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Zinos A, Wagner JC, Beardsley SA, Chen WL, Conant L, Malloy M, Heffernan J, Quirk B, Prost R, Maheshwari M, Sugar J, Whelan HT. Spatial correspondence of cortical activity measured with whole head fNIRS and fMRI: Toward clinical use within subject. Neuroimage 2024; 290:120569. [PMID: 38461959 DOI: 10.1016/j.neuroimage.2024.120569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 12/15/2023] [Accepted: 03/07/2024] [Indexed: 03/12/2024] Open
Abstract
Functional near infrared spectroscopy (fNIRS) and functional magnetic resonance imaging (fMRI) both measure the hemodynamic response, and so both imaging modalities are expected to have a strong correspondence in regions of cortex adjacent to the scalp. To assess whether fNIRS can be used clinically in a manner similar to fMRI, 22 healthy adult participants underwent same-day fMRI and whole-head fNIRS testing while they performed separate motor (finger tapping) and visual (flashing checkerboard) tasks. Analyses were conducted within and across subjects for each imaging approach, and regions of significant task-related activity were compared on the cortical surface. The spatial correspondence between fNIRS and fMRI detection of task-related activity was good in terms of true positive rate, with fNIRS overlap of up to 68 % of the fMRI for analyses across subjects (group analysis) and an average overlap of up to 47.25 % for individual analyses within subject. At the group level, the positive predictive value of fNIRS was 51 % relative to fMRI. The positive predictive value for within subject analyses was lower (41.5 %), reflecting the presence of significant fNIRS activity in regions without significant fMRI activity. This could reflect task-correlated sources of physiologic noise and/or differences in the sensitivity of fNIRS and fMRI measures to changes in separate (vs. combined) measures of oxy and de-oxyhemoglobin. The results suggest whole-head fNIRS as a noninvasive imaging modality with promising clinical utility for the functional assessment of brain activity in superficial regions of cortex physically adjacent to the skull.
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Affiliation(s)
- Anthony Zinos
- Department of Biomedical Engineering, Marquette University and Medical College of Wisconsin, Milwaukee, WI, USA
| | - Julie C Wagner
- Department of Biomedical Engineering, Marquette University and Medical College of Wisconsin, Milwaukee, WI, USA
| | - Scott A Beardsley
- Department of Biomedical Engineering, Marquette University and Medical College of Wisconsin, Milwaukee, WI, USA; Department of Neurology, Medical College of Wisconsin, Milwaukee, WI, USA.
| | - Wei-Liang Chen
- Center for Neuroscience Research, Children's National Medical Center, George Washington University, Washington DC, USA
| | - Lisa Conant
- Department of Neurology, Medical College of Wisconsin, Milwaukee, WI, USA
| | - Marsha Malloy
- Department of Neurology, Medical College of Wisconsin, Milwaukee, WI, USA; Department of Neurology, Children's Wisconsin, Milwaukee, WI, USA
| | - Joseph Heffernan
- Department of Neurology, Medical College of Wisconsin, Milwaukee, WI, USA
| | - Brendan Quirk
- Department of Neurology, Medical College of Wisconsin, Milwaukee, WI, USA
| | - Robert Prost
- Department of Neurology, Medical College of Wisconsin, Milwaukee, WI, USA
| | - Mohit Maheshwari
- Department of Radiology, Children's Wisconsin, Milwaukee, WI, USA
| | - Jeffrey Sugar
- Department of Neurology, Medical College of Wisconsin, Milwaukee, WI, USA
| | - Harry T Whelan
- Department of Neurology, Medical College of Wisconsin, Milwaukee, WI, USA; Department of Neurology, Children's Wisconsin, Milwaukee, WI, USA
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2
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Bonilauri A, Sangiuliano Intra F, Baglio F, Baselli G. Impact of Anatomical Variability on Sensitivity Profile in fNIRS-MRI Integration. SENSORS (BASEL, SWITZERLAND) 2023; 23:2089. [PMID: 36850685 PMCID: PMC9962997 DOI: 10.3390/s23042089] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/23/2022] [Revised: 02/06/2023] [Accepted: 02/07/2023] [Indexed: 06/18/2023]
Abstract
Functional near-infrared spectroscopy (fNIRS) is an important non-invasive technique used to monitor cortical activity. However, a varying sensitivity of surface channels vs. cortical structures may suggest integrating the fNIRS with the subject-specific anatomy (SSA) obtained from routine MRI. Actual processing tools permit the computation of the SSA forward problem (i.e., cortex to channel sensitivity) and next, a regularized solution of the inverse problem to map the fNIRS signals onto the cortex. The focus of this study is on the analysis of the forward problem to quantify the effect of inter-subject variability. Thirteen young adults (six males, seven females, age 29.3 ± 4.3) underwent both an MRI scan and a motor grasping task with a continuous wave fNIRS system of 102 measurement channels with optodes placed according to a 10/5 system. The fNIRS sensitivity profile was estimated using Monte Carlo simulations on each SSA and on three major atlases (i.e., Colin27, ICBM152 and FSAverage) for comparison. In each SSA, the average sensitivity curves were obtained by aligning the 102 channels and segmenting them by depth quartiles. The first quartile (depth < 11.8 (0.7) mm, median (IQR)) covered 0.391 (0.087)% of the total sensitivity profile, while the second one (depth < 13.6 (0.7) mm) covered 0.292 (0.009)%, hence indicating that about 70% of the signal was from the gyri. The sensitivity bell-shape was broad in the source-detector direction (20.953 (5.379) mm FWHM, first depth quartile) and steeper in the transversal one (6.082 (2.086) mm). The sensitivity of channels vs. different cortical areas based on SSA were analyzed finding high dispersions among subjects and large differences with atlas-based evaluations. Moreover, the inverse cortical mapping for the grasping task showed differences between SSA and atlas based solutions. In conclusion, integration with MRI SSA can significantly improve fNIRS interpretation.
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Affiliation(s)
- Augusto Bonilauri
- Department of Electronics, Information and Bioengineering, Politecnico di Milano, 20133 Milan, Italy
| | | | - Francesca Baglio
- IRCCS Fondazione Don Carlo Gnocchi ONLUS, CADITER, 20148 Milan, Italy
| | - Giuseppe Baselli
- Department of Electronics, Information and Bioengineering, Politecnico di Milano, 20133 Milan, Italy
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3
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Cai Z, Pellegrino G, Lina J, Benali H, Grova C. Hierarchical Bayesian modeling of the relationship between task-related hemodynamic responses and cortical excitability. Hum Brain Mapp 2022; 44:876-900. [PMID: 36250709 PMCID: PMC9875942 DOI: 10.1002/hbm.26107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Revised: 09/10/2022] [Accepted: 09/18/2022] [Indexed: 01/28/2023] Open
Abstract
Investigating the relationship between task-related hemodynamic responses and cortical excitability is challenging because it requires simultaneous measurement of hemodynamic responses while applying noninvasive brain stimulation. Moreover, cortical excitability and task-related hemodynamic responses are both associated with inter-/intra-subject variability. To reliably assess such a relationship, we applied hierarchical Bayesian modeling. This study involved 16 healthy subjects who underwent simultaneous Paired Associative Stimulation (PAS10, PAS25, Sham) while monitoring brain activity using functional Near-Infrared Spectroscopy (fNIRS), targeting the primary motor cortex (M1). Cortical excitability was measured by Motor Evoked Potentials (MEPs), and the motor task-related hemodynamic responses were measured using fNIRS 3D reconstructions. We constructed three models to investigate: (1) PAS effects on the M1 excitability, (2) PAS effects on fNIRS hemodynamic responses to a finger tapping task, and (3) the correlation between PAS effects on M1 excitability and PAS effects on task-related hemodynamic responses. Significant increase in cortical excitability was found following PAS25, whereas a small reduction of the cortical excitability was shown after PAS10 and a subtle increase occurred after sham. Both HbO and HbR absolute amplitudes increased after PAS25 and decreased after PAS10. The probability of the positive correlation between modulation of cortical excitability and hemodynamic activity was 0.77 for HbO and 0.79 for HbR. We demonstrated that PAS stimulation modulates task-related cortical hemodynamic responses in addition to M1 excitability. Moreover, the positive correlation between PAS modulations of excitability and hemodynamics brought insight into understanding the fundamental properties of cortical function and cortical excitability.
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Affiliation(s)
- Zhengchen Cai
- Multimodal Functional Imaging Lab, Department of PhysicsConcordia UniversityMontréalQuébecCanada,PERFORM CentreConcordia UniversityMontréalQuébecCanada
| | - Giovanni Pellegrino
- Epilepsy Program, Schulich School of Medicine and DentistryWestern UniversityLondonOntarioCanada,Multimodal Functional Imaging Lab, Biomedical Engineering DepartmentMcGill UniversityMontréalQuébecCanada
| | - Jean‐Marc Lina
- Département de Génie ElectriqueÉcole de Technologie SupérieureMontréalQuébecCanada,Centre De Recherches En MathématiquesMontréalQuébecCanada
| | - Habib Benali
- PERFORM CentreConcordia UniversityMontréalQuébecCanada,Centre De Recherches En MathématiquesMontréalQuébecCanada,Electrical and Computer Engineering Department, Concordia UniversityMontréalCanada
| | - Christophe Grova
- Multimodal Functional Imaging Lab, Department of PhysicsConcordia UniversityMontréalQuébecCanada,PERFORM CentreConcordia UniversityMontréalQuébecCanada,Multimodal Functional Imaging Lab, Biomedical Engineering DepartmentMcGill UniversityMontréalQuébecCanada,Centre De Recherches En MathématiquesMontréalQuébecCanada
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4
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Cai Z, Machado A, Chowdhury RA, Spilkin A, Vincent T, Aydin Ü, Pellegrino G, Lina JM, Grova C. Diffuse optical reconstructions of functional near infrared spectroscopy data using maximum entropy on the mean. Sci Rep 2022; 12:2316. [PMID: 35145148 PMCID: PMC8831678 DOI: 10.1038/s41598-022-06082-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2021] [Accepted: 01/24/2022] [Indexed: 02/07/2023] Open
Abstract
Functional near-infrared spectroscopy (fNIRS) measures the hemoglobin concentration changes associated with neuronal activity. Diffuse optical tomography (DOT) consists of reconstructing the optical density changes measured from scalp channels to the oxy-/deoxy-hemoglobin concentration changes within the cortical regions. In the present study, we adapted a nonlinear source localization method developed and validated in the context of Electro- and Magneto-Encephalography (EEG/MEG): the Maximum Entropy on the Mean (MEM), to solve the inverse problem of DOT reconstruction. We first introduced depth weighting strategy within the MEM framework for DOT reconstruction to avoid biasing the reconstruction results of DOT towards superficial regions. We also proposed a new initialization of the MEM model improving the temporal accuracy of the original MEM framework. To evaluate MEM performance and compare with widely used depth weighted Minimum Norm Estimate (MNE) inverse solution, we applied a realistic simulation scheme which contained 4000 simulations generated by 250 different seeds at different locations and 4 spatial extents ranging from 3 to 40[Formula: see text] along the cortical surface. Our results showed that overall MEM provided more accurate DOT reconstructions than MNE. Moreover, we found that MEM was remained particularly robust in low signal-to-noise ratio (SNR) conditions. The proposed method was further illustrated by comparing to functional Magnetic Resonance Imaging (fMRI) activation maps, on real data involving finger tapping tasks with two different montages. The results showed that MEM provided more accurate HbO and HbR reconstructions in spatial agreement with the main fMRI cluster, when compared to MNE.
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Affiliation(s)
- Zhengchen Cai
- Department of Physics and PERFORM Centre, Concordia University, Montreal, Canada.
| | - Alexis Machado
- Multimodal Functional Imaging Lab, Biomedical Engineering Department, McGill University, Montreal, Canada
| | - Rasheda Arman Chowdhury
- Multimodal Functional Imaging Lab, Biomedical Engineering Department, McGill University, Montreal, Canada
| | - Amanda Spilkin
- Department of Physics and PERFORM Centre, Concordia University, Montreal, Canada
| | - Thomas Vincent
- Department of Physics and PERFORM Centre, Concordia University, Montreal, Canada
- Neurology and Neurosurgery Department, Montreal Neurological Institute, McGill University, Montreal, Canada
- Centre de médecine préventive et d'activité physique, Montréal Heart Institute, Montréal, Canada
| | - Ümit Aydin
- Department of Physics and PERFORM Centre, Concordia University, Montreal, Canada
- MRC Social, Genetic and Developmental Psychiatry Centre, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK
| | - Giovanni Pellegrino
- Neurology and Neurosurgery Department, Montreal Neurological Institute, McGill University, Montreal, Canada
| | - Jean-Marc Lina
- École de technologie supérieure de l'Université du Québec, Montréal, Canada
- Centre de Recherches Mathématiques, Université de Montréal, Montréal, Canada
| | - Christophe Grova
- Department of Physics and PERFORM Centre, Concordia University, Montreal, Canada
- Multimodal Functional Imaging Lab, Biomedical Engineering Department, McGill University, Montreal, Canada
- Neurology and Neurosurgery Department, Montreal Neurological Institute, McGill University, Montreal, Canada
- Centre de Recherches Mathématiques, Université de Montréal, Montréal, Canada
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5
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Cai Z, Uji M, Aydin Ü, Pellegrino G, Spilkin A, Delaire É, Abdallah C, Lina J, Grova C. Evaluation of a personalized functional near infra-red optical tomography workflow using maximum entropy on the mean. Hum Brain Mapp 2021; 42:4823-4843. [PMID: 34342073 PMCID: PMC8449120 DOI: 10.1002/hbm.25566] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Revised: 05/25/2021] [Accepted: 06/11/2021] [Indexed: 11/20/2022] Open
Abstract
In the present study, we proposed and evaluated a workflow of personalized near infra-red optical tomography (NIROT) using functional near-infrared spectroscopy (fNIRS) for spatiotemporal imaging of cortical hemodynamic fluctuations. The proposed workflow from fNIRS data acquisition to local 3D reconstruction consists of: (a) the personalized optimal montage maximizing fNIRS channel sensitivity to a predefined targeted brain region; (b) the optimized fNIRS data acquisition involving installation of optodes and digitalization of their positions using a neuronavigation system; and (c) the 3D local reconstruction using maximum entropy on the mean (MEM) to accurately estimate the location and spatial extent of fNIRS hemodynamic fluctuations along the cortical surface. The workflow was evaluated on finger-tapping fNIRS data acquired from 10 healthy subjects for whom we estimated the reconstructed NIROT spatiotemporal images and compared with functional magnetic resonance imaging (fMRI) results from the same individuals. Using the fMRI activation maps as our reference, we quantitatively compared the performance of two NIROT approaches, the MEM framework and the conventional minimum norm estimation (MNE) method. Quantitative comparisons were performed at both single subject and group-level. Overall, our results suggested that MEM provided better spatial accuracy than MNE, while both methods offered similar temporal accuracy when reconstructing oxygenated (HbO) and deoxygenated hemoglobin (HbR) concentration changes evoked by finger-tapping. Our proposed complete workflow was made available in the brainstorm fNIRS processing plugin-NIRSTORM, thus providing the opportunity for other researchers to further apply it to other tasks and on larger populations.
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Affiliation(s)
- Zhengchen Cai
- Multimodal Functional Imaging Lab, Department of Physics and PERFORM CentreConcordia UniversityMontréalQuébecCanada
| | - Makoto Uji
- Multimodal Functional Imaging Lab, Department of Physics and PERFORM CentreConcordia UniversityMontréalQuébecCanada
| | - Ümit Aydin
- Multimodal Functional Imaging Lab, Department of Physics and PERFORM CentreConcordia UniversityMontréalQuébecCanada
- Social, Genetic and Developmental Psychiatry CentreInstitute of Psychiatry, Psychology and Neuroscience, King's College LondonLondonUK
| | - Giovanni Pellegrino
- Neurology and Neurosurgery Department, Montreal Neurological InstituteMcGill UniversityMontréalQuébecCanada
- Multimodal Functional Imaging Lab, Biomedical Engineering DepartmentMcGill UniversityMontréalQuébecCanada
| | - Amanda Spilkin
- Multimodal Functional Imaging Lab, Department of Physics and PERFORM CentreConcordia UniversityMontréalQuébecCanada
| | - Édouard Delaire
- Multimodal Functional Imaging Lab, Department of Physics and PERFORM CentreConcordia UniversityMontréalQuébecCanada
| | - Chifaou Abdallah
- Neurology and Neurosurgery Department, Montreal Neurological InstituteMcGill UniversityMontréalQuébecCanada
- Multimodal Functional Imaging Lab, Biomedical Engineering DepartmentMcGill UniversityMontréalQuébecCanada
| | - Jean‐Marc Lina
- Département de Génie ElectriqueÉcole de Technologie SupérieureMontréalQuébecCanada
- Centre De Recherches En MathématiquesMontréalQuébecCanada
| | - Christophe Grova
- Multimodal Functional Imaging Lab, Department of Physics and PERFORM CentreConcordia UniversityMontréalQuébecCanada
- Neurology and Neurosurgery Department, Montreal Neurological InstituteMcGill UniversityMontréalQuébecCanada
- Multimodal Functional Imaging Lab, Biomedical Engineering DepartmentMcGill UniversityMontréalQuébecCanada
- Centre De Recherches En MathématiquesMontréalQuébecCanada
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6
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7
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Zhao Y, Xiao X, Jiang Y, Sun P, Zhang Z, Gong Y, Li Z, Zhu C. Transcranial brain atlas-based optimization for functional near-infrared spectroscopy optode arrangement: Theory, algorithm, and application. Hum Brain Mapp 2021; 42:1657-1669. [PMID: 33332685 PMCID: PMC7978141 DOI: 10.1002/hbm.25318] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2020] [Revised: 11/30/2020] [Accepted: 12/01/2020] [Indexed: 11/23/2022] Open
Abstract
The quality of optode arrangement is crucial for group imaging studies when using functional near-infrared spectroscopy (fNIRS). Previous studies have demonstrated the promising effectiveness of using transcranial brain atlases (TBAs), in a manual and intuition-based way, to guide optode arrangement when individual structural MRI data are unavailable. However, the theoretical basis of using TBA to optimize optode arrangement remains unclear, which leads to manual and subjective application. In this study, we first describe the theoretical basis of TBA-based optimization of optode arrangement using a mathematical framework. Second, based on the theoretical basis, an algorithm is proposed for automatically arranging optodes on a virtual scalp. The resultant montage is placed onto the head of each participant guided by a low-cost and portable navigation system. We compared our method with the widely used 10/20-system-assisted optode arrangement procedure, using finger-tapping and working memory tasks as examples of both low- and high-level cognitive systems. Performance, including optode montage designs, locations on each participant's scalp, brain activation, as well as ground truth indices derived from individual MRI data were evaluated. The results give convergent support for our method's ability to provide more accurate, consistent and efficient optode arrangements for fNIRS group imaging than the 10/20 method.
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Affiliation(s)
- Yang Zhao
- State Key Laboratory of Cognitive Neuroscience and LearningBeijing Normal UniversityBeijingChina
| | - Xiang Xiao
- State Key Laboratory of Cognitive Neuroscience and LearningBeijing Normal UniversityBeijingChina
- Neuroimaging Research Branch, National Institute on Drug AbuseNational Institutes of HealthBaltimoreMarylandUSA
| | - Yi‐Han Jiang
- State Key Laboratory of Cognitive Neuroscience and LearningBeijing Normal UniversityBeijingChina
| | - Pei‐Pei Sun
- State Key Laboratory of Cognitive Neuroscience and LearningBeijing Normal UniversityBeijingChina
| | - Zong Zhang
- State Key Laboratory of Cognitive Neuroscience and LearningBeijing Normal UniversityBeijingChina
| | - Yi‐Long Gong
- State Key Laboratory of Cognitive Neuroscience and LearningBeijing Normal UniversityBeijingChina
| | - Zheng Li
- Center for Cognition and Neuroergonomics, State Key Laboratory of Cognitive Neuroscience and LearningBeijing Normal University at ZhuhaiZhuhaiChina
- IDG/McGovern Institute for Brain ResearchBeijing Normal UniversityBeijingChina
- Center for Collaboration and Innovation in Brain and Learning SciencesBeijing Normal UniversityBeijingChina
| | - Chao‐Zhe Zhu
- State Key Laboratory of Cognitive Neuroscience and LearningBeijing Normal UniversityBeijingChina
- IDG/McGovern Institute for Brain ResearchBeijing Normal UniversityBeijingChina
- Center for Collaboration and Innovation in Brain and Learning SciencesBeijing Normal UniversityBeijingChina
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8
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Benitez-Andonegui A, Lührs M, Nagels-Coune L, Ivanov D, Goebel R, Sorger B. Guiding functional near-infrared spectroscopy optode-layout design using individual (f)MRI data: effects on signal strength. NEUROPHOTONICS 2021; 8:025012. [PMID: 34155480 PMCID: PMC8211086 DOI: 10.1117/1.nph.8.2.025012] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Accepted: 05/11/2021] [Indexed: 05/20/2023]
Abstract
Significance: Designing optode layouts is an essential step for functional near-infrared spectroscopy (fNIRS) experiments as the quality of the measured signal and the sensitivity to cortical regions-of-interest depend on how optodes are arranged on the scalp. This becomes particularly relevant for fNIRS-based brain-computer interfaces (BCIs), where developing robust systems with few optodes is crucial for clinical applications. Aim: Available resources often dictate the approach researchers use for optode-layout design. We investigated whether guiding optode layout design using different amounts of subject-specific magnetic resonance imaging (MRI) data affects the fNIRS signal quality and sensitivity to brain activation when healthy participants perform mental-imagery tasks typically used in fNIRS-BCI experiments. Approach: We compared four approaches that incrementally incorporated subject-specific MRI information while participants performed mental-calculation, mental-rotation, and inner-speech tasks. The literature-based approach (LIT) used a literature review to guide the optode layout design. The probabilistic approach (PROB) employed individual anatomical data and probabilistic maps of functional MRI (fMRI)-activation from an independent dataset. The individual fMRI (iFMRI) approach used individual anatomical and fMRI data, and the fourth approach used individual anatomical, functional, and vascular information of the same subject (fVASC). Results: The four approaches resulted in different optode layouts and the more informed approaches outperformed the minimally informed approach (LIT) in terms of signal quality and sensitivity. Further, PROB, iFMRI, and fVASC approaches resulted in a similar outcome. Conclusions: We conclude that additional individual MRI data lead to a better outcome, but that not all the modalities tested here are required to achieve a robust setup. Finally, we give preliminary advice to efficiently using resources for developing robust optode layouts for BCI and neurofeedback applications.
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Affiliation(s)
- Amaia Benitez-Andonegui
- Maastricht University, Maastricht Brain Imaging Center, Department of Cognitive Neuroscience, Maastricht, The Netherlands
- Maastricht University, Laboratory for Cognitive Robotics and Complex Self-Organizing Systems, Department of Data Science and Knowledge Engineering, Maastricht, The Netherlands
| | - Michael Lührs
- Maastricht University, Maastricht Brain Imaging Center, Department of Cognitive Neuroscience, Maastricht, The Netherlands
- Brain Innovation B.V., Research Department, Maastricht, The Netherlands
| | - Laurien Nagels-Coune
- Maastricht University, Maastricht Brain Imaging Center, Department of Cognitive Neuroscience, Maastricht, The Netherlands
| | - Dimo Ivanov
- Maastricht University, Maastricht Brain Imaging Center, Department of Cognitive Neuroscience, Maastricht, The Netherlands
| | - Rainer Goebel
- Maastricht University, Maastricht Brain Imaging Center, Department of Cognitive Neuroscience, Maastricht, The Netherlands
- Brain Innovation B.V., Research Department, Maastricht, The Netherlands
| | - Bettina Sorger
- Maastricht University, Maastricht Brain Imaging Center, Department of Cognitive Neuroscience, Maastricht, The Netherlands
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9
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Deconvolution of hemodynamic responses along the cortical surface using personalized functional near infrared spectroscopy. Sci Rep 2021; 11:5964. [PMID: 33727581 PMCID: PMC7966407 DOI: 10.1038/s41598-021-85386-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Accepted: 02/26/2021] [Indexed: 11/28/2022] Open
Abstract
In functional near infrared spectroscopy (fNIRS), deconvolution analysis of oxy and deoxy-hemoglobin concentration changes allows estimating specific hemodynamic response functions (HRF) elicited by neuronal activity, taking advantage of the fNIRS excellent temporal resolution. Diffuse optical tomography (DOT) is also becoming the new standard reconstruction procedure as it is more accurate than the modified Beer Lambert law approach at the sensor level. The objective of this study was to assess the relevance of HRF deconvolution after DOT constrained along the cortical surface. We used local personalized fNIRS montages which consists in optimizing the position of fNIRS optodes to ensure maximal sensitivity to subject specific target brain regions. We carefully evaluated the accuracy of deconvolution when applied after DOT, using realistic simulations involving several HRF models at different signal to noise ratio (SNR) levels and on real data related to motor and visual tasks in healthy subjects and from spontaneous pathological activity in one patient with epilepsy. We demonstrated that DOT followed by deconvolution was able to accurately recover a large variability of HRFs over a large range of SNRs. We found good performances of deconvolution analysis for SNR levels usually encountered in our applications and we were able to reconstruct accurately the temporal dynamics of HRFs in real conditions.
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10
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Yücel MA, Lühmann AV, Scholkmann F, Gervain J, Dan I, Ayaz H, Boas D, Cooper RJ, Culver J, Elwell CE, Eggebrecht A, Franceschini MA, Grova C, Homae F, Lesage F, Obrig H, Tachtsidis I, Tak S, Tong Y, Torricelli A, Wabnitz H, Wolf M. Best practices for fNIRS publications. NEUROPHOTONICS 2021; 8:012101. [PMID: 33442557 PMCID: PMC7793571 DOI: 10.1117/1.nph.8.1.012101] [Citation(s) in RCA: 150] [Impact Index Per Article: 50.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Accepted: 12/02/2020] [Indexed: 05/09/2023]
Abstract
The application of functional near-infrared spectroscopy (fNIRS) in the neurosciences has been expanding over the last 40 years. Today, it is addressing a wide range of applications within different populations and utilizes a great variety of experimental paradigms. With the rapid growth and the diversification of research methods, some inconsistencies are appearing in the way in which methods are presented, which can make the interpretation and replication of studies unnecessarily challenging. The Society for Functional Near-Infrared Spectroscopy has thus been motivated to organize a representative (but not exhaustive) group of leaders in the field to build a consensus on the best practices for describing the methods utilized in fNIRS studies. Our paper has been designed to provide guidelines to help enhance the reliability, repeatability, and traceability of reported fNIRS studies and encourage best practices throughout the community. A checklist is provided to guide authors in the preparation of their manuscripts and to assist reviewers when evaluating fNIRS papers.
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Affiliation(s)
- Meryem A. Yücel
- Boston University, Neurophotonics Center, Biomedical Engineering, Boston, Massachusetts, United States
- Massachusetts General Hospital, Harvard Medical School, MGH/HST Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Charlestown, Massachusetts, United States
| | - Alexander v. Lühmann
- Boston University, Neurophotonics Center, Biomedical Engineering, Boston, Massachusetts, United States
- Massachusetts General Hospital, Harvard Medical School, MGH/HST Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Charlestown, Massachusetts, United States
| | - Felix Scholkmann
- University Hospital Zurich, University of Zurich, Department of Neonatology, Biomedical Optics Research Laboratory, Neonatology Research, Zurich, Switzerland
- University of Bern, Institute for Complementary and Integrative Medicine, Bern, Switzerland
| | - Judit Gervain
- Université de Paris, CNRS, Integrative Neuroscience and Cognition Center, Paris, France
- Università di Padova, Department of Social and Developmental Psychology, Padua, Italy
| | - Ippeita Dan
- Chuo University, Faculty of Science and Engineering, Applied Cognitive Neuroscience Laboratory, Tokyo, Japan
| | - Hasan Ayaz
- Drexel University, School of Biomedical Engineering, Science and Health Systems, Philadelphia, Pennsylvania, United States
- Drexel University, College of Arts and Sciences, Department of Psychology, Philadelphia, Pennsylvania, United States
- Drexel University, Drexel Solutions Institute, Philadelphia, Pennsylvania, United States
- University of Pennsylvania, Department of Family and Community Health, Philadelphia, Pennsylvania, United States
- Children’s Hospital of Philadelphia, Center for Injury Research and Prevention, Philadelphia, Pennsylvania, United States
| | - David Boas
- Boston University, Neurophotonics Center, Biomedical Engineering, Boston, Massachusetts, United States
| | - Robert J. Cooper
- University College London, DOT-HUB, Department of Medical Physics and Biomedical Engineering, Biomedical Optics Research Laboratory, London, United Kingdom
| | - Joseph Culver
- Washington University School of Medicine, Department of Radiology, St. Louis, Missouri, United States
| | - Clare E. Elwell
- University College London, Department of Medical Physics and Biomedical Engineering, London, United Kingdom
| | - Adam Eggebrecht
- Washington University School of Medicine, Mallinckrodt Institute of Radiology, St. Louis, Missouri, United States
| | - Maria A. Franceschini
- Massachusetts General Hospital, Harvard Medical School, MGH/HST Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Charlestown, Massachusetts, United States
| | - Christophe Grova
- Concordia University, Department of Physics and PERFORM Centre, Multimodal Functional Imaging Lab, Montreal, Québec, Canada
- McGill University, Biomedical Engineering Department, Multimodal Functional Imaging Lab, Montreal, Québec, Canada
| | - Fumitaka Homae
- Tokyo Metropolitan University, Department of Language Sciences, Tokyo, Japan
| | - Frédéric Lesage
- Polytechnique Montréal, Department Electrical Engineering, Montreal, Canada
| | - Hellmuth Obrig
- University Hospital Leipzig, Max-Planck-Institute for Human Cognitive and Brain Sciences and Clinic for Cognitive Neurology, Leipzig, Germany
| | - Ilias Tachtsidis
- University College London, Department of Medical Physics and Biomedical Engineering, London, United Kingdom
| | - Sungho Tak
- Korea Basic Science Institute, Research Center for Bioconvergence Analysis, Ochang, Cheongju, Republic of Korea
| | - Yunjie Tong
- Weldon School of Biomedical Engineering Purdue University, West Lafayette, Indiana, United States
| | - Alessandro Torricelli
- Politecnico di Milano, Dipartimento di Fisica, Milan, Italy
- Consiglio Nazionale delle Ricerche, Istituto di Fotonica e Nanotecnologie, Milan, Italy
| | | | - Martin Wolf
- University Hospital Zurich, University of Zurich, Department of Neonatology, Biomedical Optics Research Laboratory, Neonatology Research, Zurich, Switzerland
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11
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Cao J, Huppert TJ, Grover P, Kainerstorfer JM. Enhanced spatiotemporal resolution imaging of neuronal activity using joint electroencephalography and diffuse optical tomography. NEUROPHOTONICS 2021; 8:015002. [PMID: 33437847 PMCID: PMC7778454 DOI: 10.1117/1.nph.8.1.015002] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/02/2020] [Accepted: 12/10/2020] [Indexed: 06/12/2023]
Abstract
Significance: Electroencephalography (EEG) and functional near-infrared spectroscopy (fNIRS) are both commonly used methodologies for neuronal source reconstruction. While EEG has high temporal resolution (millisecond-scale), its spatial resolution is on the order of centimeters. On the other hand, in comparison to EEG, fNIRS, or diffuse optical tomography (DOT), when used for source reconstruction, can achieve relatively high spatial resolution (millimeter-scale), but its temporal resolution is poor because the hemodynamics that it measures evolve on the order of several seconds. This has important neuroscientific implications: e.g., if two spatially close neuronal sources are activated sequentially with only a small temporal separation, single-modal measurements using either EEG or DOT alone would fail to resolve them correctly. Aim: We attempt to address this issue by performing joint EEG and DOT neuronal source reconstruction. Approach: We propose an algorithm that utilizes DOT reconstruction as the spatial prior of EEG reconstruction, and demonstrate the improvements using simulations based on the ICBM152 brain atlas. Results: We show that neuronal sources can be reconstructed with higher spatiotemporal resolution using our algorithm than using either modality individually. Further, we study how the performance of the proposed algorithm can be affected by the locations of the neuronal sources, and how the performance can be enhanced by improving the placement of EEG electrodes and DOT optodes. Conclusions: We demonstrate using simulations that two sources separated by 2.3-3.3 cm and 50 ms can be recovered accurately using the proposed algorithm by suitably combining EEG and DOT, but not by either in isolation. We also show that the performance can be enhanced by optimizing the electrode and optode placement according to the locations of the neuronal sources.
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Affiliation(s)
- Jiaming Cao
- Carnegie Mellon University, Department of Biomedical Engineering, Pittsburgh, Pennsylvania, United States
| | - Theodore J. Huppert
- University of Pittsburgh, Department of Electrical and Computer Engineering Pittsburgh, Pennsylvania, United States
- University of Pittsburgh, Center for Neural Basis of Cognition, Pittsburgh, Pennsylvania, United States
| | - Pulkit Grover
- Carnegie Mellon University, Department of Biomedical Engineering, Pittsburgh, Pennsylvania, United States
- Carnegie Mellon University, Department of Electrical and Computer Engineering, Pittsburgh, Pennsylvania, United States
- Carnegie Mellon University, Neuroscience Institute, Pittsburgh, Pennsylvania, United States
| | - Jana M. Kainerstorfer
- Carnegie Mellon University, Department of Biomedical Engineering, Pittsburgh, Pennsylvania, United States
- Carnegie Mellon University, Department of Electrical and Computer Engineering, Pittsburgh, Pennsylvania, United States
- Carnegie Mellon University, Neuroscience Institute, Pittsburgh, Pennsylvania, United States
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12
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Blaney G, Sassaroli A, Fantini S. Design of a source-detector array for dual-slope diffuse optical imaging. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2020; 91:093702. [PMID: 33003793 PMCID: PMC7519873 DOI: 10.1063/5.0015512] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Accepted: 08/23/2020] [Indexed: 05/27/2023]
Abstract
We recently proposed a dual-slope technique for diffuse optical spectroscopy and imaging of scattering media. This technique requires a special configuration of light sources and optical detectors to create dual-slope sets. Here, we present methods for designing, optimizing, and building an optical imaging array that features m dual-slope sets to image n voxels. After defining the m × n matrix (S) that describes the sensitivity of the m dual-slope measurements to absorption perturbations in each of the n voxels, we formulate the inverse imaging problem in terms of the Moore-Penrose pseudoinverse matrix of S (S+). This approach allows us to introduce several measures of imaging performance: reconstruction accuracy (correct spatial mapping), crosstalk (incorrect spatial mapping), resolution (point spread function), and localization (offset between actual and reconstructed point perturbations). Furthermore, by considering the singular value decomposition formulation, we show the significance of visualizing the first m right singular vectors of S, whose linear combination generates the reconstructed map. We also describe methods to build a physical array using a three-layer mesh structure (two polyethylene films and polypropylene hook-and-loop fabric) embedded in silicone (PDMS). Finally, we apply these methods to design two arrays and choose one to construct. The chosen array consists of 16 illumination fibers, 10 detection fibers, and 27 dual-slope sets for dual-slope imaging optimized for the size of field of view and localization of absorption perturbations. This particular array is aimed at functional near-infrared spectroscopy of the human brain, but the methods presented here are of general applicability to a variety of devices and imaging scenarios.
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Affiliation(s)
- Giles Blaney
- Department of Biomedical Engineering, Tufts University,
Medford, Massachusetts 02155, USA
| | - Angelo Sassaroli
- Department of Biomedical Engineering, Tufts University,
Medford, Massachusetts 02155, USA
| | - Sergio Fantini
- Department of Biomedical Engineering, Tufts University,
Medford, Massachusetts 02155, USA
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13
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Rosas-Romero R, Guevara E, Peng K, Nguyen DK, Lesage F, Pouliot P, Lima-Saad WE. Prediction of epileptic seizures with convolutional neural networks and functional near-infrared spectroscopy signals. Comput Biol Med 2019; 111:103355. [PMID: 31323603 DOI: 10.1016/j.compbiomed.2019.103355] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2019] [Revised: 07/08/2019] [Accepted: 07/08/2019] [Indexed: 11/28/2022]
Abstract
There have been different efforts to predict epileptic seizures and most of them are based on the analysis of electroencephalography (EEG) signals; however, recent publications have suggested that functional Near-Infrared Spectroscopy (fNIRS), a relatively new technique, could be used to predict seizures. The objectives of this research are to show that the application of fNIRS to epileptic seizure detection yields results that are superior to those based on EEG and to demonstrate that the application of deep learning to this problem is suitable given the nature of fNIRS recordings. A Convolutional Neural Network (CNN) is applied to the prediction of epileptic seizures from fNIRS signals, an optical modality for recording brain waves. The implementation of the proposed method is presented in this work. Application of CNN to fNIRS recordings showed an accuracy ranging between 96.9% and 100%, sensitivity between 95.24% and 100%, specificity between 98.57% and 100%, a positive predictive value between 98.52% and 100%, and a negative predictive value between 95.39% and 100%. The most important aspect of this research is the combination of fNIRS signals with the particular CNN algorithm. The fNIRS modality has not been used in epileptic seizure prediction. A CNN is suitable for this application because fNIRS recordings are high dimensional data and they can be modeled as three-dimensional tensors for classification.
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Affiliation(s)
| | - Edgar Guevara
- CONACYT - Universidad Autónoma de San Luis Potosí, Mexico
| | - Ke Peng
- École Polytechnique de Montréal, Canada
| | | | - Frédéric Lesage
- École Polytechnique de Montréal, Canada; Montreal Heart Institute, Canada
| | - Philippe Pouliot
- École Polytechnique de Montréal, Canada; Montreal Heart Institute, Canada
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14
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Machado A, Cai Z, Pellegrino G, Marcotte O, Vincent T, Lina JM, Kobayashi E, Grova C. Optimal positioning of optodes on the scalp for personalized functional near-infrared spectroscopy investigations. J Neurosci Methods 2018; 309:91-108. [PMID: 30107210 DOI: 10.1016/j.jneumeth.2018.08.006] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2017] [Revised: 08/07/2018] [Accepted: 08/08/2018] [Indexed: 12/21/2022]
Abstract
BACKGROUND Application of functional Near InfraRed Spectroscopy (fNIRS) in neurology is still limited as a good optical coupling and optimized optode coverage of specific brain regions remains challenging, notably for prolonged monitoring. METHODS We propose to evaluate a new procedure allowing accurate investigation of specific brain regions. The procedure consists in: (i) A priori maximization of spatial sensitivity of fNIRS measurements targeting specific brain regions, while reducing the number of applied optodes in order to decrease installation time and improve subject comfort. (ii) Utilization of a 3D neuronavigation device and usage of collodion to glue optodes on the scalp, ensuring good optical contact for prolonged investigations. (iii) Local reconstruction of the hemodynamic activity along the cortical surface using inverse modelling. RESULTS Using realistic simulations, we demonstrated that maps derived from optimal montage acquisitions showed, after reconstruction, spatial resolution only slightly lower to that of ultra high density montages while significantly reducing the number of optodes. The optimal montages provided overall good quantitative accuracy especially at the peak of the spatially reconstructed map. We also evaluated real motor responses in two healthy subjects and obtained reproducible motor responses over different sessions. COMPARISON WITH EXISTING METHODS We are among the first to propose a mathematical optimization strategy, allowing high sensitivity measurements. CONCLUSIONS Our results support that using personalized optimal montages should allow to conduct accurate fNIRS studies in clinical settings and realistic lifestyle conditions.
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Affiliation(s)
- A Machado
- Multimodal Functional Imaging Laboratory, Biomedical Engineering Department, McGill University, Canada.
| | - Z Cai
- Physics Department and PERFORM center, Concordia University, Montreal, Canada
| | - G Pellegrino
- Multimodal Functional Imaging Laboratory, Biomedical Engineering Department, McGill University, Canada; IRCCS Fondazione Ospedale San Camillo Via Alberoni, Venice, Italy
| | - O Marcotte
- GERAD, École des HEC, Montréal, Canada; Département d'informatique, Université du Québec à Montréal, Canada; Centre de Recherches Mathématiques, Université de Montréal, Québec, Canada
| | - T Vincent
- Physics Department and PERFORM center, Concordia University, Montreal, Canada
| | - J-M Lina
- École de technologie supérieure de l'Université du Québec, Canada; Centre de Recherches Mathématiques, Université de Montréal, Québec, Canada
| | - E Kobayashi
- Montreal Neurological Institute, Department of Neurology and Neurosurgery, McGill University, Canada
| | - C Grova
- Multimodal Functional Imaging Laboratory, Biomedical Engineering Department, McGill University, Canada; Physics Department and PERFORM center, Concordia University, Montreal, Canada; Montreal Neurological Institute, Department of Neurology and Neurosurgery, McGill University, Canada; Centre de Recherches Mathématiques, Université de Montréal, Québec, Canada
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15
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Brigadoi S, Salvagnin D, Fischetti M, Cooper RJ. Array Designer: automated optimized array design for functional near-infrared spectroscopy. NEUROPHOTONICS 2018; 5:035010. [PMID: 30238021 PMCID: PMC6135986 DOI: 10.1117/1.nph.5.3.035010] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2018] [Accepted: 08/06/2018] [Indexed: 05/08/2023]
Abstract
The position of each source and detector "optode" on the scalp, and their relative separations, determines the sensitivity of each functional near-infrared spectroscopy (fNIRS) channel to the underlying cortex. As a result, selecting appropriate scalp locations for the available sources and detectors is critical to every fNIRS experiment. At present, it is standard practice for the user to undertake this task manually; to select what they believe are the best locations on the scalp to place their optodes so as to sample a given cortical region-of-interest (ROI). This process is difficult, time-consuming, and highly subjective. Here, we propose a tool, Array Designer, that is able to automatically design optimized fNIRS arrays given a user-defined ROI and certain features of the available fNIRS device. Critically, the Array Designer methodology is generalizable and will be applicable to almost any subject population or fNIRS device. We describe and validate the algorithmic methodology that underpins Array Designer by running multiple simulations of array design problems in a realistic anatomical model. We believe that Array Designer has the potential to end the need for manual array design, and in doing so save researchers time, improve fNIRS data quality, and promote standardization across the field.
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Affiliation(s)
- Sabrina Brigadoi
- University College London, Biomedical Optics Research Laboratory, Department of Medical Physics and Biomedical Engineering, London, United Kingdom
- University of Padova, Department of Developmental Psychology, Padova, Italy
| | - Domenico Salvagnin
- University of Padova, Department of Information Engineering, Padova, Italy
| | - Matteo Fischetti
- University of Padova, Department of Information Engineering, Padova, Italy
| | - Robert J. Cooper
- University College London, Biomedical Optics Research Laboratory, Department of Medical Physics and Biomedical Engineering, London, United Kingdom
- NeoLAB, Rosie Hospital, The Evelyn Perinatal Imaging Centre, Cambridge, United Kingdom
- Address all correspondence to: Robert J. Cooper, E-mail:
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16
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Tremblay J, Martínez-Montes E, Vannasing P, Nguyen DK, Sawan M, Lepore F, Gallagher A. Comparison of source localization techniques in diffuse optical tomography for fNIRS application using a realistic head model. BIOMEDICAL OPTICS EXPRESS 2018; 9:2994-3016. [PMID: 30619642 PMCID: PMC6033567 DOI: 10.1364/boe.9.002994] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2018] [Revised: 05/18/2018] [Accepted: 05/26/2018] [Indexed: 05/24/2023]
Abstract
Functional near-infrared spectroscopy (fNIRS) is a non-invasive imaging technique that elicits growing interest for research and clinical applications. In the last decade, efforts have been made to develop a mathematical framework in order to image the effective sources of hemoglobin variations in brain tissues. Different approaches can be used to impose additional information or constraints when reconstructing the cerebral images of an ill-posed problem. The goal of this study is to compare the performance and limitations of several source localization techniques in the context of fNIRS tomography using individual anatomical magnetic resonance imaging (MRI) to model light propagation. The forward problem is solved using a Monte Carlo simulation of light propagation in the tissues. The inverse problem has been linearized using the Rytov approximation. Then, Tikhonov regularization applied to least squares, truncated singular value decomposition, back-projection, L1-norm regularization, minimum norm estimates, low resolution electromagnetic tomography and Bayesian model averaging techniques are compared using a receiver operating characteristic analysis, blurring and localization error measures. Using realistic simulations (n = 450) and data acquired from a human participant, this study depicts how these source localization techniques behave in a human head fNIRS tomography. When compared to other methods, Bayesian model averaging is proposed as a promising method in DOT and shows great potential to improve specificity, accuracy, as well as to reduce blurring and localization error even in presence of noise and deep sources. Classical reconstruction methods, such as regularized least squares, offer better sensitivity but higher blurring; while more novel L1-based method provides sparse solutions with small blurring and high specificity but lower sensitivity. The application of these methods is also demonstrated experimentally using visual fNIRS experiment with adult participant.
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Affiliation(s)
- Julie Tremblay
- LIONLAB, Centre de recherche du CHU Sainte-Justine, Université de Montréal, Montréal, Canada
| | | | - Phetsamone Vannasing
- LIONLAB, Centre de recherche du CHU Sainte-Justine, Université de Montréal, Montréal, Canada
| | - Dang K Nguyen
- Neurology Division, Centre hospitalier de l'Université de Montréal (CHUM), Hôpital Notre-Dame, Montréal, Canada
| | - Mohamad Sawan
- Polystim Neurotech Lab, Polytechnique Montréal, Montréal, Canada
| | - Franco Lepore
- Centre de recherche en neuropsychologie et cognition (CERNEC), Département de psychologie, Université de Montréal, Montréal, Canada
| | - Anne Gallagher
- LIONLAB, Centre de recherche du CHU Sainte-Justine, Université de Montréal, Montréal, Canada
- Centre de recherche en neuropsychologie et cognition (CERNEC), Département de psychologie, Université de Montréal, Montréal, Canada
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17
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Zimeo Morais GA, Balardin JB, Sato JR. fNIRS Optodes' Location Decider (fOLD): a toolbox for probe arrangement guided by brain regions-of-interest. Sci Rep 2018; 8:3341. [PMID: 29463928 PMCID: PMC5820343 DOI: 10.1038/s41598-018-21716-z] [Citation(s) in RCA: 150] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2017] [Accepted: 01/08/2018] [Indexed: 12/13/2022] Open
Abstract
The employment of functional near-infrared spectroscopy (fNIRS) as a method of brain imaging has increased over the last few years due to its portability, low-cost and robustness to subject movement. Experiments with fNIRS are designed in the face of a limited number of sources and detectors (optodes) to be positioned on selected portion(s) of the scalp. The optodes locations represent an expectation of assessing cortical regions relevant to the experiment’s hypothesis. However, this translation process remains a challenge for fNIRS experimental design. In the present study, we propose an approach that automatically decides the location of fNIRS optodes from a set of predefined positions with the aim of maximizing the anatomical specificity to brain regions-of-interest. The implemented method is based on photon transport simulations on two head atlases. The results are compiled into the publicly available “fNIRS Optodes’ Location Decider” (fOLD). This toolbox is a first-order approach to bring the achieved advancements of parcellation methods and meta-analyses from functional magnetic resonance imaging to more precisely guide the selection of optode positions for fNIRS experiments.
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Affiliation(s)
| | - Joana Bisol Balardin
- Instituto do Cérebro, Hospital Israelita Albert Einstein, 05652-900, São Paulo, Brazil
| | - João Ricardo Sato
- Center for Mathematics Computing and Cognition, Universidade Federal do ABC, 09210-180, São Bernardo do Campo, Brazil
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18
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Zhao H, Cooper RJ. Review of recent progress toward a fiberless, whole-scalp diffuse optical tomography system. NEUROPHOTONICS 2018; 5:011012. [PMID: 28983490 PMCID: PMC5613216 DOI: 10.1117/1.nph.5.1.011012] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2017] [Accepted: 08/28/2017] [Indexed: 05/23/2023]
Abstract
The development of a whole-scalp, high sampling-density diffuse optical tomography (DOT) system is a critical next step in the evolution of the field of diffuse optics. To achieve this with optical fiber bundles is extremely challenging, simply because of the sheer number of bundles required, and the associated challenges of weight and ergonomics. Dispensing with optical fiber bundles and moving to head-mounted optoelectronics can potentially facilitate the advent of a new generation of wearable, whole-scalp technologies that will open up a range of new experimental and clinical applications for diffuse optical measurements. Here, we present a concise review of the significant progress that has been made toward achieving a wearable, fiberless, high-density, whole-scalp DOT system. We identify the key limitations of current technologies and discuss the possible opportunities for future development.
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Affiliation(s)
- Hubin Zhao
- University College London, Biomedical Optics Research Laboratory, Department of Medical Physics and Biomedical Engineering, London, United Kingdom
| | - Robert J. Cooper
- University College London, Biomedical Optics Research Laboratory, Department of Medical Physics and Biomedical Engineering, London, United Kingdom
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19
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Chowdhury RA, Pellegrino G, Aydin Ü, Lina JM, Dubeau F, Kobayashi E, Grova C. Reproducibility of EEG-MEG fusion source analysis of interictal spikes: Relevance in presurgical evaluation of epilepsy. Hum Brain Mapp 2017; 39:880-901. [PMID: 29164737 DOI: 10.1002/hbm.23889] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2017] [Revised: 11/03/2017] [Accepted: 11/07/2017] [Indexed: 11/06/2022] Open
Abstract
Fusion of electroencephalography (EEG) and magnetoencephalography (MEG) data using maximum entropy on the mean method (MEM-fusion) takes advantage of the complementarities between EEG and MEG to improve localization accuracy. Simulation studies demonstrated MEM-fusion to be robust especially in noisy conditions such as single spike source localizations (SSSL). Our objective was to assess the reliability of SSSL using MEM-fusion on clinical data. We proposed to cluster SSSL results to find the most reliable and consistent source map from the reconstructed sources, the so-called consensus map. Thirty-four types of interictal epileptic discharges (IEDs) were analyzed from 26 patients with well-defined epileptogenic focus. SSSLs were performed on EEG, MEG, and fusion data and consensus maps were estimated using hierarchical clustering. Qualitative (spike-to-spike reproducibility rate, SSR) and quantitative (localization error and spatial dispersion) assessments were performed using the epileptogenic focus as clinical reference. Fusion SSSL provided significantly better results than EEG or MEG alone. Fusion found at least one cluster concordant with the clinical reference in all cases. This concordant cluster was always the one involving the highest number of spikes. Fusion yielded highest reproducibility (SSR EEG = 55%, MEG = 71%, fusion = 90%) and lowest localization error. Also, using only few channels from either modality (21EEG + 272MEG or 54EEG + 25MEG) was sufficient to reach accurate fusion. MEM-fusion with consensus map approach provides an objective way of finding the most reliable and concordant generators of IEDs. We, therefore, suggest the pertinence of SSSL using MEM-fusion as a valuable clinical tool for presurgical evaluation of epilepsy.
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Affiliation(s)
- Rasheda Arman Chowdhury
- Multimodal Functional Imaging Lab, Biomedical Engineering Department, McGill University, Montreal, Québec, Canada
| | | | - Ümit Aydin
- Multimodal Functional Imaging Lab, Department of Physics and PERFORM Centre, Concordia University, Montreal, Québec, Canada
| | - Jean-Marc Lina
- Ecole de Technologie Supérieure, Montréal, Québec, Canada.,Centre de Recherches Mathématiques, Université de Montréal, Montréal, Québec, Canada
| | - François Dubeau
- Neurology and Neurosurgery Department, Montreal Neurological Institute, McGill University, Montreal, Québec, Canada
| | - Eliane Kobayashi
- Neurology and Neurosurgery Department, Montreal Neurological Institute, McGill University, Montreal, Québec, Canada
| | - Christophe Grova
- Multimodal Functional Imaging Lab, Biomedical Engineering Department, McGill University, Montreal, Québec, Canada.,Centre de Recherches Mathématiques, Université de Montréal, Montréal, Québec, Canada.,Neurology and Neurosurgery Department, Montreal Neurological Institute, McGill University, Montreal, Québec, Canada.,Multimodal Functional Imaging Lab, Department of Physics and PERFORM Centre, Concordia University, Montreal, Québec, Canada
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20
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Vasta R, Cerasa A, Gramigna V, Augimeri A, Olivadese G, Pellegrino G, Martino I, Machado A, Cai Z, Caracciolo M, Grova C, Quattrone A. The movement time analyser task investigated with functional near infrared spectroscopy: an ecologic approach for measuring hemodynamic response in the motor system. Aging Clin Exp Res 2017; 29:311-318. [PMID: 27055849 DOI: 10.1007/s40520-016-0566-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2015] [Accepted: 03/21/2016] [Indexed: 11/26/2022]
Abstract
AIMS Movement time analyzer (MTA) is an objective instrument to evaluate the degree of motor impairment as well as to investigate the dopaminergic drug effect in Parkinson's disease patients. The aim of this study is to validate a new ecologic neuroimaging tool for quantifying MTA-related hemodynamic response of the cortical motor system by means of functional near-infrared spectroscopy (fNIRS). MATERIALS 11 right-handed healthy volunteers (six male and five female, age range 27-64 years) were studied with fNIRS and functional magnetic resonance imaging (fMRI) while performing MTA task for each hand. RESULTS MTA performance was better for the dominant hand and younger participants. Both fNIRS and fMRI analyses revealed MTA-related increase of haemoglobin levels in the primary motor and premotor cortices contralateral to the moving hand. This response progressively increased with aging. CONCLUSION These findings supported the translation of fNIRS-based MTA behavioural tool in clinical practice.
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Affiliation(s)
- Roberta Vasta
- Institute of Bioimaging and Molecular Physiology-CNR, 88100, Catanzaro, Italy
| | - Antonio Cerasa
- Institute of Bioimaging and Molecular Physiology-CNR, 88100, Catanzaro, Italy.
| | - Vera Gramigna
- Institute of Bioimaging and Molecular Physiology-CNR, 88100, Catanzaro, Italy
| | - Antonio Augimeri
- Institute of Bioimaging and Molecular Physiology-CNR, 88100, Catanzaro, Italy
| | - Giuseppe Olivadese
- Institute of Bioimaging and Molecular Physiology-CNR, 88100, Catanzaro, Italy
| | - Giovanni Pellegrino
- Multimodal Functional Imaging Laboratory, Biomedical Engineering Department, Montreal Neurological Institute, McGill University, Quebec, H3A 2B4, Canada
| | - Iolanda Martino
- Institute of Bioimaging and Molecular Physiology-CNR, 88100, Catanzaro, Italy
| | - Alexis Machado
- Multimodal Functional Imaging Laboratory, Biomedical Engineering Department, Montreal Neurological Institute, McGill University, Quebec, H3A 2B4, Canada
| | - Zhengchen Cai
- Multimodal Functional Imaging Laboratory, Biomedical Engineering Department, Montreal Neurological Institute, McGill University, Quebec, H3A 2B4, Canada
- Physics Department and PERFORM Centre, Concordia University, Montreal, Canada
| | - Manuela Caracciolo
- Institute of Bioimaging and Molecular Physiology-CNR, 88100, Catanzaro, Italy
| | - Christophe Grova
- Multimodal Functional Imaging Laboratory, Biomedical Engineering Department, Montreal Neurological Institute, McGill University, Quebec, H3A 2B4, Canada
- Neurology and Neurosurgery Department, Neurological Institute, McGill University, Montreal, Canada
- Physics Department and PERFORM Centre, Concordia University, Montreal, Canada
| | - Aldo Quattrone
- Institute of Bioimaging and Molecular Physiology-CNR, 88100, Catanzaro, Italy
- Institute of Neurology, University Magna Graecia, Germaneto, CZ, Italy
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21
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Peng K, Pouliot P, Lesage F, Nguyen DK. Multichannel continuous electroencephalography-functional near-infrared spectroscopy recording of focal seizures and interictal epileptiform discharges in human epilepsy: a review. NEUROPHOTONICS 2016; 3:031402. [PMID: 26958576 PMCID: PMC4750425 DOI: 10.1117/1.nph.3.3.031402] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2015] [Accepted: 12/08/2015] [Indexed: 05/11/2023]
Abstract
Functional near-infrared spectroscopy (fNIRS) has emerged as a promising neuroimaging technique as it allows noninvasive and long-term monitoring of cortical hemodynamics. Recent work by our group and others has revealed the potential of fNIRS, combined with electroencephalography (EEG), in the context of human epilepsy. Hemodynamic brain responses attributed to epileptic events, such as seizures and interictal epileptiform discharges (IEDs), are routinely observed with a good degree of statistical significance and in concordance with clinical presentation. Recording done with over 100 channels allows sufficiently large coverage of the epileptic focus and other areas. Three types of seizures have been documented: frontal lobe seizures, temporal lobe seizures, and posterior seizures. Increased oxygenation was observed in the epileptic focus in most cases, while rapid but similar hemodynamic variations were identified in the contralateral homologous region. While investigating IEDs, it was shown that their hemodynamic effect is observable with fNIRS, that their response is associated with significant (inhibitive) nonlinearities, and that the sensitivity and specificity of fNIRS to localize the epileptic focus can be estimated in a sample of 40 patients. This paper first reviews recent EEG-fNIRS developments in epilepsy research and then describes applications to the study of focal seizures and IEDs.
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Affiliation(s)
- Ke Peng
- École Polytechnique de Montréal, Département de génie électrique and Institut de génie biomédical, C.P. 6079, Succursale Centre-ville, Montréal, Quebec H3C3A7, Canada
| | - Philippe Pouliot
- École Polytechnique de Montréal, Département de génie électrique and Institut de génie biomédical, C.P. 6079, Succursale Centre-ville, Montréal, Quebec H3C3A7, Canada
- Institut de Cardiologie de Montréal, Centre de recherche, 5000 rue Bélanger est, Montréal, Quebec H1T1C8, Canada
| | - Frédéric Lesage
- École Polytechnique de Montréal, Département de génie électrique and Institut de génie biomédical, C.P. 6079, Succursale Centre-ville, Montréal, Quebec H3C3A7, Canada
- Institut de Cardiologie de Montréal, Centre de recherche, 5000 rue Bélanger est, Montréal, Quebec H1T1C8, Canada
| | - Dang Khoa Nguyen
- Centre Hospitalier de l’Université de Montréal, Hôpital Notre-Dame, Service de neurologie, 1560 rue Sherbrooke est, Montréal, Quebec H2L4M1, Canada
- Address all correspondence to: Dang Khoa Nguyen, E-mail:
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Pellegrino G, Machado A, von Ellenrieder N, Watanabe S, Hall JA, Lina JM, Kobayashi E, Grova C. Hemodynamic Response to Interictal Epileptiform Discharges Addressed by Personalized EEG-fNIRS Recordings. Front Neurosci 2016; 10:102. [PMID: 27047325 PMCID: PMC4801878 DOI: 10.3389/fnins.2016.00102] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2015] [Accepted: 02/29/2016] [Indexed: 11/13/2022] Open
Abstract
Objective: We aimed at studying the hemodynamic response (HR) to Interictal Epileptic Discharges (IEDs) using patient-specific and prolonged simultaneous ElectroEncephaloGraphy (EEG) and functional Near InfraRed Spectroscopy (fNIRS) recordings. Methods: The epileptic generator was localized using Magnetoencephalography source imaging. fNIRS montage was tailored for each patient, using an algorithm to optimize the sensitivity to the epileptic generator. Optodes were glued using collodion to achieve prolonged acquisition with high quality signal. fNIRS data analysis was handled with no a priori constraint on HR time course, averaging fNIRS signals to similar IEDs. Cluster-permutation analysis was performed on 3D reconstructed fNIRS data to identify significant spatio-temporal HR clusters. Standard (GLM with fixed HRF) and cluster-permutation EEG-fMRI analyses were performed for comparison purposes. Results: fNIRS detected HR to IEDs for 8/9 patients. It mainly consisted oxy-hemoglobin increases (seven patients), followed by oxy-hemoglobin decreases (six patients). HR was lateralized in six patients and lasted from 8.5 to 30 s. Standard EEG-fMRI analysis detected an HR in 4/9 patients (4/9 without enough IEDs, 1/9 unreliable result). The cluster-permutation EEG-fMRI analysis restricted to the region investigated by fNIRS showed additional strong and non-canonical BOLD responses starting earlier than the IEDs and lasting up to 30 s. Conclusions: (i) EEG-fNIRS is suitable to detect the HR to IEDs and can outperform EEG-fMRI because of prolonged recordings and greater chance to detect IEDs; (ii) cluster-permutation analysis unveils additional HR features underestimated when imposing a canonical HR function (iii) the HR is often bilateral and lasts up to 30 s.
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Affiliation(s)
- Giovanni Pellegrino
- Multimodal Functional Imaging Laboratory, Biomedical Engineering Department, Montreal Neurological Institute, McGill University Montreal, QC, Canada
| | - Alexis Machado
- Multimodal Functional Imaging Laboratory, Biomedical Engineering Department, Montreal Neurological Institute, McGill University Montreal, QC, Canada
| | - Nicolas von Ellenrieder
- Multimodal Functional Imaging Laboratory, Biomedical Engineering Department, Montreal Neurological Institute, McGill University Montreal, QC, Canada
| | - Satsuki Watanabe
- Department of Neurology and Neurosurgery, Montreal Neurological Institute and Hospital Montreal, QC, Canada
| | - Jeffery A Hall
- Department of Neurology and Neurosurgery, Montreal Neurological Institute and Hospital Montreal, QC, Canada
| | - Jean-Marc Lina
- Departement de Génie Electrique, Ecole de Technologie SupérieureMontreal, QC, Canada; Center of Advanced Research in Sleep Medicine, Hospital Du Sacre-CœurMontreal, QC, Canada; Centre de Recherches Mathematiques, University of MontréalMontreal, QC, Canada
| | - Eliane Kobayashi
- Department of Neurology and Neurosurgery, Montreal Neurological Institute and Hospital Montreal, QC, Canada
| | - Christophe Grova
- Multimodal Functional Imaging Laboratory, Biomedical Engineering Department, Montreal Neurological Institute, McGill UniversityMontreal, QC, Canada; Department of Neurology and Neurosurgery, Montreal Neurological Institute and HospitalMontreal, QC, Canada; Centre de Recherches Mathematiques, University of MontréalMontreal, QC, Canada; Physics Department and Perform Center, Concordia UniversityMontreal, QC, Canada
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