Altered plant carbon partitioning enhanced forest ecosystem carbon storage after 25 years of nitrogen additions

Evidence and causes of recent decreases in nitrogen deposition in temperate forests in Northeast China

High reactive nitrogen (N) emissions due to anthropogenic activities in China have led to an increase in N deposition and ecosystem degradation. The Chinese government has strictly regulated reactive N emissions since 2010, however, determining whether N deposition has reduced requires long-term monitoring. Here, we report the patterns of N deposition at a rural forest site (Qingyuan) in northeastern China over the last decade. We collected 456 daily precipitation samples from 2014 to 2022 and analysed the temporal dynamics of N deposition. NH4+-N, NO3--N, and total inorganic N (TIN) deposition ranged from 10.5 ± 3.5 (mean ± SD), 6.1 ± 1.6, and 16.6 ± 4.7 kg N ha-1 year-1, respectively. Over the measurement period, TIN deposition at Qingyuan decreased by 55 %, whereas that in comparable sites in East Asia declined by 14-34 %. We used a random forest model to determine factors influencing the deposition of NH4+-N, NO3--N, and TIN during the study period. NH4+-N deposition decreased by 60 % because of decreased agricultural NH3 emissions. Furthermore, NO3--N deposition decreased by 42 %, due to reduced NOx emissions from agricultural soil and fossil fuel combustion. The steep decline in N deposition in northeastern China was attributed to reduced coal consumption, improved emission controls on automobiles, and shifts in agricultural practices. Long-term monitoring is needed to assess regional air quality and the impact of N emission control regulations.

Nitrogen deposition caused higher increases in plant-derived organic carbon than microbial-derived organic carbon in forest soils

Plant- and microbial-derived organic carbon, two components of the soil organic carbon (SOC) pool in terrestrial ecosystems, are regulated by increased atmospheric nitrogen (N) deposition. However, the spatial patterns and driving factors of the responses of plant- and microbial-derived SOC to N deposition in forests are not clear, which hinders our understanding of SOC sequestration. In this study, we explored the spatial patterns of plant- and microbial-derived SOC, and their responses to N addition and elucidated their underlying mechanisms in forest soils receiving N addition at four sites with various soil and climate conditions. Plant- and microbial-derived SOC were quantified using lignin phenols and amino sugars, respectively. N addition increased the total microbial residues by 20.5% on average ranging from 9.4% to 34.0% in temperate forests but not in tropical forests, and the increase was mainly derived from fungal residues. Lignin phenols increased more in temperate forests (average of 63.8%) than in tropical forests (average of 15.7%) following N addition. The ratio of total amino sugars to lignin phenols was higher in temperate forests than in tropical forests and decreased with N addition in temperate forests. N addition mainly regulated soil microbial residues by affecting pH, SOC, exchangeable Ca2+, gram-negative bacteria biomass, and the C:N ratio, while it mainly had indirect effects on lignin phenols by altering SOC, soil C:N ratio, and gram-negative bacteria biomass. Overall, our findings suggested that N deposition caused a greater increase in plant-derived SOC than in microbial-derived SOC and that plant-derived SOC would have a more important role in sequestering SOC under increasing N deposition in forest ecosystems, particularly in temperate forests.

Plant secondary metabolism in a fluctuating world: climate change perspectives

Climate changes have unpredictable effects on ecosystems and agriculture. Plants adapt metabolically to overcome these challenges, with plant secondary metabolites (PSMs) being crucial for plant-environment interactions. Thus, understanding how PSMs respond to climate change is vital for future cultivation and breeding strategies. Here, we review PSM responses to climate changes such as elevated carbon dioxide, ozone, nitrogen deposition, heat and drought, as well as a combinations of different factors. These responses are complex, depending on stress dosage and duration, and metabolite classes. We finally identify mechanisms by which climate change affects PSM production ecologically and molecularly. While these observations provide insights into PSM responses to climate changes and the underlying regulatory mechanisms, considerable further research is required for a comprehensive understanding.

Eastern Canadian boreal forest soil and foliar chemistry show evidence of resilience to long-term nitrogen addition

The boreal forest is one of the world's largest terrestrial biome and plays crucial roles in global biogeochemical cycles, such as carbon (C) sequestration in vegetation and soil. However, the impacts of decades of N deposition on N-limited ecosystems, like the eastern Canadian boreal forest, remain unclear. For 13 years, N deposition was simulated by periodically adding ammonium nitrate on soils of two boreal coniferous forests (i.e., balsam fir and black spruce) of eastern Canada, at low (LN) and high (HN) rates, corresponding to 3 and 10 times the ambient N deposition, respectively. We show that more than a decade of N addition had no strong effects on mineral soil C, N, P, and cation concentrations and on foliar total Ca, K, Mg, and Mn concentrations. In organic soil, C stock was not affected by N addition while N stock increased, and exchangeable Ca2+ and Mg2+ decreased at the balsam fir site under HN treatment. At both sites, LN treatment had nearly no impact on foliage and soil chemistry but foliar N and N:P significantly increased under HN treatment, potentially leading to foliar nutrient imbalance. Overall, our work indicates that, in the eastern Canadian boreal forest, soil and foliar nutrient concentrations and stocks are resilient to increasing N deposition potentially because, in the context of N limitation, extra N would be rapidly immobilized by soil micro-organisms and vegetation. These findings could improve modeling future boreal forest soil C stocks and biomass growth and could help in planning forest management strategies in eastern Canada.

Roots selectively decompose litter to mine nitrogen and build new soil carbon

Plant-microbe interactions in the rhizosphere shape carbon and nitrogen cycling in soil organic matter (SOM). However, there is conflicting evidence on whether these interactions lead to a net loss or increase of SOM. In part, this conflict is driven by uncertainty in how living roots and microbes alter SOM formation or loss in the field. To address these uncertainties, we traced the fate of isotopically labelled litter into SOM using root and fungal ingrowth cores incubated in a Miscanthus x giganteus field. Roots stimulated litter decomposition, but balanced this loss by transferring carbon into aggregate associated SOM. Further, roots selectively mobilized nitrogen from litter without additional carbon release. Overall, our findings suggest that roots mine litter nitrogen and protect soil carbon.

Shifts in bacterial traits under chronic nitrogen deposition align with soil processes in arbuscular, but not ectomycorrhizal-associated trees

Nitrogen (N) deposition increases soil carbon (C) storage by reducing microbial activity. These effects vary in soil beneath trees that associate with arbuscular (AM) and ectomycorrhizal (ECM) fungi. Variation in carbon C and N uptake traits among microbes may explain differences in soil nutrient cycling between mycorrhizal associations in response to high N loads, a mechanism not previously examined due to methodological limitations. Here, we used quantitative Stable Isotope Probing (qSIP) to measure bacterial C and N assimilation rates from an added organic compound, which we conceptualize as functional traits. As such, we applied a trait-based approach to explore whether variation in assimilation rates of bacterial taxa can inform shifts in soil function under chronic N deposition. We show taxon-specific and community-wide declines of bacterial C and N uptake under chronic N deposition in both AM and ECM soils. N deposition-induced reductions in microbial activity were mirrored by declines in soil organic matter mineralization rates in AM but not ECM soils. Our findings suggest C and N uptake traits of bacterial communities can predict C cycling feedbacks to N deposition in AM soils, but additional data, for instance on the traits of fungi, may be needed to connect microbial traits with soil C and N cycling in ECM systems. Our study also highlights the potential of employing qSIP in conjunction with trait-based analytical approaches to inform how ecological processes of microbial communities influence soil functioning.

Components explain, but do eddy fluxes constrain? Carbon budget of a nitrogen-fertilized boreal Scots pine forest

Nitrogen (N) fertilization increases biomass and soil organic carbon (SOC) accumulation in boreal pine forests, but the underlying mechanisms remain uncertain. At two Scots pine sites, one undergoing annual N fertilization and the other a reference, we sought to explain these responses. We measured component fluxes, including biomass production, SOC accumulation, and respiration, and summed them into carbon budgets. We compared the resulting summations to ecosystem fluxes measured by eddy covariance. N fertilization increased most component fluxes (P < 0.05), especially SOC accumulation (20×). Only fine-root, mycorrhiza, and exudate production decreased, by 237 (SD = 28) g C m-2  yr-1 . Stemwood production increases were ascribed to this partitioning shift, gross primary production (GPP), and carbon-use efficiency, in that order. The methods agreed in their estimates of GPP in both stands (P > 0.05), but the components detected an increase in net ecosystem production (NEP) (190 (54) g C m-2  yr-1 ; P < 0.01) that eddy covariance did not (19 (62) g C m-2  yr-1 ; ns). The pairing of plots, the simplicity of the sites, and the strength of response provide a compelling description of N effects on the C budget. However, the disagreement between methods calls for further paired tests of N fertilization effects in simple forest ecosystems.

Mechanisms underlying the responses of microbial carbon and nitrogen use efficiencies to nitrogen addition are mediated by topography in a subtropical forest

Microbial carbon use efficiency (CUE) and nitrogen use efficiency (NUE) are key parameters determining the fate of C and N in soils. Atmospheric N deposition has been found to heavily impact multiple soil C and N transformations, but we lack understanding of the responses of CUE and NUE to N deposition, and it remains uncertain whether responses may be mediated by topography. Here, a N addition experiment with three treatment levels (0, 50 and 100 kg N ha^-1 yr^-1) was conducted in the valley and on the slope of a subtropical karst forest. Nitrogen addition increased microbial CUE and NUE at both topographic positions, but the underlying mechanisms differed. In the valley, the increase in CUE was associated with an increase in soil fungal richness:biomass and lower litter C:N, whereas on the slope, the response was linked with a reduced ratio of dissolved soil organic C (DOC) to available phosphorus (AVP) which reduced respiration, and increased root N:P stoichiometry. In the valley, the increase in NUE was explained by stimulated microbial N growth relative to gross N mineralization, which was associated with increased ratios of soil total dissolved N:AVP and fungal richness:biomass. In contrast, on the slope, the increase in NUE was attributed to reduced gross N mineralization, linked to increased DOC:AVP. Overall, our results highlight how topography-driven soil substrate availability and microbial properties can regulate microbial CUE and NUE.

Ericoid mycorrhizal fungi mediate the response of ombrotrophic peatlands to fertilization: a modeling study

Ericaceous shrubs adapt to the nutrient-poor conditions in ombrotrophic peatlands by forming symbiotic associations with ericoid mycorrhizal (ERM) fungi. Increased nutrient availability may diminish the role of ERM pathways in shrub nutrient uptake, consequently altering the biogeochemical cycling within bogs. To explore the significance of ERM fungi in ombrotrophic peatlands, we developed the model MWMmic (a peat cohort-based biogeochemical model) into MWMmic-NP by explicitly incorporating plant-soil nitrogen (N) and phosphorus (P) cycling and ERM fungi processes. The new model was applied to simulate the biogeochemical cycles in the Mer Bleue (MB) bog in Ontario, Canada, and their responses to fertilization. MWMmic_NP reproduced the carbon(C)-N-P cycles and vegetation dynamics observed in the MB bog, and their responses to fertilization. Our simulations showed that fertilization increased shrub biomass by reducing the C allocation to ERM fungi, subsequently suppressing the growth of underlying Sphagnum mosses, and decreasing the peatland C sequestration. Our species removal simulation further demonstrated that ERM fungi were key to maintaining the shrub-moss coexistence and C sink function of bogs. Our results suggest that ERM fungi play a significant role in the biogeochemical cycles in ombrotrophic peatlands and should be considered in future modeling efforts.

The carbon and nitrogen metabolisms of Ardisia quinquegona were altered in different degrees by canopy and understory nitrogen addition in a subtropical forest

Although effects of atmospheric nitrogen (N) deposition on forest plants have been widely investigated, N interception and absorption effects by forest canopy should not be neglected. Moreover, how N deposition change the molecular biological process of understory dominant plants, which was easily influenced by canopy interception so as to further change physiological performance, remains poorly understood. To assess the effects of N deposition on forest plants, we investigated the effects of understory (UAN) and canopy N addition (CAN) on the transcriptome and physiological properties of Ardisia quinquegona, a dominant subtropical understory plant species in an evergreen broad-leaved forest in China. We identified a total of 7394 differentially expressed genes (DEGs). Three of these genes were found to be co-upregulated in CAN as compared to control (CK) after 3 and 6 h of N addition treatment, while 133 and 3 genes were respectively found to be co-upregulated and co-downregulated in UAN as compared to CK. In addition, highly expressed genes including GP1 (a gene involved in cell wall biosynthesis) and STP9 (sugar transport protein 9) were detected in CAN, which led to elevated photosynthetic capacity and accumulation of protein and amino acid as well as decrease in glucose, sucrose, and starch contents. On the other hand, genes associated with transport, carbon and N metabolism, redox response, protein phosphorylation, cell integrity, and epigenetic regulation mechanism were affected by UAN, resulting in enhanced photosynthetic capacity and carbohydrates and accumulation of protein and amino acid. In conclusion, our results showed that the CAN compared to UAN treatment had less effects on gene regulation and carbon and N metabolism. Canopy interception of N should be considered through CAN treatment to simulate N deposition in nature.

No impact of nitrogen fertilization on carbon sequestration in a temperate Pinus densiflora forest

Carbon (C) sequestration capacity in forest ecosystems is generally constrained by soil nitrogen (N) availability. Consequently, N fertilization is seen as a promising tool for enhancing ecosystem-level C sequestration in N-limited forests. We examined the responses of ecosystem C (vegetation and soil) and soil N dynamics to 3 years of annual nitrogen-phosphorus-potassium (N₃P₄K₁ = 11.3 g N, 15.0 g P, 3.7 g K m^-2 year^-1) or PK fertilization (P₄K₁), observed over 4 years in a 40-year-old Pinus densiflora forest with poor N nutrition in South Korea. PK fertilization without N was performed to test for PK limitation other than N. Neither tree growth nor soil C fluxes responded to annual NPK or PK fertilization despite an increase in soil mineral N fluxes following NPK fertilization. NPK fertilization increased the rate of N immobilization and 80% of the added N was recovered from mineral soil in the 0-5 cm layer, suggesting that relatively little of the added N was available to trees. These results indicate that N fertilization does not always enhance C sequestration even in forests with poor N nutrition and should therefore be applied with caution.

Nitrogen fertilization weakens the linkage between soil carbon and microbial diversity: A global meta-analysis

Soil microbes make up a significant portion of the genetic diversity and play a critical role in belowground carbon (C) cycling in terrestrial ecosystems. Soil microbial diversity and organic C are often tightly coupled in C cycling processes; however, this coupling can be weakened or broken by rapid global change. A global meta-analysis was performed with 1148 paired comparisons extracted from 229 articles published between January 1998 and December 2021 to determine how nitrogen (N) fertilization affects the relationship between soil C content and microbial diversity in terrestrial ecosystems. We found that N fertilization decreased soil bacterial (-11%) and fungal diversity (-17%), but increased soil organic C (SOC) (+19%), microbial biomass C (MBC) (+17%), and dissolved organic C (DOC) (+25%) across different ecosystems. Organic N (urea) fertilization had a greater effect on SOC, MBC, DOC, and bacterial and fungal diversity than inorganic N fertilization. Most importantly, soil microbial diversity decreased with increasing SOC, MBC, and DOC, and the absolute values of the correlation coefficients decreased with increasing N fertilization rate and duration, suggesting that N fertilization weakened the linkage between soil C and microbial diversity. The weakened linkage might negatively impact essential ecosystem services under high rates of N fertilization; this understanding is important for mitigating the negative impact of global N enrichment on soil C cycling.

Plant-microbial responses to reduced precipitation depend on tree species in a temperate forest

Given that global change is predicted to increase the frequency and severity of drought in temperate forests, it is critical to understand the degree to which plant belowground responses cascade through the soil system to drive ecosystem responses to water stress. While most research has focused on plant and microbial responses independently of each other, a gap in our understanding lies in the integrated response of plant-microbial interactions to water stress. We investigated the extent to which divergent belowground responses to reduced precipitation between sugar maple trees (Acer saccharum) versus oak trees (Oak spp.) may influence microbial activity via throughfall exclusion in the field. Evidence that oak trees send carbon belowground to prime microbial activity more than maples under ambient conditions and in response to water stress suggests there is the potential for corresponding impacts of reduced precipitation on microbial activity. As such, we tested the hypothesis that differences in belowground C allocation between oaks and maples would stimulate microbial activity in the oak treatment soils and reduce microbial activity in in the sugar maple treatment soils compared to their respective controls. We found that the treatment led to declines in N mineralization, soil respiration, and oxidative enzyme activity in the sugar maple treatment plot. These declines may be due to sugar maple trees reducing root C transfers to the soil. By contrast, the reduced precipitation treatment enhanced soil respiration, as well as rates of N mineralization and peroxidase activity in the oak rhizosphere. This enhanced activity suggests that oak roots provided optimal rhizosphere conditions during water stress to prime microbial activity to support net primary production. With future changes in precipitation predicted for forests in the Eastern US, we show that the strength of plant-microbial interactions drives the degree to which reduced precipitation impacts soil C and nutrient cycling.

Response of plant functional traits to nitrogen enrichment under climate change: A meta-analysis

Soil nitrogen (N) supply is essential in influencing plant functional traits and regulating plant morphological and physiological performances. The effects of N on plants can be altered by complex environmental changes. However, conflicting results have been reported on the co-effects of N and climatic variables on plant performance, which may be attributed to differences in experiment setting and approach, e.g., ecosystem, duration, plant type, and fertilizer form. To elucidate the general response of plant performance to increasing soil N availability under climate change, a global meta-analysis was conducted to synthesize 380 publications studying interactions of N enrichment and four climatic variables (e.g., elevated atmospheric CO₂ (eCO₂), drought, precipitation, and warming) on performance-related traits (e.g., size, nutrient, and fitness). Results showed that N enrichment increased shoot and root size, nutrient, and fitness of terrestrial plants. The synergistic interactions of N × eCO₂ and antagonistic interactions of N × drought were found on plant overall performance (mainly on plant size), indicating that the N effects can be aggregated by eCO₂ and mitigated by drought. The co-effects of N and climatic variables on plant overall performance rely on experiment approach, duration, ecosystem type, or plant functional type. Synergistic interactions of N × eCO₂ and antagonistic interactions of N × drought, N × precipitation, and N × warming on plant overall performance were found mainly in greenhouse experiments and short-term experiments (duration ≤ one year), but not in the field or longer-term experiments. The results highlighted that N effects on plant performance were not isolated, but can be modified by climate changes. These findings can improve the future modeling predictions of plant performance under complex climate change and provide a fundamental basis for N management strategies to optimize plant performance in production, N nutrient, and reproduction while enabling sustainability of plant production systems.

More soil organic carbon is sequestered through the mycelium pathway than through the root pathway under nitrogen enrichment in an alpine forest

Plant roots and associated mycorrhizae exert a large influence on soil carbon (C) cycling. Yet, little was known whether and how roots and ectomycorrhizal (ECM) extraradical mycelia differentially contribute to soil organic C (SOC) accumulation in alpine forests under increasing nitrogen (N) deposition. Using ingrowth cores, the relative contributions of the root pathway (RP; i.e., roots and rhizosphere processes) and mycelium pathway (MP; i.e., extraradical mycelia and hyphosphere processes) to SOC accumulation were distinguished and quantified in an ECM-dominated forest receiving chronic N addition (25 kg N ha^-1  year^-1 ). Under the non-N addition, the RP facilitated SOC accumulation, although the MP reduced SOC accumulation. Nitrogen addition enhanced the positive effect of RP on SOC accumulation from +18.02 to +20.55 mg C g^-1 but counteracted the negative effect of MP on SOC accumulation from -5.62 to -0.57 mg C g^-1 , compared with the non-N addition. Compared with the non-N addition, the N-induced SOC accumulation was 1.62-2.21 and 3.23-4.74 mg C g^-1 , in the RP and the MP, respectively. The greater contribution of MP to SOC accumulation was mainly attributed to the higher microbial C pump (MCP) efficacy (the proportion of increased microbial residual C to the increased SOC under N addition) in the MP (72.5%) relative to the RP (57%). The higher MCP efficacy in the MP was mainly associated with the higher fungal metabolic activity (i.e., the greater fungal biomass and N-acetyl glucosidase activity) and greater binding efficiency of fungal residual C to mineral surfaces than those of RP. Collectively, our findings highlight the indispensable role of mycelia and hyphosphere processes in the formation and accumulation of stable SOC in the context of increasing N deposition.

Role of Tree Species, the Herb Layer and Watershed Characteristics in Nitrate Assimilation in a Central Appalachian Hardwood Forest

Forest plants that can assimilate nitrate may act as nitrate sink and, consequently, reduce nitrate losses from watershed ecosystems through leaching. This study, conducted at the Fernow Experimental Forest in West Virginia, quantified via nitrogen reductase activity (NRA) the nitrate assimilation of two tree species, red maple and sugar maple, and surrounding common herb-layer species at the tissue (foliage, roots) and plot level. NRA measurements were conducted in summer and spring. Furthermore, NRA was quantified under varying levels of soil nitrate availability due to fertilization, different stages in secondary forest succession, and watershed aspect. This study confirmed that NRA of mature maples does not respond to varying levels of soil nitrate availability. However, some herb-layer species’ NRA did increase with nitrogen fertilization, and it may be greater in spring than in summer. Combined with biomass, the herb layer’s NRA at the plot-level (NRAA) comprised 9 to 41% of the total (tree + herb-layer) foliar NRAA during the growing season. This demonstrates that the herb layer contributes to nitrate assimilation disproportionally to its small biomass in the forest and may provide a vernal dam to nitrate loss not only by its early presence but also by increased spring NRA relative to summer.

Tree biomass allocation differs by mycorrhizal association

Tree biomass allocation to leaves, roots, and wood affects the residence time of carbon in forests, with potentially dramatic implications for ecosystem carbon storage. However, drivers of tree biomass allocation remain poorly quantified. Using a combination of global datasets, we tested the relative importance of climate, leaf habit, and tree mycorrhizal associations on biomass allocation. We show that trees that associate with arbuscular mycorrhizal fungi allocate roughly 4% more of their biomass to root tissue than trees that associate with ectomycorrhizal fungi. Further, the effect of mycorrhizal association on root biomass allocation was greater than that of climate and similar in magnitude to that of leaf habit (evergreen vs. deciduous). These patterns in whole-plant biomass allocation are likely due to differences in carbon investment toward root vs fungal tissues, where trees with arbuscular mycorrhizal fungi favor root production while trees with ectomycorrhizal fungi favor fungal tissue production. These results suggest that considering tree mycorrhizal associations could improve our understanding of ecosystem carbon storage in terrestrial biosphere models: specifically, that greater within-tree allocation to root biomass in AM-associated tree species may contribute to stable soil carbon pools in forests dominated by arbuscular mycorrhizal fungi.