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Shah RA, Riyaz M, Ignacimuthu S, Sivasankaran K. Characterization and Molecular Phylogenetic Analysis of Subfamily Erebinae (Lepidoptera: Noctuoidea: Erebidae) Using Five Complete Mitochondrial Genomes. Biochem Genet 2024; 62:2224-2252. [PMID: 37891448 DOI: 10.1007/s10528-023-10528-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Accepted: 09/07/2023] [Indexed: 10/29/2023]
Abstract
In this study, the complete mitogenomes of Sympis rufibasis, Lacera noctilio, Oxyodes scrobiculata, Mocis undata, and Artena dotata were newly sequenced to bring up-to-date the database using the next-generation sequencing methods. The gene order of all sequenced mitogenomes was identical consisting of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs), and a non-coding A+T-rich region, which were common to other Lepidopteran insects. All protein-coding genes (PCGs) initiated with a canonical ATN codon and ended with TAN or an incomplete stop codon, single T. The A+T-rich region of S. rufibasis, L. noctilio, O. scrobiculata, M. undata, and A. dotata are 406 bp, 462 bp, 372 bp, 410 bp, and 406 bp long, respectively, containing number of characteristics that are distinctive to Noctuoidea moths. We analyzed concatenated amino acid sequences of protein-coding genes not including rRNAs, using Maximum Likelihood and Bayesian Inference methods. The phylogenetic analyses indicated that the tribe relationships within Erebinae were reconstructed as (Sypnini+((Erebini 1+Poaphilini 1)+((Euclidiini+Catocalini+(Hypopyrini+Erebini 2))+((Hulodini+(Poaphilini 2+Ophiusini))))). Phylogenetic analyses supported and confirmed the monophyly of the subfamilies' relationships as follows: (Hypeninae+Lymantriinae)+((Scoliopterginae+((Calpinae+Erebinae)+((Herminiinae+Aganainae)+Arctiinae)))) within Erebidae.
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Affiliation(s)
- Rauf Ahmad Shah
- Division of Taxonomy and Biodiversity, Entomology Research Institute, Loyola Collège, Chennai, Tamil Nadu, 600034, India
| | - Muzafar Riyaz
- Division of Taxonomy and Biodiversity, Entomology Research Institute, Loyola Collège, Chennai, Tamil Nadu, 600034, India
| | - Savarimuthu Ignacimuthu
- Xavier Research Foundation, St. Xavier's College, Palayamkottai, Tamil Nadu, 627002, India
- Creighton University, 2500 California Plaza, Omaha, USA
| | - Kuppusamy Sivasankaran
- Division of Taxonomy and Biodiversity, Entomology Research Institute, Loyola Collège, Chennai, Tamil Nadu, 600034, India.
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Li X, Breinholt JW, Martinez JI, Keegan K, Ellis EA, Homziak NT, Zwick A, Storer CG, McKenna D, Kawahara AY. Large-scale genomic data reveal the phylogeny and evolution of owlet moths (Noctuoidea). Cladistics 2024; 40:21-33. [PMID: 37787424 DOI: 10.1111/cla.12559] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Revised: 08/24/2023] [Accepted: 08/28/2023] [Indexed: 10/04/2023] Open
Abstract
The owlet moths (Noctuoidea; ~43-45K described species) are one of the most ecologically diverse and speciose superfamilies of animals. Moreover, they comprise some of the world's most notorious pests of agriculture and forestry. Despite their contributions to terrestrial biodiversity and impacts on ecosystems and economies, the evolutionary history of Noctuoidea remains unclear because the superfamily lacks a statistically robust phylogenetic and temporal framework. We reconstructed the phylogeny of Noctuoidea using data from 1234 genes (946.4 kb nucleotides) obtained from the genome and transcriptome sequences of 76 species. The relationships among the six families of Noctuoidea were well resolved and consistently recovered based on both concatenation and gene coalescence approaches, supporting the following relationships: Oenosandridae + (Notodontidae + (Erebidae + (Nolidae + (Euteliidae + Noctuidae)))). A Yule tree prior with three unlinked molecular clocks was identified as the preferred BEAST analysis using marginal-likelihood estimations. The crown age of Noctuoidea was estimated at 74.5 Ma, with most families originating before the end of the Paleogene (23 Ma). Our study provides the first statistically robust phylogenetic and temporal framework for Noctuoidea, including all families of owlet moths, based on large-scale genomic data.
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Affiliation(s)
- Xuankun Li
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, 100193, China
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611, USA
- Department of Biological Sciences, University of Memphis, Memphis, TN, 38152, USA
- Center for Biodiversity Research, University of Memphis, Memphis, TN, 38152, USA
| | - Jesse W Breinholt
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611, USA
- Precision Genomics, Intermountain Healthcare, St George, UT, 84790, USA
| | - Jose I Martinez
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611, USA
- Entomology and Nematology Department, University of Florida, Gainesville, FL, 32608, USA
| | - Kevin Keegan
- Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, 06268, USA
- Section of Invertebrate Zoology, Carnegie Museum of Natural History, 4400 Forbes Ave, Pittsburgh, PA, 15213-4080, USA
| | - Emily A Ellis
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611, USA
| | - Nicholas T Homziak
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611, USA
| | - Andreas Zwick
- Australian National Insect Collection, CSIRO National Research Collections Australia, Canberra, ACT, 2601, Australia
| | - Caroline G Storer
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611, USA
| | - Duane McKenna
- Department of Biological Sciences, University of Memphis, Memphis, TN, 38152, USA
- Center for Biodiversity Research, University of Memphis, Memphis, TN, 38152, USA
| | - Akito Y Kawahara
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611, USA
- Entomology and Nematology Department, University of Florida, Gainesville, FL, 32608, USA
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Volynkin AV, Titov SV, Matov AY, Tth B, Saldaitis A, Rakhimov RD, Egorov PV. On the taxonomy of the genus Isochlora Staudinger with descriptions of two new species from Mongolia and Qinghai, China (Lepidoptera: Noctuidae: Noctuinae). Zootaxa 2023; 5374:409-423. [PMID: 38220853 DOI: 10.11646/zootaxa.5374.3.5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Indexed: 01/16/2024]
Abstract
Two new species of the genus Isochlora Staudinger, 1882 are described: I. hreblayi Volynkin, Tth, Titov & Saldaitis, sp. n. (western Mongolia) and I. kozlovi Volynkin, Titov, Matov & Saldaitis, sp. n. (Qinghai Province, China). The type species of the genus-group names Chamyla Staudinger, 1900 and Grumia Alphraky, 1892 (I. arctomys Alphraky, 1897 and I. flora (Alphraky, 1892), respectively) are examined, and their synonymy with Isochlora is revised. The synonymy of Chamyla idia Staudinger, 1900 with Isochlora arctomys Alphraky, 1897 is revised as junior synonymies. Lectotypes are designated for Isochlora arctomys Alphraky, 1897, Chamyla idia Staudinger, 1900 and Grumia flora Alphraky, 1892. Isochlora intricans (Alphraky, 1882) is reported from Kazakhstan for the first time. Adults as well as male and female genitalia are illustrated.
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Affiliation(s)
- Anton V Volynkin
- Altai State University; Lenina Avenue; 61; RF-656049; Barnaul; Russia.
| | - Sergey V Titov
- Institute of Zoology; Entomology laboratory; Al-Farabi Avenue; 93; KZ-050060; Almaty; Kazakhstan; Department of Biology and Ecology; the Research Centre for Environmental Monitoring; Toraighyrov University; Lomova str. 64; KZ-140008; Pavlodar; Kazakhstan; Scientific Center Bioarchaeology; Institute of Archaeological Research; Margulan University; Olzhabay Batyr str. 60; KZ-140002; Pavlodar; Kazakhstan.
| | - Alexey Yu Matov
- Zoological Institute; Russian Academy of Sciences; Universitetskaya Embankment 1; St.-Petersburg; RF-199034 Russia..
| | - Balzs Tth
- Department of Zoology; Hungarian Natural History Museum; Baross utca; 13; H-1088 Budapest; Hungary.
| | - Aidas Saldaitis
- Nature Research Centre; Akademijos str.; 2; LT-08412; Vilnius-21; Lithuania.
| | - Ruslan D Rakhimov
- Institute of Zoology; Entomology laboratory; Al-Farabi Avenue; 93; KZ-050060; Almaty; Kazakhstan.
| | - Petr V Egorov
- Institute of Zoology; Entomology laboratory; Al-Farabi Avenue; 93; KZ-050060; Almaty; Kazakhstan.
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RIYAZ M, SHAH RA, SAVARIMUTHU I, KUPPUSAMY S. Comparative analysis of the mitochondrial genome of Hypospila bolinoides and Lygephila dorsigera (Lepidoptera: Noctuoidea: Erebidae), with implications for their phylogeny. EUROPEAN JOURNAL OF ENTOMOLOGY 2023; 120:187-198. [DOI: 10.14411/eje.2023.024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/30/2023]
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Phylogenomics including the newly sequenced mitogenomes of two moths (Noctuoidea, Erebidae) reveals Ischyja manlia (incertae sedis) as a member of subfamily Erebinae. Genetica 2023; 151:105-118. [PMID: 36708484 DOI: 10.1007/s10709-023-00180-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2022] [Accepted: 01/17/2023] [Indexed: 01/29/2023]
Abstract
We sequenced the mitogenomes of two Erebid species, namely Ischyja manlia (Cramer, 1776) and Rusicada privata (Walker, 1865) to analyse the phylogenetic relationship and to establish the taxonomic position of incertae sedis members of the family Erebidae. The two circular genomes of I. manlia and R. privata were 15,879 bp and 15,563 bp long, respectively. The gene order was identical, containing 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and an A + T-rich region. The nucleotide compositions of the A + T-rich region of both mitogenomes were similar: 80.65% for R. privata, and 81.09% for I. manlia. The AT skew and GC skew were slightly positive in I. manlia and negative in R. privata. In I. manlia and R. privata, except for cox1 which started with CGA and TTG codons, all the other 12 PCGs started with ATN codon. The A + T-rich regions of I. manlia and R. privata were 433 and 476 bp long, respectively, and contained common characteristics of Noctuoidea moths. At present, Ischyja is treated as Erebinae incertae sedis. However, phylogenetic analysis conducted in the present study reveals that the genus Ischyja is most likely to be a member of the subfamily Erebinae.
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Kalawate AS, Prachee Surwade, S.N. Pawara. An annotated checklist of the economically important family of moths (Lepidoptera: Heterocera: Noctuidae) of the northern Western Ghats, India, with notes on their type species, diversity, distribution, host plants, and an unusual new faunistic record. JOURNAL OF THREATENED TAXA 2023. [DOI: 10.11609/jott.7824.15.2.22632-22653] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/01/2023] Open
Abstract
This research is based on the surveys conducted from 2015─2018 resulting in identification of 37 species of 25 genera of noctuid moths. From the surveys, three new records including one unusual species namely, Conservula indica (Moore, 1867) are reported in the present study. A total of eight species of this family are reported as endemic. Two species—C. indica and Pyrrhia umbra—are reported first time from the Western Ghats part of Maharashtra. In this communication, notes on host plant, type species, endemic species with their distribution are provided.
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Valavi P, Soleimani Harouni N, Safaei Moghadam M. The lived experience of parents from educating morality to their children Phenomenological study. JOURNAL OF EDUCATION AND HEALTH PROMOTION 2022; 11:354. [PMID: 36618474 PMCID: PMC9818687 DOI: 10.4103/jehp.jehp_1053_21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 07/17/2021] [Accepted: 01/11/2022] [Indexed: 06/17/2023]
Abstract
BACKGROUND The aim of this study was to identify the parents' experience of moral education to their children in secondary school and with a phenomenological method. MATERIALS AND METHODS Participants include parents of students who received a high score after taking Dr. Lotfabadi's moral development test and extracting the results. The students' parents consciously and satisfactorily participated in the semi-structured interviews prepared for this purpose, and the interviews continued until the saturation stage, so the final sample size was 22 participants. The data obtained from the interview were then analyzed using the Van Menen method to discover the meaning of the students "parents" experiences of moral education. RESULTS Findings were revealed in 5 main themes of social ethics, family ethics, individual ethics, self-care ethics, and environmental ethics and 15 sub-themes. CONCLUSION According to the findings of this study, it seems that parents to pay more attention to the components of social ethics, family ethics, individual-human ethics, self-care ethics, environmental ethics to succeed in raising children with desirable moral development pay special attention to these components to raise worthy children with desirable moral development.
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Affiliation(s)
- Parvaneh Valavi
- Department of Educational Sciences, Faculty of Educational Sciences and Psychology, Shahid Chamran University of Ahvaz, Ahvaz, Iran
| | - Nooshafarin Soleimani Harouni
- Department of Educational Sciences, Faculty of Educational Sciences and Psychology, Shahid Chamran University of Ahvaz, Ahvaz, Iran
| | - Masoud Safaei Moghadam
- Department of Educational Sciences, Faculty of Educational Sciences and Psychology, Shahid Chamran University of Ahvaz, Ahvaz, Iran
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Shah RA, Riyaz M, Ignacimuthu S, Sivasankaran K. Characterization of four mitochondrial genomes from superfamilies Noctuoidea and Hyblaeoidea with their phylogenetic implications. Sci Rep 2022; 12:18926. [PMID: 36344589 PMCID: PMC9640664 DOI: 10.1038/s41598-022-21502-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2021] [Accepted: 09/28/2022] [Indexed: 11/09/2022] Open
Abstract
In the present study, the newly sequenced mitogenomes of three Noctuoid and one Hyblaeoid (Insecta: Lepidoptera) species were annotated based on next-generation sequence data. The complete mitogenome lengths of Oraesia emarginata, Actinotia polyodon, Odontodes seranensis, and Hyblaea puera were 16,668 bp, 15,347 bp, 15,419 bp, and 15,350 bp, respectively. These mitogenomes were found to encode 37 typical mitochondrial genes (13 protein-coding, 22 transfer RNA, 2 ribosomal RNA) and a control region, similar to most Lepidoptera species. Maximum likelihood (ML) methods and Bayesian inference (BI) were used to reconstruct the phylogenetic relationships of the moths. This study showed the relationships of Noctuoid families as follows: (Notodontidae + (Erebidae + (Nolidae + (Euteliidae + Noctuidae)))). Furthermore, the species H. puera was separately clustered from the Noctuoidea member groups. Till now, the species from the superfamily Hyblaeoidea have not been discussed for their phylogenetic relationships. In this study, the complete mitochondrial genome of one species from the superfamily Hyblaeoidea was analysed.
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Affiliation(s)
- Rauf Ahmad Shah
- Division of Taxonomy and Biodiversity, Entomology Research Institute, Loyola Collège, Chennai, Tamil Nadu, 600034, India
| | - Muzafar Riyaz
- Division of Taxonomy and Biodiversity, Entomology Research Institute, Loyola Collège, Chennai, Tamil Nadu, 600034, India
| | | | - Kuppusamy Sivasankaran
- Division of Taxonomy and Biodiversity, Entomology Research Institute, Loyola Collège, Chennai, Tamil Nadu, 600034, India.
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Zheng X, Zhang R, Yue B, Wu Y, Yang N, Zhou C. Enhanced Resolution of Evolution and Phylogeny of the Moths Inferred from Nineteen Mitochondrial Genomes. Genes (Basel) 2022; 13:genes13091634. [PMID: 36140802 PMCID: PMC9498458 DOI: 10.3390/genes13091634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Revised: 09/03/2022] [Accepted: 09/06/2022] [Indexed: 11/21/2022] Open
Abstract
The vast majority (approximately 90%) of Lepidoptera species belong to moths whose phylogeny has been widely discussed and highly controversial. For the further understanding of phylogenetic relationships of moths, nineteen nearly complete mitochondrial genomes (mitogenomes) of moths involved in six major lineages were sequenced and characterized. These mitogenomes ranged from 15,177 bp (Cyclidia fractifasciata) to 15,749 bp (Ophthalmitis albosignaria) in length, comprising of the core 37 mitochondrial genes (13 protein-coding genes (PCGs) + 22 tRNAs + two rRNAs) and an incomplete control region. The order and orientation of genes showed the same pattern and the gene order of trnM-trnI-trnQ showed a typical rearrangement of Lepidoptera compared with the ancestral order of trnI-trnQ-trnM. Among these 13 PCGs, ATP8 exhibited the fastest evolutionary rate, and Drepanidae showed the highest average evolutionary rate among six families involved in 66 species. The phylogenetic analyses based on the dataset of 13 PCGs suggested the relationship of (Notodontidae + (Noctuidae + Erebidae)) + (Geometridae + (Sphingidae + Drepanidae)), which suggested a slightly different pattern from previous studies. Most groups were well defined in the subfamily level except Erebidae, which was not fully consistent across bayesian and maximum likelihood methods. Several formerly unassigned tribes of Geometridae were suggested based on mitogenome sequences despite a not very strong support in partial nodes. The study of mitogenomes of these moths can provide fundamental information of mitogenome architecture, and the phylogenetic position of moths, and contributes to further phylogeographical studies and the biological control of pests.
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Affiliation(s)
- Xiaofeng Zheng
- Key Laboratory of Bioresources and Ecoenvironment (Ministry of Education), College of Life Sciences, Sichuan University, Chengdu 610064, China
| | - Rusong Zhang
- Key Laboratory of Bioresources and Ecoenvironment (Ministry of Education), College of Life Sciences, Sichuan University, Chengdu 610064, China
| | - Bisong Yue
- Key Laboratory of Bioresources and Ecoenvironment (Ministry of Education), College of Life Sciences, Sichuan University, Chengdu 610064, China
| | - Yongjie Wu
- Key Laboratory of Bioresources and Ecoenvironment (Ministry of Education), College of Life Sciences, Sichuan University, Chengdu 610064, China
| | - Nan Yang
- Institute of Qinghai-Tibetan Plateau, Southwest Minzu University, Chengdu 610064, China
- Collaborative Innovation Center for Ecological Animal Husbandry of Qinghai-Tibetan Plateau, Southwest Minzu University, Chengdu 610064, China
- Correspondence: (N.Y.); (C.Z.)
| | - Chuang Zhou
- Key Laboratory of Bioresources and Ecoenvironment (Ministry of Education), College of Life Sciences, Sichuan University, Chengdu 610064, China
- Correspondence: (N.Y.); (C.Z.)
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Johnson TL, Elgar MA, Symonds MRE. Movement and olfactory signals: Sexually dimorphic antennae and female flightlessness in moths. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.919093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Darwin argued a role for sexual selection in the evolution of male sensory structures, including insect antennae, the strength of which will depend upon the importance of early arrival at receptive females. There is remarkable variation in the nature and degree of sexual dimorphism in moth antennae, with males of some species having spectacular, feathery antennae. Although it is widely assumed that these elaborate structures provide greater sensitivity to chemical signals (sex pheromones), the factors underlying the interspecific diversity in male antennal structure and size are poorly understood. Because male antennal morphology may be affected by several female life–history traits, including flight ability, we conducted a phylogenetic comparative analysis to test how these traits are linked, using data from 93 species of moths across 11 superfamilies. Our results reveal that elaborate antennae in males have evolved more frequently in species where females are monandrous. Further, female loss of flight ability evolved more frequently in species where males have elaborate antennae. These results suggest that elaborate antennae have evolved in response to more intense male competition, arising from female monandry, and that the evolution of elaborate antennae in males has, in turn, shaped the evolution of female flightlessness.
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Schmidt BC. Confirmed occurrence of the tribe Apameini (Lepidoptera, Noctuidae, Noctuinae) in the Neotropical region: a new genus endemic to Costa Rican montane forests. Zookeys 2022; 1114:121-130. [PMID: 36761704 PMCID: PMC9848747 DOI: 10.3897/zookeys.1114.84361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2022] [Accepted: 05/18/2022] [Indexed: 11/12/2022] Open
Abstract
The genus Nublapamea gen. nov. is described (type species: Tracheaaltivolans Schaus), here determined to belong to the primarily temperate Holarctic tribe Apameini (Noctuidae: Noctuinae). Currently known only from mid- to upper elevation montane forests of Costa Rica, Nublapamea is a disjunct southern extension of a largely northern hemisphere temperate region fauna. The life history of Nublapameaaltivolans is unknown; it may be associated with chusquea bamboo (Chusquea Kunth), as most Apameini are dietary specialists on graminoids.
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Affiliation(s)
- B. Christian Schmidt
- Canadian National Collection of Insects, Arachnids and Nematodes, Agriculture and Agri-Food Canada, K.W. Neatby Bldg., 960 Carling Ave., Ottawa, ON, K1A 0C6, CanadaCanadian National Collection of InsectsOttawaCanada
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12
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Palting JD, Moore W. Molecular phylogeny of Lichen Tiger Moths (Lepidoptera, Erebidae, Arctiinae, Lithosiini): a contribution toward classifying Western Hemisphere genera. Zookeys 2022; 1108:119-139. [PMID: 36760697 PMCID: PMC9848871 DOI: 10.3897/zookeys.1108.80783] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Accepted: 05/16/2022] [Indexed: 11/12/2022] Open
Abstract
This study analyzes molecular sequence data from one mitochondrial (COI) and two nuclear (28S, RPS5) genes to test the monophyly of previously proposed subtribes of the Lithosiini (Erebidae: Arctidinae), including subtribal assignment of all North American genera that occur north of Mexico. After transferring Gardinia W.F. Kirby from Lithosiina to Cisthenina, there is strong support for a monophyletic Lithosiina, which includes three originally unplaced Nearctic genera: Agylla Walker, Inopsis Felder, and Gnamptonychia Hampson. The result of this study removes Clemensia Packard and Pronola Hampson from Cisthenina and places them in subtribe Clemensiina. We synonymize Eudesmiina under Cisthenina. After these changes, the phylogeny shows strong support for the monophyly of Cisthenina, which includes a further three unplaced Nearctic genera: Gardinia Kirby, Bruceia Neumögen, and Ptychoglene Felder. The monophyly of Cisthenina (including Eudesmia and Gardinia) is supported by two apomorphies found in adults: the apodemes of the second abdominal sternite are long and the anterolateral processes are fused with the rest of the sternite.
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Affiliation(s)
- John D. Palting
- Graduate Interdisciplinary Program in Entomology and Insect Science, University of Arizona, Tucson, Arizona, 85721-0036, USAUniversity of ArizonaTucsonUnited States of America
| | - Wendy Moore
- Graduate Interdisciplinary Program in Entomology and Insect Science, University of Arizona, Tucson, Arizona, 85721-0036, USAUniversity of ArizonaTucsonUnited States of America
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Davis RB, Õunap E, Tammaru T. A supertree of Northern European macromoths. PLoS One 2022; 17:e0264211. [PMID: 35180261 PMCID: PMC8856531 DOI: 10.1371/journal.pone.0264211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Accepted: 02/05/2022] [Indexed: 11/19/2022] Open
Abstract
Ecological and life-history data on the Northern European macromoth (Lepidoptera: Macroheterocera) fauna is widely available and ideal for use in answering phylogeny-based research questions: for example, in comparative biology. However, phylogenetic information for such studies lags behind. Here, as a synthesis of all currently available phylogenetic information on the group, we produce a supertree of 114 Northern European macromoth genera (in four superfamilies, with Geometroidea considered separately), providing the most complete phylogenetic picture of this fauna available to date. In doing so, we assess those parts of the phylogeny that are well resolved and those that are uncertain. Furthermore, we identify those genera for which phylogenetic information is currently too poor to include in such a supertree, or entirely absent, as targets for future work. As an aid to studies involving these genera, we provide information on their likely positions within the macromoth tree. With phylogenies playing an ever more important role in the field, this supertree should be useful in informing future ecological and evolutionary studies.
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Affiliation(s)
- Robert B. Davis
- Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Erki Õunap
- Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu, Estonia
| | - Toomas Tammaru
- Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
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Varga Z, Ronkay G, Ronkay L. Contributions to the taxonomy and biogeography of the genus Dichagyris (subg. Dichagyris) Lederer, 1867 (Lepidoptera, Noctuidae, Noctuinae). ACTA ZOOL ACAD SCI H 2021. [DOI: 10.17109/azh.67.4.313.2021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
The taxonomically important characters and subgeneric subdivision of Dichagyris are presented with several historical and nomenclatural considerations. Subdivision of D. vallesiaca is revised based on the type material of the known subspecies. The D. psammochroa group is revised, with description of a new species, D. kurbatskyi from Kazakhstan, and one new subspecies, D. psammochroa kopetdaghimena from the Kopet-Dagh massif. The D. taftana group is revised, with the description of a new species (D. guentereberti from Afghanistan) and two new subspecies (D. taftana elborsasta and D. taftana safavida, from different areas of Iran). The eastern sister species of D. humilis, D. hypotacta from Afghanistan and Pakistan, is described. Major phylogenetic clades of Dichagyris s. str. are associated to western Palaearctic and/or Central Asiatic mountainous regions. Core areas of allopatric speciation of Dichagyris s. str. are discussed with taxonomic considerations and outlook on the subgenera Yigoga and Albocosta, as well.
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Sihvonen P, Murillo-Ramos L, Wahlberg N, Hausmann A, Zilli A, Ochse M, Staude HS. Insect taxonomy can be difficult: a noctuid moth (Agaristinae: Aletopus imperialis) and a geometrid moth (Sterrhinae: Cartaletis dargei) combined into a cryptic species complex in eastern Africa (Lepidoptera). PeerJ 2021; 9:e11613. [PMID: 34277147 PMCID: PMC8272464 DOI: 10.7717/peerj.11613] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Accepted: 05/24/2021] [Indexed: 11/20/2022] Open
Abstract
The systematic position of a large and strikingly coloured reddish-black moth, Cartaletis dargei Herbulot, 2003 (Geometridae: Sterrhinae) from Tanzania, has remained questionable since its description. Here we present molecular and morphological evidence showing that Cartaletis dargei only superficially resembles true Cartaletis Warren, 1894 (the relative name currently considered a junior synonym of Aletis Hübner, 1820), which are unpalatable diurnal moths superficially resembling butterflies, and that it is misplaced in the family Geometridae. We transfer it to Noctuidae: Agaristinae, and combine it with the genus Aletopus Jordan, 1926, from Tanzania, as Aletopus dargei (Herbulot, 2003) (new combination). We revise the genus Aletopus to contain three species, but find that it is a cryptic species complex that needs to be revised with more extensive taxon sampling. Our results demonstrate the difficulties in interpreting and classifying biological diversity. We discuss the problems in species delimitation and the potential drivers of evolution in eastern Africa that led to phenotypic similarity in unrelated lepidopteran lineages.
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Affiliation(s)
- Pasi Sihvonen
- Finnish Museum of Natural History “Luomus”, University of Helsinki, Helsinki, Finland
| | - Leidys Murillo-Ramos
- Departamento de Biologia, Universidad de Sucre, Sincelejo, Sucre, Colombia
- Department of Biology, Lund University, Lund, Sweden
| | | | - Axel Hausmann
- SNSB Zoologische Staatssammlung München, Munich, Germany
| | - Alberto Zilli
- Department of Life Sciences, Natural History Museum, London, United Kingdom
| | | | - Hermann S. Staude
- Caterpillar Rearing Group (CRG), LepSoc Africa, Magaliesburg, South Africa
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16
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Le Kim T, Le Sy V. mPartition: A Model-Based Method for Partitioning Alignments. J Mol Evol 2020; 88:641-652. [PMID: 32864711 DOI: 10.1007/s00239-020-09963-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2019] [Accepted: 08/08/2020] [Indexed: 10/23/2022]
Abstract
Maximum likelihood (ML) analysis of nucleotide or amino-acid alignments is widely used to infer evolutionary relationships among species. Computing the likelihood of a phylogenetic tree from such alignments is a complicated task because the evolutionary processes typically vary across sites. A number of studies have shown that partitioning alignments into sub-alignments of sites, where each sub-alignment is analyzed using a different model of evolution (e.g., GTR + I + G), is a sensible strategy. Current partitioning methods group sites into subsets based on the inferred rates of evolution at the sites. However, these do not provide sufficient information to adequately reflect the substitution processes of characters at the sites. Moreover, the site rate-based methods group all invariant sites into one subset, potentially resulting in wrong phylogenetic trees. In this study, we propose a partitioning method, called mPartition, that combines not only the evolutionary rates but also substitution models at sites to partition alignments. Analyses of different partitioning methods on both real and simulated datasets showed that mPartition was better than the other partitioning methods tested. Notably, mPartition overcame the pitfall of grouping all invariant sites into one subset. Using mPartition may lead to increased accuracy of ML-based phylogenetic inference, especially for multiple loci or whole genome datasets.
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Affiliation(s)
- Thu Le Kim
- University of Engineering and Technology, Vietnam National University Hanoi, 144 Xuan Thuy, Cau Giay, Hanoi, 10000, Vietnam.,Hanoi University of Science and Technology, 1st Dai Co Viet, Hai Ba Trung, Hanoi, 10000, Vietnam
| | - Vinh Le Sy
- University of Engineering and Technology, Vietnam National University Hanoi, 144 Xuan Thuy, Cau Giay, Hanoi, 10000, Vietnam.
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Pohl GR, andry JF, Schmidt BC, deWaard JR. Lepidoptera of Canada. Zookeys 2019; 819:463-505. [PMID: 30713459 PMCID: PMC6355748 DOI: 10.3897/zookeys.819.27259] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2018] [Accepted: 08/20/2018] [Indexed: 11/21/2022] Open
Abstract
The known Lepidoptera (moths and butterflies) of the provinces and territories of Canada are summarised, and current knowledge is compared to the state of knowledge in 1979. A total of 5405 species are known to occur in Canada in 81 families, and a further 50 species have been reported but are unconfirmed. This represents an increase of 1348 species since 1979. The DNA barcodes available for Canadian Lepidoptera are also tabulated, based on a dataset of 148,314 specimens corresponding to 5842 distinct clusters. A further yet-undiscovered 1400 species of Lepidoptera are estimated to occur in Canada. The Gelechioidea are the most poorly known major lineage of Lepidoptera in Canada. Nunavut, Prince Edward Island, and British Columbia are thought to show the greatest deficit in our knowledge of Lepidoptera. The unglaciated portions of the Yukon (Beringia), and the Pacific Maritime, Montane Cordillera, and Western Interior Basin ecozones of British Columbia are also identified as hotbeds of undescribed biodiversity.
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Affiliation(s)
- Gregory R. Pohl
- Natural Resources Canada, Canadian Forest Service, 5320 – 122 St., Edmonton, Alberta, T6H 3S5, CanadaNatural Resources CanadaEdmontonCanada
| | - Jean-François andry
- Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, 960 Carling Avenue, Ottawa, Ontario, K1A 0C6, CanadaAgriculture and Agri-Food CanadaOttawaCanada
| | - B. Chris Schmidt
- Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, 960 Carling Avenue, Ottawa, Ontario, K1A 0C6, CanadaAgriculture and Agri-Food CanadaOttawaCanada
| | - Jeremy R. deWaard
- Centre for Biodiversity Genomics, University of Guelph, 50 Stone Road East, Guelph, Ontario, N1G 2W1, CanadaUniversity of GuelphGuelphCanada
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Yang M, Song L, Shi Y, Yin Y, Wang Y, Zhang P, Chen J, Lou L, Liu X. The complete mitochondrial genome of a medicinal insect, Hydrillodes repugnalis (Lepidoptera: Noctuoidea: Erebidae), and related phylogenetic analysis. Int J Biol Macromol 2018; 123:485-493. [PMID: 30359659 DOI: 10.1016/j.ijbiomac.2018.10.149] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2018] [Revised: 10/21/2018] [Accepted: 10/21/2018] [Indexed: 02/08/2023]
Abstract
The complete mitochondrial genome (mitogenome) of an important medicinal insect Hydrillodes repugnalis (Lepidoptera: Noctuoidea) was sequenced and analyzed. The mitogenome is circular with 15,570 bp long, and shows typical gene content and arrangement. Nucleotide composition is highly biased toward A + T nucleotides (81.1%). All protein-coding genes (PCGs) initiate with canonical start codon ATN, except for cox1 being CGA. The typical stop codon TAA is used for most PCGs, while the nad4l uses the TAG, and cox1 and cox2 use incomplete termination codon T. All tRNAs have a typical clover-leaf structure, except for trnS1 (AGN) lacking the dihydrouridine arm. Comparative mitogenome analysis showed that the motif "ATGATAA" between atp8 and atp6, and the motif "ATACTAA" between trnS2 and nad1 are commonly present in noctuoid mitogenomes. In A + T-rich regions, the motif "ATAGA" and subsequent poly-T structure, the motif "ATTTA" and followed macrosatellite (AT)n element and an "A"-rich 3' end upstream of the trnM gene can be recognized across noctuoid mitogenomes. Phylogenetic analyses showed that H. repugnalis is nested into the Erebidae clade, consistently being sister to the Aganainae. Within Noctuoidea, the (Notodontidae + (Erebidae + (Nolidae + (Euteliidae + Noctuidae)))) was consistently recovered firstly based on multiple mitochondrial datasets.
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Affiliation(s)
- Mingsheng Yang
- College of Life Science and Agronomy, Zhoukou Normal University, Zhoukou, Henan 466000, China
| | - Lu Song
- College of Life Science and Agronomy, Zhoukou Normal University, Zhoukou, Henan 466000, China
| | - Yuxia Shi
- College of Life Science and Agronomy, Zhoukou Normal University, Zhoukou, Henan 466000, China
| | - Yanjun Yin
- Yongqiao District Plant Protection Station, Suzhou, Anhui 234000, China
| | - Yueying Wang
- Suzhou Academy of Agricultural Sciences, Suzhou, Anhui 234000, China
| | - Peipei Zhang
- Suzhou Academy of Agricultural Sciences, Suzhou, Anhui 234000, China
| | - Jiaqin Chen
- Oil Crops Research Institute of Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou 550000, China
| | - Lijiao Lou
- Oil Crops Research Institute of Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou 550000, China
| | - Xiaomeng Liu
- College of Life Science and Agronomy, Zhoukou Normal University, Zhoukou, Henan 466000, China.
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Rota J, Malm T, Chazot N, Peña C, Wahlberg N. A simple method for data partitioning based on relative evolutionary rates. PeerJ 2018; 6:e5498. [PMID: 30186687 PMCID: PMC6118207 DOI: 10.7717/peerj.5498] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2017] [Accepted: 08/01/2018] [Indexed: 11/20/2022] Open
Abstract
BACKGROUND Multiple studies have demonstrated that partitioning of molecular datasets is important in model-based phylogenetic analyses. Commonly, partitioning is done a priori based on some known properties of sequence evolution, e.g. differences in rate of evolution among codon positions of a protein-coding gene. Here we propose a new method for data partitioning based on relative evolutionary rates of the sites in the alignment of the dataset being analysed. The rates are inferred using the previously published Tree Independent Generation of Evolutionary Rates (TIGER), and the partitioning is conducted using our novel python script RatePartitions. We conducted simulations to assess the performance of our new method, and we applied it to eight published multi-locus phylogenetic datasets, representing different taxonomic ranks within the insect order Lepidoptera (butterflies and moths) and one phylogenomic dataset, which included ultra-conserved elements as well as introns. METHODS We used TIGER-rates to generate relative evolutionary rates for all sites in the alignments. Then, using RatePartitions, we partitioned the data into partitions based on their relative evolutionary rate. RatePartitions applies a simple formula that ensures a distribution of sites into partitions following the distribution of rates of the characters from the full dataset. This ensures that the invariable sites are placed in a partition with slowly evolving sites, avoiding the pitfalls of previously used methods, such as k-means. Different partitioning strategies were evaluated using BIC scores as calculated by PartitionFinder. RESULTS Simulations did not highlight any misbehaviour of our partitioning approach, even under difficult parameter conditions or missing data. In all eight phylogenetic datasets, partitioning using TIGER-rates and RatePartitions was significantly better as measured by the BIC scores than other partitioning strategies, such as the commonly used partitioning by gene and codon position. We compared the resulting topologies and node support for these eight datasets as well as for the phylogenomic dataset. DISCUSSION We developed a new method of partitioning phylogenetic datasets without using any prior knowledge (e.g. DNA sequence evolution). This method is entirely based on the properties of the data being analysed and can be applied to DNA sequences (protein-coding, introns, ultra-conserved elements), protein sequences, as well as morphological characters. A likely explanation for why our method performs better than other tested partitioning strategies is that it accounts for the heterogeneity in the data to a much greater extent than when data are simply subdivided based on prior knowledge.
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Affiliation(s)
- Jadranka Rota
- Department of Biology, Lund University, Lund, Sweden
| | - Tobias Malm
- Department of Zoology, Swedish Museum of Natural History, Stockholm, Sweden
| | | | - Carlos Peña
- HipLead, San Francisco, CA, United States of America
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Villas-Boas IM, Bonfá G, Tambourgi DV. Venomous caterpillars: From inoculation apparatus to venom composition and envenomation. Toxicon 2018; 153:39-52. [PMID: 30145232 DOI: 10.1016/j.toxicon.2018.08.007] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2018] [Revised: 07/27/2018] [Accepted: 08/20/2018] [Indexed: 11/16/2022]
Abstract
Envenomation by the larval or pupal stages of moths occurs when the victim presses their hairs. They penetrate the subcutaneous tissue, releasing toxins such as proteolytic enzymes, histamine and other pro-inflammatory substances. Cutaneous reactions, including severe pain, oedema and erythema are frequent local manifestations of caterpillar envenomation, but, in some cases, the reactions can evolve into vesicles, bullae, erosions, petechiae, superficial skin necrosis and ulcerations. Alternatively, some individual can develop allergic reactions, renal failure, osteochondritis, deformity and immobilization of the affected joints and intracerebral bleeding. Caterpillars produce venom to protect themselves from predators; contact with humans is accidental and deserves close attention. Their venoms have not been well studied, except for toxins from some few species. The present review brings together data on venomous caterpillars of moths, primarily addressing the available literature on diversity among the different families that cause accident in humans, the structures used in their defense, venom composition and clinical aspects of the envenomations. Understanding the molecular mechanisms of action of caterpillars' toxins may lead to the development of more adequate treatments.
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Affiliation(s)
- Isadora Maria Villas-Boas
- Immunochemistry Laboratory, Butantan Institute, Av. Vital Brazil, 1500, 05503-900, São Paulo, SP, Brazil
| | - Giuliano Bonfá
- Immunochemistry Laboratory, Butantan Institute, Av. Vital Brazil, 1500, 05503-900, São Paulo, SP, Brazil
| | - Denise V Tambourgi
- Immunochemistry Laboratory, Butantan Institute, Av. Vital Brazil, 1500, 05503-900, São Paulo, SP, Brazil.
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Yao S, Wang ZH, Zhu XY, Hao JS. The complete mitochondrial genome of the Sideridis albicosta (Lepidoptera: Noctuoidea: Noctuidae). MITOCHONDRIAL DNA PART B-RESOURCES 2018; 3:474-475. [PMID: 33474209 PMCID: PMC7800225 DOI: 10.1080/23802359.2018.1462114] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
Abstract
The complete mitochondrial genome (mitogenome) of Sideridis albicosta is described in this study. The circular molecule is 15,320 bp in length and contains 13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA genes, and one AT-rich region. Thirteen PCGs is 11,252 bp in total, encoding 3723 amino acids. All PCGs start with ATN, except for COI gene starting with CGA; 10 of the 13 PCGs use the typical stop codon TAA, whereas COI, COII, and ND4 stop with a single T. The rrnL and rrnS genes are 1377 bp and 783 bp in length, respectively. The 328 bp AT-rich region contains several structures characteristic of the lepidopterans. New phylogenetic analyses upon mitogenomics would provide us further insights on the taxonomy and phylogeny of Noctuoidea.
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Affiliation(s)
- Shun Yao
- Laboratory of Molecular Evolution and Biodiversity, College of Life Sciences, Anhui Normal University, Wuhu, PR China
| | - Zi-Hui Wang
- Laboratory of Molecular Evolution and Biodiversity, College of Life Sciences, Anhui Normal University, Wuhu, PR China
| | - Xiao-Yue Zhu
- Laboratory of Molecular Evolution and Biodiversity, College of Life Sciences, Anhui Normal University, Wuhu, PR China
| | - Jia-Sheng Hao
- Laboratory of Molecular Evolution and Biodiversity, College of Life Sciences, Anhui Normal University, Wuhu, PR China
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22
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Diel behavior in moths and butterflies: a synthesis of data illuminates the evolution of temporal activity. ORG DIVERS EVOL 2017. [DOI: 10.1007/s13127-017-0350-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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23
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Basso A, Negrisolo E, Zilli A, Battisti A, Cerretti P. A total evidence phylogeny for the processionary moths of the genus Thaumetopoea (Lepidoptera: Notodontidae: Thaumetopoeinae). Cladistics 2017; 33:557-573. [PMID: 34724760 DOI: 10.1111/cla.12181] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/12/2016] [Indexed: 11/30/2022] Open
Abstract
Processionary moths belong to a group of about 100 species well known for their social behaviour and their urticating systems. The genus Thaumetopoea s.l. includes about 15 species and has been divided into three genera (Helianthocampa, Thaumetopoea s.s., and Traumatocampa) in the last revision, based on key morphological features of the adults and on the host plants of the larvae. We performed a total evidence approach to resolve the phylogeny of the genus Thaumetopoea s.l., analysing all valid taxa included in this group, plus a broad array of close relatives. Thaumetopoea was monophyletic and supported by several apomorphies. Further subclades corroborated by synapomorphies were identified. Our phylogeny suggests that Thaumetopoea must be regarded as a single genus. The mapping of key life history traits on the total evidence tree allowed us to sketch a plausible identikit of the Thaumetopoea ancestor and to track the evolution of the genus. The ancestor originated in the eastern Mediterranean area, and used broadleaved host plants. Subsequently, a switch to conifers occurred, just once, in a large subclade. The ancestor pupated in the soil, like several current species, but in a few taxa this trait was lost, together with the related morphological adaptations.
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Affiliation(s)
- Andrea Basso
- Department of Agronomy Food Natural Resources Animals and Environment (DAFNAE), University of Padua, Agripolis, 35020, Legnaro, Padua, Italy
| | - Enrico Negrisolo
- Department of Comparative Biomedicine and Food Science (BCA), University of Padua, Agripolis, 35020, Legnaro, Padua, Italy
| | - Alberto Zilli
- Division Insects, Department Life Sciences, Natural History Museum, Cromwell Road, London, SW7 5BD, UK
| | - Andrea Battisti
- Department of Agronomy Food Natural Resources Animals and Environment (DAFNAE), University of Padua, Agripolis, 35020, Legnaro, Padua, Italy
| | - Pierfilippo Cerretti
- Department of Biology and Biotechnologies 'Charles Darwin', Sapienza University of Rome, Piazzale A. Moro 5, 00185, Rome, Italy
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Abstract
Until recently, deep-level phylogeny in Lepidoptera, the largest single radiation of plant-feeding insects, was very poorly understood. Over the past two decades, building on a preceding era of morphological cladistic studies, molecular data have yielded robust initial estimates of relationships both within and among the ∼43 superfamilies, with unsolved problems now yielding to much larger data sets from high-throughput sequencing. Here we summarize progress on lepidopteran phylogeny since 1975, emphasizing the superfamily level, and discuss some resulting advances in our understanding of lepidopteran evolution.
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Affiliation(s)
- Charles Mitter
- Department of Entomology, University of Maryland, College Park, Maryland 20742;
| | - Donald R Davis
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20560
| | - Michael P Cummings
- Laboratory of Molecular Evolution, Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland 20742
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Jiang N, Li X, Hausmann A, Cheng R, Xue D, Han H. A molecular phylogeny of the Palaearctic and Oriental members of the tribe Boarmiini (Lepidoptera : Geometridae : Ennominae). INVERTEBR SYST 2017. [DOI: 10.1071/is17005] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Owing to the high species diversity and the lack of a modern revision, the phylogenetic relationships within the tribe Boarmiini remain largely unexplored. In this study, we reconstruct the first molecular phylogeny of the Palaearctic and Oriental members of Boarmiini, and infer the relationships among tribes within the ‘boarmiine’ lineage. One mitochondrial (COI) and four nuclear (EF-1α, CAD, RpS5, GAPDH) genes for 56 genera and 96 species of Boarmiini mostly from the Palaearctic and Oriental regions were included in the study. Analyses of Bayesian inference and maximum likelihood recovered largely congruent results. The monophyly of Boarmiini is supported by our results. Seven clades and seven subclades within Boarmiini were found. The molecular results coupled with morphological studies suggested the synonymisation of Zanclopera Warren, 1894, syn. nov. with Krananda Moore, 1868. The following new combinations are proposed: Krananda straminearia (Leech, 1897) (comb. nov.), Krananda falcata (Warren, 1894) (comb. nov.), and Krananda fulva (Yazaki, 1994) (comb. nov.). Our results also supported the monophyly of the ‘boarmiine’ lineage. Boarmiini were recovered as sister to the remaining taxa within the ‘boarmiine’ lineage, and Macariini were recovered as sister to Abraxini, Eutoeini and Cassymini.
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Heikkilä M, Mutanen M, Wahlberg N, Sihvonen P, Kaila L. Elusive ditrysian phylogeny: an account of combining systematized morphology with molecular data (Lepidoptera). BMC Evol Biol 2015; 15:260. [PMID: 26589618 PMCID: PMC4654798 DOI: 10.1186/s12862-015-0520-0] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2015] [Accepted: 10/26/2015] [Indexed: 11/21/2022] Open
Abstract
BACKGROUND Ditrysia comprise close to 99 % of all butterflies and moths. The evolutionary relationships among the ditrysian superfamilies have received considerable attention in phylogenetic studies based on DNA and transcriptomic data, but the deepest divergences remain for large parts unresolved or contradictory. To obtain complementary insight into the evolutionary history of the clade, and to test previous hypotheses on the subdivision of Ditrysia based on morphology, we examine the morphology of larvae, pupae and adult males and females of 318 taxa representing nearly all ditrysian superfamilies and families. We present the most comprehensive morphological dataset on Ditrysia to date, consisting of over 500 morphological characters. The data are analyzed alone and combined with sequence data (one mitochondrial and seven nuclear protein-coding gene regions, sequenced from 422 taxa). The full dataset consists of 473 exemplar species. Analyses are performed using maximum likelihood methods, and parsimony methods for the morphological dataset. We explore whether combining morphological data and DNA-data can stabilize taxa that are unstable in phylogenetic studies based on genetic data only. RESULTS Morphological characters are found phylogenetically informative in resolving apical nodes (superfamilies and families), but characters serving as evidence of relatedness of larger assemblages are few. Results include the recovery of a monophyletic Tineoidea, Sesioidea and Cossoidea, and a stable position for some unstable taxa (e.g. Epipyropidae, Cyclotornidae, Urodoidea + Schreckensteinioidea). Several such taxa, however, remain unstable even though morphological characters indicate a position in the tree (e.g. Immidae). Evidence supporting affinities between clades are suggested, e.g. a novel larval synapomorphy for Tineidae. We also propose the synonymy of Tineodidae with Alucitidae, syn. nov. CONCLUSIONS The large morphological dataset provides information on the diversity and distribution of morphological traits in Ditrysia, and can be used in future research on the evolution of these traits, in identification keys and in identification of fossil Lepidoptera. The "backbone" of the phylogeny for Ditrysia remains largely unresolved. As previously proposed as an explanation for the scarcity of molecular signal in resolving the deeper nodes, this may be due to the rapid radiation of Ditrysia in the Cretaceous.
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Affiliation(s)
- Maria Heikkilä
- Finnish Museum of Natural History, Zoology Unit, University of Helsinki, PO Box 17, Helsinki, 00014, Finland.
| | - Marko Mutanen
- Department of Genetics and Physiology, University of Oulu, PO Box 3000, Oulu, 90014, Finland.
| | - Niklas Wahlberg
- Laboratory of Genetics, Department of Biology, University of Turku, Turku, 20014, Finland.
- Department of Biology, Lund University, 223 62, Lund, Sweden.
| | - Pasi Sihvonen
- University of Helsinki, Research Affairs, PO Box 33, Helsinki, 00014, Finland.
| | - Lauri Kaila
- Finnish Museum of Natural History, Zoology Unit, University of Helsinki, PO Box 17, Helsinki, 00014, Finland.
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27
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Lafontaine JD, Schmidt BC. Additions and corrections to the check list of the Noctuoidea (Insecta, Lepidoptera) of North America north of Mexico III. Zookeys 2015:127-47. [PMID: 26692790 PMCID: PMC4668890 DOI: 10.3897/zookeys.527.6151] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2015] [Accepted: 09/10/2015] [Indexed: 11/21/2022] Open
Abstract
A total of 124 additions and corrections are listed and discussed for the check list of the Noctuoidea of North America north of Mexico published in 2010. Twenty-eight species are added to the list, 16 through new species descriptions, eight as a result of taxonomic splits, and four based on newly recorded species. Forty-eight species are deleted from the list, 41 through synonymy, and seven that were based on misidentifications. Twelve changes are corrections in the spelling of names, or changes in parentheses on dates of publication. Twenty-seven are changes in taxonomy of names where no species are added or deleted; eight changes involve the renumbering of existing species for better taxonomic arrangement. Within the text 2 stat. n., 10 stat. rev., 27 syn. n., 5 syn. rev., and 1 comb. n. are proposed for the first time.
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Affiliation(s)
- J Donald Lafontaine
- Canadian National Collection of Insects, Arachnids, and Nematodes, Biodiversity Program, Agriculture and Agri-Food Canada, K.W. Neatby Bldg., 960 Carling Ave., Ottawa, Ontario, Canada K1A 0C6
| | - B Christian Schmidt
- Canadian National Collection of Insects, Arachnids, and Nematodes, Biodiversity Program, Agriculture and Agri-Food Canada, K.W. Neatby Bldg., 960 Carling Ave., Ottawa, Ontario, Canada K1A 0C6
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Berardi L, Battisti A, Negrisolo E. The allergenic protein Tha p 2 of processionary moths of the genus Thaumetopoea (Thaumetopoeinae, Notodontidae, Lepidoptera): Characterization and evolution. Gene 2015; 574:317-24. [PMID: 26275941 DOI: 10.1016/j.gene.2015.08.019] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2015] [Revised: 06/16/2015] [Accepted: 08/10/2015] [Indexed: 12/24/2022]
Abstract
The allergenic Tha p 2 protein has been extracted recently from the urticating setae of the pine processionary moth Thaumetopoea pityocampa. In the present paper, we test for the occurrence of this protein in other Thaumetopoeinae, with a particular focus on members of the genus Thaumetopoea, as well as unrelated moth species, to better understand the physicochemical properties of the protein, the nature of encoding genes and their evolutionary history. Tha p 2 is encoded by the intronless gene Tha p 2 that is restricted to the processionary moths (Thaumetopoeinae, Notodontidae, Lepidoptera). Most of the species present two isoforms of Tha p 2 that can be interpreted as the result of heterozygosity in the single gene. The only exception is represented by Thaumetopoea wilkinsoni, in which 20 different isoforms occur in a single specimen, leading to the conclusion that, at least in this species, multiple copies of Tha p 2 exist. Serine, glycine, cysteine and leucine are abundant in Tha p 2, a protein well conserved among processionary moths. The predicted secondary structures of Tha p 2 indicate the presence of 3 α-helices and six β-barrels. Finally, the evolution of the gene and the protein was characterized by a combination of positive and negative selection, with the latter being more evident.
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Affiliation(s)
- Laura Berardi
- Department of Agronomy Food Natural Resources Animals and Environment (DAFNAE), University of Padova, Agripolis, 35020 Legnaro, PD, Italy.
| | - Andrea Battisti
- Department of Agronomy Food Natural Resources Animals and Environment (DAFNAE), University of Padova, Agripolis, 35020 Legnaro, PD, Italy.
| | - Enrico Negrisolo
- Department of Comparative Biomedicine and Food Science (BCA), University of Padova, Agripolis, 35020 Legnaro, PD, Italy.
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Yuan ML, Zhang QL, Wang ZF, Guo ZL, Bao GS. Molecular Phylogeny of Grassland Caterpillars (Lepidoptera: Lymantriinae: Gynaephora) Endemic to the Qinghai-Tibetan Plateau. PLoS One 2015; 10:e0127257. [PMID: 26053874 PMCID: PMC4459697 DOI: 10.1371/journal.pone.0127257] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2014] [Accepted: 04/14/2015] [Indexed: 11/19/2022] Open
Abstract
Gynaephora (Lepidoptera Erebidae: Lymantriinae) is a small genus, consisting of 15 nominated species, of which eight species are endemic to the Qinghai-Tibetan Plateau (QTP). In this study, we employed both mitochondrial and nuclear loci to infer a molecular phylogeny for the eight QTP Gynaephora spp. We used the phylogeny to estimate divergence dates in a molecular dating analysis and to delimit species. This information allowed us to investigate associations between the diversification history of the eight QTP species and geological and climatic events. Phylogenetic analyses indicated that the eight QTP species formed a monophyletic group with strong supports in both Bayesian and maximum likelihood analyses. The low K2P genetic distances between the eight QTP species suggested that diversification occurred relatively quickly and recently. Out of the eight species, five species were highly supported as monophyletic, which were also recovered by species delimitation analyses. Samples of the remaining three species (G. aureata, G. rouergensis, and G. minora) mixed together, suggesting that further studies using extensive population sampling and comprehensive morphological approaches are necessary to clarify their species status. Divergence time estimation results demonstrated that the diversification and speciation of Gynaephora on the QTP began during the late Miocene/early Pliocene and was potentially affected by the QTP uplift and associated climate changes during this time.
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Affiliation(s)
- Ming-Long Yuan
- State Key Laboratory of Grassland Agro-Ecosystems, College of Pastoral Agricultural Science and Technology, Lanzhou University, Lanzhou, Gansu, People's Republic of China
| | - Qi-Lin Zhang
- State Key Laboratory of Grassland Agro-Ecosystems, College of Pastoral Agricultural Science and Technology, Lanzhou University, Lanzhou, Gansu, People's Republic of China
| | - Zhao-Feng Wang
- State Key Laboratory of Grassland Agro-Ecosystems, College of Pastoral Agricultural Science and Technology, Lanzhou University, Lanzhou, Gansu, People's Republic of China
| | - Zhong-Long Guo
- State Key Laboratory of Grassland Agro-Ecosystems, College of Pastoral Agricultural Science and Technology, Lanzhou University, Lanzhou, Gansu, People's Republic of China
| | - Gen-Sheng Bao
- State Key Laboratory of Grassland Agro-Ecosystems, College of Pastoral Agricultural Science and Technology, Lanzhou University, Lanzhou, Gansu, People's Republic of China
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30
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A mitochondrial genome phylogeny of owlet moths (Lepidoptera: Noctuoidea), and examination of the utility of mitochondrial genomes for lepidopteran phylogenetics. Mol Phylogenet Evol 2015; 85:230-7. [DOI: 10.1016/j.ympev.2015.02.005] [Citation(s) in RCA: 64] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2014] [Revised: 01/27/2015] [Accepted: 02/06/2015] [Indexed: 11/17/2022]
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Wang H, Wahlberg N, Holloway JD, Bergsten J, Fan X, Janzen DH, Hallwachs W, Wen L, Wang M, Nylin S. Molecular phylogeny of Lymantriinae (Lepidoptera, Noctuoidea, Erebidae) inferred from eight gene regions. Cladistics 2015; 31:579-592. [DOI: 10.1111/cla.12108] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/28/2014] [Indexed: 11/28/2022] Open
Affiliation(s)
- Houshuai Wang
- Department of Entomology; College of Natural Resources & Environment; South China Agricultural University; 510642 Guangzhou China
- Department of Zoology; University of Stockholm; SE-10691 Stockholm Sweden
| | - Niklas Wahlberg
- Department of Biology; Laboratory of Genetics; University of Turku; 2014 Turku Finland
| | - Jeremy D. Holloway
- Department of Life Sciences; Natural History Museum; Cromwell Road London SW7 5BD UK
| | - Johannes Bergsten
- Department of Zoology; Swedish Museum of Natural History; SE-10405 Stockholm Sweden
| | - Xiaoling Fan
- Department of Entomology; College of Natural Resources & Environment; South China Agricultural University; 510642 Guangzhou China
| | - Daniel H. Janzen
- Department of Biology; University of Pennsylvania; Philadelphia PA 19104 USA
| | - Winnie Hallwachs
- Department of Biology; University of Pennsylvania; Philadelphia PA 19104 USA
| | - Lijun Wen
- Department of Entomology; College of Natural Resources & Environment; South China Agricultural University; 510642 Guangzhou China
| | - Min Wang
- Department of Entomology; College of Natural Resources & Environment; South China Agricultural University; 510642 Guangzhou China
| | - Sӧren Nylin
- Department of Zoology; University of Stockholm; SE-10691 Stockholm Sweden
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32
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Przybyłowicz Ł, Tarcz S. Strong sexual dimorphism unraveled by DNA analysis - towards a better understanding ofPseudothyretesclassification (Lepidoptera: Erebidae: Arctiinae). Zool J Linn Soc 2015. [DOI: 10.1111/zoj.12198] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Łukasz Przybyłowicz
- Institute of Systematics and Evolution of Animals; Polish Academy of Sciences; Sławkowska 17 31-016 Kraków Poland
| | - Sebastian Tarcz
- Institute of Systematics and Evolution of Animals; Polish Academy of Sciences; Sławkowska 17 31-016 Kraków Poland
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Végvári Z, Juhász E, Tóth JP, Barta Z, Boldogh S, Szabó S, Varga Z. Life-history traits and climatic responsiveness in noctuid moths. OIKOS 2014. [DOI: 10.1111/oik.01655] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Zsolt Végvári
- Dept of Conservation Zoology; Hortobágy National Park Directorate, Univ. of Debrecen; HU-4024 Debrecen Sumen u.2 Hungary
| | - Edit Juhász
- Dept of Evolutionary Zoology and Human Biology; Univ. of Debrecen; HU-4032 Debrecen Egyetem tér 1. Hungary
| | - János Pál Tóth
- Res. Inst. for Viticulture and Oenology, Tarcal; Könyves Kálmán Street 54. Tarcal HU-3915 Hungary
| | - Zoltán Barta
- MTA-DE “Lendület” Behavioural Ecology Research Group, Dept of Evolutionary Zoology; Univ. of Debrecen; Hu-4032 Debrecen Egyetem tér 1. Hungary
| | - Sándor Boldogh
- Aggtelek National Park Directorate; HU-3758 Jósvafő, Tengerszem oldal. 1. Hungary
| | - Sándor Szabó
- Dept of Evolutionary Zoology and Human Biology; Univ. of Debrecen; HU-4032 Debrecen Egyetem tér 1. Hungary
| | - Zoltán Varga
- Dept of Evolutionary Zoology and Human Biology; Univ. of Debrecen; HU-4032 Debrecen Egyetem tér 1. Hungary
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Schmidt BC, Anweiler GG. Taxonomy and biogeography of the Nearctic Raphia Hübner (Lepidoptera, Noctuidae, Raphiinae). Zookeys 2014:91-113. [PMID: 25061381 PMCID: PMC4109472 DOI: 10.3897/zookeys.421.7517] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2014] [Accepted: 04/19/2014] [Indexed: 11/12/2022] Open
Abstract
The taxonomic status and biogeography of the North American Raphia species is reviewed using adult morphology, larval host plants, geographic phenotypic variation, and variation of mtDNA COI barcode sequences. Lack of diagnostic morphological differences, combined with relatively low mtDNA barcode divergences and clinal phenotypic variation in key geographic regions indicate that the six previously recognized species of North American Raphia are best interpreted as parapatric subspecies. Raphia frater abrupta Grote, stat. n., R. f. coloradensis Putnam-Cramer, stat. r., R. f. piazzi Hill, stat. n., and R. f. elbea Smith, stat. n., are accordingly revised to subspecies of R. frater Grote. Type locality restrictions are provided for Raphia abrupta and Raphia frater and a neotype is designated for Raphia frater var. coloradensis.
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Affiliation(s)
- B Christian Schmidt
- Canadian Food Inspection Agency, Canadian National Collection of Insects, Arachnids and Nematodes, K.W. Neatby Bldg., 960 Carling Ave., Ottawa, ON, Canada K1A 0C6
| | - Gary G Anweiler
- E.H. Strickland Entomological Museum, 218 Earth Sciences Building, Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada, T6G 2E9
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Schmidt BC, Wagner DL, Zacharczenko BV, Zahiri R, Anweiler GG. Polyphyly of Lichen-cryptic Dagger Moths: synonymy of Agriopodes Hampson and description of a new basal acronictine genus, Chloronycta, gen. n. (Lepidoptera, Noctuidae). Zookeys 2014; 421:115-37. [PMID: 25061382 PMCID: PMC4109473 DOI: 10.3897/zookeys.421.7424] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2014] [Accepted: 05/02/2014] [Indexed: 11/12/2022] Open
Abstract
The taxonomic composition and systematic position of Agriopodes Hampson is examined through an integrated approach using adult and larval morphology, biology, and molecular sequence data. The type-species of Agriopodes, Moma fallax Herrich-Schäffer is shown to be derived within the Acronicta grisea Walker species-group; accordingly, Agriopodes is relegated to synonymy under Acronicta Ochsenheimer, syn. n. (Acronictinae). Additionally, molecular markers and morphology show that Agriopodes is not monophyletic: Agriopodes tybo (Barnes) is not closely related to A. fallax nor to Acronicta, and is transferred to a new genus, Chloronycta Schmidt & Anweiler, gen. n. The immature stages of Chloronycta tybo comb. n. are described and illustrated for the first time. Although previously treated as a valid species, we show that Agriopodes geminata (Smith) represents the northern terminus of clinal variation in wing pattern of A. fallax and synonymize A. geminata under A. fallax (syn. n.). The history and identity of Agriopodes corticosa (Boisduval), a nomen dubium, is discussed.
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Affiliation(s)
- B. Christian Schmidt
- Canadian Food Inspection Agency, Canadian National Collection of Insects, Arachnids, and Nematodes, K.W. Neatby Bldg., 960 Carling Ave., Ottawa, ON, Canada K1A 0C6
| | - David L. Wagner
- Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT 06269
| | | | - Reza Zahiri
- Biodiversity Institute of Ontario, University of Guelph, Guelph, Ontario, Canada
| | - Gary G. Anweiler
- E.H. Strickland Entomological Museum, 218 Earth Sciences Building, Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada, T6G 2E9
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36
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Timmermans MJTN, Lees DC, Simonsen TJ. Towards a mitogenomic phylogeny of Lepidoptera. Mol Phylogenet Evol 2014; 79:169-78. [PMID: 24910155 DOI: 10.1016/j.ympev.2014.05.031] [Citation(s) in RCA: 134] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2014] [Revised: 05/11/2014] [Accepted: 05/26/2014] [Indexed: 10/25/2022]
Abstract
The backbone phylogeny of Lepidoptera remains unresolved, despite strenuous recent morphological and molecular efforts. Molecular studies have focused on nuclear protein coding genes, sometimes adding a single mitochondrial gene. Recent advances in sequencing technology have, however, made acquisition of entire mitochondrial genomes both practical and economically viable. Prior phylogenetic studies utilised just eight of 43 currently recognised lepidopteran superfamilies. Here, we add 23 full and six partial mitochondrial genomes (comprising 22 superfamilies of which 16 are newly represented) to those publically available for a total of 24 superfamilies and ask whether such a sample can resolve deeper lepidopteran phylogeny. Using recoded datasets we obtain topologies that are highly congruent with prior nuclear and/or morphological studies. Our study shows support for an expanded Obtectomera including Gelechioidea, Thyridoidea, plume moths (Alucitoidea and Pterophoroidea; possibly along with Epermenioidea), Papilionoidea, Pyraloidea, Mimallonoidea and Macroheterocera. Regarding other controversially positioned higher taxa, Doidae is supported within the new concept of Drepanoidea and Mimallonidae sister to (or part of) Macroheterocera, while among Nymphalidae butterflies, Danainae and not Libytheinae are sister to the remainder of the family. At the deepest level, we suggest that a tRNA rearrangement occurred at a node between Adeloidea and Ditrysia+Palaephatidae+Tischeriidae.
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Affiliation(s)
- Martijn J T N Timmermans
- Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD, United Kingdom; Department of Life Sciences, Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom.
| | - David C Lees
- Department of Zoology, Cambridge University, Downing Street CB2 3EJ, United Kingdom.
| | - Thomas J Simonsen
- Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD, United Kingdom.
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37
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Yang F, Shi ZY, Bai SL, Ward RD, Zhang AB. Comparative studies on species identification of Noctuoidea moths in two nature reserve conservation zones (Beijing, China) using DNA barcodes and thin-film biosensor chips. Mol Ecol Resour 2013; 14:50-9. [PMID: 24103324 DOI: 10.1111/1755-0998.12165] [Citation(s) in RCA: 82] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2013] [Revised: 08/21/2013] [Accepted: 08/22/2013] [Indexed: 11/30/2022]
Abstract
Rapid and accurate identification of species is required for the biological control of pest Noctuoidea moths. DNA barcodes and thin-film biosensor chips are two molecular approaches that have gained wide attention. Here, we compare these two methods for the identification of a limited number of Noctuoidea moth species. Based on the commonly used mitochondrial gene cytochrome c oxidase I (the standard DNA barcode for animal species), 14 probes were designed and synthesized for 14 species shared by two national nature reserves in Beijing and Hebei, China. Probes ranged in length from 18 to 27 bp and were designed as mismatch probes to guarantee that there were at least three base differences between the probe and nontarget sequences. The results on the chip could be detected by the naked eye without needing special equipment. No cross-hybridizations were detected although we tested all probes on the 14 target and 24 nontarget Noctuoidea species. The neighbour-joining tree of the 38 species based on COI sequences gave 38 highly supported independent groups. Both DNA barcoding and thin-film biosensor chips, based on the COI gene, are able to accurately identify and discriminate the 14 targeted moth species in this study. Because of its speed, high accuracy and low cost, the thin-film biosensor chip is a very practical means of species identification. Now, a more comprehensive chip will be developed for the identification of additional Noctuoidea moths for pest control and ecological protection.
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Affiliation(s)
- F Yang
- College of Life Sciences, Capital Normal University, Beijing, 100048, China
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