1
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Holbourn A, Kuhnt W, Kulhanek DK, Mountain G, Rosenthal Y, Sagawa T, Lübbers J, Andersen N. Re-organization of Pacific overturning circulation across the Miocene Climate Optimum. Nat Commun 2024; 15:8135. [PMID: 39289389 PMCID: PMC11408672 DOI: 10.1038/s41467-024-52516-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Accepted: 09/10/2024] [Indexed: 09/19/2024] Open
Abstract
The response of the ocean overturning circulation to global warming remains controversial. Here, we integrate a multiproxy record from International Ocean Discovery Program Site U1490 in the western equatorial Pacific with published data from the Pacific, Southern and Indian Oceans to investigate the evolution of deep water circulation during the Miocene Climate Optimum (MCO) and Middle Miocene Climate Transition (MMCT). We find that the northward export of southern-sourced deep waters was closely tied to high-latitude climate and Antarctic ice cover variations. Global warming during the MCO drove a progressive decrease in carbonate ion concentration and density stratification, shifting the overturning from intermediate to deeper waters. In the western equatorial Pacific, carbonate dissolution was compensated by increased pelagic productivity, resulting in overall elevated carbonate accumulation rates after ~16 Ma. Stepwise global cooling and Antarctic glacial expansion during the MMCT promoted a gradual improvement in carbonate preservation and the initiation of a near-modern Pacific overturning circulation. We infer that changes in the latitudinal thermal gradient and in Southern Ocean zonal wind stress and upper ocean stratification drove radically different modes of deep water formation and overturning across the MCO and MMCT.
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Affiliation(s)
- Ann Holbourn
- Institute of Geosciences, Christian-Albrechts-University, D-24118, Kiel, Germany.
| | - Wolfgang Kuhnt
- Institute of Geosciences, Christian-Albrechts-University, D-24118, Kiel, Germany
| | - Denise K Kulhanek
- Institute of Geosciences, Christian-Albrechts-University, D-24118, Kiel, Germany
| | - Gregory Mountain
- Department of Earth and Planetary Sciences, Rutgers, The State University of New Jersey, Piscataway, NJ, USA
| | - Yair Rosenthal
- Department of Earth and Planetary Sciences, Rutgers, The State University of New Jersey, Piscataway, NJ, USA
- Department of Marine and Coastal Sciences, Rutgers, The State University of New Jersey, New Brunswick, NJ, USA
| | - Takuya Sagawa
- Faculty of Geosciences and Civil Engineering, Institute of Science and Engineering, Kanazawa University, Kanazawa, Japan
| | - Julia Lübbers
- Institute of Geosciences, Christian-Albrechts-University, D-24118, Kiel, Germany
- Center for Marine and Environmental Research (CIMA), University of Algarve, Faro, Portugal
| | - Nils Andersen
- Leibniz Laboratory for Radiometric Dating and Stable Isotope Research, Christian-Albrechts-University Kiel, D-24118, Kiel, Germany
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2
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Peng M, Cardoso JCR, Power DM. Evolution of chitin-synthase in molluscs and their response to ocean acidification. Mol Phylogenet Evol 2024; 201:108192. [PMID: 39255869 DOI: 10.1016/j.ympev.2024.108192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2024] [Revised: 08/28/2024] [Accepted: 09/05/2024] [Indexed: 09/12/2024]
Abstract
Chitin-synthase (CHS) is found in most eukaryotes and has a complex evolutionary history. Research into CHS has mainly been in the context of biomineralization of mollusc shells an area of high interest due to the consequences of ocean acidification. Exploration of CHS at the genomic level in molluscs, the evolution of isoforms, their tissue distribution, and response to environmental challenges are largely unknown. Exploiting the extensive molecular resources for mollusc species it is revealed that bivalves possess the largest number of CHS genes (12-22) reported to date in eukaryotes. The evolutionary tree constructed at the class level of molluscs indicates four CHS Type II isoforms (A-D) probably existed in the most recent common ancestor, and Type II-A (Type II-A-1/Type II-A-2) and Type II-C (Type II-C-1/Type II-C-2) underwent further differentiation. Non-specific loss of CHS isoforms occurred at the class level, and in some Type II (B-D groups) isoforms the myosin head domain, which is associated with shell formation, was not preserved and highly species-specific tissue expression of CHS isoforms occurred. These observations strongly support the idea of CHS functional diversification with shell biomineralization being one of several important functions. Analysis of transcriptome data uncovered the species-specific potential of CHS isoforms in shell formation and a species-specific response to ocean acidification (OA). The impact of OA was not CHS isoform-dependent although in Mytilus, Type I-B and Type II-D gene expression was down-regulated in both M. galloprovincialis and M. coruscus. In summary, during CHS evolution the gene family expanded in bivalves generating a large diversity of isoforms with different structures and with a ubiquitous tissue distribution suggesting that chitin is involved in many biological functions. These findings provide insight into CHS evolution in molluscs and lay the foundation for research into their function and response to environmental changes.
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Affiliation(s)
- Maoxiao Peng
- Comparative Endocrinology and Integrative Biology, Centre of Marine Sciences, Universidade do Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
| | - João C R Cardoso
- Comparative Endocrinology and Integrative Biology, Centre of Marine Sciences, Universidade do Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
| | - Deborah M Power
- Comparative Endocrinology and Integrative Biology, Centre of Marine Sciences, Universidade do Algarve, Campus de Gambelas, 8005-139 Faro, Portugal; International Research Center for Marine Biosciences, Ministry of Science and Technology, Shanghai Ocean University, Shanghai, China; Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Ministry of Education, Shanghai Ocean University, Shanghai, China.
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3
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Zander RH. Lineages of Fractal Genera Comprise the 88-Million-Year Steel Evolutionary Spine of the Ecosphere. PLANTS (BASEL, SWITZERLAND) 2024; 13:1559. [PMID: 38891367 PMCID: PMC11174399 DOI: 10.3390/plants13111559] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Revised: 05/29/2024] [Accepted: 06/03/2024] [Indexed: 06/21/2024]
Abstract
Fractal evolution is apparently effective in selectively preserving environmentally resilient traits for more than 80 million years in Streptotrichaceae (Bryophyta). An analysis simulated maximum destruction of ancestral traits in that large lineage. The constraints enforced were the preservation of newest ancestral traits, and all immediate descendant species obtained different new traits. Maximum character state changes in ancestral traits were 16 percent of all possible traits in any one sub-lineage, or 73 percent total of the entire lineage. Results showed, however, that only four ancestral traits were permanently eliminated in any one lineage or sub-lineage. A lineage maintains maximum biodiversity of temporally and regionally survival-effective traits at minimum expense to resilience across a geologic time of 88 million years for the group studied. Similar processes generating an extant punctuated equilibrium as bursts of about four descendants per genus and one genus per 1-2 epochs are possible in other living groups given similar emergent processes. The mechanism is considered complexity-related, the lineage being a self-organized emergent phenomenon strongly maintained in the ecosphere by natural selection on fractal genera.
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Affiliation(s)
- Richard H Zander
- Missouri Botanical Garden, 4344 Shaw Blvd., St. Louis, MI 63110, USA
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4
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Coulon N, Pilet S, Lizé A, Lacoue-Labarthe T, Sturbois A, Toussaint A, Feunteun E, Carpentier A. Shark critical life stage vulnerability to monthly temperature variations under climate change. MARINE ENVIRONMENTAL RESEARCH 2024; 198:106531. [PMID: 38696933 DOI: 10.1016/j.marenvres.2024.106531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Revised: 04/22/2024] [Accepted: 04/28/2024] [Indexed: 05/04/2024]
Abstract
In a 10-month experimental study, we assessed the combined impact of warming and acidification on critical life stages of small-spotted catshark (Scyliorhinus canicula). Using recently developed frameworks, we disentangled individual and group responses to two climate scenarios projected for 2100 (SSP2-4.5: Middle of the road and SSP5-8.5: Fossil-fueled Development). Seasonal temperature fluctuations revealed the acute vulnerability of embryos to summer temperatures, with hatching success ranging from 82% for the control and SSP2-4.5 treatments to only 11% for the SSP5-8.5 treatment. The death of embryos was preceded by distinct individual growth trajectories between the treatments, and also revealed inter-individual variations within treatments. Embryos with the lowest hatching success had lower yolk consumption rates, and growth rates associated with a lower energy assimilation, and almost all of them failed to transition to internal gills. Within 6 months after hatching, no additional mortality was observed due to cooler temperatures.
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Affiliation(s)
- Noémie Coulon
- Laboratoire de Biologie des Organismes et Ecosystèmes Aquatiques (BOREA) MNHN, CNRS, IRD, SU, UCN, UA, Station Marine de Dinard, Dinard, France.
| | - Stanislas Pilet
- Laboratoire de Biologie des Organismes et Ecosystèmes Aquatiques (BOREA) MNHN, CNRS, IRD, SU, UCN, UA, Station Marine de Dinard, Dinard, France
| | - Anne Lizé
- Laboratoire de Biologie des Organismes et Ecosystèmes Aquatiques (BOREA) MNHN, CNRS, IRD, SU, UCN, UA, Station Marine de Dinard, Dinard, France; School of Life Sciences, University of Liverpool, Liverpool, UK
| | - Thomas Lacoue-Labarthe
- Littoral, Environnement et Sociétés (LIENSs), UMR 7266, CNRS-Université de La Rochelle, La Rochelle, France
| | - Anthony Sturbois
- VivArmor Nature, Réserve Naturelle Nationale de la Baie de Saint-Brieuc, Laboratoire des Sciences de l'environnement Marin (LEMAR), UMR 6539, France
| | - Aurèle Toussaint
- Centre de Recherche sur la Biodiversité et l'Environnement (CRBE), UMR5300 - UPS-CNRS-IRD-INP, Université Paul-Sabatier - Toulouse 3, Toulouse, France
| | - Eric Feunteun
- Laboratoire de Biologie des Organismes et Ecosystèmes Aquatiques (BOREA) MNHN, CNRS, IRD, SU, UCN, UA, Station Marine de Dinard, Dinard, France; Centre de GéoEcologie Littorale (CGEL, EPHE-PSL), Dinard, France
| | - Alexandre Carpentier
- Université de Rennes, Laboratoire de Biologie des Organismes et Ecosystèmes Aquatiques (BOREA) MNHN, CNRS, IRD, SU, UCN, UA, Campus de Beaulieu, Rennes, France
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5
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Song H, Wu Y, Dai X, Dal Corso J, Wang F, Feng Y, Chu D, Tian L, Song H, Foster WJ. Respiratory protein-driven selectivity during the Permian-Triassic mass extinction. Innovation (N Y) 2024; 5:100618. [PMID: 38638583 PMCID: PMC11025005 DOI: 10.1016/j.xinn.2024.100618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Accepted: 03/25/2024] [Indexed: 04/20/2024] Open
Abstract
Extinction selectivity determines the direction of macroevolution, especially during mass extinction; however, its driving mechanisms remain poorly understood. By investigating the physiological selectivity of marine animals during the Permian-Triassic mass extinction, we found that marine clades with lower O2-carrying capacity hemerythrin proteins and those relying on O2 diffusion experienced significantly greater extinction intensity and body-size reduction than those with higher O2-carrying capacity hemoglobin or hemocyanin proteins. Our findings suggest that animals with high O2-carrying capacity obtained the necessary O2 even under hypoxia and compensated for the increased energy requirements caused by ocean acidification, which enabled their survival during the Permian-Triassic mass extinction. Thus, high O2-carrying capacity may have been crucial for the transition from the Paleozoic to the Modern Evolutionary Fauna.
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Affiliation(s)
- Haijun Song
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan 430074, China
| | - Yuyang Wu
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan 430074, China
| | - Xu Dai
- Biogéosciences, UMR 6282, CNRS, Université de Bourgogne, 21000 Dijon, France
| | - Jacopo Dal Corso
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan 430074, China
| | - Fengyu Wang
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan 430074, China
| | - Yan Feng
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan 430074, China
| | - Daoliang Chu
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan 430074, China
| | - Li Tian
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan 430074, China
| | - Huyue Song
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan 430074, China
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6
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Foster B, Hugosson F, Scucchia F, Enjolras C, Babonis LS, Hoaen W, Martindale MQ. A novel in vivo system to study coral biomineralization in the starlet sea anemone, Nematostella vectensis. iScience 2024; 27:109131. [PMID: 38384856 PMCID: PMC10879693 DOI: 10.1016/j.isci.2024.109131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Revised: 12/18/2023] [Accepted: 02/01/2024] [Indexed: 02/23/2024] Open
Abstract
Coral conservation requires a mechanistic understanding of how environmental stresses disrupt biomineralization, but progress has been slow, primarily because corals are not easily amenable to laboratory research. Here, we highlight how the starlet sea anemone, Nematostella vectensis, can serve as a model to interrogate the cellular mechanisms of coral biomineralization. We have developed transgenic constructs using biomineralizing genes that can be injected into Nematostella zygotes and designed such that translated proteins may be purified for physicochemical characterization. Using fluorescent tags, we confirm the ectopic expression of the coral biomineralizing protein, SpCARP1, in Nematostella. We demonstrate via calcein staining that SpCARP1 concentrates calcium ions in Nematostella, likely initiating the formation of mineral precursors, consistent with its suspected role in corals. These results lay a fundamental groundwork for establishing Nematostella as an in vivo system to explore the evolutionary and cellular mechanisms of coral biomineralization, improve coral conservation efforts, and even develop novel biomaterials.
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Affiliation(s)
- Brent Foster
- The Whitney Laboratory for Marine Bioscience, Department of Biology, University of Florida, Gainesville, FL 32080, USA
| | - Fredrik Hugosson
- The Whitney Laboratory for Marine Bioscience, Department of Biology, University of Florida, Gainesville, FL 32080, USA
| | - Federica Scucchia
- The Whitney Laboratory for Marine Bioscience, Department of Biology, University of Florida, Gainesville, FL 32080, USA
| | - Camille Enjolras
- The Whitney Laboratory for Marine Bioscience, Department of Biology, University of Florida, Gainesville, FL 32080, USA
- Institute of Human Genetics, CNRS, Montpellier 34090, France
| | - Leslie S. Babonis
- The Whitney Laboratory for Marine Bioscience, Department of Biology, University of Florida, Gainesville, FL 32080, USA
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY 14853, USA
| | - William Hoaen
- School of Biosciences, Cardiff University, Cardiff CF10 3AT, UK
| | - Mark Q. Martindale
- The Whitney Laboratory for Marine Bioscience, Department of Biology, University of Florida, Gainesville, FL 32080, USA
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7
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Dutkiewicz A, Boulila S, Dietmar Müller R. Deep-sea hiatus record reveals orbital pacing by 2.4 Myr eccentricity grand cycles. Nat Commun 2024; 15:1998. [PMID: 38472187 PMCID: PMC10933315 DOI: 10.1038/s41467-024-46171-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Accepted: 02/15/2024] [Indexed: 03/14/2024] Open
Abstract
Astronomical forcing of Earth's climate is embedded in the rhythms of stratigraphic records, most famously as short-period (104-105 year) Milankovitch cycles. Astronomical grand cycles with periods of millions of years also modulate climate variability but have been detected in relatively few proxy records. Here, we apply spectral analysis to a dataset of Cenozoic deep-sea hiatuses to reveal a ~2.4 Myr eccentricity signal, disrupted by episodes of major tectonic forcing. We propose that maxima in the hiatus cycles correspond to orbitally-forced intensification of deep-water circulation and erosive bottom current activity, linked to eccentricity maxima and peaks in insolation and seasonality. A prominent episode of cyclicity disturbance coincides with the Paleocene-Eocene Thermal Maximum (PETM) at ~56 Myr ago, and correlates with a chaotic orbital transition in the Solar System evident in several astronomical solutions. This hints at a potential intriguing coupling between the PETM and Solar System chaos.
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Affiliation(s)
- Adriana Dutkiewicz
- EarthByte Group, School of Geosciences, The University of Sydney, Sydney, NSW, 2006, Australia.
| | - Slah Boulila
- Sorbonne Université, CNRS, Institut des Sciences de la Terre Paris, ISTeP, 75005, Paris, France
- ASD/IMCCE, CNRS‑UMR8028, Observatoire de Paris, PSL University, Sorbonne Université, 75014, Paris, France
| | - R Dietmar Müller
- EarthByte Group, School of Geosciences, The University of Sydney, Sydney, NSW, 2006, Australia
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8
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Maull V, Pla Mauri J, Conde Pueyo N, Solé R. A synthetic microbial Daisyworld: planetary regulation in the test tube. J R Soc Interface 2024; 21:20230585. [PMID: 38321922 PMCID: PMC10847846 DOI: 10.1098/rsif.2023.0585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2023] [Accepted: 01/12/2024] [Indexed: 02/08/2024] Open
Abstract
The idea that the Earth system self-regulates in a habitable state was proposed in the 1970s by James Lovelock, who conjectured that life plays a self-regulatory role on a planetary-level scale. A formal approach to such hypothesis was presented afterwards under a toy model known as the Daisyworld. The model showed how such life-geosphere homeostasis was an emergent property of the system, where two species with different properties adjusted their populations to the changing external environment. So far, this ideal world exists only as a mathematical or computational construct, but it would be desirable to have a real, biological implementation of Lovelock's picture beyond our one biosphere. Inspired by the exploration of synthetic ecosystems using genetic engineering and recent cell factory designs, here we propose a possible implementation for a microbial Daisyworld. This includes: (i) an explicit proposal for an engineered design of a two-strain consortia, using pH as the external, abiotic control parameter and (ii) several theoretical and computational case studies including two, three and multiple species assemblies. The special alternative implementations and their implications in other synthetic biology scenarios, including ecosystem engineering, are outlined.
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Affiliation(s)
- Victor Maull
- Institució Catalana de Recerca i Estudis Avançats, Psg Lluis Companys, Barcelona, Spain
- Complex Systems Lab, Universitat Pompeu Fabra, Barcelona 08003, Spain
| | - Jordi Pla Mauri
- Institució Catalana de Recerca i Estudis Avançats, Psg Lluis Companys, Barcelona, Spain
- Complex Systems Lab, Universitat Pompeu Fabra, Barcelona 08003, Spain
| | - Nuria Conde Pueyo
- Complex Systems Lab, Universitat Pompeu Fabra, Barcelona 08003, Spain
- EMBL Barcelona, European Molecular Biology Laboratory (EMBL), Barcelona 08003, Spain
| | - Ricard Solé
- Institució Catalana de Recerca i Estudis Avançats, Psg Lluis Companys, Barcelona, Spain
- Complex Systems Lab, Universitat Pompeu Fabra, Barcelona 08003, Spain
- Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA
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9
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Kahanamoku-Meyer SS, Samuels-Fair M, Kamel SM, Stewart D, Wu B, Kahn LX, Titcomb M, Mei YA, Bridge RC, Li YS, Sinco C, Moreno J, Epino JT, Gonzalez-Marin G, Latt C, Fergus H, Duijnstee IAP, Finnegan S. An 800-year record of benthic foraminifer images and 2D morphometrics from the Santa Barbara Basin. Sci Data 2024; 11:144. [PMID: 38291058 PMCID: PMC10828449 DOI: 10.1038/s41597-024-02934-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Accepted: 01/09/2024] [Indexed: 02/01/2024] Open
Abstract
The Santa Barbara Basin is an extraordinary archive of environmental and ecological change, where varved sediments preserve microfossils that provide an annual to decadal record of the dynamics of surrounding ecosystems. Of the microfossils preserved in these sediments, benthic foraminifera are the most abundant seafloor-dwelling organisms. While they have been extensively utilized for geochemical and paleoceanographic work, studies of their morphology are lacking. Here we use a high-throughput imaging method (AutoMorph) designed to extract 2D data from photographic images of fossils to produce a large image and 2D shape dataset of recent benthic foraminifera from two core records sampled from the center of the Santa Barbara Basin that span an ~800-year-long interval during the Common Era (1249-2008 CE). Information on more than 36,000 objects is included, of which more than 22,000 are complete or partially-damaged benthic foraminifera. The dataset also includes other biogenic microfossils including ostracods, pteropods, diatoms, radiolarians, fish teeth, and shark dermal denticles. We describe our sample preparation, imaging, and identification techniques, and outline potential data uses.
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Affiliation(s)
- Sara S Kahanamoku-Meyer
- Department of Integrative Biology and Museum of Paleontology, University of California at Berkeley, Berkeley, CA, 94720, USA.
- School of Ocean and Earth Sciences and Technology, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA.
| | - Maya Samuels-Fair
- Department of Integrative Biology and Museum of Paleontology, University of California at Berkeley, Berkeley, CA, 94720, USA
- School of Ocean and Earth Sciences and Technology, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA
| | - Sarah M Kamel
- Department of Psychology, University of California at Berkeley, Berkeley, CA, 94720, USA
- Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Da'shaun Stewart
- Department of Environmental Science, Policy, and Management, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Bryan Wu
- Department of Electrical Engineering and Computer Sciences, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Leah X Kahn
- Department of Integrative Biology and Museum of Paleontology, University of California at Berkeley, Berkeley, CA, 94720, USA
- Department of Earth and Planetary Science, University of California at Berkeley, Berkeley, CA, 94720, USA
- School of Ocean and Earth Sciences and Technology, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA
| | - Max Titcomb
- Scripps Institution of Oceanography, University of California at San Diego, La Jolla, CA, 92093, USA
| | - Yingyan Alyssa Mei
- Department of Integrative Biology and Museum of Paleontology, University of California at Berkeley, Berkeley, CA, 94720, USA
- School of Ocean and Earth Sciences and Technology, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA
| | - R Cheyenne Bridge
- Department of Earth and Planetary Science, University of California at Berkeley, Berkeley, CA, 94720, USA
- College of Chemistry, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Yuerong Sophie Li
- Department of Environmental Science, Policy, and Management, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Carolina Sinco
- Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Julissa Moreno
- Department of Environmental Science, Policy, and Management, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Josef T Epino
- Department of Sociology, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Gerson Gonzalez-Marin
- Department of Environmental Science, Policy, and Management, University of California at Berkeley, Berkeley, CA, 94720, USA
- Department of Earth and Planetary Science, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Chloe Latt
- Department of Environmental Science, Policy, and Management, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Heather Fergus
- Department of Environmental Science, Policy, and Management, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Ivo A P Duijnstee
- Department of Integrative Biology and Museum of Paleontology, University of California at Berkeley, Berkeley, CA, 94720, USA
- School of Ocean and Earth Sciences and Technology, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA
| | - Seth Finnegan
- Department of Integrative Biology and Museum of Paleontology, University of California at Berkeley, Berkeley, CA, 94720, USA
- School of Ocean and Earth Sciences and Technology, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA
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10
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Finnegan S, Harnik PG, Lockwood R, Lotze HK, McClenachan L, Kahanamoku SS. Using the Fossil Record to Understand Extinction Risk and Inform Marine Conservation in a Changing World. ANNUAL REVIEW OF MARINE SCIENCE 2024; 16:307-333. [PMID: 37683272 DOI: 10.1146/annurev-marine-021723-095235] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/10/2023]
Abstract
Understanding the long-term effects of ongoing global environmental change on marine ecosystems requires a cross-disciplinary approach. Deep-time and recent fossil records can contribute by identifying traits and environmental conditions associated with elevated extinction risk during analogous events in the geologic past and by providing baseline data that can be used to assess historical change and set management and restoration targets and benchmarks. Here, we review the ecological and environmental information available in the marine fossil record and discuss how these archives can be used to inform current extinction risk assessments as well as marine conservation strategies and decision-making at global to local scales. As we consider future research directions in deep-time and conservationpaleobiology, we emphasize the need for coproduced research that unites researchers, conservation practitioners, and policymakers with the communities for whom the impacts of climate and global change are most imminent.
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Affiliation(s)
- Seth Finnegan
- Department of Integrative Biology, University of California, Berkeley, California, USA; ,
| | - Paul G Harnik
- Department of Earth and Environmental Geosciences, Colgate University, Hamilton, New York, USA;
| | - Rowan Lockwood
- Department of Geology, William & Mary, Williamsburg, Virginia, USA;
| | - Heike K Lotze
- Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada;
| | - Loren McClenachan
- Department of History and School of Environmental Studies, University of Victoria, Victoria, British Columbia, Canada;
| | - Sara S Kahanamoku
- Department of Integrative Biology, University of California, Berkeley, California, USA; ,
- Hawai'i Sea Grant College Program, University of Hawai'i at Mānoa, Honolulu, Hawai'i, USA
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11
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Yan W, Wang Z, Pei Y, Zhou B. Adaptive responses of eelgrass (Zostera marina L.) to ocean warming and acidification. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 206:108257. [PMID: 38064900 DOI: 10.1016/j.plaphy.2023.108257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2023] [Revised: 11/12/2023] [Accepted: 11/30/2023] [Indexed: 02/15/2024]
Abstract
Ocean warming (OW) and ocean acidification (OA), driven by rapid global warming accelerating at unprecedented rates, are profoundly impacting the stability of seagrass ecosystems. Yet, our current understanding of the effects of OW and OA on seagrass remains constrained. Herein, we investigated the response of eelgrass (Zostera marina L.), a representative seagrass species, to OW and OA through comprehensive transcriptomic and metabolomic analyses. The results showed notable variations in plant performance under varying conditions: OW, OA, and OWA (a combination of both conditions). Specifically, under average oceanic temperature conditions for eelgrass growth over the past 20 years -from May to November-OA promoted the production of differentially expressed genes and metabolites associated with alanine, aspartate, and glutamate metabolism, as well as starch and sucrose metabolism. Under warming condition, eelgrass was resistant to OA by accelerating galactose metabolism, along with glycine, serine, and threonine metabolism, as well as the tricarboxylic acid (TCA) cycle. Under the combined OW and OA condition, eelgrass stimulated fructose and mannose metabolism, glycolysis, and carbon fixation, in addition to galactose metabolism and the TCA cycle to face the interplay. Our findings suggest that eelgrass exhibits adaptive capacity by inducing different metabolites and associated genes, primarily connected with carbon and nitrogen metabolism, in response to varying degrees of OW and OA. The data generated here support the exploration of mechanisms underlying seagrass responses to environmental fluctuations, which hold critical significance for the future conservation and management of these ecosystems.
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Affiliation(s)
- Wenjie Yan
- Key Laboratory of Mariculture (Ocean University of China), Ministry of Education, Qingdao, 266003, China.
| | - Zhaohua Wang
- First Institute of Oceanography, MNR, Qingdao, 266061, China
| | - Yanzhao Pei
- College of Marine Life Science, Ocean University of China, Qingdao, 266003, China
| | - Bin Zhou
- College of Marine Life Science, Ocean University of China, Qingdao, 266003, China.
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12
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Núñez-Flores M, Solórzano A, Avaria-Llautureo J, Gomez-Uchida D, López-González PJ. Diversification dynamics of a common deep-sea octocoral family linked to the Paleocene-Eocene thermal maximum. Mol Phylogenet Evol 2024; 190:107945. [PMID: 37863452 DOI: 10.1016/j.ympev.2023.107945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Revised: 10/16/2023] [Accepted: 10/17/2023] [Indexed: 10/22/2023]
Abstract
The deep-sea has experienced dramatic changes in physical and chemical variables in the geological past. However, little is known about how deep-sea species richness responded to such changes over time and space. Here, we studied the diversification dynamics of one of the most diverse octocorallian families inhabiting deep sea benthonic environments worldwide and sustaining highly diverse ecosystems, Primnoidae. A newly dated species-level phylogeny was constructed to infer their ancestral geographic locations and dispersal rates initially. Then, we tested whether their global and regional (the Southern Ocean) diversification dynamics were mediated by dispersal rate and abiotic factors as changes in ocean geochemistry. Finally, we tested whether primnoids showed changes in speciation and extinction at discrete time points. Our results suggested primnoids likely originated in the southwestern Pacific Ocean during the Lower Cretaceous ∼112 Ma, with further dispersal after the physical separation of continental landmasses along the late Mesozoic and Cenozoic. Only the speciation rate of the Southern Ocean primnoids showed a significant correlation to ocean chemistry. Moreover, the Paleocene-Eocene thermal maximum marked a significant increase in the diversification of primnoids at global and regional scales. Our results provide new perspectives on the macroevolutionary and biogeographic patterns of an ecologically important benthic organism typically found in deep-sea environments.
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Affiliation(s)
- Mónica Núñez-Flores
- Centro de Investigación de Estudios Avanzados del Maule, Vicerrectoría de Investigación y Postgrado Universidad Católica del Maule, Talca, Chile; Laboratorio Ecología de Abejas, Departamento de Biología y Química, Facultad de Ciencias Básicas, Universidad Católica del Maule, Talca, Chile.
| | - Andrés Solórzano
- Escuela de Geología, Departamento de Biología y Química, Facultad de Ciencias Básicas, Universidad Católica del Maule, Talca, Chile
| | | | - Daniel Gomez-Uchida
- Genomics in Ecology, Evolution, and Conservation Laboratory (GEECLAB), Department of Zoology, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Concepción, Chile
| | - Pablo J López-González
- Biodiversidad y Ecología Acuática. Departamento de Zoología, Facultad de Biología, Universidad de Sevilla, Reina Mercedes 6, 41012 Sevilla, Spain
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13
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Watkins A. Scaling procedures in climate science: Using temporal scaling to identify a paleoclimate analogue. STUDIES IN HISTORY AND PHILOSOPHY OF SCIENCE 2023; 102:31-44. [PMID: 37804549 DOI: 10.1016/j.shpsa.2023.09.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Revised: 08/22/2023] [Accepted: 09/23/2023] [Indexed: 10/09/2023]
Abstract
Using past episodes of climate change as a source of evidence to inform our projections about contemporary climate change requires establishing the extent to which episodes in the deep past are analogous to the current crisis. However, many scientists claim that contemporary rates of climate change (e.g., rates of carbon emissions or temperature change) are unprecedented, including compared to episodes in the deep past. If so, this would limit the utility of paleoclimate analogues. In this paper, I show how a data adjustment procedure called "temporal scaling," which must be applied to both contemporary and past rate data, complicates the claim that contemporary rates are truly unprecedented. On top of giving actionable recommendations to scientists, this paper advances the philosophical literature concerning the use of models that are known to be somewhat disanalogous to their target systems.
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Affiliation(s)
- Aja Watkins
- University of Wisconsin-Madison; Madison, WI, USA.
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14
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Lomakina AV, Bukin SV, Pogodaeva TV, Turchyn AV, Khlystov OM, Khabuev AV, Ivanov VG, Krylov AA, Zemskaya TI. Microbial diversity and authigenic siderite mediation in sediments surrounding the Kedr-1 mud volcano, Lake Baikal. GEOBIOLOGY 2023; 21:770-790. [PMID: 37698260 DOI: 10.1111/gbi.12575] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Revised: 08/07/2023] [Accepted: 08/29/2023] [Indexed: 09/13/2023]
Abstract
The gas hydrate-bearing structure-mud volcano Kedr-1 (Lake Baikal, southern basin)-is located near the coal-bearing sediments of the Tankhoy formation of Oligocene-Miocene age and can be an ideal source of gas-saturated fluid. A significant amount of siderite minerals (FeCO3 ) were collected from sediments at depths ranging from 0.5 to 327 cm below the lake floor (cmblf). An important feature of these carbonate minerals is the extremely strong enrichment in the heavy 13 C isotope, reaching values of +33.3‰ VPDB. The δ13 C of the siderite minerals, as well as their morphology and elemental composition, and the δ13 CDIC of the co-existing pore water, differed across layers of the core, which implies at least two generations of siderite formation. Here, we leverage mineralogical and geochemical data with 16S rRNA data from the microbial communities in sediments surrounding layers containing siderite minerals. Statistical data reveal the formation of three clusters of microbial communities based on taxonomical composition, key taxa among bacteria and archaea, and environmental parameters. Diversity and richness estimators decrease with sediment depth, with several similar prevailing clades located at the bottom of the core. Most of the taxa in the deep sediments could be associated with putative metabolisms involving organotrophic fermentation (Bathyarchaeia, Caldatribacteriota, and Chloroflexota). Various groups of methanogens (Methanoregulaceae, Methanosaetaceae, and Methanomassiliicoccales) and methanotrophic (Methanoperedenaceae) archaea are present in the sediment at variable relative abundances throughout the sampled depth. Based on the physicochemical characteristics of the sediment, carbon isotope analysis of carbonate minerals and DIC, and phylogenetic analysis of individual taxa and their metabolic potential, we present several models for subsurface siderite precipitation in Lake Baikal sediments.
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Affiliation(s)
| | | | | | | | | | | | | | - Aleksey A Krylov
- Limnological Institute, SB RAS, Irkutsk, Russia
- VNIIOkeangeologia, St. Petersburg, Russia
- Institute of Earth Science, St Petersburg State University, St. Petersburg, Russia
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15
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Sundin J. The effects of ocean acidification on fishes - history and future outlook. JOURNAL OF FISH BIOLOGY 2023; 103:765-772. [PMID: 36648022 DOI: 10.1111/jfb.15323] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Accepted: 01/14/2023] [Indexed: 06/17/2023]
Abstract
The effects of increased levels of carbon dioxide (CO2 ) on the Earth's temperature have been known since the end of the 19th century. It was long believed that the oceans' buffering capacity would counteract any effects of dissolved CO2 in marine environments, but during recent decades, many studies have reported detrimental effects of ocean acidification on aquatic organisms. The most prominent effects can be found within the field of behavioural ecology, e.g., complete reversal of predator avoidance behaviour in CO2 -exposed coral reef fish. Some of the studies have been very influential, receiving hundreds of citations over recent years. The results have also been conveyed to policymakers and publicized in prominent media outlets for the general public. Those extreme effects of ocean acidification on fish behaviour have, however, spurred controversy, given that more than a century of research suggests that there are few or no negative effects of elevated CO2 on fish physiology. This is due to sophisticated acid-base regulatory mechanisms that should enable their resilience to near-future increases in CO2 . In addition, an extreme "decline effect" has recently been shown in the literature regarding ocean acidification and fish behaviour, and independent research groups have been unable to replicate some of the most profound effects. Here, the author presents a brief historical overview on the effects of elevated CO2 and ocean acidification on fishes. This historical recap is warranted because earlier work, prior to a recent (c. 10 year) explosion in interest, is often overlooked in today's ocean acidification studies, despite its value to the field. Based on the historical data and the current knowledge status, the author suggests future strategies with the aim to improve research rigour and clarify the understanding of the effects of ocean acidification on fishes.
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Affiliation(s)
- Josefin Sundin
- Department of Aquatic Resources, Swedish University of Agricultural Sciences, Drottningholm, Sweden
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16
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Yan W, Wang Z, Pei Y, Zhou B. How does ocean acidification affect Zostera marina during a marine heatwave? MARINE POLLUTION BULLETIN 2023; 194:115394. [PMID: 37598524 DOI: 10.1016/j.marpolbul.2023.115394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2023] [Revised: 08/02/2023] [Accepted: 08/04/2023] [Indexed: 08/22/2023]
Abstract
Extreme ocean events caused by global warming, such as marine heatwaves (MHWs) and ocean acidification (OA), are projected to intensify. A combination of extreme events may have severe consequences for marine ecosystems. Zostera marina was selected to understand how seagrass adapts to OA in extremely hot conditions. By combining morphology, transcriptomics, and metabolomics under mesoscale experimental conditions, we systematically investigated the response characteristics of Z. marina. Extremely high temperatures had a pronounced effect on growth, and the combined effect of OA mitigated the inhibitory effect of MHW. Both transcriptomic and metabolomic results showed that Z. marina resisted OA and MHW by upregulating the TCA cycle, glycolysis, amino acid metabolism, and relevant genes, as well as by activating the antioxidant system. The results of this study serve to improve our understanding of dual effects of factors of climate change on seagrass and may be used to direct future management and conservation efforts.
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Affiliation(s)
- Wenjie Yan
- Key Laboratory of Mariculture, Ocean University of China, Ministry of Education, Qingdao 266003, China.
| | - Zhaohua Wang
- First Institute of Oceanography, MNR, Qingdao 266061, China
| | - Yanzhao Pei
- College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China
| | - Bin Zhou
- College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.
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17
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Hoefs J, Harmon RS. Isotopic history of seawater: the stable isotope character of the global ocean at present and in the geological past. ISOTOPES IN ENVIRONMENTAL AND HEALTH STUDIES 2023; 59:349-411. [PMID: 37877261 DOI: 10.1080/10256016.2023.2271127] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2023] [Accepted: 09/10/2023] [Indexed: 10/26/2023]
Abstract
After the atmosphere, the ocean is the most well-mixed and homogeneous global geochemical reservoir. Both physical and biological processes generate elemental and isotope variations in seawater. Contrasting geochemical behaviors cause elements to be susceptible to different fractionation mechanisms, with their isotopes providing unique insights into the composition and evolution of the ocean over the course of geological history. Supplementing the traditional stable isotopes (H, C, O, N, S) that provide information about ocean processes and past environmental conditions, radiogenic isotope (Sr, Nd, Os, Pb, U) systems can be used as time markers, indicators of terrestrial weathering, and ocean water mass mixing. Recent instrumentation advances have made possible the measurement of natural stable isotope variations produced by both mass-dependent and mass-independent fractionation for an ever-increasing number of metal elements (e.g. Li, B, Mg, Si, Ca, V, Cr, Fe, Ni, Cu, Zn, Se, Mo, Cd, Tl, U). The major emphasis in this review is on the isotopic composition of the light elements based on a comparatively large literature. Unlike O, H and S, the stable isotopes of C, N and Si do not have a constant isotopic composition in the modern ocean. The major cations Ca, Mg, and Sr fixed in carbonate shells provide the best proxies for reconstruction of the composition of the ocean in the past. Exhibiting large isotope enrichments in ocean water, B and Li are suitable for the investigation of water/rock interactions and can act as monitors of former oceanic pH. The bioessential elements Zn, Cd, and Ni are indicators of paleoproductivity in the ocean. Characteristic isotope enrichments or depletions of the multivalent elements V, Cr, Fe, Se, Mo, and U record the past redox state of the ocean/atmosphere system. Case studies describe how isotopes have been used to define the seawater composition in the geological past.
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Affiliation(s)
- Jochen Hoefs
- Geowissenschaftliches Zentrum, Universität Göttingen, Göttingen, Germany
| | - Russell S Harmon
- Department of Marine, Earth, and Atmospheric Sciences, North Carolina State University, Raleigh, NC, USA
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18
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Couce E, Cowburn B, Clare D, Bluemel JK. Paris Agreement could prevent regional mass extinctions of coral species. GLOBAL CHANGE BIOLOGY 2023; 29:3794-3805. [PMID: 37073735 DOI: 10.1111/gcb.16690] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Revised: 02/13/2023] [Accepted: 03/02/2023] [Indexed: 05/03/2023]
Abstract
Coral reef ecosystems are expected to undergo significant declines over the coming decades as oceans become warmer and more acidic. We investigate the environmental tolerances of over 650 Scleractinian coral species based on the conditions found within their present-day ranges and in areas where they are currently absent but could potentially reach via larval dispersal. These "environmental envelopes" and connectivity constraints are then used to develop global forecasts for potential coral species richness under two emission scenarios, representing the Paris Agreement target ("SSP1-2.6") and high levels of emissions ("SSP5-8.5"). Although we do not directly predict coral mortality or adaptation, the projected changes to environmental suitability suggest considerable declines in coral species richness for the majority of the world's tropical coral reefs, with a net loss in average local richness of 73% (Paris Agreement) to 91% (High Emissions) by 2080-2090 and particularly large declines across sites in the Great Barrier Reef, Coral Sea, Western Indian Ocean, and Caribbean. However, at the regional scale, we find that environmental suitability for the majority of coral species can be largely maintained under the Paris Agreement target, with 0%-30% potential net species lost in most regions (increasing to 50% for the Great Barrier Reef) as opposed to 80%-90% losses under High Emissions. Projections for subtropical areas suggest that range expansion will give rise to coral reefs with low species richness (typically 10-20 coral species per region) and will not meaningfully offset declines in the tropics. This work represents the first global projection of coral species richness under oceanic warming and acidification. Our results highlight the critical importance of mitigating climate change to avoid potentially massive extinctions of coral species.
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Affiliation(s)
- Elena Couce
- Centre for Environment, Fisheries & Aquaculture Science (Cefas), Pakefield Road, Lowestoft, NR33 0HT, UK
- School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, UK
| | - Benjamin Cowburn
- Centre for Environment, Fisheries & Aquaculture Science (Cefas), Pakefield Road, Lowestoft, NR33 0HT, UK
| | - David Clare
- Centre for Environment, Fisheries & Aquaculture Science (Cefas), Pakefield Road, Lowestoft, NR33 0HT, UK
| | - Joanna K Bluemel
- Centre for Environment, Fisheries & Aquaculture Science (Cefas), Barrack Road, Weymouth, DT4 8UB, UK
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19
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Ujiié Y, Ishitani Y, Nagai Y, Takaki Y, Toyofuku T, Ishii S. Unique evolution of foraminiferal calcification to survive global changes. SCIENCE ADVANCES 2023; 9:eadd3584. [PMID: 37343099 DOI: 10.1126/sciadv.add3584] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 05/15/2023] [Indexed: 06/23/2023]
Abstract
Foraminifera, the most ancient known calcium carbonate-producing eukaryotes, are crucial players in global biogeochemical cycles and well-used environmental indicators in biogeosciences. However, little is known about their calcification mechanisms. This impedes understanding the organismal responses to ocean acidification, which alters marine calcium carbonate production, potentially leading to biogeochemical cycle changes. We conducted comparative single-cell transcriptomics and fluorescent microscopy and identified calcium ion (Ca2+) transport/secretion genes and α-carbonic anhydrases that control calcification in a foraminifer. They actively take up Ca2+ to boost mitochondrial adenosine triphosphate synthesis during calcification but need to pump excess intracellular Ca2+ to the calcification site to prevent cell death. Unique α-carbonic anhydrase genes induce the generation of bicarbonate and proton from multiple CO2 sources. These control mechanisms have evolved independently since the Precambrian to enable the development of large cells and calcification despite decreasing Ca2+ concentrations and pH in seawater. The present findings provide previously unknown insights into the calcification mechanisms and their subsequent function in enduring ocean acidification.
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Affiliation(s)
- Yurika Ujiié
- Marine Core Research Institute, Kochi University, Kōchi, Japan
| | - Yoshiyuki Ishitani
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan
| | - Yukiko Nagai
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan
- National Museum of Nature and Science, Tokyo, Japan
| | - Yoshihiro Takaki
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan
| | - Takashi Toyofuku
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan
- Tokyo University of Marine Science and Technology (TUMSAT), Tokyo, Japan
| | - Shun'ichi Ishii
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan
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20
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Li H, Zhang J, Ge X, Chen S, Ma Z. The Effects of Short-Term Exposure to pH Reduction on the Behavioral and Physiological Parameters of Juvenile Black Rockfish ( Sebastes schlegelii). BIOLOGY 2023; 12:876. [PMID: 37372160 DOI: 10.3390/biology12060876] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Revised: 05/18/2023] [Accepted: 06/13/2023] [Indexed: 06/29/2023]
Abstract
Coastal areas are subject to greater pH fluctuation and more rapid pH decline as a result of both natural and anthropogenic influences in contrast to open ocean environments. Such variations in pH have the potential to pose a threat to the survival and physiological function of offshore fishes. With the aim of evaluating the impact of short-term pH reduction on the behavioral performance and physiological response of costal fish, the black rockfish (Sebastes schlegelii), one of the principal stock-enhanced species, was examined. In the present study, juveniles of the black rockfish with a mean body length of 6.9 ± 0.3 cm and weight of 8.5 ± 0.5 g were exposed to a series of pHs, 7.0, 7.2, 7.4, 7.6, 7.8, and normal seawater (pH 8.0) for 96 h. At the predetermined time points post-exposure (i.e., 0, 12, 24, 48, and 96 h), fish movement behavior was recorded and the specimens were sampled to assess their physiological responses. The results indicate that the lowered pH environment (pH 7.0-7.8) elicited a significant increase in highly mobile behavior, a decrease in immobile behavior, and a significant rise in the metabolic levels of the black rockfish juveniles. Specifically, carbohydrate metabolism was significantly elevated in the pH 7.2 and 7.4 treatments, while lipid metabolism was significantly increased in the pH 7.0, 7.4, and 7.8 treatments. The results of the present study indicate that short-term reductions in pH could ramp up boldness and boost energy expenditure in the black rockfish juveniles, leading to an increased metabolic cost. Additionally, the present investigation revealed that the black rockfish juveniles were capable of adapting to a short-term pH reduction. The findings may provide insight into the underlying physiological mechanisms that govern fish responses to potential decreases in seawater pH in the future.
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Affiliation(s)
- Haixia Li
- Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian 116023, China
- College of Marine Technology and Environment, Dalian Ocean University, Dalian 116023, China
| | - Jia Zhang
- Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian 116023, China
- College of Marine Technology and Environment, Dalian Ocean University, Dalian 116023, China
| | - Xiaoyu Ge
- Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian 116023, China
- College of Marine Technology and Environment, Dalian Ocean University, Dalian 116023, China
| | - Songmeng Chen
- Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian 116023, China
- College of Marine Technology and Environment, Dalian Ocean University, Dalian 116023, China
| | - Zhen Ma
- Key Laboratory of Environment Controlled Aquaculture, Ministry of Education, Dalian 116023, China
- College of Marine Technology and Environment, Dalian Ocean University, Dalian 116023, China
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21
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Yusup Y, Swesi AE, Sigid MF, Almdhun HM, Jamshidi EJ. The relationship between carbon dioxide flux and environmental parameters at a tropical coastal sea on different timescales. MARINE POLLUTION BULLETIN 2023; 193:115106. [PMID: 37302202 DOI: 10.1016/j.marpolbul.2023.115106] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Revised: 05/21/2023] [Accepted: 05/25/2023] [Indexed: 06/13/2023]
Abstract
This paper analyzes CO2 flux between the atmosphere and a tropical coastal sea using the eddy covariance technique. Coastal carbon dioxide flux studies are limited, particularly in tropical regions. Data was collected from the study site in Pulau Pinang, Malaysia, since 2015. The research found that the site is a moderate CO2 sink and experiences seasonal monsoonal changes that affect its carbon-sink or carbon-source capability. The analysis showed that the coastal sea systematically shifted from being a carbon-sink at night to a weak carbon-source during the day possibly due to cause by the synergistic influence of wind speed and seawater temperature. The CO2 flux are also influenced by small-scale, unpredictable winds, limited fetch, developing waves, and high-buoyancy conditions caused by low wind speeds and an unstable surface layer. Furthermore, it exhibited a linear relationship with wind speed. In stable conditions, the flux was influenced by wind speed and drag coefficient, while in unstable conditions, it was mostly controlled by friction velocity and atmospheric stability. These findings could improve our understanding of the critical factors that drive CO2 flux at the tropical coast.
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Affiliation(s)
- Yusri Yusup
- Environmental Technology Division, School of Industrial Technology, Universiti Sains Malaysia, Penang 11800, Malaysia; Centre for Marine and Coastal Studies (CEMACS), Universiti Sains Malaysia, Pulau Pinang, Malaysia; Renewable Biomass Transformation Cluster, School of Industrial Technology, Universiti Sains Malaysia, Penang 11800, Malaysia.
| | - Abdulghani Essayah Swesi
- Environmental Technology Division, School of Industrial Technology, Universiti Sains Malaysia, Penang 11800, Malaysia; Chemical Engineering Department, Higher Institute of Science & Technology Souq Khamis-Emsihel, Tripoli 99002, Libya
| | - Muhammad Fikri Sigid
- Environmental Technology Division, School of Industrial Technology, Universiti Sains Malaysia, Penang 11800, Malaysia
| | - Haitem M Almdhun
- Environmental Technology Division, School of Industrial Technology, Universiti Sains Malaysia, Penang 11800, Malaysia
| | - Ehsan Jolous Jamshidi
- Environmental Technology Division, School of Industrial Technology, Universiti Sains Malaysia, Penang 11800, Malaysia
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22
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Di P, Li N, Chen L, Feng J, Chen D. Elevated nutrients and surface chlorophyll-α associated with natural methane seeps in the Haima cold seep area of the Qiongdongnan Basin, northern South China Sea. MARINE POLLUTION BULLETIN 2023; 191:114873. [PMID: 37031642 DOI: 10.1016/j.marpolbul.2023.114873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2022] [Revised: 03/20/2023] [Accepted: 03/21/2023] [Indexed: 05/13/2023]
Abstract
Cold seeps are a significant source of methane to the ocean. However, nutrients and Chl-α in the euphotic layer overlying cold seeps have been poorly studied. Variations in Chl-α, nutrients, environmental parameters, and CH4 concentrations in the Haima cold seeps were analyzed. Results show that the overlying water exhibits a typical low nutrient and low Chl-α marine environment. Phosphate and Chl-α were significantly elevated, and the average SCM in cold seeps was much higher than that in control stations. Spearman correlation analysis indicated Chl-α in cold seep was positively correlated with salinity and negatively with nutrient and CH4 concentrations. It implied that the CH4 concentrations may promote the increase of Chl-α, and may be linked to CH4 plumes, bringing cold, nutrient-rich waters to the thermocline. However, due to the CH4 plumes hardly to track, more sampling is needed to determine the effects on Chl-α and phytoplankton in the euphotic layer.
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Affiliation(s)
- Pengfei Di
- Key Laboratory of Ocean and Marginal Sea Geology, South China Sea Institute of Oceanology, Sanya Institute of Oceanology, Innovation Academy of South China Sea Ecology and Environmental Engineering, Chinese Academy of Sciences, Guangzhou 510301, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511481, China.
| | - Niu Li
- Key Laboratory of Ocean and Marginal Sea Geology, South China Sea Institute of Oceanology, Sanya Institute of Oceanology, Innovation Academy of South China Sea Ecology and Environmental Engineering, Chinese Academy of Sciences, Guangzhou 510301, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511481, China
| | - Linying Chen
- Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai 201306, China
| | - Junxi Feng
- MNR Key Laboratory of Marine Mineral Resources, Guangzhou Marine Geological Survey, Ministry of Natural Resources, Guangzhou, Guangdong 510075, China
| | - Duofu Chen
- Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai 201306, China
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23
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Lee YH, Kim MS, Lee Y, Kim DH, Lee JS. Nanoplastics induce epigenetic signatures of transgenerational impairments associated with reproduction in copepods under ocean acidification. JOURNAL OF HAZARDOUS MATERIALS 2023; 449:131037. [PMID: 36842400 DOI: 10.1016/j.jhazmat.2023.131037] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2022] [Revised: 02/15/2023] [Accepted: 02/17/2023] [Indexed: 06/18/2023]
Abstract
Ocean acidification (OA) is one of many major global climate changes that pose a variety of risks to marine ecosystems in different ways. Meanwhile, there is growing concern about how nanoplastics (NPs) affect marine ecosystems. Combined exposure of marine organisms to OA and NPs is inevitable, but their interactive effects remain poorly understood. In this study, we investigated the multi- and transgenerational toxicity of NPs on copepods under OA conditions for ten generations. The findings revealed that OA and NPs have a synergistic negative effect on copepod reproduction across generations. In particular, the transgenerational groups showed reproductive impairments in the F1 and F2 generations (F1T and F2T), even though they were never exposed to NPs. Moreover, our epigenetic examinations demonstrated that the observed intergenerational reproductive impairments are associated with differential methylation patterns of specific genes, suggesting that the interaction of OA and NPs can pose a significant threat to the sustainability of copepod populations through epigenetic modifications. Overall, our findings provide valuable insight into the intergenerational toxicity and underlying molecular mechanisms of responses to NPs under OA conditions.
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Affiliation(s)
- Young Hwan Lee
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, South Korea
| | - Min-Sub Kim
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, South Korea
| | - Yoseop Lee
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, South Korea
| | - Duck-Hyun Kim
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, South Korea
| | - Jae-Seong Lee
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, South Korea.
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24
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Li C, Wang Y, Wei M, Wang X. The involvement of a novel calmodulin-like protein isoform from oyster Crassostrea gigas in transcription factor regulation provides new insight into acclimation to ocean acidification. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2023; 257:106423. [PMID: 36822075 DOI: 10.1016/j.aquatox.2023.106423] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Revised: 02/06/2023] [Accepted: 02/06/2023] [Indexed: 06/18/2023]
Abstract
Marine organisms need to adapt to improve organismal fitness under ocean acidification (OA). Recent studies have shown that marine calcifiers can achieve acclimation by stimulating calcium binding/signaling pathways. Here, a CaM-like gene (CgCaLP-2) from oyster Crassostrea gigas which typically responded to long-term CO2 exposure (two months) rather than short-term exposure (one week) was characterized. The cloned cDNA was 678 bp and was shorter than the retrieved sequence from NCBI (1125 bp). The two sequences, designated as CgCaLP-2-v1 and CgCaLP-2-v2, were demonstrated to be different splice variants by the genome sequence analysis. Western blotting analysis revealed two bands of 23 kD and 43 kD in mantle and hemocytes, corresponding to predicted molecular weight of CgCaLP-2-v1 and CgCaLP-2-v2, respectively. The isoform CgCaLP-2-v1 (the 23 kD band) was highly stimulated in response to long-term CO2 exposure (42-day and 56-day treatment) in hemocytes and mantle tissue. The fluorescence signal of CgCaLP-2 in mantle and hemocytes became more intensive after long-term CO2 exposure. Besides, in hemocytes, CgCaLP-2 presented a higher localization on the nuclear membrane after long-term CO2 exposure (56 d). The target gene network of CgCaLP-2 was predicted, and a transcription factor (TF) gene annotated as Homeobox protein SIX4 (CgSIX4) showed a similar expressive trend to CgCaLP-2 during CO2 exposure. Suppression of CgCaLP-2 via RNA interference significantly reduced the mRNA expression of CgSIX4. The results suggested that CgCaLP-2 might mediate the Ca2+-CaLP-TF signal transduction pathway under long-term CO2 exposure. This study serves as an example to reveal that alternative splicing is an important mechanism for generation multiple protein isoforms and thus shape the plastic responses under CO2 exposure, providing new insight into the potential acclimation ability of marine calcifiers to future OA.
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Affiliation(s)
- Changmei Li
- Shandong Provincial Key Laboratory of Biochemical Engineering, College of Marine Science and Biological Engineering, Qingdao University of Science and Technology, Qingdao 266042, China
| | - Yilin Wang
- Shandong Provincial Key Laboratory of Biochemical Engineering, College of Marine Science and Biological Engineering, Qingdao University of Science and Technology, Qingdao 266042, China
| | - Manman Wei
- Shandong Provincial Key Laboratory of Biochemical Engineering, College of Marine Science and Biological Engineering, Qingdao University of Science and Technology, Qingdao 266042, China
| | - Xiudan Wang
- Shandong Provincial Key Laboratory of Biochemical Engineering, College of Marine Science and Biological Engineering, Qingdao University of Science and Technology, Qingdao 266042, China; College of Food Science and Engineering, Ocean University of China, Qingdao 266003, China; State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361102, China.
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25
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Ganesh I. EPDM rubber-based membranes for electrochemical water splitting and carbon dioxide reduction reactions. J Solid State Electrochem 2023. [DOI: 10.1007/s10008-023-05479-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2023]
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26
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RNAi Silencing of the Biomineralization Gene Perlucin Impairs Oyster Ability to Cope with Ocean Acidification. Int J Mol Sci 2023; 24:ijms24043661. [PMID: 36835072 PMCID: PMC9961701 DOI: 10.3390/ijms24043661] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Revised: 02/01/2023] [Accepted: 02/07/2023] [Indexed: 02/15/2023] Open
Abstract
Calcifying marine organisms, including the eastern oyster (Crassostrea virginica), are vulnerable to ocean acidification (OA) because it is more difficult to precipitate calcium carbonate (CaCO3). Previous investigations of the molecular mechanisms associated with resilience to OA in C. virginica demonstrated significant differences in single nucleotide polymorphism and gene expression profiles among oysters reared under ambient and OA conditions. Converged evidence generated by both of these approaches highlighted the role of genes related to biomineralization, including perlucins. Here, gene silencing via RNA interference (RNAi) was used to evaluate the protective role of a perlucin gene under OA stress. Larvae were exposed to short dicer-substrate small interfering RNA (DsiRNA-perlucin) to silence the target gene or to one of two control treatments (control DsiRNA or seawater) before cultivation under OA (pH ~7.3) or ambient (pH ~8.2) conditions. Two transfection experiments were performed in parallel, one during fertilization and one during early larval development (6 h post-fertilization), before larval viability, size, development, and shell mineralization were monitored. Silenced oysters under acidification stress were the smallest, had shell abnormalities, and had significantly reduced shell mineralization, thereby suggesting that perlucin significantly helps larvae mitigate the effects of OA.
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Li W, Wang T, Campbell DA, Gao K. Light history modulates growth and photosynthetic responses of a diatom to ocean acidification and UV radiation. MARINE LIFE SCIENCE & TECHNOLOGY 2023; 5:116-125. [PMID: 37073326 PMCID: PMC10077217 DOI: 10.1007/s42995-022-00138-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Accepted: 06/08/2022] [Indexed: 05/03/2023]
Abstract
To examine the synergetic effects of ocean acidification (OA) and light intensity on the photosynthetic performance of marine diatoms, the marine centric diatom Thalassiosira weissflogii was cultured under ambient low CO2 (LC, 390 μatm) and elevated high CO2 (HC, 1000 μatm) levels under low-light (LL, 60 μmol m-2 s-1) or high-light (HL, 220 μmol m-2 s-1) conditions for over 20 generations. HL stimulated the growth rate by 128 and 99% but decreased cell size by 9 and 7% under LC and HC conditions, respectively. However, HC did not change the growth rate under LL but decreased it by 9% under HL. LL combined with HC decreased both maximum quantum yield (F V/F M) and effective quantum yield (Φ PSII), measured under either low or high actinic light. When exposed to UV radiation (UVR), LL-grown cells were more prone to UVA exposure, with higher UVA and UVR inducing inhibition of Φ PSII compared with HL-grown cells. Light use efficiency (α) and maximum relative electron transport rate (rETRmax) were inhibited more in the HC-grown cells when UVR (UVA and UVB) was present, particularly under LL. Our results indicate that the growth light history influences the cell growth and photosynthetic responses to OA and UVR. Supplementary Information The online version contains supplementary material available at 10.1007/s42995-022-00138-x.
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Affiliation(s)
- Wei Li
- State Key Laboratory of Marine Environmental Science & College of Ocean and Earth Science, Xiamen University, Xiamen, 361005 China
- College of Life and Environmental Sciences, Huangshan University, Huangshan, 245041 China
| | - Tifeng Wang
- State Key Laboratory of Marine Environmental Science & College of Ocean and Earth Science, Xiamen University, Xiamen, 361005 China
| | | | - Kunshan Gao
- State Key Laboratory of Marine Environmental Science & College of Ocean and Earth Science, Xiamen University, Xiamen, 361005 China
- Co-innovation Center of Jiangsu Marine Bio-industry Technology, Jiangsu Ocean University, Lianyungang, 222005 China
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28
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Abstract
Living systems are built from a small subset of the atomic elements, including the bulk macronutrients (C,H,N,O,P,S) and ions (Mg,K,Na,Ca) together with a small but variable set of trace elements (micronutrients). Here, we provide a global survey of how chemical elements contribute to life. We define five classes of elements: those that are (i) essential for all life, (ii) essential for many organisms in all three domains of life, (iii) essential or beneficial for many organisms in at least one domain, (iv) beneficial to at least some species, and (v) of no known beneficial use. The ability of cells to sustain life when individual elements are absent or limiting relies on complex physiological and evolutionary mechanisms (elemental economy). This survey of elemental use across the tree of life is encapsulated in a web-based, interactive periodic table that summarizes the roles chemical elements in biology and highlights corresponding mechanisms of elemental economy.
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Affiliation(s)
- Kaleigh A Remick
- Department of Microbiology, Cornell University, New York, NY, United States
| | - John D Helmann
- Department of Microbiology, Cornell University, New York, NY, United States.
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29
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Xu Q, Xu A, Garg S, Moss AB, Chorkendorff I, Bligaard T, Seger B. Enriching Surface-Accessible CO 2 in the Zero-Gap Anion-Exchange-Membrane-Based CO 2 Electrolyzer. Angew Chem Int Ed Engl 2023; 62:e202214383. [PMID: 36374271 PMCID: PMC10108229 DOI: 10.1002/anie.202214383] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Revised: 11/02/2022] [Accepted: 11/14/2022] [Indexed: 11/16/2022]
Abstract
Zero-gap anion exchange membrane (AEM)-based CO2 electrolysis is a promising technology for CO production, however, their performance at elevated current densities still suffers from the low local CO2 concentration due to heavy CO2 neutralization. Herein, via modulating the CO2 feed mode and quantitative analyzing CO2 utilization with the aid of mass transport modeling, we develop a descriptor denoted as the surface-accessible CO2 concentration ([CO2 ]SA ), which enables us to indicate the transient state of the local [CO2 ]/[OH- ] ratio and helps define the limits of CO2 -to-CO conversion. To enrich the [CO2 ]SA , we developed three general strategies: (1) increasing catalyst layer thickness, (2) elevating CO2 pressure, and (3) applying a pulsed electrochemical (PE) method. Notably, an optimized PE method allows to keep the [CO2 ]SA at a high level by utilizing the dynamic balance period of CO2 neutralization. A maximum jCO of 368±28 mA cmgeo -2 was achieved using a commercial silver catalyst.
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Affiliation(s)
- Qiucheng Xu
- Surface Physics and Catalysis (Surf Cat) Section, Department of Physics, Technical University of Denmark, 2800, Kongens, Lyngby, Denmark
| | - Aoni Xu
- CatTheory Center, Department of Physics, Technical University of Denmark, 2800, Kongens, Lyngby, Denmark
| | - Sahil Garg
- Surface Physics and Catalysis (Surf Cat) Section, Department of Physics, Technical University of Denmark, 2800, Kongens, Lyngby, Denmark
| | - Asger B Moss
- Surface Physics and Catalysis (Surf Cat) Section, Department of Physics, Technical University of Denmark, 2800, Kongens, Lyngby, Denmark
| | - Ib Chorkendorff
- Surface Physics and Catalysis (Surf Cat) Section, Department of Physics, Technical University of Denmark, 2800, Kongens, Lyngby, Denmark
| | - Thomas Bligaard
- Department of Energy Conversion and Storage, Technical University of Denmark, 2800, Kongens, Lyngby, Denmark
| | - Brian Seger
- Surface Physics and Catalysis (Surf Cat) Section, Department of Physics, Technical University of Denmark, 2800, Kongens, Lyngby, Denmark
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30
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100 million years of turtle paleoniche dynamics enable the prediction of latitudinal range shifts in a warming world. Curr Biol 2023; 33:109-121.e3. [PMID: 36549298 DOI: 10.1016/j.cub.2022.11.056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2022] [Revised: 10/18/2022] [Accepted: 11/23/2022] [Indexed: 12/24/2022]
Abstract
Past responses to environmental change provide vital baseline data for estimating the potential resilience of extant taxa to future change. Here, we investigate the latitudinal range contraction that terrestrial and freshwater turtles (Testudinata) experienced from the Late Cretaceous to the Paleogene (100.5-23.03 mya) in response to major climatic changes. We apply ecological niche modeling (ENM) to reconstruct turtle niches, using ancient and modern distribution data, paleogeographic reconstructions, and the HadCM3L climate model to quantify their range shifts in the Cretaceous and late Eocene. We then use the insights provided by these models to infer their probable ecological responses to future climate scenarios at different representative concentration pathways (RCPs 4.5 and 8.5 for 2100), which project globally increased temperatures and spreading arid biomes at lower to mid-latitudes. We show that turtle ranges are predicted to expand poleward in the Northern Hemisphere, with decreased habitat suitability at lower latitudes, inverting a trend of latitudinal range contraction that has been prevalent since the Eocene. Trionychids and freshwater turtles can more easily track their niches than Testudinidae and other terrestrial groups. However, habitat destruction and fragmentation at higher latitudes will probably reduce the capability of turtles and tortoises to cope with future climate changes.
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31
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Barreto Filho MM, Lu Z, Walker M, Morris JJ. Community context and pCO 2 impact the transcriptome of the "helper" bacterium Alteromonas in co-culture with picocyanobacteria. ISME COMMUNICATIONS 2022; 2:113. [PMID: 37938752 PMCID: PMC9723591 DOI: 10.1038/s43705-022-00197-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Revised: 10/25/2022] [Accepted: 10/31/2022] [Indexed: 09/20/2023]
Abstract
Many microbial photoautotrophs depend on heterotrophic bacteria for accomplishing essential functions. Environmental changes, however, could alter or eliminate such interactions. We investigated the effects of changing pCO2 on gene transcription in co-cultures of 3 strains of picocyanobacteria (Synechococcus strains CC9311 and WH8102 and Prochlorococcus strain MIT9312) paired with the 'helper' bacterium Alteromonas macleodii EZ55. Co-culture with cyanobacteria resulted in a much higher number of up- and down-regulated genes in EZ55 than pCO2 by itself. Pathway analysis revealed significantly different transcription of genes involved in carbohydrate metabolism, stress response, and chemotaxis, with different patterns of up- or down-regulation in co-culture with different cyanobacterial strains. Gene transcription patterns of organic and inorganic nutrient transporter and catabolism genes in EZ55 suggested resources available in the culture media were altered under elevated (800 ppm) pCO2 conditions. Altogether, changing transcription patterns were consistent with the possibility that the composition of cyanobacterial excretions changed under the two pCO2 regimes, causing extensive ecophysiological changes in both members of the co-cultures. Additionally, significant downregulation of oxidative stress genes in MIT9312/EZ55 cocultures at 800 ppm pCO2 were consistent with a link between the predicted reduced availability of photorespiratory byproducts (i.e., glycolate/2PG) under this condition and observed reductions in internal oxidative stress loads for EZ55, providing a possible explanation for the previously observed lack of "help" provided by EZ55 to MIT9312 under elevated pCO2. If similar broad alterations in microbial ecophysiology occur in the ocean as atmospheric pCO2 increases, they could lead to substantially altered ecosystem functioning and community composition.
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Affiliation(s)
| | - Zhiying Lu
- University of Alabama at Birmingham Department of Biology, 1300 University Blvd CH464, Birmingham, AL, 35294, USA
| | - Melissa Walker
- University of Alabama at Birmingham Department of Biology, 1300 University Blvd CH464, Birmingham, AL, 35294, USA
| | - J Jeffrey Morris
- University of Alabama at Birmingham Department of Biology, 1300 University Blvd CH464, Birmingham, AL, 35294, USA.
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32
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Ding M, Liu H, Lin P, Meng Y, Zheng W, An B, Luan Y, Yu Y, Yu Z, Li Y, Ma J, Chen J, Chen K. A century-long eddy-resolving simulation of global oceanic large- and mesoscale state. Sci Data 2022; 9:691. [PMID: 36369203 PMCID: PMC9652250 DOI: 10.1038/s41597-022-01766-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 10/06/2022] [Indexed: 11/13/2022] Open
Abstract
Investigating oceanic variations at multiple spatial and temporal scales is vital for an in-depth understanding of the ocean response to global climate change. However, the available observational datasets contain uncertainties and deficiencies that leave them insufficient for investigating global ocean variability with long temporal scales and/or meso spatial scales. Here, we present a daily and century-long (1901-2010) global oceanic simulation dataset with high resolution (1/10° horizontal resolution and 55 vertical layers) forced by 6-hour atmospheric data from ERA-20C. Preliminary evaluations demonstrate that this simulation can realistically reproduce the large-scale global ocean circulation and capture the essential features of global surface mesoscale eddies. This long-running high-resolution simulation dataset provides temporally highly resolved oceanic and flux variables. Together with its good performance in simulating the global oceanic state, this eddy-resolving simulation has the potential to help toward a better understanding of ocean variability at multiple spatial and temporal scales.
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Affiliation(s)
- Mengrong Ding
- State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid Dynamics, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
- Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, 316022, China
| | - Hailong Liu
- State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid Dynamics, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China.
- College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, 266071, China.
| | - Pengfei Lin
- State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid Dynamics, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China.
- College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.
| | - Yao Meng
- State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid Dynamics, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
- Centre for Geography and Environmental Science, University of Exeter, Penryn Campus, Cornwall, TR10 9FE, UK
| | - Weipeng Zheng
- State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid Dynamics, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
- College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
- Earth System Numerical Simulation Science Center, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
| | - Bo An
- State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid Dynamics, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
| | - Yihua Luan
- State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid Dynamics, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
- Earth System Numerical Simulation Science Center, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
| | - Yongqiang Yu
- State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid Dynamics, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
- College of Earth and Planetary Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Zipeng Yu
- State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid Dynamics, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
- Earth System Numerical Simulation Science Center, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
| | - Yiwen Li
- State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid Dynamics, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
| | - Jinfeng Ma
- State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid Dynamics, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
| | - Jian Chen
- State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid Dynamics, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
- Beijing Institute of Applied Meteorology, Beijing, 100089, China
| | - Kangjun Chen
- State Key Laboratory of Numerical Modeling for Atmospheric Sciences and Geophysical Fluid Dynamics, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
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33
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Estes JA, Vermeij GJ. History's legacy: Why future progress in ecology demands a view of the past. Ecology 2022; 103:e3788. [PMID: 35718755 DOI: 10.1002/ecy.3788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 05/04/2022] [Accepted: 05/16/2022] [Indexed: 11/06/2022]
Abstract
History has profoundly affected the composition, distribution, and abundances of species in contemporary ecosystems. A full understanding of how ecosystems work and change must therefore take history into account. We offer four well-studied examples illustrating how a knowledge of history has strengthened interpretations of modern systems: the development of molluscan antipredatory defenses in relation to shell-breaking predators; the North Pacific kelp ecosystem with sea otters, smaller predators, sea urchins, and large herbivores; estuarine ecosystems affected by the decline in oysters and other suspension feeders; and the legacy of extinct large herbivores and frugivores in tropical American forests. Many current ecological problems would greatly benefit from a historical perspective. We highlight four of these: soil depletion and tree stunting in forests related to the disappearance of large consumers; the spread of anoxic dead zones in the ocean, which we argue could be mitigated by restoring predator and suspension-feeding guilds; ocean acidification, which would be alleviated by more nutrient recycling by consumers in the aerobic ecosystem; and the relation between species diversity and keystone predators, a foundational concept that is complicated by simplified trophic relationships in modern ecosystems.
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Affiliation(s)
- James A Estes
- Ecology and Evolutionary Biology, University of California-Santa Cruz, Santa Cruz, California, USA
| | - Geerat J Vermeij
- Earth and Planetary Science, University of California-Davis, Davis, California, USA
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34
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Page TM, McDougall C, Bar I, Diaz-Pulido G. Transcriptomic stability or lability explains sensitivity to climate stressors in coralline algae. BMC Genomics 2022; 23:729. [PMID: 36303112 PMCID: PMC9615231 DOI: 10.1186/s12864-022-08931-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Accepted: 10/10/2022] [Indexed: 09/07/2024] Open
Abstract
BACKGROUND Crustose coralline algae (CCA) are calcifying red macroalgae that play important ecological roles including stabilisation of reef frameworks and provision of settlement cues for a range of marine invertebrates. Previous research into the responses of CCA to ocean warming (OW) and ocean acidification (OA) have found magnitude of effect to be species-specific. Response to OW and OA could be linked to divergent underlying molecular processes across species. RESULTS Here we show Sporolithon durum, a species that exhibits low sensitivity to climate stressors, had little change in metabolic performance and did not significantly alter the expression of any genes when exposed to temperature and pH perturbations. In contrast, Porolithon onkodes, a major coral reef builder, reduced photosynthetic rates and had a labile transcriptomic response with over 400 significantly differentially expressed genes, with differential regulation of genes relating to physiological processes such as carbon acquisition and metabolism. The differential gene expression detected in P. onkodes implicates possible key metabolic pathways, including the pentose phosphate pathway, in the stress response of this species. CONCLUSIONS We suggest S. durum is more resistant to OW and OA than P. onkodes, which demonstrated a high sensitivity to climate stressors and may have limited ability for acclimatisation. Understanding changes in gene expression in relation to physiological processes of CCA could help us understand and predict how different species will respond to, and persist in, future ocean conditions predicted for 2100.
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Affiliation(s)
- Tessa M Page
- Griffth University School of Environment and Science Nathan Campus, Griffith University, Nathan, QLD, Australia.
- Australian Rivers Institute Nathan Campus, Griffith University, Nathan, QLD, Australia.
- Coastal and Marine Research Centre Nathan Campus, Griffith University, Gold Coast, QLD, Australia.
- School of Ocean and Earth Science University of Southampton Waterfront Campus, National Oceanography Centre, Southampton, UK.
| | - Carmel McDougall
- Griffth University School of Environment and Science Nathan Campus, Griffith University, Nathan, QLD, Australia
- Australian Rivers Institute Nathan Campus, Griffith University, Nathan, QLD, Australia
- Coastal and Marine Research Centre Nathan Campus, Griffith University, Gold Coast, QLD, Australia
| | - Ido Bar
- Griffth University School of Environment and Science Nathan Campus, Griffith University, Nathan, QLD, Australia
- Centre for Planetary Health and Food Security Nathan Campus, Griffith University, Nathan, QLD, Australia
| | - Guillermo Diaz-Pulido
- Griffth University School of Environment and Science Nathan Campus, Griffith University, Nathan, QLD, Australia.
- Australian Rivers Institute Nathan Campus, Griffith University, Nathan, QLD, Australia.
- Coastal and Marine Research Centre Nathan Campus, Griffith University, Gold Coast, QLD, Australia.
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35
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Virtual 2D map of cyanobacterial proteomes. PLoS One 2022; 17:e0275148. [PMID: 36190972 PMCID: PMC9529120 DOI: 10.1371/journal.pone.0275148] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Accepted: 09/12/2022] [Indexed: 11/05/2022] Open
Abstract
Cyanobacteria are prokaryotic Gram-negative organisms prevalent in nearly all habitats. A detailed proteomics study of Cyanobacteria has not been conducted despite extensive study of their genome sequences. Therefore, we conducted a proteome-wide analysis of the Cyanobacteria proteome and found Calothrix desertica as the largest (680331.825 kDa) and Candidatus synechococcus spongiarum as the smallest (42726.77 kDa) proteome of the cyanobacterial kingdom. A Cyanobacterial proteome encodes 312.018 amino acids per protein, with a molecular weight of 182173.1324 kDa per proteome. The isoelectric point (pI) of the Cyanobacterial proteome ranges from 2.13 to 13.32. It was found that the Cyanobacterial proteome encodes a greater number of acidic-pI proteins, and their average pI is 6.437. The proteins with higher pI are likely to contain repetitive amino acids. A virtual 2D map of Cyanobacterial proteome showed a bimodal distribution of molecular weight and pI. Several proteins within the Cyanobacterial proteome were found to encode Selenocysteine (Sec) amino acid, while Pyrrolysine amino acids were not detected. The study can enable us to generate a high-resolution cell map to monitor proteomic dynamics. Through this computational analysis, we can gain a better understanding of the bias in codon usage by analyzing the amino acid composition of the Cyanobacterial proteome.
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Ruhl M, Hesselbo SP, Jenkyns HC, Xu W, Silva RL, Matthews KJ, Mather TA, Mac Niocaill C, Riding JB. Reduced plate motion controlled timing of Early Jurassic Karoo-Ferrar large igneous province volcanism. SCIENCE ADVANCES 2022; 8:eabo0866. [PMID: 36083904 PMCID: PMC9462690 DOI: 10.1126/sciadv.abo0866] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 07/12/2022] [Indexed: 05/24/2023]
Abstract
Past large igneous province (LIP) emplacement is commonly associated with mantle plume upwelling and led to major carbon emissions. One of Earth's largest past environmental perturbations, the Toarcian oceanic anoxic event (T-OAE; ~183 Ma), has been linked to Karoo-Ferrar LIP emplacement. However, the role of mantle plumes in controlling the onset and timing of LIP magmatism is poorly understood. Using global plate reconstruction models and Lower Toarcian sedimentary mercury (Hg) concentrations, we demonstrate (i) that the T-OAE occurred coevally with Karoo-Ferrar emplacement and (ii) that timing and duration of LIP emplacement was governed by reduced Pangean plate motion, associated with a reversal in plate movement direction. This new model mechanistically links Earth's interior and surficial processes, and the mechanism is consistent with the timing of several of the largest LIP volcanic events throughout Earth history and, thus, the timing of many of Earth's past global climate change and mass extinction events.
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Affiliation(s)
- Micha Ruhl
- Department of Geology, Earth Surface Research Laboratory (ESRL) and SFI Research Centre in Applied Geosciences (iCRAG), Trinity College Dublin, The University of Dublin, College Green, Dublin 2, Ireland
- Department of Earth Sciences, University of Oxford, South Parks Road, OX1 3AN, Oxford, UK
| | - Stephen P. Hesselbo
- Camborne School of Mines and Environment and Sustainability Institute, University of Exeter, Penryn Campus, Treliever Road, Penryn, Cornwall TR10 9FE, UK
| | - Hugh C. Jenkyns
- Department of Earth Sciences, University of Oxford, South Parks Road, OX1 3AN, Oxford, UK
| | - Weimu Xu
- Department of Earth Sciences, University of Oxford, South Parks Road, OX1 3AN, Oxford, UK
- School of Earth Sciences and SFI Research Centre in Applied Geosciences (iCRAG), University College Dublin, Belfield, Dublin 4, Ireland
| | - Ricardo L. Silva
- Department of Geology, Earth Surface Research Laboratory (ESRL) and SFI Research Centre in Applied Geosciences (iCRAG), Trinity College Dublin, The University of Dublin, College Green, Dublin 2, Ireland
- Department of Earth Sciences, Clayton H. Riddell Faculty of Environment, Earth, and Resources, University of Manitoba, 125 Dysart Road, Winnipeg, R3T 2N2, Canada
| | - Kara J. Matthews
- Department of Earth Sciences, University of Oxford, South Parks Road, OX1 3AN, Oxford, UK
- Arctic Institute of North America, University of Calgary, 2500 University Drive NW, ES-1040, Calgary, AB T2N 1N4, Canada
| | - Tamsin A. Mather
- Department of Earth Sciences, University of Oxford, South Parks Road, OX1 3AN, Oxford, UK
| | - Conall Mac Niocaill
- Department of Earth Sciences, University of Oxford, South Parks Road, OX1 3AN, Oxford, UK
| | - James B. Riding
- British Geological Survey, Keyworth, Nottingham NG12 5GG, UK
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Wang X, Li C, Lv Z, Zhang Z, Qiu L. A calcification-related calmodulin-like protein in the oyster Crassostrea gigas mediates the enhanced calcium deposition induced by CO 2 exposure. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 833:155114. [PMID: 35413345 DOI: 10.1016/j.scitotenv.2022.155114] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Revised: 03/19/2022] [Accepted: 04/04/2022] [Indexed: 06/14/2023]
Abstract
Calcium transportation and homeostasis are essential for marine bivalves to maintain basic metabolism and build their shells. Calmodulin-like proteins (CaLPs) are important calcium sensors and buffers and can respond to ocean acidification (OA) in marine calcifiers. However, no further study of their physiological function in calcium metabolism under elevated CO2 has been performed. Here, we identified a novel CaLP (designated CgCaLP) in the Pacific oyster Crassostrea gigas and demonstrated its participation in the calcification process: the mRNA expression level of CgCaLP peaked at the trochophore larval stage and remained high at stages when shells were shaped; the mRNA and protein of CgCaLP were more highly expressed in mantle tissue than in other tissues. Under elevated CO2 levels, the protein expression level of CgCaLP in hemocytes increased, while in contrast, significantly decreased protein levels were detected in gill and mantle tissues. Shell dissolution caused the imbalance of calcium in hemocytes and decreased calcium absorption and transportation demand in gill and mantle tissues, inducing the molecular function allocation of CgCaLP under CO2 exposure. Despite the decreased protein level in mantle tissue, CgCaLP was found to translocate to outer mantle epithelium (OME) cells where condensed calcium-rich deposits (CRDs) were detected. We further demonstrated that CgCaLP mRNA and protein expression levels could respond to seawater Ca2+ availability, suggesting that the calcium deposition capacity of oysters might be enhanced to fight against shell dissolution problems and that CgCaLP might serve as an essential participator of the process. In summary, CgCaLP might enhance calcium deposition under CO2 exposure and thus play a significant and flexible molecular function involved in a compensation strategy of oysters to fight against the acidified ocean.
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Affiliation(s)
- Xiudan Wang
- Shandong Provincial Key Laboratory of Biochemical Engineering, College of Marine Science and Biological Engineering, Qingdao University of Science and Technology, Qingdao 266042, China.
| | - Changmei Li
- Shandong Provincial Key Laboratory of Biochemical Engineering, College of Marine Science and Biological Engineering, Qingdao University of Science and Technology, Qingdao 266042, China
| | - Zhao Lv
- Hunan Engineering Technology Research Center of Featured Aquatic Resources Utilization, Hunan Agricultural University, Changsha 410128, China
| | - Zhenqiang Zhang
- Shandong Provincial Key Laboratory of Biochemical Engineering, College of Marine Science and Biological Engineering, Qingdao University of Science and Technology, Qingdao 266042, China
| | - Limei Qiu
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, CAS Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China; Laboratory for Marine Biology and Biotechnology, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao 266237, China.
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Miao L, Dai X, Song H, Backes AR, Song H. A new index for quantifying the ornamentational complexity of animals with shells. Ecol Evol 2022; 12:e9247. [PMID: 36035271 PMCID: PMC9412138 DOI: 10.1002/ece3.9247] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 07/03/2022] [Accepted: 07/29/2022] [Indexed: 11/11/2022] Open
Abstract
Morphological complexity reflects the biological structure of an organism and is closely linked to its associated functions and phylogenetics. In animals with shells, ornamentation is an important characteristic of morphological complexity, and it has various functions. However, because of the variations in type, shape, density, and strength of ornamentation, a universal quantitative measure of morphological complexity for shelled animals is lacking. We propose an ornamentation index (OI) derived from 3D scanning technology and a virtual model for quantifying ornamentation complexity. This index is designed to measure the extent of folding associated with ornamentation, regardless of shape and size. Ornamentation indices were measured for 15 ammonite specimens from the Permian to Cretaceous, 2 modern bivalves, 2 gastropods from the Pliocene to the present, and a modern echinoid. Compared with other measurements, such as the fractal dimension, rugosity, and surface-volume ratio, the OI displayed superiority in quantifying ornamentational complexity. The present study demonstrates that the OI is suitable for accurately characterizing and quantifying ornamentation complexity, regardless of shape and size. Therefore, the OI is potentially useful for comparing the ornamentational complexity of various organisms and can be exploited to provide further insight into the evolution of conchs. Ultimately, the OI can enhance our understanding of morphological evolution of shelled organisms, for example, whether shell ornaments simplify under ocean acidification or extinction, and how predation pressure is reflected in ornamentation complexity.
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Affiliation(s)
- Luyi Miao
- State Key Laboratory of Biogeology & Environmental Geology, School of Earth SciencesChina University of GeosciencesWuhanChina
| | - Xu Dai
- State Key Laboratory of Biogeology & Environmental Geology, School of Earth SciencesChina University of GeosciencesWuhanChina
| | - Hanchen Song
- State Key Laboratory of Biogeology & Environmental Geology, School of Earth SciencesChina University of GeosciencesWuhanChina
| | | | - Haijun Song
- State Key Laboratory of Biogeology & Environmental Geology, School of Earth SciencesChina University of GeosciencesWuhanChina
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Jamson KM, Moon BC, Fraass AJ. Diversity dynamics of microfossils from the Cretaceous to the Neogene show mixed responses to events. PALAEONTOLOGY 2022; 65:e12615. [PMID: 36248238 PMCID: PMC9540813 DOI: 10.1111/pala.12615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/10/2021] [Revised: 10/29/2021] [Accepted: 03/14/2022] [Indexed: 06/16/2023]
Abstract
Microfossils have a ubiquitous and well-studied fossil record with temporally and spatially fluctuating diversity, but how this arises and how major events affect speciation and extinction is uncertain. We present one of the first applications of PyRate to a micropalaeontological global occurrence dataset, reconstructing diversification rates within a Bayesian framework from the Mesozoic to the Neogene in four microfossil groups: planktic foraminiferans, calcareous nannofossils, radiolarians and diatoms. Calcareous and siliceous groups demonstrate opposed but inconsistent responses in diversification. Radiolarian origination increases from c. 104 Ma, maintaining high rates into the Cenozoic. Calcareous microfossil diversification rates significantly declines across the Cretaceous-Palaeogene boundary, while rates in siliceous microfossil groups remain stable until the Paleocene-Eocene transition. Diversification rates in the Cenozoic are largely stable in calcareous groups, whereas the Palaeogene is a turbulent time for diatoms. Diversification fluctuations are driven by climate change and fluctuations in sea surface temperatures, leading to different responses in the groups generating calcareous or siliceous microfossils. Extinctions are apparently induced by changes in anoxia, acidification and stratification; speciation tends to be associated with upwelling, productivity and ocean circulation. These results invite further micropalaeontological quantitative analysis and study of the effects of major transitions in the fossil record. Despite extensive occurrence data, regional diversification events were not recovered; neither were some global events. These unexpected results show the need to consider multiple spatiotemporal levels of diversity and diversification analyses and imply that occurrence datasets of different clades may be more appropriate for testing some hypotheses than others.
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Affiliation(s)
- Katie M. Jamson
- Palaeobiology Research GroupSchool of Earth SciencesUniversity of BristolWills Memorial Building, Queens RoadBristolBS8 1RJUK
- Present address:
School of Earth & Ocean SciencesUniversity of VictoriaBob Wright Centre A405VictoriaBCV8W 2Y2Canada
| | - Benjamin C. Moon
- Palaeobiology Research GroupSchool of Earth SciencesUniversity of BristolWills Memorial Building, Queens RoadBristolBS8 1RJUK
| | - Andrew J. Fraass
- Palaeobiology Research GroupSchool of Earth SciencesUniversity of BristolWills Memorial Building, Queens RoadBristolBS8 1RJUK
- The Academy of Natural Sciences of Drexel University1900 Benjamin Franklin ParkwayPhiladelphiaPA19103USA
- Present address:
School of Earth & Ocean SciencesUniversity of VictoriaBob Wright Centre A405VictoriaBCV8W 2Y2Canada
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40
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The Effect of Ocean Acidification on Skeletal Structures. JOURNAL OF MARINE SCIENCE AND ENGINEERING 2022. [DOI: 10.3390/jmse10060786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Abstract
It is well known that the increasing partial pressure of atmospheric CO2 (pCO2) is reducing surface ocean pH, a process known as ocean acidification (OA) [...]
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Slater SM, Bown P, Twitchett RJ, Danise S, Vajda V. Global record of "ghost" nannofossils reveals plankton resilience to high CO 2 and warming. Science 2022; 376:853-856. [PMID: 35587965 DOI: 10.1126/science.abm7330] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Predictions of how marine calcifying organisms will respond to climate change rely heavily on the fossil record of nannoplankton. Declines in calcium carbonate (CaCO3) and nannofossil abundance through several past global warming events have been interpreted as biocalcification crises caused by ocean acidification and related factors. We present a global record of imprint-or "ghost"-nannofossils that contradicts this view, revealing exquisitely preserved nannoplankton throughout an inferred Jurassic biocalcification crisis. Imprints from two further Cretaceous warming events confirm that the fossil records of these intervals have been strongly distorted by CaCO3 dissolution. Although the rapidity of present-day climate change exceeds the temporal resolution of most fossil records, complicating direct comparison with past warming events, our findings demonstrate that nannoplankton were more resilient to past events than traditional fossil evidence suggests.
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Affiliation(s)
- Sam M Slater
- Department of Palaeobiology, Swedish Museum of Natural History, SE-104 05 Stockholm, Sweden
| | - Paul Bown
- Department of Earth Sciences, University College London, London WC1E 6BT, UK
| | - Richard J Twitchett
- Department of Earth Sciences, The Natural History Museum, London SW7 5BD, UK
| | - Silvia Danise
- Dipartimento di Scienze della Terra, Università degli Studi di Firenze, Via La Pira 4, 50121 Firenze, Italy
| | - Vivi Vajda
- Department of Palaeobiology, Swedish Museum of Natural History, SE-104 05 Stockholm, Sweden
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Reduced H + channel activity disrupts pH homeostasis and calcification in coccolithophores at low ocean pH. Proc Natl Acad Sci U S A 2022; 119:e2118009119. [PMID: 35522711 PMCID: PMC9171652 DOI: 10.1073/pnas.2118009119] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Coccolithophore calcification is a major ocean biogeochemical process. While this process is likely to be sensitive to acidification-driven changes in ocean carbonate chemistry, incomplete understanding of the underlying mechanisms and constraints is a major bottleneck in predicting ocean acidification effects on calcification. We report severe disruption of pH homeostasis linked to a loss of H+ channel function in the coccolithophore Coccolithus braarudii acclimated to seawater pH values that are likely to be encountered currently in localized regions and more widely in future oceans. This disruption leads to specific defects in coccolith morphology. These findings provide mechanistic insight into how calcification in different coccolithophores is affected by changes in seawater carbonate chemistry. Coccolithophores are major producers of ocean biogenic calcite, but this process is predicted to be negatively affected by future ocean acidification scenarios. Since coccolithophores calcify intracellularly, the mechanisms through which changes in seawater carbonate chemistry affect calcification remain unclear. Here we show that voltage-gated H+ channels in the plasma membrane of Coccolithus braarudii serve to regulate pH and maintain calcification under normal conditions but have greatly reduced activity in cells acclimated to low pH. This disrupts intracellular pH homeostasis and impairs the ability of C. braarudii to remove H+ generated by the calcification process, leading to specific coccolith malformations. These coccolith malformations can be reproduced by pharmacological inhibition of H+ channels. Heavily calcified coccolithophore species such as C. braarudii, which make the major contribution to carbonate export to the deep ocean, have a large intracellular H+ load and are likely to be most vulnerable to future decreases in ocean pH.
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Portilho-Ramos RDC, Titschack J, Wienberg C, Siccha Rojas MG, Yokoyama Y, Hebbeln D. Major environmental drivers determining life and death of cold-water corals through time. PLoS Biol 2022; 20:e3001628. [PMID: 35587463 PMCID: PMC9119455 DOI: 10.1371/journal.pbio.3001628] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Accepted: 04/12/2022] [Indexed: 11/24/2022] Open
Abstract
Cold-water corals (CWCs) are the engineers of complex ecosystems forming unique biodiversity hotspots in the deep sea. They are expected to suffer dramatically from future environmental changes in the oceans such as ocean warming, food depletion, deoxygenation, and acidification. However, over the last decades of intense deep-sea research, no extinction event of a CWC ecosystem is documented, leaving quite some uncertainty on their sensitivity to these environmental parameters. Paleoceanographic reconstructions offer the opportunity to align the on- and offsets of CWC proliferation to environmental parameters. Here, we present the synthesis of 6 case studies from the North Atlantic Ocean and the Mediterranean Sea, revealing that food supply controlled by export production and turbulent hydrodynamics at the seabed exerted the strongest impact on coral vitality during the past 20,000 years, whereas locally low oxygen concentrations in the bottom water can act as an additional relevant stressor. The fate of CWCs in a changing ocean will largely depend on how these oceanographic processes will be modulated. Future ocean deoxygenation may be compensated regionally where the food delivery and food quality are optimal.
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Affiliation(s)
| | - Jürgen Titschack
- MARUM–Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany
- Senckenberg am Meer, Marine Research Department, Wilhelmshaven, Germany
| | - Claudia Wienberg
- MARUM–Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany
| | | | - Yusuke Yokoyama
- Analytical Center for Environmental Science–Atmosphere and Ocean Research Institute, University of Tokyo, Tokyo, Japan
| | - Dierk Hebbeln
- MARUM–Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany
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The nano- and meso-scale structure of amorphous calcium carbonate. Sci Rep 2022; 12:6870. [PMID: 35477728 PMCID: PMC9046151 DOI: 10.1038/s41598-022-10627-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2021] [Accepted: 03/23/2022] [Indexed: 11/30/2022] Open
Abstract
Understanding the underlying processes of biomineralization is crucial to a range of disciplines allowing us to quantify the effects of climate change on marine organisms, decipher the details of paleoclimate records and advance the development of biomimetic materials. Many biological minerals form via intermediate amorphous phases, which are hard to characterize due to their transient nature and a lack of long-range order. Here, using Monte Carlo simulations constrained by X-ray and neutron scattering data together with model building, we demonstrate a method for determining the structure of these intermediates with a study of amorphous calcium carbonate (ACC) which is a precursor in the bio-formation of crystalline calcium carbonates. We find that ACC consists of highly ordered anhydrous nano-domains of approx. 2 nm that can be described as nanocrystalline. These nano-domains are held together by an interstitial net-like matrix of water molecules which generate, on the mesoscale, a heterogeneous and gel-like structure of ACC. We probed the structural stability and dynamics of our model on the nanosecond timescale by molecular dynamics simulations. These simulations revealed a gel-like and glassy nature of ACC due to the water molecules and carbonate ions in the interstitial matrix featuring pronounced orientational and translational flexibility. This allows for viscous mobility with diffusion constants four to five orders of magnitude lower than those observed in solutions. Small and ultra-small angle neutron scattering indicates a hierarchically-ordered organization of ACC across length scales that allow us, based on our nano-domain model, to build a comprehensive picture of ACC formation by cluster assembly from solution. This contribution provides a new atomic-scale understanding of ACC and provides a framework for the general exploration of biomineralization and biomimetic processes.
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Knowledge Gaps and Missing Links in Understanding Mass Extinctions: Can Mathematical Modeling Help? Phys Life Rev 2022; 41:22-57. [DOI: 10.1016/j.plrev.2022.04.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Accepted: 04/11/2022] [Indexed: 11/20/2022]
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Gilbert PUPA, Bergmann KD, Boekelheide N, Tambutté S, Mass T, Marin F, Adkins JF, Erez J, Gilbert B, Knutson V, Cantine M, Hernández JO, Knoll AH. Biomineralization: Integrating mechanism and evolutionary history. SCIENCE ADVANCES 2022; 8:eabl9653. [PMID: 35263127 PMCID: PMC8906573 DOI: 10.1126/sciadv.abl9653] [Citation(s) in RCA: 62] [Impact Index Per Article: 31.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Calcium carbonate (CaCO3) biomineralizing organisms have played major roles in the history of life and the global carbon cycle during the past 541 Ma. Both marine diversification and mass extinctions reflect physiological responses to environmental changes through time. An integrated understanding of carbonate biomineralization is necessary to illuminate this evolutionary record and to understand how modern organisms will respond to 21st century global change. Biomineralization evolved independently but convergently across phyla, suggesting a unity of mechanism that transcends biological differences. In this review, we combine CaCO3 skeleton formation mechanisms with constraints from evolutionary history, omics, and a meta-analysis of isotopic data to develop a plausible model for CaCO3 biomineralization applicable to all phyla. The model provides a framework for understanding the environmental sensitivity of marine calcifiers, past mass extinctions, and resilience in 21st century acidifying oceans. Thus, it frames questions about the past, present, and future of CaCO3 biomineralizing organisms.
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Affiliation(s)
- Pupa U. P. A. Gilbert
- Departments of Physics, Chemistry, Geoscience, and Materials Science, University of Wisconsin-Madison, Madison, WI 53706, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Corresponding author. (P.U.P.A.G.); (A.H.K.)
| | - Kristin D. Bergmann
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Nicholas Boekelheide
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Sylvie Tambutté
- Centre Scientifique de Monaco, Department of Marine Biology, 98000 Monaco, Principality of Monaco
| | - Tali Mass
- University of Haifa, Marine Biology Department, Mt. Carmel, Haifa 31905, Israel
| | - Frédéric Marin
- Université de Bourgogne–Franche-Comté (UBFC), Laboratoire Biogéosciences, UMR CNRS 6282, Bâtiment des Sciences Gabriel, 21000 Dijon, France
| | - Jess F. Adkins
- Geological and Planetary Sciences, California Institute of Technology, MS 100-23, Pasadena, CA 91125, USA
| | - Jonathan Erez
- The Hebrew University of Jerusalem, Institute of Earth Sciences, Jerusalem 91904, Israel
| | - Benjamin Gilbert
- Energy Geoscience Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Department of Earth and Planetary Science, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Vanessa Knutson
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
| | - Marjorie Cantine
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
- Goethe-Universität Frankfurt, 60438 Frankfurt am Main, Germany
| | - Javier Ortega Hernández
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
| | - Andrew H. Knoll
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
- Corresponding author. (P.U.P.A.G.); (A.H.K.)
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47
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The spontaneous electrochemical reduction of gaseous CO2 using a sacrificial Zn anode and a high-surface-area dendritic Ag-Cu cathode. Sep Purif Technol 2022. [DOI: 10.1016/j.seppur.2021.120350] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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48
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Foster WJ, Hirtz JA, Farrell C, Reistroffer M, Twitchett RJ, Martindale RC. Bioindicators of severe ocean acidification are absent from the end-Permian mass extinction. Sci Rep 2022; 12:1202. [PMID: 35075151 PMCID: PMC8786885 DOI: 10.1038/s41598-022-04991-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Accepted: 01/04/2022] [Indexed: 11/09/2022] Open
Abstract
The role of ocean acidification in the end-Permian mass extinction is highly controversial with conflicting hypotheses relating to its timing and extent. Observations and experiments on living molluscs demonstrate that those inhabiting acidic settings exhibit characteristic morphological deformities and disordered shell ultrastructures. These deformities should be recognisable in the fossil record, and provide a robust palaeo-proxy for severe ocean acidification. Here, we use fossils of originally aragonitic invertebrates to test whether ocean acidification occurred during the Permian–Triassic transition. Our results show that we can reject a hypothesised worldwide basal Triassic ocean acidification event owing to the absence of deformities and repair marks on bivalves and gastropods from the Triassic Hindeodus parvus Conodont Zone. We could not, however, utilise this proxy to test the role of a hypothesised acidification event just prior to and/or during the mass extinction event. If ocean acidification did develop during the mass extinction event, then it most likely only occurred in the latest Permian, and was not severe enough to impact calcification.
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Affiliation(s)
- William J Foster
- Institut für Geologie, Centrum für Erdsystemforschung und Nachhaltigkeit, Universität Hamburg, Hamburg, Germany.
| | - J A Hirtz
- University of Texas at Austin, Jackson School of Geosciences, Austin, TX, USA
| | - C Farrell
- School of Earth Sciences, University College Dublin, Dublin, Ireland
| | - M Reistroffer
- University of Texas at Austin, Jackson School of Geosciences, Austin, TX, USA
| | - R J Twitchett
- Department of Earth Sciences, Natural History Museum, London, SW7 5BD, UK
| | - R C Martindale
- University of Texas at Austin, Jackson School of Geosciences, Austin, TX, USA
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New constraints on the postglacial shallow-water carbonate accumulation in the Great Barrier Reef. Sci Rep 2022; 12:924. [PMID: 35042895 PMCID: PMC8766595 DOI: 10.1038/s41598-021-04586-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Accepted: 12/22/2021] [Indexed: 11/18/2022] Open
Abstract
More accurate global volumetric estimations of shallow-water reef deposits are needed to better inform climate and carbon cycle models. Using recently acquired datasets and International Ocean Discovery Program (IODP) Expedition 325 cores, we calculated shallow-water CaCO3 volumetrics and mass for the Great Barrier Reef region and extrapolated these results globally. In our estimates, we include deposits that have been neglected in global carbonate budgets: Holocene Halimeda bioherms located on the shelf, and postglacial pre-Holocene (now) drowned coral reefs located on the shelf edge. Our results show that in the Great Barrier Reef alone, these drowned reef deposits represent ca. 135 Gt CaCO3, comparatively representing 16–20% of the younger Holocene reef deposits. Globally, under plausible assumptions, we estimate the presence of ca. 8100 Gt CaCO3 of Holocene reef deposits, ca. 1500 Gt CaCO3 of drowned reef deposits and ca. 590 Gt CaCO3 of Halimeda shelf bioherms. Significantly, we found that in our scenarios the periods of pronounced reefal mass accumulation broadly encompass the occurrence of the Younger Dryas and periods of CO2 surge (14.9–14.4 ka, 13.0–11.5 ka) observed in Antarctic ice cores. Our estimations are consistent with reef accretion episodes inferred from previous global carbon cycle models and with the chronology from reef cores from the shelf edge of the Great Barrier Reef.
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Dong S, Lei Y, Bi H, Xu K, Li T, Jian Z. Biological Response of Planktic Foraminifera to Decline in Seawater pH. BIOLOGY 2022; 11:biology11010098. [PMID: 35053097 PMCID: PMC8773009 DOI: 10.3390/biology11010098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Revised: 12/30/2021] [Accepted: 01/05/2022] [Indexed: 11/16/2022]
Abstract
Understanding the way in which a decline in ocean pH can affect calcareous organisms could enhance our ability to predict the impacts of the potential decline in seawater pH on marine ecosystems, and could help to reconstruct the paleoceanographic events over a geological time scale. Planktic foraminifera are among the most important biological proxies for these studies; however, the existing research on planktic foraminifera is almost exclusively based on their geochemical indices, without the inclusion of information on their biological development. Through a series of on-board experiments in the western tropical Pacific (134°33′54″ E, 12°32′47″ N), the present study showed that the symbiont-bearing calcifier Trilobatus sacculifer—a planktic foraminifer—responded rapidly to a decline in seawater pH, including losing symbionts, bleaching, etc. Several indices were established to quantify the relationships between these biological parameters and seawater pH, which could be used to reconstruct the paleoceanographic seawater pH. We further postulated that the loss of symbionts in planktic foraminifera acts as an adaptive response to the stress of low pH. Our results indicate that an ongoing decline in seawater pH may hinder the growth and calcification of planktic foraminifera by altering their biological processes. A reduction in carbonate deposition and predation could have profound effects on the carbon cycle and energy flow in the marine food web.
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Affiliation(s)
- Shuaishuai Dong
- Laboratory of Marine Organism Taxonomy and Phylogeny, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; (S.D.); (K.X.)
| | - Yanli Lei
- Laboratory of Marine Organism Taxonomy and Phylogeny, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; (S.D.); (K.X.)
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519082, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- Correspondence: (Y.L.); (T.L.); (Z.J.)
| | - Hongsheng Bi
- Chesapeake Biological Laboratory, University of Maryland Center for Environmental Science, Solomon, MD 20688, USA;
| | - Kuidong Xu
- Laboratory of Marine Organism Taxonomy and Phylogeny, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; (S.D.); (K.X.)
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519082, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Tiegang Li
- Key Laboratory of Marine Sedimentology and Environmental Geology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao 266061, China
- Correspondence: (Y.L.); (T.L.); (Z.J.)
| | - Zhimin Jian
- State Key Laboratory of Marine Geology, Tongji University, Shanghai 200092, China
- Correspondence: (Y.L.); (T.L.); (Z.J.)
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