Cytochrome b6f content in mesophyll and bundle sheath cells without marked changes in the abundances of other photosynthetic proteins. Rieske overexpression plants showed better light conversion efficiency in both Photosystems and could generate higher proton-motive force across the thylakoid membrane underpinning an increase in CO2 assimilation rate at ambient and saturating CO2 and high light. Our results demonstrate that removing electron transport limitations can increase C4 photosynthesis.
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Affiliation(s)
- Maria Ermakova
- Australian Research Council Centre of Excellence for Translational Photosynthesis, Division of Plant Science, Research School of Biology, The Australian National University, Acton, Australian Capital Territory 2601 Australia
| | | | - Christine A. Raines
- School of Biological Sciences, University of Essex, Wivenhoe Park, Colchester, CO4 3SQ UK
| | - Robert T. Furbank
- Australian Research Council Centre of Excellence for Translational Photosynthesis, Division of Plant Science, Research School of Biology, The Australian National University, Acton, Australian Capital Territory 2601 Australia
| | - Susanne von Caemmerer
- Australian Research Council Centre of Excellence for Translational Photosynthesis, Division of Plant Science, Research School of Biology, The Australian National University, Acton, Australian Capital Territory 2601 Australia
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33
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Nikkanen L, Rintamäki E. Chloroplast thioredoxin systems dynamically regulate photosynthesis in plants. Biochem J 2019; 476:1159-1172. [PMID: 30988137 PMCID: PMC6463390 DOI: 10.1042/bcj20180707] [Citation(s) in RCA: 60] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Revised: 03/28/2019] [Accepted: 03/29/2019] [Indexed: 12/18/2022]
Abstract
Photosynthesis is a highly regulated process in photoautotrophic cells. The main goal of the regulation is to keep the basic photosynthetic reactions, i.e. capturing light energy, conversion into chemical energy and production of carbohydrates, in balance. The rationale behind the evolution of strong regulation mechanisms is to keep photosynthesis functional under all conditions encountered by sessile plants during their lifetimes. The regulatory mechanisms may, however, also impair photosynthetic efficiency by overriding the photosynthetic reactions in controlled environments like crop fields or bioreactors, where light energy could be used for production of sugars instead of dissipation as heat and down-regulation of carbon fixation. The plant chloroplast has a high number of regulatory proteins called thioredoxins (TRX), which control the function of chloroplasts from biogenesis and assembly of chloroplast machinery to light and carbon fixation reactions as well as photoprotective mechanisms. Here, we review the current knowledge of regulation of photosynthesis by chloroplast TRXs and assess the prospect of improving plant photosynthetic efficiency by modification of chloroplast thioredoxin systems.
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Affiliation(s)
- Lauri Nikkanen
- Molecular Plant Biology, Department of Biochemistry, University of Turku, FI-20014 Turku, Finland
| | - Eevi Rintamäki
- Molecular Plant Biology, Department of Biochemistry, University of Turku, FI-20014 Turku, Finland
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Arrivault S, Alexandre Moraes T, Obata T, Medeiros DB, Fernie AR, Boulouis A, Ludwig M, Lunn JE, Borghi GL, Schlereth A, Guenther M, Stitt M. Metabolite profiles reveal interspecific variation in operation of the Calvin-Benson cycle in both C4 and C3 plants. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:1843-1858. [PMID: 30773587 PMCID: PMC6436152 DOI: 10.1093/jxb/erz051] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2018] [Accepted: 01/29/2019] [Indexed: 05/18/2023]
Abstract
Low atmospheric CO2 in recent geological time led to the evolution of carbon-concentrating mechanisms (CCMs) such as C4 photosynthesis in >65 terrestrial plant lineages. We know little about the impact of low CO2 on the Calvin-Benson cycle (CBC) in C3 species that did not evolve CCMs, representing >90% of terrestrial plant species. Metabolite profiling provides a top-down strategy to investigate the operational balance in a pathway. We profiled CBC intermediates in a panel of C4 (Zea mays, Setaria viridis, Flaveria bidentis, and F. trinervia) and C3 species (Oryza sativa, Triticium aestivum, Arabidopsis thaliana, Nicotiana tabacum, and Manihot esculenta). Principal component analysis revealed differences between C4 and C3 species that were driven by many metabolites, including lower ribulose 1,5-bisphosphate in C4 species. Strikingly, there was also considerable variation between C3 species. This was partly due to different chlorophyll and protein contents, but mainly to differences in relative levels of metabolites. Correlation analysis indicated that one contributory factor was the balance between fructose-1,6-bisphosphatase, sedoheptulose-1,7-bisphosphatase, phosphoribulokinase, and Rubisco. Our results point to the CBC having experienced different evolutionary trajectories in C3 species since the ancestors of modern plant lineages diverged. They underline the need to understand CBC operation in a wide range of species.
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Affiliation(s)
- Stéphanie Arrivault
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
| | | | - Toshihiro Obata
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
- Present address: Department of Biochemistry, Center for Plant Science Innovation, University of Nebraska-Lincoln, 1901 Vine Str, Lincoln, NE 68588, USA
| | - David B Medeiros
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
| | - Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
| | - Alix Boulouis
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
- Present address: Institut de Biologie Physico-Chimique, CNRS - Sorbonne Université, Paris, France
| | - Martha Ludwig
- School of Molecular Sciences, The University of Western Australia, Crawley WA, Australia
| | - John E Lunn
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
| | - Gian Luca Borghi
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
| | - Armin Schlereth
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
| | - Manuela Guenther
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
| | - Mark Stitt
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
- Correspondence:
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Ermakova M, Lopez-Calcagno PE, Raines CA, Furbank RT, von Caemmerer S. Overexpression of the Rieske FeS protein of the Cytochrome b6f complex increases C 4 photosynthesis in Setaria viridis. Commun Biol 2019. [PMID: 31453378 DOI: 10.1038/s42003-019-0561-569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/17/2023] Open
Abstract
C4 photosynthesis is characterised by a CO2 concentrating mechanism that operates between mesophyll and bundle sheath cells increasing CO2 partial pressure at the site of Rubisco and photosynthetic efficiency. Electron transport chains in both cell types supply ATP and NADPH for C4 photosynthesis. Cytochrome b6f is a key control point of electron transport in C3 plants. To study whether C4 photosynthesis is limited by electron transport we constitutively overexpressed the Rieske FeS subunit in Setaria viridis. This resulted in a higher Cytochrome b6f content in mesophyll and bundle sheath cells without marked changes in the abundances of other photosynthetic proteins. Rieske overexpression plants showed better light conversion efficiency in both Photosystems and could generate higher proton-motive force across the thylakoid membrane underpinning an increase in CO2 assimilation rate at ambient and saturating CO2 and high light. Our results demonstrate that removing electron transport limitations can increase C4 photosynthesis.
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Affiliation(s)
- Maria Ermakova
- 1Australian Research Council Centre of Excellence for Translational Photosynthesis, Division of Plant Science, Research School of Biology, The Australian National University, Acton, Australian Capital Territory 2601 Australia
| | | | - Christine A Raines
- 2School of Biological Sciences, University of Essex, Wivenhoe Park, Colchester, CO4 3SQ UK
| | - Robert T Furbank
- 1Australian Research Council Centre of Excellence for Translational Photosynthesis, Division of Plant Science, Research School of Biology, The Australian National University, Acton, Australian Capital Territory 2601 Australia
| | - Susanne von Caemmerer
- 1Australian Research Council Centre of Excellence for Translational Photosynthesis, Division of Plant Science, Research School of Biology, The Australian National University, Acton, Australian Capital Territory 2601 Australia
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Yin X, Struik PC. The energy budget in C 4 photosynthesis: insights from a cell-type-specific electron transport model. THE NEW PHYTOLOGIST 2018; 218:986-998. [PMID: 29520959 PMCID: PMC5947737 DOI: 10.1111/nph.15051] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2017] [Accepted: 01/16/2018] [Indexed: 05/18/2023]
Abstract
Extra ATP required in C4 photosynthesis for the CO2 -concentrating mechanism probably comes from cyclic electron transport (CET). As metabolic ATP : NADPH requirements in mesophyll (M) and bundle-sheath (BS) cells differ among C4 subtypes, the subtypes may differ in the extent to which CET operates in these cells. We present an analytical model for cell-type-specific CET and linear electron transport. Modelled NADPH and ATP production were compared with requirements. For malic-enzyme (ME) subtypes, c. 50% of electron flux is CET, occurring predominantly in BS cells for standard NADP-ME species, but in a ratio of c. 6 : 4 in BS : M cells for NAD-ME species. Some C4 acids follow a secondary decarboxylation route, which is obligatory, in the form of 'aspartate-malate', for the NADP-ME subtype, but facultative, in the form of phosphoenolpyruvate-carboxykinase (PEP-CK), for the NAD-ME subtype. The percentage for secondary decarboxylation is c. 25% and that for 3-phosphoglycerate reduction in BS cells is c. 40%; but these values vary with species. The 'pure' PEP-CK type is unrealistic because its is impossible to fulfil ATP : NADPH requirements in BS cells. The standard PEP-CK subtype requires negligible CET, and thus has the highest intrinsic quantum yields and deserves further studies in the context of improving canopy productivity.
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Affiliation(s)
- Xinyou Yin
- Department of Plant SciencesCentre for Crop Systems AnalysisWageningen University & ResearchPO Box 4306700 AKWageningenthe Netherlands
| | - Paul C. Struik
- Department of Plant SciencesCentre for Crop Systems AnalysisWageningen University & ResearchPO Box 4306700 AKWageningenthe Netherlands
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Alric J, Johnson X. Alternative electron transport pathways in photosynthesis: a confluence of regulation. CURRENT OPINION IN PLANT BIOLOGY 2017; 37:78-86. [PMID: 28426976 DOI: 10.1016/j.pbi.2017.03.014] [Citation(s) in RCA: 69] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2017] [Revised: 03/23/2017] [Accepted: 03/28/2017] [Indexed: 05/19/2023]
Abstract
Photosynthetic reactions proceed along a linear electron transfer chain linking water oxidation at photosystem II (PSII) to CO2 reduction in the Calvin-Benson-Bassham cycle. Alternative pathways poise the electron carriers along the chain in response to changing light, temperature and CO2 inputs, under prolonged hydration stress and during development. We describe recent literature that reports the physiological functions of new molecular players. Such highlights include the flavodiiron proteins and their important role in the green lineage. The parsing of the proton-motive force between ΔpH and Δψ, regulated in many different ways (cyclic electron flow, ATPsynthase conductivity, ion/H+ transporters), is comprehensively reported. This review focuses on an integrated description of alternative electron transfer pathways and how they contribute to photosynthetic productivity in the context of plant fitness to the environment.
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Affiliation(s)
- Jean Alric
- CEA, CNRS, Aix-Marseille Université, Institut de Biosciences et Biotechnologies Aix-Marseille, UMR 7265, Laboratoire de Bioénergétique et Biotechnologie des Bactéries et Microalgues, CEA Cadarache, Saint-Paul-lez-Durance F-13108, France
| | - Xenie Johnson
- CEA, CNRS, Aix-Marseille Université, Institut de Biosciences et Biotechnologies Aix-Marseille, UMR 7265, Laboratoire de Bioénergétique et Biotechnologie des Bactéries et Microalgues, CEA Cadarache, Saint-Paul-lez-Durance F-13108, France.
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Yin X, Struik PC. Can increased leaf photosynthesis be converted into higher crop mass production? A simulation study for rice using the crop model GECROS. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:2345-2360. [PMID: 28379522 PMCID: PMC5447886 DOI: 10.1093/jxb/erx085] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Various genetic engineering routes to enhance C3 leaf photosynthesis have been proposed to improve crop productivity. However, their potential contribution to crop productivity needs to be assessed under realistic field conditions. Using 31 year weather data, we ran the crop model GECROS for rice in tropical, subtropical, and temperate environments, to evaluate the following routes: (1) improving mesophyll conductance (gm); (2) improving Rubisco specificity (Sc/o); (3) improving both gm and Sc/o; (4) introducing C4 biochemistry; (5) introducing C4 Kranz anatomy that effectively minimizes CO2 leakage; (6) engineering the complete C4 mechanism; (7) engineering cyanobacterial bicarbonate transporters; (8) engineering a more elaborate cyanobacterial CO2-concentrating mechanism (CCM) with the carboxysome in the chloroplast; and (9) a mechanism that combines the low ATP cost of the cyanobacterial CCM and the high photosynthetic capacity per unit leaf nitrogen. All routes improved crop mass production, but benefits from Routes 1, 2, and 7 were ≤10%. Benefits were higher in the presence than in the absence of drought, and under the present climate than for the climate predicted for 2050. Simulated crop mass differences resulted not only from the increased canopy photosynthesis competence but also from changes in traits such as light interception and crop senescence. The route combinations gave larger effects than the sum of the effects of the single routes, but only Route 9 could bring an advantage of ≥50% under any environmental conditions. To supercharge crop productivity, exploring a combination of routes in improving the CCM, photosynthetic capacity, and quantum efficiency is required.
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Affiliation(s)
- Xinyou Yin
- Centre for Crop Systems Analysis, Department of Plant Sciences, Wageningen University & Research, PO Box 430, 6700 AK Wageningen, The Netherlands
| | - Paul C Struik
- Centre for Crop Systems Analysis, Department of Plant Sciences, Wageningen University & Research, PO Box 430, 6700 AK Wageningen, The Netherlands
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Fankhauser N, Aubry S. Post-transcriptional regulation of photosynthetic genes is a key driver of C4 leaf ontogeny. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:137-146. [PMID: 27756806 PMCID: PMC5853474 DOI: 10.1093/jxb/erw386] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
C4 photosynthesis allows highly efficient carbon fixation that originates from tightly regulated anatomical and biochemical modifications of leaf architecture. Recent studies showed that leaf transcriptome modifications during leaf ontogeny of closely related C3 (Tarenaya hassleriana) and C4 (Gynandropsis gynandra) species within the Cleomaceae family existed but they did not identify any dedicated transcriptional networks or factors specifically driving C4 leaf ontogeny. RNAseq analysis provides a steady-state quantification of whole-cell mRNAs but does not allow any discrimination between transcriptional and post-transcriptional processes that may occur simultaneously during leaf ontogeny. Here we use exon-intron split analysis (EISA) to determine the extent to which transcriptional and post-transcriptional processes are involved in the regulation of gene expression between young and expanded leaves in both species. C4-specific changes in post-transcriptional regulation were observed for genes involved in the Calvin-Benson cycle and some photosystem components but not for C4 core-cycle genes. Overall, this study provides an unbiased genome-wide insight into the post-transcriptional mechanisms that regulate gene expression through the control of mRNA levels and could be central to the onset of C4 photosynthesis. This mechanism is cytosolic which implies cell-specific modifications of mRNA stability. Understanding this mechanism may be crucial when aiming to transform C3 crops into C4 crops.
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Affiliation(s)
- Nicklaus Fankhauser
- Clinical Trials Unit, University of Bern, Finkenhubelweg 11, 3012 Bern, Switzerland
| | - Sylvain Aubry
- Institute of Plant and Microbial Biology, University of Zürich, Zollikerstrasse 107, 8008 Zürich, Switzerland
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40
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Wang S, Tholen D, Zhu X. C 4 photosynthesis in C 3 rice: a theoretical analysis of biochemical and anatomical factors. PLANT, CELL & ENVIRONMENT 2017; 40:80-94. [PMID: 27628301 PMCID: PMC6139432 DOI: 10.1111/pce.12834] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2016] [Revised: 09/08/2016] [Accepted: 09/10/2016] [Indexed: 05/05/2023]
Abstract
Engineering C4 photosynthesis into rice has been considered a promising strategy to increase photosynthesis and yield. A question that remains to be answered is whether expressing a C4 metabolic cycle into a C3 leaf structure and without removing the C3 background metabolism improves photosynthetic efficiency. To explore this question, we developed a 3D reaction diffusion model of bundle-sheath and connected mesophyll cells in a C3 rice leaf. Our results show that integrating a C4 metabolic pathway into rice leaves with a C3 metabolism and mesophyll structure may lead to an improved photosynthesis under current ambient CO2 concentration. We analysed a number of physiological factors that influence the CO2 uptake rate, which include the chloroplast surface area exposed to intercellular air space, bundle-sheath cell wall thickness, bundle-sheath chloroplast envelope permeability, Rubisco concentration and the energy partitioning between C3 and C4 cycles. Among these, partitioning of energy between C3 and C4 photosynthesis and the partitioning of Rubisco between mesophyll and bundle-sheath cells are decisive factors controlling photosynthetic efficiency in an engineered C3 -C4 leaf. The implications of the results for the sequence of C4 evolution are also discussed.
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Affiliation(s)
- Shuyue Wang
- Key Laboratory of Computational Biology, CAS‐MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological SciencesChinese Academy of SciencesShanghai200031China
- University of Chinese Academy of SciencesBeijing100049China
| | - Danny Tholen
- Institute of Botany, Department of Integrative BiologyUniversity of Natural Resources and Applied Life Sciences, BOKU ViennaGregor‐Mendel‐Str. 33A‐1180ViennaAustria
| | - Xin‐Guang Zhu
- Key Laboratory of Computational Biology, CAS‐MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological SciencesChinese Academy of SciencesShanghai200031China
- University of Chinese Academy of SciencesBeijing100049China
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Ishikawa N, Takabayashi A, Noguchi K, Tazoe Y, Yamamoto H, von Caemmerer S, Sato F, Endo T. NDH-Mediated Cyclic Electron Flow Around Photosystem I is Crucial for C4 Photosynthesis. PLANT & CELL PHYSIOLOGY 2016; 57:2020-2028. [PMID: 27497446 DOI: 10.1093/pcp/pcw127] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2016] [Accepted: 07/12/2016] [Indexed: 05/23/2023]
Abstract
C4 photosynthesis exhibits efficient CO2 assimilation in ambient air by concentrating CO2 around ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco) through a metabolic pathway called the C4 cycle. It has been suggested that cyclic electron flow (CEF) around PSI mediated by chloroplast NADH dehydrogenase-like complex (NDH), an alternative pathway of photosynthetic electron transport (PET), plays a crucial role in C4 photosynthesis, although the contribution of NDH-mediated CEF is small in C3 photosynthesis. Here, we generated NDH-suppressed transformants of a C4 plant, Flaveria bidentis, and showed that the NDH-suppressed plants grow poorly, especially under low-light conditions. CO2 assimilation rates were consistently decreased in the NDH-suppressed plants under low and medium light intensities. Measurements of non-photochemical quenching (NPQ) of Chl fluorescence, the oxidation state of the reaction center of PSI (P700) and the electrochromic shift (ECS) of pigment absorbance indicated that proton translocation across the thylakoid membrane is impaired in the NDH-suppressed plants. Since proton translocation across the thylakoid membrane induces ATP production, these results suggest that NDH-mediated CEF plays a role in the supply of ATP which is required for C4 photosynthesis. Such a role is more crucial when the light that is available for photosynthesis is limited and the energy production by PET becomes rate-determining for C4 photosynthesis. Our results demonstrate that the physiological contribution of NDH-mediated CEF is greater in C4 photosynthesis than in C3 photosynthesis, suggesting that the mechanism of PET in C4 photosynthesis has changed from that in C3 photosynthesis accompanying the changes in the mechanism of CO2 assimilation.
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Affiliation(s)
- Noriko Ishikawa
- Graduate School of Biostudies, Kyoto University, Kitashirakawa-Oiwakecho, Sakyoku, Kyoto, 606-8502 Japan
| | - Atsushi Takabayashi
- Graduate School of Biostudies, Kyoto University, Kitashirakawa-Oiwakecho, Sakyoku, Kyoto, 606-8502 Japan
- Present address: Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, 060-0819 Japan
| | - Ko Noguchi
- School of Life Sciences, Tokyo University of Pharmacy and Life Sciences, 1432-1 Horinouchi, Hachioji, Tokyo, 192-0392 Japan
| | - Youshi Tazoe
- Graduate School of Biostudies, Kyoto University, Kitashirakawa-Oiwakecho, Sakyoku, Kyoto, 606-8502 Japan
- Present address: Graduate School of Agricultural Science, Tohoku University, 1-1, Amamiya-machi, Tsutsumidori, Aoba-ku, Sendai, 981-8555 Japan
| | - Hiroshi Yamamoto
- Department of Botany, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyoku, Kyoto, 606-8502 Japan
| | - Susanne von Caemmerer
- Research School of Biology, The Australian National University, Canberra, ACT, 0200, Australia
| | - Fumihiko Sato
- Graduate School of Biostudies, Kyoto University, Kitashirakawa-Oiwakecho, Sakyoku, Kyoto, 606-8502 Japan
| | - Tsuyoshi Endo
- Graduate School of Biostudies, Kyoto University, Kitashirakawa-Oiwakecho, Sakyoku, Kyoto, 606-8502 Japan
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Bellasio C, Lundgren MR. Anatomical constraints to C4 evolution: light harvesting capacity in the bundle sheath. THE NEW PHYTOLOGIST 2016; 212:485-496. [PMID: 27375085 DOI: 10.1111/nph.14063] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2016] [Accepted: 05/10/2016] [Indexed: 06/06/2023]
Abstract
In C4 photosynthesis CO2 assimilation and reduction are typically coordinated across mesophyll (M) and bundle sheath (BS) cells, respectively. This system consequently requires sufficient light to reach BS to generate enough ATP to allow ribulose-1,5-bisphosphate (RuBP) regeneration in BS. Leaf anatomy influences BS light penetration and therefore constrains C4 cycle functionality. Using an absorption scattering model (coded in Excel, and freely downloadable) we simulate light penetration profiles and rates of ATP production in BS across the C3 , C3 -C4 and C4 anatomical continua. We present a trade-off for light absorption between BS pigment concentration and space allocation. C3 BS anatomy limits light absorption and benefits little from high pigment concentrations. Unpigmented BS extensions increase BS light penetration. C4 and C3 -C4 anatomies have the potential to generate sufficient ATP in the BS, whereas typical C3 anatomy does not, except some C3 taxa closely related to C4 groups. Insufficient volume of BS, relative to M, will hamper a C4 cycle via insufficient BS light absorption. Thus, BS ATP production and RuBP regeneration, coupled with increased BS investments, allow greater operational plasticity. We propose that larger BS in C3 lineages may be co-opted for C3 -C4 and C4 biochemistry requirements.
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Affiliation(s)
- Chandra Bellasio
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK.
| | - Marjorie R Lundgren
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK
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Fan DY, Fitzpatrick D, Oguchi R, Ma W, Kou J, Chow WS. Obstacles in the quantification of the cyclic electron flux around Photosystem I in leaves of C3 plants. PHOTOSYNTHESIS RESEARCH 2016; 129:239-51. [PMID: 26846653 DOI: 10.1007/s11120-016-0223-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2015] [Accepted: 01/24/2016] [Indexed: 05/20/2023]
Abstract
Sixty years ago Arnon and co-workers discovered photophosphorylation driven by a cyclic electron flux (CEF) around Photosystem I. Since then understanding the physiological roles and the regulation of CEF has progressed, mainly via genetic approaches. One basic problem remains, however: quantifying CEF in the absence of a net product. Quantification of CEF under physiological conditions is a crucial prerequisite for investigating the physiological roles of CEF. Here we summarize current progress in methods of CEF quantification in leaves and, in some cases, in isolated thylakoids, of C3 plants. Evidently, all present methods have their own shortcomings. We conclude that to quantify CEF in vivo, the best way currently is to measure the electron flux through PS I (ETR1) and that through PS II and PS I in series (ETR2) for the whole leaf tissue under identical conditions. The difference between ETR1 and ETR2 is an upper estimate of CEF, mainly consisting, in C3 plants, of a major PGR5-PGRL1-dependent CEF component and a minor chloroplast NDH-dependent component, where PGR5 stands for Proton Gradient Regulation 5 protein, PGRL1 for PGR5-like photosynthesis phenotype 1, and NDH for Chloroplast NADH dehydrogenase-like complex. These two CEF components can be separated by the use of antimycin A to inhibit the former (major) component. Membrane inlet mass spectrometry utilizing stable oxygen isotopes provides a reliable estimation of ETR2, whilst ETR1 can be estimated from a method based on the photochemical yield of PS I, Y(I). However, some issues for the recommended method remain unresolved.
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Affiliation(s)
- Da-Yong Fan
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, The Chinese Academy of Sciences, Beijing, 100093, China
- Division of Plant Sciences, Research School of Biology, The Australian National University, 46 Sullivans Creek Road, Acton, ACT, 2601, Australia
| | - Duncan Fitzpatrick
- Division of Plant Sciences, Research School of Biology, The Australian National University, 46 Sullivans Creek Road, Acton, ACT, 2601, Australia
| | - Riichi Oguchi
- Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi, 980-8578, Japan
- Division of Plant Sciences, Research School of Biology, The Australian National University, 46 Sullivans Creek Road, Acton, ACT, 2601, Australia
| | - Weimin Ma
- College of Life & Environment Sciences, Shanghai Normal University, Guilin Road 100, Shanghai, 200234, China
- Division of Plant Sciences, Research School of Biology, The Australian National University, 46 Sullivans Creek Road, Acton, ACT, 2601, Australia
| | - Jiancun Kou
- College of Animal Science and Technology, Northwest A&F University, Yangling, 712100, China
- Division of Plant Sciences, Research School of Biology, The Australian National University, 46 Sullivans Creek Road, Acton, ACT, 2601, Australia
| | - Wah Soon Chow
- Division of Plant Sciences, Research School of Biology, The Australian National University, 46 Sullivans Creek Road, Acton, ACT, 2601, Australia.
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Ishikawa N, Takabayashi A, Sato F, Endo T. Accumulation of the components of cyclic electron flow around photosystem I in C4 plants, with respect to the requirements for ATP. PHOTOSYNTHESIS RESEARCH 2016; 129:261-77. [PMID: 27017612 DOI: 10.1007/s11120-016-0251-0] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2015] [Accepted: 03/21/2016] [Indexed: 05/11/2023]
Abstract
By concentrating CO2, C4 photosynthesis can suppress photorespiration and achieve high photosynthetic efficiency, especially under conditions of high light, high temperature, and drought. To concentrate CO2, extra ATP is required, which would also require a change in photosynthetic electron transport in C4 photosynthesis from that in C3 photosynthesis. Several analyses have shown that the accumulation of the components of cyclic electron flow (CEF) around photosystem I, which generates the proton gradient across thylakoid membranes (ΔpH) and functions in ATP production without producing NADPH, is increased in various NAD-malic enzyme and NADP-malic enzyme C4 plants, suggesting that CEF may be enhanced to satisfy the increased need for ATP in C4 photosynthesis. However, in C4 plants, the accumulation patterns of the components of two partially redundant pathways of CEF, NAD(P)H dehydrogenase-like complex and PROTON GRADIENT REGULATION5-PGR5-like1 complex, are not identical, suggesting that these pathways may play different roles in C4 photosynthesis. Accompanying the increase in the amount of NDH, the expression of some genes which encode proteins involved in the assembly of NDH is also increased at the mRNA level in various C4 plants, suggesting that this increase is needed to increase the accumulation of NDH. To better understand the relation between CEF and C4 photosynthesis, a reverse genetic approach to generate C4 transformants with respect to CEF will be necessary.
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Affiliation(s)
- Noriko Ishikawa
- Graduate School of Biostudies, Kyoto University, Kitashirakawa, Sakyoku, Kyoto, 606-8502, Japan
| | - Atsushi Takabayashi
- Graduate School of Biostudies, Kyoto University, Kitashirakawa, Sakyoku, Kyoto, 606-8502, Japan
- Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, 060-0819, Japan
| | - Fumihiko Sato
- Graduate School of Biostudies, Kyoto University, Kitashirakawa, Sakyoku, Kyoto, 606-8502, Japan
| | - Tsuyoshi Endo
- Graduate School of Biostudies, Kyoto University, Kitashirakawa, Sakyoku, Kyoto, 606-8502, Japan.
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Wang P, Vlad D, Langdale JA. Finding the genes to build C4 rice. CURRENT OPINION IN PLANT BIOLOGY 2016; 31:44-50. [PMID: 27055266 DOI: 10.1016/j.pbi.2016.03.012] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2015] [Revised: 03/10/2016] [Accepted: 03/16/2016] [Indexed: 06/05/2023]
Abstract
Rice, a C3 crop, is a staple food for more than half of the world's population, with most consumers living in developing countries. Engineering C4 photosynthetic traits into rice is increasingly suggested as a way to meet the 50% yield increase that is predicted to be needed by 2050. Advances in genome-wide deep-sequencing, gene discovery and genome editing platforms have brought the possibility of engineering a C3 to C4 conversion closer than ever before. Because C4 plants have evolved independently multiple times from C3 origins, it is probably that key genes and gene regulatory networks that regulate C4 were recruited from C3 ancestors. In the past five years there have been over 20 comparative transcriptomic studies published that aimed to identify these recruited C4 genes and regulatory mechanisms. Here we present an overview of what we have learned so far and preview the efforts still needed to provide a practical blueprint for building C4 rice.
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Affiliation(s)
- Peng Wang
- Department of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, UK.
| | - Daniela Vlad
- Department of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, UK
| | - Jane A Langdale
- Department of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, UK
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Nakajima Munekage Y. Light harvesting and chloroplast electron transport in NADP-malic enzyme type C4 plants. CURRENT OPINION IN PLANT BIOLOGY 2016; 31:9-15. [PMID: 26999307 DOI: 10.1016/j.pbi.2016.03.001] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2015] [Revised: 02/17/2016] [Accepted: 03/01/2016] [Indexed: 06/05/2023]
Abstract
The structure of thylakoids in chloroplasts and the organization of the electron transport chain changed dynamically during the evolution of C4 photosynthesis, especially in the nicotinamide adenine dinucleotide phosphate (NADP)-malic enzyme type C4 species. Stacked grana membranes are strongly reduced in the bundle sheath chloroplasts of these plants, where photosystem II activity is diminished and cyclic electron transport around photosystem I mainly occurs. This change optimizes the ATP/NADPH production ratio in bundle sheath chloroplasts to drive the metabolic cycle of C4 photosynthesis. This review summarizes the current model of light harvesting and electron transport in the NADP-malic enzyme type C4 plants and discusses how it changed during the evolution of C4 photosynthesis.
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Affiliation(s)
- Yuri Nakajima Munekage
- Department of Bioscience, School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan.
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Munekage YN, Taniguchi YY. Promotion of Cyclic Electron Transport Around Photosystem I with the Development of C4 Photosynthesis. PLANT & CELL PHYSIOLOGY 2016; 57:897-903. [PMID: 26893472 DOI: 10.1093/pcp/pcw012] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2015] [Accepted: 01/11/2016] [Indexed: 06/05/2023]
Abstract
C4 photosynthesis is present in approximately 7,500 species classified into 19 families, including monocots and eudicots. In the majority of documented cases, a two-celled CO2-concentrating system that uses a metabolic cycle of four-carbon compounds is employed. C4 photosynthesis repeatedly evolved from C3 photosynthesis, possibly driven by the survival advantages it bestows in the hot, often dry, and nutrient-poor soils of the tropics and subtropics. The development of the C4 metabolic cycle greatly increased the ATP demand in chloroplasts during the evolution of malic enzyme-type C4 photosynthesis, and the additional ATP required for C4 metabolism may be produced by the cyclic electron transport around PSI. Recent studies have revealed the nature of cyclic electron transport and the elevation of its components during C4 evolution. In this review, we discuss the energy requirements of C3 and C4 photosynthesis, the current model of cyclic electron transport around PSI and how cyclic electron transport is promoted during C4 evolution using studies on the genus Flaveria, which contains a number of closely related C3, C4 and C3-C4 intermediate species.
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Affiliation(s)
- Yuri Nakajima Munekage
- School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo, 669-1337 Japan
| | - Yukimi Y Taniguchi
- School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo, 669-1337 Japan
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Tao Y, Lyu MJA, Zhu XG. Transcriptome comparisons shed light on the pre-condition and potential barrier for C4 photosynthesis evolution in eudicots. PLANT MOLECULAR BIOLOGY 2016; 91:193-209. [PMID: 26893123 DOI: 10.1007/s11103-016-0455-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2015] [Accepted: 02/14/2016] [Indexed: 06/05/2023]
Abstract
C4 photosynthesis evolved independently from C3 photosynthesis in more than 60 lineages. Most of the C4 lineages are clustered together in the order Poales and the order Caryophyllales while many other angiosperm orders do not have C4 species, suggesting the existence of biological pre-conditions in the ancestral C3 species that facilitate the evolution of C4 photosynthesis in these lineages. To explore pre-adaptations for C4 photosynthesis evolution, we classified C4 lineages into the C4-poor and the C4-rich groups based on the percentage of C4 species in different genera and conducted a comprehensive comparison on the transcriptomic changes between the non-C4 species from the C4-poor and the C4-rich groups. Results show that species in the C4-rich group showed higher expression of genes related to oxidoreductase activity, light reaction components, terpene synthesis, secondary cell synthesis, C4 cycle related genes and genes related to nucleotide metabolism and senescence. In contrast, C4-poor group showed up-regulation of a PEP/Pi translocator, genes related to signaling pathway, stress response, defense response and plant hormone metabolism (ethylene and brassinosteroid). The implications of these transcriptomic differences between the C4-rich and C4-poor groups to C4 evolution are discussed.
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Affiliation(s)
- Yimin Tao
- CAS-Key Laboratory for Computational Biology and State Key Laboratory for Hybrid Rice, Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Ming-Ju Amy Lyu
- CAS-Key Laboratory for Computational Biology and State Key Laboratory for Hybrid Rice, Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Xin-Guang Zhu
- CAS-Key Laboratory for Computational Biology and State Key Laboratory for Hybrid Rice, Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China.
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Yamori W, Shikanai T. Physiological Functions of Cyclic Electron Transport Around Photosystem I in Sustaining Photosynthesis and Plant Growth. ANNUAL REVIEW OF PLANT BIOLOGY 2016; 67:81-106. [PMID: 26927905 DOI: 10.1146/annurev-arplant-043015-112002] [Citation(s) in RCA: 294] [Impact Index Per Article: 36.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
The light reactions in photosynthesis drive both linear and cyclic electron transport around photosystem I (PSI). Linear electron transport generates both ATP and NADPH, whereas PSI cyclic electron transport produces ATP without producing NADPH. PSI cyclic electron transport is thought to be essential for balancing the ATP/NADPH production ratio and for protecting both photosystems from damage caused by stromal overreduction. Two distinct pathways of cyclic electron transport have been proposed in angiosperms: a major pathway that depends on the PROTON GRADIENT REGULATION 5 (PGR5) and PGR5-LIKE PHOTOSYNTHETIC PHENOTYPE 1 (PGRL1) proteins, which are the target site of antimycin A, and a minor pathway mediated by the chloroplast NADH dehydrogenase-like (NDH) complex. Recently, the regulation of PSI cyclic electron transport has been recognized as essential for photosynthesis and plant growth. In this review, we summarize the possible functions and importance of the two pathways of PSI cyclic electron transport.
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Affiliation(s)
- Wataru Yamori
- Department of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo 113-0033, Japan;
- Precursory Research for Embryonic Science and Technology (PRESTO) and
| | - Toshiharu Shikanai
- Core Research for Evolutionary Science and Technology (CREST), Japan Science and Technology Agency, Kawaguchi 332-0012, Japan
- Department of Botany, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
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Essemine J, Qu M, Mi H, Zhu XG. Response of Chloroplast NAD(P)H Dehydrogenase-Mediated Cyclic Electron Flow to a Shortage or Lack in Ferredoxin-Quinone Oxidoreductase-Dependent Pathway in Rice Following Short-Term Heat Stress. FRONTIERS IN PLANT SCIENCE 2016; 7:383. [PMID: 27066033 PMCID: PMC4811871 DOI: 10.3389/fpls.2016.00383] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2016] [Accepted: 03/13/2016] [Indexed: 05/07/2023]
Abstract
Cyclic electron flow (CEF) around photosystem I (PSI) can protect photosynthetic electron carriers under conditions of stromal over-reduction. The goal of the research reported in this paper was to investigate the responses of both PSI and photosystem II (PSII) to a short-term heat stress in two rice lines with different capacities of cyclic electron transfer, i.e., Q4149 with a high capacity (hcef) and C4023 with a low capacity (lcef). The absorbance change at 820 nm (ΔA820) was used here to assess the charge separation in the PSI reaction center (P700). The results obtained show that short-term heat stress abolishes the ferredoxin-quinone oxidoreductase (FQR)-dependent CEF in rice and accelerates the initial rate of P700 (+) re-reduction. The P700 (+) amplitude was slightly increased at a moderate heat-stress (35°C) because of a partial restriction of FQR but it was decreased following high heat-stress (42°C). Assessment of PSI and PSII activities shows that PSI is more susceptible to heat stress than PSII. Under high temperature, FQR-dependent CEF was completely removed and NDH-dependent CEF was up-regulated and strengthened to a higher extent in C4023 than in Q4149. Specifically, under normal growth temperature, hcef (Q4149) was characterized by higher FQR- and chloroplast NAD(P)H dehydrogenase (NDH)-dependent CEF rates than lcef (C4023). Following thermal stress, the activation of NDH-pathway was 130 and 10% for C4023 and Q4149, respectively. Thus, the NDH-dependent CEF may constitute the second layer of plant protection and defense against heat stress after the main route, i.e., FQR-dependent CEF, reaches its capacity. We discuss the possibility that under high heat stress, the NDH pathway serves as a safety valve to dissipate excess energy by cyclic photophosphorylation and overcome the stroma over-reduction following inhibition of CO2 assimilation and any shortage or lack in the FQR pathway. The potential role of the NDH-dependent pathway during the evolution of C4 photosynthesis is briefly discussed.
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Affiliation(s)
- Jemaa Essemine
- CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Chinese Academy of SciencesShanghai, China
| | - Mingnan Qu
- CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Chinese Academy of SciencesShanghai, China
| | - Hualing Mi
- National Key Laboratory of Plant Molecular Genetics, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of SciencesShanghai, China
| | - Xin-Guang Zhu
- CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Chinese Academy of SciencesShanghai, China
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