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Gupta R, Paul K. A fluorescent "Turn-ON" probe with rapid and differential response to HSA and BSA: quantitative detection of HSA in urine. J Mater Chem B 2024; 12:9037-9049. [PMID: 39158475 DOI: 10.1039/d4tb00749b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/20/2024]
Abstract
The present study provides insight into the differential response of a benzimidazole-malononitrile fluorescent "Turn-ON" probe on interaction with two structurally similar proteins, BSA and HSA. Compound 6 shows more sensitivity towards the two SAs, which is completely lost in the case of compound 7, synthesized by substitution on 6. The aggregates of compound 6 show absorption maxima at 385 nm and weak emission maxima at 565 nm. Compound 6 forms a new emission band at 475 nm on gradual addition of BSA (200 μM) along with a slight increase in the emission band at 565 nm. However, on addition of HSA (50 μM), a new band at 475 nm is formed. In contrast to BSA, in the case of HSA, 50% quenching is observed in the emission band of compound 6 at 565 nm. The new band formed on the interaction of 6 with BSA shows four-fold more enhancement compared to HSA. Furthermore, the mechanism of interaction of 6 with serum albumin has been investigated through lifetime-fluorescence analysis, site-selective drug experiments, dynamic light scattering, FE-SEM, FT-IR, etc. Molecular docking studies and site marker drug displacement experiments reveal differential interactions of 6 towards the two structurally similar proteins. Aggregates of 6 with an average hydrodynamic size of 100-190 nm are disassembled on adding BSA and HSA, and the size of the serum albumin and 6 complex decreases to 10-20 nm, revealing the ligand's encapsulation in the serum albumin cavity. Practical applicability for the quantitative detection of HSA in human urine samples is also demonstrated. The high binding affinity, sensitivity, selectivity and differential response of probe 6 towards two serum albumins (HSA and BSA) and significant quantification of HSA in urine samples shows the potential ability of this probe in medical applications.
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Affiliation(s)
- Rohini Gupta
- Department of Chemistry and Biochemistry, Thapar Institute of Engineering and Technology, Patiala-147001, India.
| | - Kamaldeep Paul
- Department of Chemistry and Biochemistry, Thapar Institute of Engineering and Technology, Patiala-147001, India.
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2
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Deryusheva EI, Shevelyova MP, Rastrygina VA, Nemashkalova EL, Vologzhannikova AA, Machulin AV, Nazipova AA, Permyakova ME, Permyakov SE, Litus EA. In Search for Low-Molecular-Weight Ligands of Human Serum Albumin That Affect Its Affinity for Monomeric Amyloid β Peptide. Int J Mol Sci 2024; 25:4975. [PMID: 38732194 PMCID: PMC11084196 DOI: 10.3390/ijms25094975] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2024] [Revised: 04/23/2024] [Accepted: 04/30/2024] [Indexed: 05/13/2024] Open
Abstract
An imbalance between production and excretion of amyloid β peptide (Aβ) in the brain tissues of Alzheimer's disease (AD) patients leads to Aβ accumulation and the formation of noxious Aβ oligomers/plaques. A promising approach to AD prevention is the reduction of free Aβ levels by directed enhancement of Aβ binding to its natural depot, human serum albumin (HSA). We previously demonstrated the ability of specific low-molecular-weight ligands (LMWLs) in HSA to improve its affinity for Aβ. Here we develop this approach through a bioinformatic search for the clinically approved AD-related LMWLs in HSA, followed by classification of the candidates according to the predicted location of their binding sites on the HSA surface, ranking of the candidates, and selective experimental validation of their impact on HSA affinity for Aβ. The top 100 candidate LMWLs were classified into five clusters. The specific representatives of the different clusters exhibit dramatically different behavior, with 3- to 13-fold changes in equilibrium dissociation constants for the HSA-Aβ40 interaction: prednisone favors HSA-Aβ interaction, mefenamic acid shows the opposite effect, and levothyroxine exhibits bidirectional effects. Overall, the LMWLs in HSA chosen here provide a basis for drug repurposing for AD prevention, and for the search of medications promoting AD progression.
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Affiliation(s)
- Evgenia I. Deryusheva
- Institute for Biological Instrumentation, Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences, Institutskaya Str., 7, Pushchino 142290, Moscow Region, Russia; (M.P.S.); (V.A.R.); (E.L.N.); (A.A.V.); (A.A.N.); (M.E.P.); (S.E.P.); (E.A.L.)
| | - Marina P. Shevelyova
- Institute for Biological Instrumentation, Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences, Institutskaya Str., 7, Pushchino 142290, Moscow Region, Russia; (M.P.S.); (V.A.R.); (E.L.N.); (A.A.V.); (A.A.N.); (M.E.P.); (S.E.P.); (E.A.L.)
| | - Victoria A. Rastrygina
- Institute for Biological Instrumentation, Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences, Institutskaya Str., 7, Pushchino 142290, Moscow Region, Russia; (M.P.S.); (V.A.R.); (E.L.N.); (A.A.V.); (A.A.N.); (M.E.P.); (S.E.P.); (E.A.L.)
| | - Ekaterina L. Nemashkalova
- Institute for Biological Instrumentation, Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences, Institutskaya Str., 7, Pushchino 142290, Moscow Region, Russia; (M.P.S.); (V.A.R.); (E.L.N.); (A.A.V.); (A.A.N.); (M.E.P.); (S.E.P.); (E.A.L.)
| | - Alisa A. Vologzhannikova
- Institute for Biological Instrumentation, Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences, Institutskaya Str., 7, Pushchino 142290, Moscow Region, Russia; (M.P.S.); (V.A.R.); (E.L.N.); (A.A.V.); (A.A.N.); (M.E.P.); (S.E.P.); (E.A.L.)
| | - Andrey V. Machulin
- Skryabin Institute of Biochemistry and Physiology of Microorganisms, Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences, Pr. Nauki, 5, Pushchino 142290, Moscow Region, Russia;
| | - Alija A. Nazipova
- Institute for Biological Instrumentation, Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences, Institutskaya Str., 7, Pushchino 142290, Moscow Region, Russia; (M.P.S.); (V.A.R.); (E.L.N.); (A.A.V.); (A.A.N.); (M.E.P.); (S.E.P.); (E.A.L.)
| | - Maria E. Permyakova
- Institute for Biological Instrumentation, Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences, Institutskaya Str., 7, Pushchino 142290, Moscow Region, Russia; (M.P.S.); (V.A.R.); (E.L.N.); (A.A.V.); (A.A.N.); (M.E.P.); (S.E.P.); (E.A.L.)
| | - Sergei E. Permyakov
- Institute for Biological Instrumentation, Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences, Institutskaya Str., 7, Pushchino 142290, Moscow Region, Russia; (M.P.S.); (V.A.R.); (E.L.N.); (A.A.V.); (A.A.N.); (M.E.P.); (S.E.P.); (E.A.L.)
| | - Ekaterina A. Litus
- Institute for Biological Instrumentation, Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences, Institutskaya Str., 7, Pushchino 142290, Moscow Region, Russia; (M.P.S.); (V.A.R.); (E.L.N.); (A.A.V.); (A.A.N.); (M.E.P.); (S.E.P.); (E.A.L.)
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Rozhkov S, Goryunov A, Rozhkova N. Molecular Serum Albumin Unmask Nanobio Properties of Molecular Graphenes in Shungite Carbon Nanoparticles. Int J Mol Sci 2024; 25:2465. [PMID: 38473711 DOI: 10.3390/ijms25052465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2024] [Revised: 02/11/2024] [Accepted: 02/17/2024] [Indexed: 03/14/2024] Open
Abstract
Serum albumin is a popular macromolecule for studying the effect of proteins on the colloidal stability of nanoparticle (NP) dispersions, as well as the protein-nanoparticle interaction and protein corona formation. In this work, we analyze the specific conformation-dependent phase, redox, and fatty acid delivery properties of bovine albumin in the presence of shungite carbon (ShC) molecular graphenes stabilized in aqueous dispersions in the form of NPs in order to reveal the features of NP bioactivity. The formation of NP complexes with proteins (protein corona around NP) affects the transport properties of albumin for the delivery of fatty acids. Being acceptors of electrons and ligands, ShC NPs are capable of exhibiting both their own biological activity and significantly affecting conformational and phase transformations in protein systems.
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Affiliation(s)
- Sergey Rozhkov
- Institute of Biology, Karelian Research Centre RAS, 185910 Petrozavodsk, Russia
| | - Andrey Goryunov
- Institute of Biology, Karelian Research Centre RAS, 185910 Petrozavodsk, Russia
| | - Natalia Rozhkova
- Institute of Geology, Karelian Research Centre RAS, 185910 Petrozavodsk, Russia
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Wang Y, Huo F, Yin C. Development of Human Serum Albumin Fluorescent Probes in Detection, Imaging, and Disease Therapy. J Phys Chem B 2024; 128:1121-1138. [PMID: 38266243 DOI: 10.1021/acs.jpcb.3c06915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2024]
Abstract
Human serum albumin (HSA) acts as a repository and transporter of substances in the blood. An abnormal concentration may indicate the occurrence of liver- and kidney-related diseases, which has attracted people to investigate the precise quantification of HSA in body fluids. Fluorescent probes can combine with HSA covalently or noncovalently to quantify HSA in urine and plasma. Moreover, probes combined with HSA can improve its photophysical properties; probe-HSA has been applied in real-time monitoring and photothermal and photodynamic therapy in vivo. This Review will introduce fluorescent probes for quantitative HSA according to the three reaction mechanisms of spatial structure, enzymatic reaction, and self-assembly and systematically introduce the application of probes combined with HSA in disease imaging and phototherapy. It will help develop multifunctional applications for HSA probes and provide assistance in the early diagnosis and treatment of diseases.
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Affiliation(s)
- Yuting Wang
- Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Key Laboratory of Materials for Energy Conversion and Storage of Shanxi Province, Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
| | - Fangjun Huo
- Research Institute of Applied Chemistry, Shanxi University, Taiyuan 030006, China
| | - Caixia Yin
- Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Key Laboratory of Materials for Energy Conversion and Storage of Shanxi Province, Institute of Molecular Science, Shanxi University, Taiyuan 030006, China
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Ploch-Jankowska A. Spectroscopic Analysis of the Effect of Ibuprofen Degradation Products on the Interaction between Ibuprofen and Human Serum Albumin. Curr Protein Pept Sci 2024; 25:492-506. [PMID: 38351694 DOI: 10.2174/0113892037284277240126094716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2023] [Revised: 01/17/2024] [Accepted: 01/18/2024] [Indexed: 06/28/2024]
Abstract
BACKGROUND Non-Steroidal Anti-Inflammatory Drugs (NSAIDs) are one of the most commonly used groups of medicinal compounds in the world. The wide access to NSAIDs and the various ways of storing them due to their easy accessibility often entail the problem with the stability and durability resulting from the exposure of drugs to external factors. The aim of the research was to evaluate in vitro the mechanism of competition between ibuprofen (IBU) and its degradation products, i.e., 4'-isobutylacetophenone (IBAP) and (2RS)-2-(4- formylphenyl)propionic acid (FPPA) during transport in a complex with fatted (HSA) and defatted (dHSA) human serum albumin. METHODS The research was carried out using spectroscopic techniques, such as spectrophotometry, infrared spectroscopy and nuclear magnetic resonance spectroscopy. RESULTS The comprehensive application of spectroscopic techniques allowed, among others, for the determination of the binding constant, the number of classes of binding sites and the cooperativeness constant of the analyzed systems IBU-(d)HSA, IBU-(d)HSA-FPPA, IBU-(d)HSA-IBAP; the determination of the effect of ibuprofen and its degradation products on the secondary structure of albumin; identification and assessment of interactions between ligand and albumin; assessment of the impact of the presence of fatty acids in the structure of albumin and the measurement temperature on the binding of IBU, IBAP and FPPA to (d)HSA. CONCLUSION The conducted research allowed us to conclude that the presence of ibuprofen degradation products and the increase in their concentration significantly affect the formation of the IBU-albumin complex and thus, the value of the association constant of the drug, changing the concentration of its free fraction in the blood plasma. It was also found that the presence of an ibuprofen degradation product in a complex with albumin affects its secondary structure.
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Affiliation(s)
- Anna Ploch-Jankowska
- Department of Pharmacy and Ecological Chemistry, Institute of Chemistry, University of Opole, Oleska 48, 45-052 Opole, Poland
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6
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Rogóż W, Mac K, Owczarzy A, Kulig K, Pożycka J, Maciążek-Jurczyk M. The effect of selected aminoglycoside antibiotics on human serum albumin antioxidant activity: a spectroscopic and calorimetric comparative study. Pharmacol Rep 2023; 75:1276-1290. [PMID: 37704832 PMCID: PMC10539444 DOI: 10.1007/s43440-023-00529-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2023] [Revised: 08/29/2023] [Accepted: 08/30/2023] [Indexed: 09/15/2023]
Abstract
BACKGROUND Human serum albumin (HSA) is a valuable component of non-enzymatic and endogenous antioxidant mechanisms. The antioxidant activity of HSA can be modulated by ligands, including drugs. Although this is a central topic in the field of oxidation, there is still a lack of information about the protection against the effects of elevated free radical levels. METHODS The aim of this study was to investigate the antioxidant activity of kanamycin (KAN) and neomycin (NEO) and their effect on the antioxidant potential of HSA using spectroscopic and microcalorimetric techniques. RESULTS Despite the fact that kanamycin and neomycin interact with HSA, no changes in the secondary structure of the protein have been observed. The analysis of the aminoglycoside antibiotics showed their low antioxidant activity and a synergistic effect of the interaction, probably due to the influence of ligands (KAN, NEO) on the availability of HSA amino acid residues functional groups, such as the free thiol group (Cys-34). CONCLUSIONS Based on the spectroscopic and microcalorimetric data, both KAN and NEO can be considered modulators of the HSA antioxidant activity.
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Affiliation(s)
- Wojciech Rogóż
- Department of Physical Pharmacy, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia, 40-055 Katowice, Poland
| | - Kinga Mac
- Department of Physical Pharmacy, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia, 40-055 Katowice, Poland
| | - Aleksandra Owczarzy
- Department of Physical Pharmacy, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia, 40-055 Katowice, Poland
| | - Karolina Kulig
- Department of Physical Pharmacy, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia, 40-055 Katowice, Poland
| | - Jadwiga Pożycka
- Department of Physical Pharmacy, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia, 40-055 Katowice, Poland
| | - Małgorzata Maciążek-Jurczyk
- Department of Physical Pharmacy, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia, 40-055 Katowice, Poland
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7
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Spectroscopic studies on binding of ibuprofen and drotaverine with bovine serum albumin. J Photochem Photobiol A Chem 2023. [DOI: 10.1016/j.jphotochem.2022.114512] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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8
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Rogóż W, Pożycka J, Kulig K, Owczarzy A, Szkudlarek A, Maciążek-Jurczyk M. New look at the metabolism of nonsteroidal anti-inflammatory drugs: influence on human serum albumin antioxidant activity. J Biomol Struct Dyn 2023; 41:753-763. [PMID: 34871148 DOI: 10.1080/07391102.2021.2011784] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Body's homeostasis is dependent on many factors, such as maintaining balance between free radicals formation and degradation. Human serum albumin (HSA) also plays an important role in homeostasis. The aim of this study was thermodynamic analysis of the interaction between ketoprofen (KET), naproxen (NPX), diclofenac (DIC) and HSA, as well as the effect of drug-albumin binding on HSA antioxidant activity using calorimetric and spectrophotometric techniques. Based on the calorimetric analysis it has been shown that accompanied by hydrophobic interaction drugs-albumin binding is an exoenergetic reaction. All analyzed drugs and HSA showed the ability to react with free radicals such as a radical cation, formed as a result of the reaction between 2,2'-Azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt (ABTS) and potassium persulfate (K2S2O8). Using ABTS assay a synergistic effect of ketoprofen (KET) and naproxen (NPX) on HSA antioxidant activity was observed while the effect of diclofenac (DIC) binding with albumin was probably additive. Because some medications including KET, NPX and DIC belong to over the counter (OTC) non-steroidal anti-inflammatory drugs (NSAIDs), it is necessary to understand their influence on HSA antioxidant activity.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- W Rogóż
- Department of Physical Pharmacy, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia in Katowice, Katowice, Poland
| | - J Pożycka
- Department of Physical Pharmacy, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia in Katowice, Katowice, Poland
| | - K Kulig
- Department of Physical Pharmacy, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia in Katowice, Katowice, Poland
| | - A Owczarzy
- Department of Physical Pharmacy, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia in Katowice, Katowice, Poland
| | - A Szkudlarek
- Department of Physical Pharmacy, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia in Katowice, Katowice, Poland
| | - M Maciążek-Jurczyk
- Department of Physical Pharmacy, Faculty of Pharmaceutical Sciences in Sosnowiec, Medical University of Silesia in Katowice, Katowice, Poland
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Bhardwaj BK, Venkatesh T, Suresh PS. Study on the interaction of the bromodomain inhibitor JQ1 with human serum albumin by spectroscopic and molecular docking studies. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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10
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Ali MS, Rehman MT, Al-Lohedan HA, AlAjmi MF. Exploration of the binding between cuminol and bovine serum albumin through spectroscopic, molecular docking and molecular dynamics methods. J Biomol Struct Dyn 2022; 40:12404-12412. [PMID: 34488560 DOI: 10.1080/07391102.2021.1971560] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Cuminol (4-Isopropylbenzyl alcohol), found in the essential oils of several plant sources, is an important constituent of several cosmetics formulations. The interaction of cuminol with model plasma protein bovine serum albumin was studied in this paper. The experimental studies were mainly carried out using fluorescence spectrophotometry aided with UV visible and CD spectroscopies. Intrinsic fluorescence measurements showed that there was a weak binding between cuminol and BSA. The mechanism of binding involved static quenching with around 1:1 binding. The binding was chiefly supported by hydrophobic forces although a little contribution of hydrogen bonding was also found in the interaction and the values of enthalpy change were negative with positive entropy change. The secondary structure of BSA didn't change significantly in presence of low concentrations of cuminol, however, partial unfolding of the former taken place when the concentration of the latter increased. Molecular docking analyses showed cuminol binds at the intersection of subdomains IIA and IIIA, i.e. its binding site is in between Sudlow sites I and II. Molecular dynamics simulations results have shown that BSA forms a stable complex with cuminol and the structure of the former didn't change much in presence of later. Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Mohd Sajid Ali
- Surfactant Research Chair, Department of Chemistry, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Md Tabish Rehman
- Department of Pharmacognosy, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia
| | - Hamad A Al-Lohedan
- Surfactant Research Chair, Department of Chemistry, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Mohamed Fahad AlAjmi
- Department of Pharmacognosy, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia
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SARS-CoV-2 Spike Protein Binding of Glycated Serum Albumin-Its Potential Role in the Pathogenesis of the COVID-19 Clinical Syndromes and Bias towards Individuals with Pre-Diabetes/Type 2 Diabetes and Metabolic Diseases. Int J Mol Sci 2022; 23:ijms23084126. [PMID: 35456942 PMCID: PMC9030890 DOI: 10.3390/ijms23084126] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Revised: 04/04/2022] [Accepted: 04/06/2022] [Indexed: 01/08/2023] Open
Abstract
The immune response to SARS-CoV-2 infection requires antibody recognition of the spike protein. In a study designed to examine the molecular features of anti-spike and anti-nucleocapsid antibodies, patient plasma proteins binding to pre-fusion stabilised complete spike and nucleocapsid proteins were isolated and analysed by matrix-assisted laser desorption ionisation–time of flight (MALDI-ToF) mass spectrometry. Amongst the immunoglobulins, a high affinity for human serum albumin was evident in the anti-spike preparations. Careful mass comparison revealed the preferential capture of advanced glycation end product (AGE) forms of glycated human serum albumin by the pre-fusion spike protein. The ability of bacteria and viruses to surround themselves with serum proteins is a recognised immune evasion and pathogenic process. The preference of SARS-CoV-2 for AGE forms of glycated serum albumin may in part explain the severity and pathology of acute respiratory distress and the bias towards the elderly and those with (pre)diabetic and atherosclerotic/metabolic disease.
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Feizi-Dehnayebi M, Dehghanian E, Mansouri-Torshizi H. DNA/BSA binding affinity studies of new Pd(II) complex with S-S and N-N donor mixed ligands via experimental insight and molecular simulation: Preliminary antitumor activity, lipophilicity and DFT perspective. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.117853] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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13
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Parveen S, Jafri S, Yasir Khan H, Tabassum S, Arjmand F. Elucidating the interaction of enantiomeric Cu(II) complexes with DNA, RNA and HSA: A comparative study. Polyhedron 2021. [DOI: 10.1016/j.poly.2021.115501] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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14
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Bashir M, Yousuf I, Arjmand F, Tabassum S. Deciphering the effect of hydrophobicity on protein binding interaction in cobalt(II) complexes by multispectroscopic and computational methods. J Biomol Struct Dyn 2021; 40:7381-7393. [PMID: 33685362 DOI: 10.1080/07391102.2021.1897678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
In the present work, we report the synthesis, characterization of two cobalt complexes (1 and 2) and their HSA binding studies by multispectroscopic methods. Hirshfeld surfaces analysis and fingerprint plot analysis were carried out to identify intermolecular interactions viz., N-H···O, O-H···O and C-H···O linkages in crystal framework of the complexes. Density functional theory (DFT) studies were carried out to ascertain the electronic structure and molecular geometry of the complexes 1 and 2, and determine the localization of HOMO and LUMO in the complexes. A comparative in vitro interaction study of complex 1 and 2 with human serum albumin protein was carried out by employing UV-vis, fluorescence, circular dichroism, FTIR and molecular docking techniques. Interestingly, the HSA binding affinity of complex 2 was found to be more than complex 1 which was evidenced from the higher binding constant values owing to its strong hydrophobic topology. Further, a significant conformational change in microenvironment of HSA was noticed upon binding with complexes 1 and 2, nevertheless more perturbations were noticed in presence of complex 1. Molecular docking studies were carried out to validate the spectroscopic results and ascertain the preferential binding mode of complexes at the specific target site of HSA.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Masrat Bashir
- Department of Chemistry, Aligarh Muslim University, Aligarh, Uttar Pradesh, India
| | - Imtiyaz Yousuf
- Department of Chemistry, Aligarh Muslim University, Aligarh, Uttar Pradesh, India
| | - Farukh Arjmand
- Department of Chemistry, Aligarh Muslim University, Aligarh, Uttar Pradesh, India
| | - Sartaj Tabassum
- Department of Chemistry, Aligarh Muslim University, Aligarh, Uttar Pradesh, India
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15
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Liu X, Feng D, Zheng M, Cui Y, Zhong D. Characterization of covalent binding of tyrosine kinase inhibitors to plasma proteins. Drug Metab Pharmacokinet 2020; 35:456-465. [DOI: 10.1016/j.dmpk.2020.07.002] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2020] [Revised: 06/27/2020] [Accepted: 07/12/2020] [Indexed: 01/24/2023]
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16
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Rimac H, Tandarić T, Vianello R, Bojić M. Indomethacin Increases Quercetin Affinity for Human Serum Albumin: A Combined Experimental and Computational Study and Its Broader Implications. Int J Mol Sci 2020; 21:ijms21165740. [PMID: 32785199 PMCID: PMC7460863 DOI: 10.3390/ijms21165740] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Revised: 08/06/2020] [Accepted: 08/08/2020] [Indexed: 12/17/2022] Open
Abstract
Human serum albumin (HSA) is the most abundant carrier protein in the human body. Competition for the same binding site between different ligands can lead to an increased active concentration or a faster elimination of one or both ligands. Indomethacin and quercetin both bind to the binding site located in the IIA subdomain. To determine the nature of the HSA-indomethacin-quercetin interactions, spectrofluorometric, docking, molecular dynamics studies, and quantum chemical calculations were performed. The results show that the indomethacin and quercetin binding sites do not overlap. Moreover, the presence of quercetin does not influence the binding constant and position of indomethacin in the pocket. However, binding of quercetin is much more favorable in the presence of indomethacin, with its position and interactions with HSA significantly changed. These results provide a new insight into drug-drug interactions, which can be important in situations when displacement from HSA or other proteins is undesirable or even desirable. This principle could also be used to deliberately prolong or shorten the xenobiotics' half-life in the body, depending on the desired outcomes.
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Affiliation(s)
- Hrvoje Rimac
- Department of Medicinal Chemistry, University of Zagreb Faculty of Pharmacy and Biochemistry, 10000 Zagreb, Croatia;
- Laboratory of Computational Modelling of Drugs, South Ural State University, 454008 Chelyabinsk, Russia
- Correspondence:
| | - Tana Tandarić
- Division of Organic Chemistry and Biochemistry, Ruđer Bošković Institute, 10000 Zagreb, Croatia; (T.T.); (R.V.)
| | - Robert Vianello
- Division of Organic Chemistry and Biochemistry, Ruđer Bošković Institute, 10000 Zagreb, Croatia; (T.T.); (R.V.)
| | - Mirza Bojić
- Department of Medicinal Chemistry, University of Zagreb Faculty of Pharmacy and Biochemistry, 10000 Zagreb, Croatia;
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17
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Zhao H, Bojko B, Liu F, Pawliszyn J, Peng W, Wang X. Mechanism of interactions between organophosphorus insecticides and human serum albumin: Solid-phase microextraction, thermodynamics and computational approach. CHEMOSPHERE 2020; 253:126698. [PMID: 32302901 DOI: 10.1016/j.chemosphere.2020.126698] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2020] [Revised: 03/11/2020] [Accepted: 04/02/2020] [Indexed: 06/11/2023]
Abstract
Organophosphates insecticides (OPs) are one of the major environmental pollutants and their interaction with human serum albumin (HSA) has been shown to have significant effects on their bioavailability which is related to toxicokinetics and toxicodynamics in human body. In this research, solid-phase microextraction methods were developed to analyse the free concentrations of three OPs (chlorpyrifos, parathion-methyl and malathion) in buffered HSA solution and that provide a useful method for the determination of binding affinity constants (Ka), binding forces and binding location. Polydimethylsiloxane fibers were selected for analysing the free concentrations of OPs, with an external calibration approach. Good linearities conducted in PBS solution were observed in the range of 0.0025-1.7 μmol L-1 (R2 = 0.9975) for chlorpyrifos, 1.0-27 μmol L-1 (R2 = 0.9974) for parathion-methyl, and 0.5-70 μmol L-1 (R2 = 0.9973)for malathion, respectively. The LODs for instrument response were 1 ng, 5 ng and 10 ng for chlorpyrifos, parathion-methyl and malathion, respectively. The Ka values for chlorpyrifos, parathion-methyl and malathion showed that they were positively correlated with hydrophobicity and negatively correlated with temperature. The OP binding sites on HSA were confirmed by site marker competition test and further proven by computational approaches. The recognition region of parathion-methyl was situated within residues 199-292 in subdomain IIA. Malathion bonded to residues 404-558 in subdomain IIIA. The mode of action between HSA-parathion-methyl and HSA-malathion is found to involve mainly by H-bonds, π-π stacking and hydrophobic effects. These results clearly demonstrate the noncovalent binding of OPs with HSA and provide new insight into solid-phase microextraction, thermodynamics and computational approaches.
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Affiliation(s)
- Huiyu Zhao
- Institute of Quality and Standards for Agricultural Products, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.
| | - Barbara Bojko
- Department of Pharmacodynamics and Molecular Pharmacology, Nicolaus Copernicus University, Toruń, Poland
| | - Fengmao Liu
- Department of Chemistry, China Agricultural University, Beijing, China
| | - Janusz Pawliszyn
- Department of Chemistry, University of Waterloo, Waterloo, Canada.
| | - Wei Peng
- Department of Chemistry, China Agricultural University, Beijing, China; College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, China
| | - Xinquan Wang
- Institute of Quality and Standards for Agricultural Products, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
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18
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Li X, Sun X, Zhao R, Shao D, Bi S. Study on the binding of sulfaclozine sodium monohydrate with bovine and human serum albumins using multi-spectroscopy and molecular docking. J Biomol Struct Dyn 2020; 39:4835-4844. [PMID: 32579083 DOI: 10.1080/07391102.2020.1780945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Abstract
The interactions of sulfaclozine sodium monohydrate (SSM) with bovine and human serum albumins (BSA and HSA) were studied by multi-spectroscopy and molecular docking technique. Stern-Volmer analysis and fluorescence lifetime measurements suggested the quenching processes were static. According to the Fluorescence resonance energy transfer (FRET) theory, the binding distances were obtained indicating SSM interacted with BSA/HSA along with non-radiation energy conversion. Electrostatic attraction was the main force in keeping the stability of the compound based on thermodynamic parameters. Circular dichroism (CD), synchronous fluorescence and Fourier Transform infrared (FT-IR) spectra embodied the secondary structures of serum albumins were transformed by SSM. The site marker competitive and molecular docking measurements testified SSM bound to BSA/HSA at site I. In conclusion, the secondary structures of BSA/HSA were changed by SSM in the static fluorescence quenching processes with the non-radiation energy conversion. The binding sites were all located at site I and electrostatic attraction was the main force for the new compound. Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Xu Li
- College of Chemistry, Changchun Normal University, Changchun, China
| | - Xiaoyue Sun
- College of Chemistry, Changchun Normal University, Changchun, China
| | - Rui Zhao
- College of Chemistry, Changchun Normal University, Changchun, China
| | - Di Shao
- College of Chemistry, Changchun Normal University, Changchun, China
| | - Shuyun Bi
- College of Chemistry, Changchun Normal University, Changchun, China
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19
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Srivastava R, Alam MS. Influence of micelles on protein's denaturation. Int J Biol Macromol 2020; 145:252-261. [PMID: 31874269 DOI: 10.1016/j.ijbiomac.2019.12.154] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Revised: 10/05/2019] [Accepted: 12/17/2019] [Indexed: 11/15/2022]
Abstract
To evaluate the role of micelles for protein-surfactant interaction, we have studied the binding modes of serum albumin proteins (human (HSA) and rabbit (RSA)) with anionic-surfactant, sodium dodecyl sulfate (SDS) by using UV-visible, fluorescence, circular dichroism, fluorescence lifetime, atomic force microscopy (AFM) techniques. The study performed with three different pHs (below (4.0), at (4.7), and above (7.0) isoelectric point). Hydrocarbon chain of the surfactant, dominant role of hydrophobic forces and electrostatic interactions helped in polar interaction on protein on binding surfaces. The change above and below the critical micelle concentration (CMC) in fluorescence spectra was due to polarity of the microenvironment. The CD spectra different binding aspects as below CMC and above CMC, explain about folding and unfolding in secondary structure. Surfactant's binding induces fluctuations in the microenvironment of aromatic amino acid's residues of both proteins at different pHs. AFM images clarify the structural changes in both proteins (HSA & RSA). AFM images also indicate some different interesting conformational and structural changes in both proteins below/above the CMC of the surfactant. The molecular docking studies indicate the binding energy -4.8 kcal mol-1 and -4.7 kcal mol-1 for HSA-SDS and RSA-SDS, respectively. Structural changes can be seen above and below the CMC.
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Affiliation(s)
- Rachana Srivastava
- Council of Scientific and Industrial Research (CSIR) - Central Leather Research Institute (CLRI), Polymer Science &Technology Laboratory, Chennai 600020, India
| | - Md Sayem Alam
- Council of Scientific and Industrial Research (CSIR) - Central Leather Research Institute (CLRI), Polymer Science &Technology Laboratory, Chennai 600020, India; Chemical Science, Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201 002, India.
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20
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M. M, H.D. R. Evaluation of binding mode between anticancer drug etoposide and human serum albumin by numerous spectrometric techniques and molecular docking. Chem Phys 2020. [DOI: 10.1016/j.chemphys.2019.110593] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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21
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Paul S, Ghanti R, Sardar PS, Majhi A. Synthesis of a novel coumarin derivative and its binding interaction with serum albumins. Chem Heterocycl Compd (N Y) 2019. [DOI: 10.1007/s10593-019-02505-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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22
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Zhang Y, Zhao H, Wang X, Xiao H, Guan Y. Effects of Cremophor EL/ethanol/oleinic acid/water microemulsion on human blood components and coagulation function. Colloids Surf B Biointerfaces 2019; 180:254-262. [DOI: 10.1016/j.colsurfb.2019.04.058] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2019] [Revised: 04/25/2019] [Accepted: 04/28/2019] [Indexed: 01/16/2023]
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23
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Leal T, Abrunhosa L, Domingues L, Venâncio A, Oliveira C. BSA-based sample clean-up columns for ochratoxin A determination in wine: Method development and validation. Food Chem 2019; 300:125204. [PMID: 31336275 DOI: 10.1016/j.foodchem.2019.125204] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Revised: 05/28/2019] [Accepted: 07/17/2019] [Indexed: 01/14/2023]
Abstract
Analytical chromatographic techniques for mycotoxins control are well established, but they often depend on costly immunoaffinity sample clean-up. Serum albumins, particularly that from bovine origin (BSA), have stable binding affinity towards some mycotoxins, and can be cheaper alternative receptors for sample clean-up due to their wide availability. Thus, this work used BSA immobilized in agarose beads as a novel solid-phase extraction method for quantification of ochratoxin A (OTA) in wine. Constructed BSA-agarose columns could extract OTA efficiently from red wine after its dilution (4-fold) in 0.1 M Tris pH 8.0. The method was linear (R2 = 0.9999) in the OTA concentration range studied (0.05 to 3.0 μg L-1), with recovery rates above 98%. It also showed low detection (0.017 μg L-1) and quantification (0.051 μg L-1) limits. The efficacy of the BSA-based method was further validated by direct comparison with commercial immunoaffinity columns. Portuguese wines analyzed by both methods had agreeing results.
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Affiliation(s)
- Tânia Leal
- CEB - Centre of Biological Engineering, University of Minho, 4710-057 Braga, Portugal
| | - Luís Abrunhosa
- CEB - Centre of Biological Engineering, University of Minho, 4710-057 Braga, Portugal.
| | - Lucília Domingues
- CEB - Centre of Biological Engineering, University of Minho, 4710-057 Braga, Portugal.
| | - Armando Venâncio
- CEB - Centre of Biological Engineering, University of Minho, 4710-057 Braga, Portugal.
| | - Carla Oliveira
- CEB - Centre of Biological Engineering, University of Minho, 4710-057 Braga, Portugal.
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24
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Jaunet-Lahary T, Vercauteren DP, Fleury F, Laurent AD. Computational simulations determining disulfonic stilbene derivative bioavailability within human serum albumin. Phys Chem Chem Phys 2019; 20:18020-18030. [PMID: 29931001 DOI: 10.1039/c8cp00704g] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Disulfonic stilbene (DS) derivatives are a member of the large family of compounds widely employed in medicine and biology as modulators for membrane transporters or inhibitors of a protein involved in DNA repair. They constitute interesting compounds that have not yet been investigated within the bioavailability framework. No crystallographic structures exist involving such compounds embedded in the most common drug carrier, human serum albumin (HSA). The present work studies, for the first time, the physico-chemical features driving the inclusion of three DS derivatives (amino, nitro and acetamido, named DADS, DNDS and DATDS, respectively) within the four common HSA binding sites using combined molecular docking and molecular dynamics simulations. A careful analysis of each ligand within each of the studied binding sites is carried out, highlighting specific interactions and key residues playing a role in stabilizing the ligand within each pocket. The comparison between DADS, DNDS and DATDS reveals that depending on the binding site, the conclusions are rather different. For instance, the IB binding site shows a specificity to DADS compounds while IIIA is the most favorable site for DNDS and DATDS.
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Affiliation(s)
- Titouan Jaunet-Lahary
- Laboratoire CEISAM - UMR CNRS 6230, Université de Nantes, 2 Rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France.
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25
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Sun X, Bi S, Wu J, Zhao R, Shao D, Song Z. Multispectral and molecular docking investigations on the interaction of primethamine/trimethoprim with BSA/HSA. J Biomol Struct Dyn 2019; 38:934-942. [PMID: 30843766 DOI: 10.1080/07391102.2019.1588785] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Primethamine (PMA) and trimethoprim (TMP) were investigated as traditional coccidiostats on the binding of bovine serum albumin (BSA) and human serum albumin (HSA) by multispectral and molecular docking techniques. The Stern-Volmer plots and time-resolved fluorescence measurement declared that PMA/TMP quenching the intrinsic fluorescence of BSA/HSA was static quenching process. The binding constants (Ka) and binding sites (n) were calculated at different temperatures. Meanwhile, thermodynamic parameters showed electrostatic forces played a leading role in the interaction of PMA/TMP with BSA/HSA. Some metal ions such as K+, Mg2+, Cu2+, Ca2+, Zn2+ and Fe3+ had no effects on the binding system. The UV-vis absorption spectra confirmed that the interaction between PMA/TMP and BSA/HSA did happen. The analyses of synchronous fluorescence, FT-IR and circular dichroism spectra illustrated that PMA/TMP changed the secondary structures of BSA/HSA. According to Förster non-radiative energy transfer theory, the binding distance between PMA/TMP and BSA/HSA was calculated. The binding location of PMA/TMP to BSA/HSA was identified as sub-domain IIA, which was further confirmed by molecular docking.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Xiaoyue Sun
- College of Chemistry, Changchun Normal University, Changchun, China
| | - Shuyun Bi
- College of Chemistry, Changchun Normal University, Changchun, China
| | - Jun Wu
- College of Chemistry, Changchun Normal University, Changchun, China
| | - Rui Zhao
- College of Chemistry, Changchun Normal University, Changchun, China
| | - Di Shao
- College of Chemistry, Changchun Normal University, Changchun, China
| | - Zhe Song
- College of Chemistry, Changchun Normal University, Changchun, China
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26
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Rabbani G, Ahn SN. Structure, enzymatic activities, glycation and therapeutic potential of human serum albumin: A natural cargo. Int J Biol Macromol 2019; 123:979-990. [DOI: 10.1016/j.ijbiomac.2018.11.053] [Citation(s) in RCA: 139] [Impact Index Per Article: 27.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Revised: 10/07/2018] [Accepted: 11/11/2018] [Indexed: 12/26/2022]
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27
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Zhao R, Jia T, Shi H, Huang C. A versatile probe for serum albumin and its application for monitoring wounds in live zebrafish. J Mater Chem B 2019; 7:2782-2789. [DOI: 10.1039/c9tb00219g] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
A versatile probe for serum albumin and its application in monitoring wounds in live zebrafish.
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Affiliation(s)
- Rongrong Zhao
- The Education Ministry Key Laboratory of Resource Chemistry, Shanghai Key Laboratory of Rare Earth Functional Materials, and Shanghai Municipal Education Committee Key Laboratory of Molecular Imaging Probes and Sensors
- Department of Chemistry
- Shanghai Normal University
- Shanghai 200234
- China
| | - Ti Jia
- The Education Ministry Key Laboratory of Resource Chemistry, Shanghai Key Laboratory of Rare Earth Functional Materials, and Shanghai Municipal Education Committee Key Laboratory of Molecular Imaging Probes and Sensors
- Department of Chemistry
- Shanghai Normal University
- Shanghai 200234
- China
| | - Hongyuan Shi
- Department of Radiology
- The First Affiliated Hospital of Nanjing Medical University
- Nanjing
- P. R. China
| | - Chusen Huang
- The Education Ministry Key Laboratory of Resource Chemistry, Shanghai Key Laboratory of Rare Earth Functional Materials, and Shanghai Municipal Education Committee Key Laboratory of Molecular Imaging Probes and Sensors
- Department of Chemistry
- Shanghai Normal University
- Shanghai 200234
- China
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28
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Adam N, Adam C, Keskitalo M, Pfeuffer-Rooschüz J, Panak PJ. Interaction of Cm(III) with human serum albumin studied by time-resolved laser fluorescence spectroscopy and NMR. J Inorg Biochem 2018; 192:45-51. [PMID: 30594865 DOI: 10.1016/j.jinorgbio.2018.12.007] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Revised: 11/16/2018] [Accepted: 12/15/2018] [Indexed: 10/27/2022]
Abstract
The complexation of Cm(III) with human serum albumin (HSA) was investigated using time-resolved laser fluorescence spectroscopy (TRLFS). The Cm(III) HSA species is dominating the speciation between pH 7.0 and 9.3. The first coordination sphere is composed by three to four H2O molecules and five to six coordinating ligands from the protein. For the complex formation at pH 8.0 a conditional stability constant of logK = 6.16 ± 0.50 was determined. Furthermore, information on the Cm(III) HSA binding site were obtained. With increasing Cu(II) concentration the Cm(III) HSA complexation is suppressed whereas the addition of Zn(II) has no effect. This points to the complexation of Cm(III) at the N-terminal binding site (NTS) which is the primary Cu(II) binding site. NMR experiments with Cu(II), Eu(III) and Am(III) HSA show a decrease of the peak assigned to the His C2 proton of His 3, which is part of the NTS, with increasing metal ion concentration. This confirms the complexation of Eu(III) and Am(III) at the Cu(II) binding site NTS. The results presented in this study contribute to a better understanding of relevant biochemical reactions of incorporated actinides.
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Affiliation(s)
- Nicole Adam
- Karlsruhe Institute of Technology (KIT), Institute for Nuclear Waste Disposal (INE), P.O. Box 3640, 76021 Karlsruhe, Germany.
| | - Christian Adam
- Karlsruhe Institute of Technology (KIT), Institute for Nuclear Waste Disposal (INE), P.O. Box 3640, 76021 Karlsruhe, Germany
| | - Markus Keskitalo
- Karlsruhe Institute of Technology (KIT), Institute for Nuclear Waste Disposal (INE), P.O. Box 3640, 76021 Karlsruhe, Germany; Department of Chemistry - Radiochemistry, University of Helsinki, P.O. Box 55, 00014 Helsinki, Finland
| | - Jonathan Pfeuffer-Rooschüz
- University of Heidelberg, Institute of Physical Chemistry, Im Neuenheimer Feld 253, 69120 Heidelberg, Germany
| | - Petra J Panak
- Karlsruhe Institute of Technology (KIT), Institute for Nuclear Waste Disposal (INE), P.O. Box 3640, 76021 Karlsruhe, Germany; University of Heidelberg, Institute of Physical Chemistry, Im Neuenheimer Feld 253, 69120 Heidelberg, Germany
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29
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Pawar SK, Kalalbandi VKA, Jaldappagari S. Interaction of Indole Derivative with Human Serum Albumin: A Combined Spectroscopic and Molecular Dynamics Study. ChemistrySelect 2018. [DOI: 10.1002/slct.201802466] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Suma K. Pawar
- Department of ChemistryKarnatak University, Dharwad - 580003 Pavate Nagar
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30
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Das P, Chaudhari SK, Das A, Kundu S, Saha C. Interaction of flavonols with human serum albumin: a biophysical study showing structure-activity relationship and enhancement when coated on silver nanoparticles. J Biomol Struct Dyn 2018; 37:1414-1426. [PMID: 29633910 DOI: 10.1080/07391102.2018.1462732] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Binding affinities of flavonols namely quercetin, myricetin, and kaempferol to human serum albumin (HSA) were determined fluorimetrically and the order was observed to be myricetin > quercetin > kaempferol demonstrating structure-activity relationship. Quercetin-coated silver nanoparticles (AgNPs) show higher binding affinity to HSA compared to free quercetin with binding constants 6.04 × 107 M-1 and 4.2 × 106 M-1, respectively. Using site-specific markers it is concluded that free quercetin and that coated on AgNPs bind at different sites. Significant structural changes in circular dichroism (CD) spectra of HSA were recorded with quercetin-coated AgNPs compared to free quercetin. These results were further substantiated by time-resolved fluorescence spectroscopy where fluorescence life time of the tryptophan residue in HSA-quercetin-coated AgNPs complex decreased to 3.63 ns from 4.22 ns in HSA-quercetin complex. Isothermal calorimetric studies reveal two binding modes for quercetin-coated AgNPs and also higher binding constants compared to free quercetin. These higher binding affinities are attributed to altered properties of quercetin when coated on AgNPs enabling it to reach the binding sites other than site II where free quercetin mainly binds.
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Affiliation(s)
- Pratyusa Das
- a School of Biotechnology and Biological Sciences , Maulana Abul Kalam Azad University of Technology , BF-142, Salt Lake, Kolkata 700064 , India
| | - Sunil Kumar Chaudhari
- a School of Biotechnology and Biological Sciences , Maulana Abul Kalam Azad University of Technology , BF-142, Salt Lake, Kolkata 700064 , India
| | - Asmita Das
- a School of Biotechnology and Biological Sciences , Maulana Abul Kalam Azad University of Technology , BF-142, Salt Lake, Kolkata 700064 , India
| | - Somashree Kundu
- b UGC-DAE Consortium for Scientific Research, Kolkata Centre , LB-8 Salt Lake, Kolkata 700098 , India
| | - Chabita Saha
- a School of Biotechnology and Biological Sciences , Maulana Abul Kalam Azad University of Technology , BF-142, Salt Lake, Kolkata 700064 , India
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31
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Sengupta P, Sardar PS, Roy P, Dasgupta S, Bose A. Investigation on the interaction of Rutin with serum albumins: Insights from spectroscopic and molecular docking techniques. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2018; 183:101-110. [PMID: 29702339 DOI: 10.1016/j.jphotobiol.2018.04.019] [Citation(s) in RCA: 62] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2018] [Revised: 03/26/2018] [Accepted: 04/13/2018] [Indexed: 10/17/2022]
Abstract
The binding interaction of Rutin, a flavonoid, with model transport proteins, bovine serum albumin (BSA) and human serum albumin (HSA), were investigated using different spectroscopic techniques, such as fluorescence, time-resolved single photon counting (TCSPC) and circular dichroism (CD) spectroscopy as well as molecular docking method. The emission studies revealed that the fluorescence quenching of BSA/HSA by Rutin occurred through a simultaneous static and dynamic quenching process, and we have evaluated both the quenching constants individually. The binding constants of Rutin-BSA and Rutin-HSA system were found to be 2.14 × 106 M-1 and 2.36 × 106 M-1 at 298 K respectively, which were quite high. Further, influence of some biologically significant metal ions (Ca2+, Zn2+ and Mg2+) on binding of Rutin to BSA and HSA were also investigated. Thermodynamic parameters justified the involvement of hydrogen bonding and weak van der Waals forces in the interaction of Rutin with both BSA and HSA. Further a site-marker competitive experiment was performed to evaluate Rutin binding site in the albumins. Additionally, the CD spectra of BSA and HSA revealed that the secondary structure of the proteins was perturbed in the presence of Rutin. Finally protein-ligand docking studies have also been performed to determine the probable location of the ligand molecule.
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Affiliation(s)
- Priti Sengupta
- Department of Chemistry, Presidency University, 86/1 College Street, Kolkata 700073, West Bengal, India
| | - Pinki Saha Sardar
- Department of Chemistry, The Bhawanipur Education Society College, Kolkata 700020, West Bengal, India
| | - Pritam Roy
- Department of Chemistry, Indian Institute of Technology, Kharagpur, West Bengal, India
| | - Swagata Dasgupta
- Department of Chemistry, Indian Institute of Technology, Kharagpur, West Bengal, India
| | - Adity Bose
- Department of Chemistry, Presidency University, 86/1 College Street, Kolkata 700073, West Bengal, India.
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32
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Yaseen Z, Aswal VK, Zhou X, Kabir-ud-Din KUD, Haider S. Morphological changes in human serum albumin in the presence of cationic amphiphilic drugs. NEW J CHEM 2018. [DOI: 10.1039/c7nj02591b] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Binding of cationic amphiphilic drugs results in unfolding of human serum albumin.
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Affiliation(s)
- Z. Yaseen
- Department of Chemistry
- Islamic University of Science and Technology
- Pulwama 192 122
- India
| | - V. K. Aswal
- Solid State Physics Division
- Bhabha Atomic Research Centre
- Mumbai 400 008
- India
| | - X. Zhou
- UCL School of Pharmacy
- London WC1N 1AX
- UK
| | | | - S. Haider
- UCL School of Pharmacy
- London WC1N 1AX
- UK
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Rabbani N, Tabrez S, Islam BU, Rehman MT, Alsenaidy AM, AlAjmi MF, Khan RA, Alsenaidy MA, Khan MS. Characterization of colchicine binding with normal and glycated albumin: In vitro and molecular docking analysis. J Biomol Struct Dyn 2017; 36:3453-3462. [PMID: 28990867 DOI: 10.1080/07391102.2017.1389661] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
The transport of more than 90% of the drugs viz. anticoagulants, analgesics, and general anesthetics in the blood takes place by albumin. Hence, albumin is the prime protein needs to be investigated to find out the nature of drug binding. Serum albumin molecules are prone to glycation at elevated blood glucose levels as observed in diabetics. In this piece of work, glycation of bovine serum albumin (BSA) was carried out with glyceraldehyde and characterized by molecular docking and fluorometry techniques. Glycation of BSA showed 25% loss of free amino groups and decreased protein fluorescence (60%) with blue shift of 6 nm. The present study was also designed to evaluate the binding of colchicine (an anti-inflammatory drug) to native and glycated BSA and its ability to displace 8-analino-1-nephthalene sulfonic acid (ANS), from the BSA-ANS complex. Binding of ANS to BSA showed strong binding (Ka = 4.4 μM) with native conformation in comparison to glycated state (Ka = 8.4 μM). On the other hand, colchicine was able to quench the fluorescence of native BSA better than glycated BSA and also showed weaker affinity (Ka = 23 μM) for glycated albumin compared with native state (Ka = 16 μM). Molecular docking study showed that both glyceraldehyde and colchicine bind to common residues located near Sudlow's site I that explain the lower binding of colchicine in the glycated BSA. Based on our results, we believe that reduced drugs-binding affinity to glycated albumin may lead to drugs accumulation and precipitation in diabetic patients.
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Affiliation(s)
- Nayyar Rabbani
- a Department of Biochemistry, Protein Research Chair, College of Sciences , King Saud University , Riyadh 11451 , Saudi Arabia
| | - Shams Tabrez
- b King Fahd Medical Research Center , King Abdulaziz University , Jeddah 21589 , Saudi Arabia
| | - Badar Ul Islam
- c Department of Biochemistry, J. N. Medical College , Aligarh Muslim University , Aligarh 202002 , India
| | - Md Tabish Rehman
- d Department of Pharmacognosy, College of Pharmacy , King Saud University , Riyadh 11451 , Saudi Arabia
| | - Abdulrahman M Alsenaidy
- a Department of Biochemistry, Protein Research Chair, College of Sciences , King Saud University , Riyadh 11451 , Saudi Arabia
| | - Mohamed F AlAjmi
- d Department of Pharmacognosy, College of Pharmacy , King Saud University , Riyadh 11451 , Saudi Arabia
| | - Rais Ahmad Khan
- e Department of Chemistry, College of Sciences , King Saud University , Riyadh 11451 , Saudi Arabia
| | - Mohammad A Alsenaidy
- f Department of Pharmaceutics, College of Pharmacy , King Saud University , Riyadh , Saudi Arabia
| | - Mohd Shahnawaz Khan
- a Department of Biochemistry, Protein Research Chair, College of Sciences , King Saud University , Riyadh 11451 , Saudi Arabia
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Pielesz A, Biniaś D, Bobiński R, Sarna E, Paluch J, Waksmańska W. The role of topically applied l-ascorbic acid in ex-vivo examination of burn-injured human skin. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 185:279-285. [PMID: 28591686 DOI: 10.1016/j.saa.2017.05.055] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2017] [Revised: 05/24/2017] [Accepted: 05/25/2017] [Indexed: 06/07/2023]
Abstract
Wound treatment and healing is complex and is comprised of an elaborate set of processes including cellular, spectroscopic and biochemical ones as well as the "reaction" of local tissue to thermal injury. Vitamin C as l-ascorbic acid (LA) prevents injurious effects of oxidants because it reduces reactive oxygen species to stable molecules, it becomes oxidized to the short-lived ascorbyl radical. As a result, antioxidant treatment may contribute to minimizing injury in burn patients. The aim of this study is to assess changes in molecular structure of collagen extracted from human epidermis burn wound scab during incubation of the epidermis in l-ascorbic acid solution. The study will be performed using FTIR and FT Raman spectroscopies. During this research it was observed that the intensity of Raman peaks increased where healing was being modified by LA. The intensity of the amide III band at 1247cm-1 relative to the intensity at 1326cm-1 was used to test tissue repair degree at the incision site. FTIR spectra were recorded from frozen specimens of serum modified by LA; an analysis of shifts in the amide I band position was conducted. The appearance of a new band for frozen samples modified by LA was observed around 1149-1220cm-1. The above conclusions confirmed the creation of hydrogen bonds between NH stretch and CO. Samples being incubated in solutions of l-ascorbic acid demonstrated the absence of electrophoretic bands of albumin. Alterations in the surface of the skin incubated in l-ascorbic acid were investigated with the use of Scanning Electron Microscopy (SEM). A decrease in external symptoms of burn injury was noted in the damaged epidermis incubated in l-ascorbic acid.
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Affiliation(s)
- Anna Pielesz
- Faculty of Materials, Civil and Environmental Engineering, University of Bielsko-Biała, Poland.
| | - Dorota Biniaś
- Faculty of Materials, Civil and Environmental Engineering, University of Bielsko-Biała, Poland.
| | - Rafał Bobiński
- Faculty of Health Sciences, University of Bielsko-Biała, Poland.
| | - Ewa Sarna
- Faculty of Materials, Civil and Environmental Engineering, University of Bielsko-Biała, Poland.
| | - Jadwiga Paluch
- Faculty of Materials, Civil and Environmental Engineering, University of Bielsko-Biała, Poland.
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Pérez-Ruíz R, Lence E, Andreu I, Limones-Herrero D, González-Bello C, Miranda MA, Jiménez MC. A New Pathway for Protein Haptenation by β-Lactams. Chemistry 2017; 23:13986-13994. [PMID: 28791745 DOI: 10.1002/chem.201702643] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2017] [Indexed: 11/09/2022]
Abstract
The covalent binding of β-lactams to proteins upon photochemical activation has been demonstrated by using an integrated approach that combines photochemical, proteomic and computational studies, selecting human serum albumin (HSA) as a target protein and ezetimibe (1) as a probe. The results have revealed a novel protein haptenation pathway for this family of drugs that is an alternative to the known nucleophilic ring opening of β-lactams by the free amino group of lysine residues. Thus, photochemical ring splitting of the β-lactam ring, following a formal retro-Staudinger reaction, gives a highly reactive ketene intermediate that is trapped by the neighbouring lysine residues, leading to an amide adduct. For the investigated 1/HSA system, covalent modification of residues Lys414 and Lys525, which are located in sub-domains IIIA and IIIB, respectively, occurs. The observed photobinding may constitute the key step in the sequence of events leading to photoallergy. Docking and molecular dynamics simulation studies provide an insight into the molecular basis of the selectivity of 1 for these HSA sub-domains and the covalent modification mechanism. Computational studies also reveal positive cooperative binding of sub-domain IIIB that explains the experimentally observed modification of Lys414, which is located in a barely accessible pocket (sub-domain IIIA).
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Affiliation(s)
- Raúl Pérez-Ruíz
- Departamento de Química/Instituto de Tecnología Química UPV-CSIC, Universitat Politècnica de Valencia, Camino de Vera s/n, 46071, Valencia, Spain.,Present address: Instituto Imdea Energía, Parque Tecnológico de Móstoles, Av. Ramón de la Sagra, 3., 28935, Móstoles, Madrid, Spain
| | - Emilio Lence
- Centro Singular de Investigación en Química Biolóxica e Materiais, Moleculares (CIQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, calle Jenaro de la Fuente s/n, 15782, Santiago de Compostela, Spain
| | - Inmaculada Andreu
- Instituto de Investigación Sanitaria La Fe, Hospital Universitari i Politècnic La Fe, Avenida de Fernando Abril Martorell 106, 46026, Valencia, Spain
| | - Daniel Limones-Herrero
- Departamento de Química/Instituto de Tecnología Química UPV-CSIC, Universitat Politècnica de Valencia, Camino de Vera s/n, 46071, Valencia, Spain
| | - Concepción González-Bello
- Centro Singular de Investigación en Química Biolóxica e Materiais, Moleculares (CIQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, calle Jenaro de la Fuente s/n, 15782, Santiago de Compostela, Spain
| | - Miguel A Miranda
- Departamento de Química/Instituto de Tecnología Química UPV-CSIC, Universitat Politècnica de Valencia, Camino de Vera s/n, 46071, Valencia, Spain
| | - M Consuelo Jiménez
- Departamento de Química/Instituto de Tecnología Química UPV-CSIC, Universitat Politècnica de Valencia, Camino de Vera s/n, 46071, Valencia, Spain
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Tan S, Chi Z, Shan Y, Wen Z, Li W. Interaction studies of polybrominated diphenyl ethers (PBDEs) with human serum albumin (HSA): Molecular docking investigations. ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY 2017; 54:34-39. [PMID: 28672162 DOI: 10.1016/j.etap.2017.06.005] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2017] [Revised: 06/12/2017] [Accepted: 06/19/2017] [Indexed: 06/07/2023]
Abstract
This work has evaluated the interactions of HSA and typical PBDEs (BDE47, BDE99, BDE100, BDE153 and BDE209) at molecular level by modelling. Apart from the BDE209, PBDEs with higher molecular weight show higher binding energy with the residues of HSA. The BDE209 without H atoms has the lowest binding energy (-ΔGbinding: 4.30calmol-1) than other PBDEs (-ΔGbinding: 7.93-8.42calmol-1). The BDE99 shows a higher binding energy than its isomer (BDE100). On the other hand, the lgKow-depth plotting figure shows that a higher Kow value (hydrophobicity) of PBDEs is accompanied by a deeper binding site within the central channel of HSA. This work may provide a theoretical method to assess the transport and distribution of PBDEs in human body.
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Affiliation(s)
- Songwen Tan
- Department of Environmental Engineering, Harbin Institute of Technology, Weihai, 2# Wenhua West Road, Weihai, 264209, PR China
| | - Zhenxing Chi
- Department of Environmental Engineering, Harbin Institute of Technology, Weihai, 2# Wenhua West Road, Weihai, 264209, PR China; State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, 73# Huanghe Road, Harbin 150090, PR China; Guangzhou Key Laboratory of Environmental Exposure and Health, School of Environment, Jinan University, Guangzhou 510632, PR China.
| | - Ye Shan
- Department of Environmental Engineering, Harbin Institute of Technology, Weihai, 2# Wenhua West Road, Weihai, 264209, PR China
| | - Zhengzhong Wen
- Department of Environmental Engineering, Harbin Institute of Technology, Weihai, 2# Wenhua West Road, Weihai, 264209, PR China
| | - Weiguo Li
- Department of Environmental Engineering, Harbin Institute of Technology, Weihai, 2# Wenhua West Road, Weihai, 264209, PR China
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37
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Preparation and evaluation of mixed-mode resins with tryptophan analogues as functional ligands for human serum albumin separation. Chin J Chem Eng 2017. [DOI: 10.1016/j.cjche.2016.12.010] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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38
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Wang H, Shi H, Pang J, Song X, Xu C, Sun Z. STUDIES ON THE INTERACTION BETWEEN TRIPTOLIDE AND BOVINE SERUM ALBUMIN (BSA) BY SPECTROSCOPIC AND MOLECULAR MODELING METHODS. AFRICAN JOURNAL OF TRADITIONAL, COMPLEMENTARY, AND ALTERNATIVE MEDICINES : AJTCAM 2017; 13:121-129. [PMID: 28480368 PMCID: PMC5412182 DOI: 10.21010/ajtcam.v13i6.17] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Background: Triptolide is a major active constituent isolated from Tripterygiumwilfordii Hook F, a Chinese herbal medicine. This study investigated the intermolecular interaction between triptolide and bovine serum albumin (BSA). Materials and Methods: The fluorescence, circular dichroism (CD) and molecular docking methods were used to investigate the intermolecular interaction between triptolide and BSA. The binding constant, the number of binding sites, binding subdomain and the thermodynamic parameters were measured. Results: The results of this experiment revealed that the intrinsic fluorescence of BSA was effectively quenched by triptolide via static quenching. The experimental results of synchronous fluorescence and CD spectra showed that the conformation of BSA was changed in the presence of triptolide. Conclusion: It indicated that triptolide could spontaneously bind on site II (subdomain IIIA) of BSA mainly via hydrogen bonding interactions and Van der Waals force.
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Affiliation(s)
- Haidong Wang
- Department of Pharmacy, The First People's Hospital of Lianyungang, Jiangsu, Lianyungang 222002, PR China
| | - Hailang Shi
- Department of Pharmacy, Yanqi Hospital of Xinjiang Agriculture second Division Xinjiang, Yanqi 841100, PR China
| | - Jie Pang
- Department of Pharmacy, The First People's Hospital of Lianyungang, Jiangsu, Lianyungang 222002, PR China
| | - Xingfa Song
- Department of Pharmacy, The First People's Hospital of Lianyungang, Jiangsu, Lianyungang 222002, PR China
| | - Caiyun Xu
- Department of Pharmacy, The First People's Hospital of Lianyungang, Jiangsu, Lianyungang 222002, PR China
| | - Zengxian Sun
- Department of Pharmacy, The First People's Hospital of Lianyungang, Jiangsu, Lianyungang 222002, PR China
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39
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Cao C, Zhou ZL, Zheng L, Huang QL, Du FP. Dilational rheology of different globular protein with imidazolium-based ionic liquid surfactant adsorption layer at the decane/water interface. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2017.02.121] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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40
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Yang W, Yang L, Yi Z, Wu Z, Nie J, Zhang A. Investigating the affinity of BDE154 and 3OH-BDE154 with HSA: Experimental and simulation validation. ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY 2017; 51:85-93. [PMID: 28327436 DOI: 10.1016/j.etap.2017.03.004] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2016] [Revised: 02/11/2017] [Accepted: 03/02/2017] [Indexed: 06/06/2023]
Abstract
The physicochemical properties of polybrominated diphenyl ethers are important for modeling their transport, but these data are often missing. Here, satisfactory bioactivity results were obtained using human serum albumin as the carrier, 2,2',4,4',5,6'-hexabromodiphenyl ether (BDE154) and 3-hydroxy-2,2',4,4', 5,6'-hexabromodiphenyl ether (3OH-BDE154) as the ligands, using UV-visible absorbance, fluorescence, circular dichroism, molecular docking, and molecular dynamics methods. The interactions between human serum albumin and BDE154 or 3OH-BDE154 were verified, consistent with the static quenching procedure. At pH 7.4, the binding constants of the complexes for site I were relatively comparable and increased in the order BDE154<3OH-BDE154. Then, the secondary structure and kinetic parameters of albumin were analyzed using the circular dichroism spectra and GROMACS software. The data obtained from these simulations indicate that hydrophobic attraction might be the key factor for the stability of complexes. The docking experiments provided further insight into the hydrophobic pocket and showed that 3OH-BDE154 has a stronger binding affinity to human serum albumin than BDE154. The experimental spectral data were obtained and compared with the simulation results, showing good agreement. A detailed analysis of PBDEs-HSA interactions would provide valuable information to better understand the interaction on this class of compounds.
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Affiliation(s)
- Wu Yang
- Guangxi Colleges and Universities Key Laboratory of Food Safety and Detection, Collaborative Innovation Center for Water Pollution Control and Water Safety in Karst Area, College of Chemistry and Bioengineering, Guilin University of Technology, Guilin 541004, China
| | - Lulu Yang
- Guangxi Colleges and Universities Key Laboratory of Food Safety and Detection, Collaborative Innovation Center for Water Pollution Control and Water Safety in Karst Area, College of Chemistry and Bioengineering, Guilin University of Technology, Guilin 541004, China
| | - Zhongsheng Yi
- Guangxi Colleges and Universities Key Laboratory of Food Safety and Detection, Collaborative Innovation Center for Water Pollution Control and Water Safety in Karst Area, College of Chemistry and Bioengineering, Guilin University of Technology, Guilin 541004, China.
| | - Zhiwei Wu
- Guangxi Colleges and Universities Key Laboratory of Food Safety and Detection, Collaborative Innovation Center for Water Pollution Control and Water Safety in Karst Area, College of Chemistry and Bioengineering, Guilin University of Technology, Guilin 541004, China
| | - Jinfang Nie
- Guangxi Colleges and Universities Key Laboratory of Food Safety and Detection, Collaborative Innovation Center for Water Pollution Control and Water Safety in Karst Area, College of Chemistry and Bioengineering, Guilin University of Technology, Guilin 541004, China
| | - Aiqian Zhang
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
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41
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Das S, Islam MM, Jana GC, Patra A, Jha PK, Hossain M. Molecular binding of toxic phenothiazinium derivatives, azures to bovine serum albumin: A comparative spectroscopic, calorimetric, and in silico study. J Mol Recognit 2017; 30. [PMID: 28101950 DOI: 10.1002/jmr.2609] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2016] [Revised: 12/21/2016] [Accepted: 12/22/2016] [Indexed: 11/09/2022]
Affiliation(s)
- Somnath Das
- Department of Chemistry and Chemical Technology; Vidyasagar University; Midnapore West Bengal India
| | - Md. Maidul Islam
- Department of Chemistry; Aliah University; Kolkata West Bengal India
| | - Gopal Chandra Jana
- Department of Chemistry and Chemical Technology; Vidyasagar University; Midnapore West Bengal India
| | - Anirudha Patra
- Department of Chemistry and Chemical Technology; Vidyasagar University; Midnapore West Bengal India
| | - Pradeep K. Jha
- SMST; Indian Institute of Technology Kharagpur; Kharagpur West Bengal India
| | - Maidul Hossain
- Department of Chemistry and Chemical Technology; Vidyasagar University; Midnapore West Bengal India
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42
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Hosseini-Kharat M, Karami K, Saeidifar M, Rizzoli C, Zahedi-Nasab R, Sohrabijam Z, Sharifi T. A novel Pd(ii) CNO pincer complex of MR (methyl red): synthesis, crystal structure, interaction with human serum albumin (HSA) in vitro and molecular docking. NEW J CHEM 2017. [DOI: 10.1039/c7nj01415e] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The C–H activation of methyl red (MR) (MR = 2-{[4-(dimethylamino)phenyl]diazenyl}benzoic acid) was achieved by reaction with Pd(OAc)2under mild conditions.
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Affiliation(s)
| | - Kazem Karami
- Department of Chemistry
- Isfahan University of Technology
- Isfahan
- Iran
| | - Maryam Saeidifar
- Department of Nanotechnology and Advanced Materials
- Materials and Energy Research Center
- Karaj
- Iran
| | - Corrado Rizzoli
- Department of Chemistry
- Life Sciences and Environmental Sustainability
- University of Parma
- I-43124 Parma
- Italy
| | | | - Zahra Sohrabijam
- Department of Nanotechnology and Advanced Materials
- Materials and Energy Research Center
- Karaj
- Iran
| | - Tayebeh Sharifi
- Department of Chemistry
- Isfahan University of Technology
- Isfahan
- Iran
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43
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Pawar SK, Punith R, Naik RS, Seetharamappa J. Spectroscopic and molecular modeling approaches to investigate the binding of proton pump inhibitors to human serum albumin. J Biomol Struct Dyn 2016; 35:3205-3220. [DOI: 10.1080/07391102.2016.1251337] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Suma K. Pawar
- Department of Chemistry, Karnatak University, Dharwad 580003, India
| | - Reeta Punith
- Department of Chemistry, Karnatak University, Dharwad 580003, India
| | - Roopa S. Naik
- Department of Chemistry, Karnatak University, Dharwad 580003, India
| | - J. Seetharamappa
- Department of Chemistry, Karnatak University, Dharwad 580003, India
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44
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Generalized crystallography and bound-water modular structures determining morphogenesis and size of biosystems. Struct Chem 2016. [DOI: 10.1007/s11224-016-0837-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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45
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Kowalczyk D, Slomkowski S, Wang FW. Changes in Conformation of Human Serum Albumin (HSA) and Gamma Globulins (γG) upon Adsorption to Polystyrene and Poly(styrene/acrolein) Latexes: Studies by Fluorescence Spectroscopy. J BIOACT COMPAT POL 2016. [DOI: 10.1177/088391159400900304] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Changes of human serum albumin (HSA) and gamma globulins (γG), labelled with 1-pyrene-carboxaldehyde (PCA) and/or with 1,3-bis(1- pyrene)-propane (BPP), resulting from interactions with polystyrene (PS) and poly(styrene/acrolein) (PSA) latexes, were investigated by fluorescence spectros copy. The proteins in solution readily exchanged with the adsorbed proteins. The fluorescence spectra of the PCA label and BPP probe, incorporated into the protein macromolecules, indicate that the protein macromolecules undergo sig nificant conformational changes on contact with the surface of the latex par ticles, and that these changes are not reversible. The internal fluidity for desorbed protein macromolecules is lower than before the interaction with the latex particles. Moreover, due to the conformational changes the PCA labels, formerly present in the hydrophilic and hydrophobic protein regions, became located predominantly in the latter. The differences in the emission spectra for the labelled proteins before attachment to the latex particles and after desorp tion were used to study the kinetics of the protein conformational changes. The dependence of the overall rate constants for protein conformational rearrange ments on the latex concentration was investigated.
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Affiliation(s)
- Dorota Kowalczyk
- Center of Molecular and Macromolecular Studies Polish Academy of Sciences Sienkiewicza 112, 90-363 Lodz, Poland
| | - Stanislaw Slomkowski
- Center of Molecular and Macromolecular Studies Polish Academy of Sciences Sienkiewicza 112, 90-363 Lodz, Poland
| | - Francis W. Wang
- National Institute of Standards and Technology Gaithersburg, MD 20899
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46
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Characterisation of molten globule-like state of sheep serum albumin at physiological pH. Int J Biol Macromol 2016; 89:605-13. [PMID: 27180298 DOI: 10.1016/j.ijbiomac.2016.05.036] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2016] [Revised: 04/05/2016] [Accepted: 05/10/2016] [Indexed: 01/26/2023]
Abstract
Sheep serum albumin (SSA) is a 583 amino acid residues long multidomain monomeric protein which is rich in cysteine and low in tryptophan content. The serum albumins (from human, bovine and sheep) play a vital role among all proteins investigated until now, as they are the most copious circulatory proteins. We have purified SSA from sheep kidneys by a simple and efficient two-step purification procedure. Further, we have studied urea-induced denaturation of SSA by monitoring changes in the difference absorption coefficient at 287nm (Δε287), intrinsic fluorescence emission intensity at 347nm (F347) and mean residue ellipticity at 222nm ([θ]222) at pH 7.4 and 25°C. The coincidence of denaturation curves of these optical properties suggests that urea-induced denaturation is a bi-phasic process (native (N) state↔intermediate (X) state↔denatured (D) state) with a stable intermediate populated around 4.2-4.7M urea. The intermediate (X) state was further characterized by the far-UV and near-UV CD, dynamic light scattering (DLS) and fluorescence using 1-anilinonaphthalene-8-sulfonic acid (ANS) binding method. All denaturation curves were analyzed for Gibbs free energy changes associated with the equilibria, N state↔X state and X state↔D state in the absence of urea.
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47
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Mallick S, Pal K, Koner AL. Probing microenvironment of micelle and albumin using diethyl 6-(dimethylamino)naphthalene-2,3-dicarboxylate: An electroneutral solvatochromic fluorescent probe. J Colloid Interface Sci 2016; 467:81-89. [DOI: 10.1016/j.jcis.2015.12.022] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2015] [Revised: 12/08/2015] [Accepted: 12/11/2015] [Indexed: 11/15/2022]
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48
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Sudha A, Srinivasan P, Thamilarasan V, Sengottuvelan N. Exploring the binding mechanism of 5-hydroxy-3',4',7-trimethoxyflavone with bovine serum albumin: Spectroscopic and computational approach. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2016; 157:170-181. [PMID: 26773261 DOI: 10.1016/j.saa.2015.12.028] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2015] [Revised: 12/16/2015] [Accepted: 12/20/2015] [Indexed: 06/05/2023]
Abstract
The current study was carried out to investigate the binding mechanism of a potential flavonoid compound 5-hydroxy-3',4',7-trimethoxyflavone (HTMF) with bovine serum albumin (BSA) using ultraviolet-visible, fluorescence, circular dichroism (CD) spectral measurements along with molecular docking and molecular dynamics (MD) simulation. It was confirmed from fluorescence spectra that the intrinsic fluorescence of BSA was robustly quenched by HTMF through a static quenching mechanism. The number of binding sites (n) for HTMF binding on BSA was found to be about one. The thermodynamic parameters estimated from the van't Hoff plot specified that hydrophobic force was the predominant force in the HTMF-BSA complex and there also exist hydrogen bonds and electrostatic interactions. The effect of HTMF on the BSA conformation examined using CD studies revealed that there is a decrease in the helical content of BSA upon HTMF interaction. The results of molecular docking study shed light on the binding mode which exposed that HTMF bind within the hydrophobic pocket of the subdomain IIIA of BSA. The stability of HTMF-BSA complex with respect to free protein was analyzed from the molecular dynamic studies. The electronic structure analysis of HTMF was achieved by using density functional theory (DFT) calculations at B3LYP/6-31G** level to support its antioxidant role. The results of computational analysis are in good consistence with the experimental data and the present findings suggested that HTMF exhibits a good binding propensity to BSA protein which will be helpful for the drug design.
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Affiliation(s)
- A Sudha
- Department of Bioinformatics, Alagappa University, Karaikudi 630 004, India
| | - P Srinivasan
- Department of Bioinformatics, Alagappa University, Karaikudi 630 004, India; Department of Animal Health and Management, Alagappa University, Karaikudi 630 004, India.
| | - V Thamilarasan
- Department of Industrial Chemistry, Alagappa University, Karaikudi 630 003, India
| | - N Sengottuvelan
- Department of Chemistry, Directorate of Distance Education, Alagappa University, Karaikudi 630 004, India
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Szkudlarek A, Sułkowska A, Maciążek-Jurczyk M, Chudzik M, Równicka-Zubik J. Effects of non-enzymatic glycation in human serum albumin. Spectroscopic analysis. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2016; 152:645-653. [PMID: 25735846 DOI: 10.1016/j.saa.2015.01.120] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2014] [Accepted: 01/31/2015] [Indexed: 06/04/2023]
Abstract
Human serum albumin (HSA), transporting protein, is exposed during its life to numerous factors that cause its functions become impaired. One of the basic factors --glycation of HSA--occurs in diabetes and may affect HSA-drug binding. Accumulation of advanced glycation end-products (AGEs) leads to diseases e.g. diabetic and non-diabetic cardiovascular diseases, Alzheimer disease, renal disfunction and in normal aging. The aim of the present work was to estimate how non-enzymatic glycation of human serum albumin altered its tertiary structure using fluorescence technique. We compared glycated human serum albumin by glucose (gHSA(GLC)) with HSA glycated by fructose (gHSA(FRC)). We focused on presenting the differences between gHSA(FRC) and nonglycated (HSA) albumin used acrylamide (Ac), potassium iodide (KI) and 2-(p-toluidino)naphthalene-6-sulfonic acid (TNS). Changes of the microenvironment around the tryptophan residue (Trp-214) of non-glycated and glycated proteins was investigated by the red-edge excitation shift method. Effect of glycation on ligand binding was examined by the binding of phenylbutazone (PHB) and ketoprofen (KP), which a primary high affinity binding site in serum albumin is subdomain IIA and IIIA, respectively. At an excitation and an emission wavelength of λex 335nm and λem 420nm, respectively the increase of fluorescence intensity and the blue-shift of maximum fluorescence was observed. It indicates that the glycation products decreases the polarity microenvironment around the fluorophores. Analysis of red-edge excitation shift method showed that the red-shift for gHSA(FRC) is higher than for HSA. Non-enzymatic glycation also caused, that the Trp residue of gHSA(FRC) becomes less accessible for the negatively charged quencher (I(-)), KSV value is smaller for gHSA(FRC) than for HSA. TNS fluorescent measurement demonstrated the decrease of hydrophobicity in the glycated albumin. KSV constants for gHSA-PHB systems are higher than for the unmodified serum albumin, while KSV values for gHSA-KP systems are only slightly lower than that obtained for HSA-KP. The affinity of PHB to the glycated HSA is stronger than to the non-glycated in the first class binding sites within subdomain IIA, in the vicinity of Trp-214. Ketoprofen bound to unmodified human serum albumin stronger than for glycated albumin and one class of binding sites is observed (Scatchard linear plots).
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Affiliation(s)
- A Szkudlarek
- Medical University of Silesia, Faculty of Pharmacy, Department of Physical Pharmacy, Katowice, Poniatowskiego 15, Poland
| | - A Sułkowska
- Medical University of Silesia, Faculty of Pharmacy, Department of Physical Pharmacy, Katowice, Poniatowskiego 15, Poland.
| | - M Maciążek-Jurczyk
- Medical University of Silesia, Faculty of Pharmacy, Department of Physical Pharmacy, Katowice, Poniatowskiego 15, Poland
| | - M Chudzik
- Medical University of Silesia, Faculty of Pharmacy, Department of Physical Pharmacy, Katowice, Poniatowskiego 15, Poland
| | - J Równicka-Zubik
- Medical University of Silesia, Faculty of Pharmacy, Department of Physical Pharmacy, Katowice, Poniatowskiego 15, Poland
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Mitra P, Pal U, Chandra Maiti N, Ghosh A, Bhunia A, Basu S. Identification of modes of interactions between 9-aminoacridine hydrochloride hydrate and serum proteins by low and high resolution spectroscopy and molecular modeling. RSC Adv 2016. [DOI: 10.1039/c6ra04140j] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
Photophysical studies on binding interactions of 9-aminoacridine hydrochloride hydrate (9AA-HCl) with serum proteins using low and high resolution spectroscopic techniques in conjunction with molecular modeling.
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Affiliation(s)
- Piyali Mitra
- Chemical Sciences Division
- Saha Institute of Nuclear Physics
- Kolkata 700064
- India
| | - Uttam Pal
- Structural Biology & Bioinformatics Division
- CSIR-Indian Institute of Chemical Biology
- Kolkata 700032
- India
| | - Nakul Chandra Maiti
- Structural Biology & Bioinformatics Division
- CSIR-Indian Institute of Chemical Biology
- Kolkata 700032
- India
| | - Anirban Ghosh
- Department of Biophysics
- Bose Institute
- Kolkata 700054
- India
| | - Anirban Bhunia
- Department of Biophysics
- Bose Institute
- Kolkata 700054
- India
| | - Samita Basu
- Chemical Sciences Division
- Saha Institute of Nuclear Physics
- Kolkata 700064
- India
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