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Azaldegui I, Fiorentino MA, Morrell E, Odriozola E, García JA, Cantón G. Salmonellosis in adult cattle in Central Argentina: case series. Braz J Microbiol 2024:10.1007/s42770-024-01419-6. [PMID: 38888694 DOI: 10.1007/s42770-024-01419-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Accepted: 06/03/2024] [Indexed: 06/20/2024] Open
Abstract
Salmonellosis is an infectious disease caused by bacteria belonging to the Salmonella genus. Bovine salmonellosis is more frequent in young cattle under intensive overcrowd husbandry conditions, and therefore uncommon in adults. We report four outbreaks of clinical salmonellosis due to Salmonella Typhimurium, Salmonella Newport and Salmonella Dublin provoking outbreaks of diarrheic/septicemic disease in adult cattle of Central Argentina. Anamnesis information, clinical, pathological, and bacteriological findings were retrospective analyzed. This report emphasizes the importance to include salmonellosis among the differential diagnosis of clinical enteric/septicemic disease in adult cattle under different husbandry conditions in Argentina. The source of Salmonella could not be established in these outbreaks.
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Affiliation(s)
- Ignacio Azaldegui
- Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible (IPADS) (CONICET-INTA Balcarce), RN 226 km. 73.5, Balcarce, 7620, Argentina
| | - María Andrea Fiorentino
- Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible (IPADS) (CONICET-INTA Balcarce), RN 226 km. 73.5, Balcarce, 7620, Argentina
| | - Eleonora Morrell
- Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible (IPADS) (CONICET-INTA Balcarce), RN 226 km. 73.5, Balcarce, 7620, Argentina
| | - Ernesto Odriozola
- Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible (IPADS) (CONICET-INTA Balcarce), RN 226 km. 73.5, Balcarce, 7620, Argentina
| | - Juan Agustín García
- Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible (IPADS) (CONICET-INTA Balcarce), RN 226 km. 73.5, Balcarce, 7620, Argentina
| | - Germán Cantón
- Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible (IPADS) (CONICET-INTA Balcarce), RN 226 km. 73.5, Balcarce, 7620, Argentina.
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Xu H, Chen Y, Yang D, Wang H, Tang Z, Dai X, Chen H. Improved microalgae growth and lipid production in anaerobic digestate with ultraviolet radiation pretreatment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 922:171339. [PMID: 38428595 DOI: 10.1016/j.scitotenv.2024.171339] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2023] [Revised: 02/26/2024] [Accepted: 02/27/2024] [Indexed: 03/03/2024]
Abstract
Inappropriate sterilization strategies inhibit microalgal growth when culturing microalgae with anaerobic digestate. This study aimed to scientifically select a low-cost disinfection pretreatment of anaerobic digestate for large-scale microalgae cultivations. In this work, three different methods, including autoclaving, ultraviolet or NaClO treatments, were employed to sterilize the municipal anaerobic digestate. Scenedesmus quadricauda was then cultured in diluted liquid digestate for the simultaneous lipid production and nutrient removal. The results indicated that the growth of S. quadricauda was inhibited after NaClO treatment due to the residual free chlorine. The 15-min ultraviolet effectively mitigated microbial contamination and increasing nutrient availability, enhancing the electron transport of microalgal photosynthesis. After 6-days cultivation, the microalgal biomass concentration of the ultraviolet group was 1.09 g/L, comparable to that of the autoclaving group (1.15 g/L). High nutrient removal efficiency was observed: COD (93.30 %), NH4+-N (92.56 %), TN (85.82 %) and TP (95.12 %). Moreover, S. quadricauda outcompeted the indigenous microorganisms, contributing to its dominance in the culture system of ultraviolet group. The facultative anaerobe Comamonadaceae and aerobes Moraxellaceae, rather than strict anaerobe Paludibacteraceae and Bacteroidetes_vadinHA17, played vital roles in synergistic removal of contaminants by bacteria and algae. The potential competition for nitrogen and phosphorus by bacteria contributed to the ultraviolet group having the greatest lipid content (48.19 %). Therefore, this work suggested using 15-min ultraviolet treatment for anaerobic digestate in large-scale microalgae cultivation.
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Affiliation(s)
- Haolian Xu
- State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China
| | - Yongdong Chen
- State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China
| | - Donghai Yang
- State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China
| | - Hong Wang
- State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China
| | - Zhenzhen Tang
- State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China
| | - Xiaohu Dai
- State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China.
| | - Hongbin Chen
- State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China
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Dallaire-Lamontagne M, Lebeuf Y, Allard Prus JM, Vandenberg GW, Saucier L, Deschamps MH. Characterization of hatchery residues for on farm implementation of circular waste management practices. WASTE MANAGEMENT (NEW YORK, N.Y.) 2024; 175:305-314. [PMID: 38237406 DOI: 10.1016/j.wasman.2024.01.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 01/05/2024] [Accepted: 01/07/2024] [Indexed: 01/29/2024]
Abstract
The conventional management of hatchery residues is associated with greenhouse gas and unpleasant odor emissions, the presence of pathogens and high disposal costs for producers. To address these issues, on-farm alternatives like composting, fermentation, and insect valorization are promising approaches. This study aims to characterize hatchery residues and define critical quality thresholds to identify effective processes for their management. Hatchery residue samples were collected bi-monthly over a year (N = 24) and were analyzed for proximate composition (dry matter, ash, energy, crude protein, crude lipid, crude fiber, carbohydrates), pH, color (L*a*b*, Chroma) and microbiological loads (total aerobic mesophilic counts, coliforms, lactic acid bacteria). Volatile fatty acid composition was also measured (N = 8). Significant correlation coefficients were found between TAM and LAB loads and residue characterization (pH, chroma, crude fibers, carbohydrates, and temperature). On a dry matter basis, residues were high in energy (2498 to 5911 cal/g), proteins (21.3 to 49.4 %) and lipids (14.6 to 29.1 %), but low in carbohydrates (0 to 15.3 %) despite temporal fluctuations. Ash content varied widely (8.6 to 49.1 %, dry matter) and is influenced by eggshell content. Microbiological loads were high for total aerobic mesophilic bacteria (6.5 to 9.1 log cfu/g), coliforms (5.4 to 8.5 log cfu/g) and lactic acid bacteria (6.7 to 9.0 log cfu/g). Valorization of hatchery residues on the farm will depends on the optimization of effective upstream stabilization processes. The critical points are discussed according to the valorization potentials that could be implemented on the farm from composting to upcycling by insects.
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Affiliation(s)
- Mariève Dallaire-Lamontagne
- Département des sciences animales, Faculté des sciences de l'agriculture et de l'alimentation, Université Laval, 2425 rue de l'Agriculture, Québec, QC G1V 0A6, Canada; Institut sur la nutrition et les aliments fonctionnels, Université Laval, 2440 Bd Hochelaga, Québec, QC G1V 0A6, Canada; Chair of Educational Leadership (CLE) in Primary Production and Processing of Edible Insects (CLEIC https://cleic.fsaa.ulaval.ca/en/), Canada; Inscott, 1798 Route du Président-Kennedy, Scott, QC G0S 3G0, Canada.
| | - Yolaine Lebeuf
- Département des sciences animales, Faculté des sciences de l'agriculture et de l'alimentation, Université Laval, 2425 rue de l'Agriculture, Québec, QC G1V 0A6, Canada; Institut sur la nutrition et les aliments fonctionnels, Université Laval, 2440 Bd Hochelaga, Québec, QC G1V 0A6, Canada.
| | - Jean-Michel Allard Prus
- Couvoir Scott Ltée, 1798 Route du Président-Kennedy, Scott, QC G0S 3G0, Canada; Inscott, 1798 Route du Président-Kennedy, Scott, QC G0S 3G0, Canada.
| | - Grant W Vandenberg
- Département des sciences animales, Faculté des sciences de l'agriculture et de l'alimentation, Université Laval, 2425 rue de l'Agriculture, Québec, QC G1V 0A6, Canada; Chair of Educational Leadership (CLE) in Primary Production and Processing of Edible Insects (CLEIC https://cleic.fsaa.ulaval.ca/en/), Canada.
| | - Linda Saucier
- Département des sciences animales, Faculté des sciences de l'agriculture et de l'alimentation, Université Laval, 2425 rue de l'Agriculture, Québec, QC G1V 0A6, Canada; Institut sur la nutrition et les aliments fonctionnels, Université Laval, 2440 Bd Hochelaga, Québec, QC G1V 0A6, Canada; Centre de recherche en infectiologie porcine et avicole (CRIPA), 3200 Sicotte, bureau 3115-4, Saint-Hyacinthe, QC J2S 2M2, Canada.
| | - Marie-Hélène Deschamps
- Département des sciences animales, Faculté des sciences de l'agriculture et de l'alimentation, Université Laval, 2425 rue de l'Agriculture, Québec, QC G1V 0A6, Canada; Institut sur la nutrition et les aliments fonctionnels, Université Laval, 2440 Bd Hochelaga, Québec, QC G1V 0A6, Canada; Chair of Educational Leadership (CLE) in Primary Production and Processing of Edible Insects (CLEIC https://cleic.fsaa.ulaval.ca/en/), Canada; Centre de recherche en infectiologie porcine et avicole (CRIPA), 3200 Sicotte, bureau 3115-4, Saint-Hyacinthe, QC J2S 2M2, Canada.
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Shetty BD, Pandey PK, Mai K. Microbial diversity in dairy manure environment under liquid-solid separation systems. ENVIRONMENTAL TECHNOLOGY 2024:1-17. [PMID: 38310325 DOI: 10.1080/09593330.2024.2309481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Accepted: 01/10/2024] [Indexed: 02/05/2024]
Abstract
In dairy manure, a wide array of microorganisms, including many pathogens, survive and grow under suitable conditions. This microbial community offers a tremendous opportunity for studying animal health, the transport of microbes into the soil, air, and water, and consequential impacts on public health. The aim of this study was to assess the impacts of manure management practices on the microbial community of manure. The key novelty of this work is to identify the impacts of various stages of manure management on microbes living in dairy manure. In general, the majority of dairy farms in California use a flush system to manage dairy manure, which involves liquid-solid separations. To separate liquid and solid in manure, Multi-stage Alternate Dairy Effluent Management Systems (ADEMS) that use mechanical separation systems (MSS) or weeping wall separation systems (WWSS) are used. Thus, this study was conducted to understand how these manure management systems affect the microbial community. We studied the microbial communities in the WWSS and MSS separation systems, as well as in the four stages of the ADEMS. The 16S rRNA gene from the extracted genomic DNA of dairy manure was amplified using the NovoSeq Illumina next-generation sequencing platform. The sequencing data were used to perform the analysis of similarity (ANOSIM) and multi-response permutation procedure (MRRP) statistical tests, and the results showed that microbial communities among WWSS and MSS were significantly different (p < 0.05). These findings have significant practical implications for the design and implementation of manure management practices in dairy farms.
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Affiliation(s)
- B Dharmaveer Shetty
- Department of Population Health and Reproduction, School of Veterinary Medicine, University of California-Davis, Davis, CA, USA
| | - Pramod K Pandey
- Department of Population Health and Reproduction, School of Veterinary Medicine, University of California-Davis, Davis, CA, USA
| | - Kelly Mai
- Department of Population Health and Reproduction, School of Veterinary Medicine, University of California-Davis, Davis, CA, USA
- Mechanisms of Disease and Translational Research, School of Medical Science, University of New South Wales, Sydney, Australia
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Sharma V, Kaur P, Aulakh RS, Sharma R, Verma R, Singh BB. Is Brucella excreted in cattle faeces? - Evidence from Punjab, India. Comp Immunol Microbiol Infect Dis 2024; 104:102099. [PMID: 38007989 DOI: 10.1016/j.cimid.2023.102099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Accepted: 11/13/2023] [Indexed: 11/28/2023]
Abstract
Brucellosis is a neglected zoonosis that affects animals and people in much of the underdeveloped world. The disease is endemic in cattle in Punjab, India and controlling it is a public health challenge. Dairy farmers and farm labour commonly handle cattle faeces with bare hands and personal protective equipments are not used. No studies have been conducted about the shedding of Brucella species in faeces of sero positive cattle in the state. This study aimed to isolate and identify the Brucella species from faeces of sero positive cattle in Punjab, India. Faecal samples were collected from 350 Brucella sero positive cattle in Ludhiana district of Punjab, India. Isolation was performed using a pre-enriched Brucella selective broth medium as well as Brucella selective medium agar plates containing horse serum and Brucella selective supplements. Isolates were identified using Gram staining technique and rapid slide agglutination test, and then confirmed by using bcsp31 and 16s rRNA genus specific PCR. Isolates were further identified up to species level by using Bruce-Ladder multiplex PCR. Fourteen Brucella species were isolated, all of which showed coccobacilli on gram staining, positive rapid slide agglutination test and amplification of bcsp31 and 16s rRNA genes. Of the 14 isolates, 11 were identified as Brucella abortus and 3 were identified as Brucella melitensis. The study demonstrates that animal faeces could pose a potential risk for animal and human health and faeces of seropositive cattle must be handled with care.
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Affiliation(s)
- V Sharma
- Centre for One Health, Guru Angad Dev Veterinary and Animal Sciences University, Ludhiana, Punjab 141004, India
| | - P Kaur
- Department of Veterinary Microbiology, Guru Angad Dev Veterinary and Animal Sciences University, Ludhiana, Punjab 141004, India
| | - R S Aulakh
- Centre for One Health, Guru Angad Dev Veterinary and Animal Sciences University, Ludhiana, Punjab 141004, India
| | - R Sharma
- Centre for One Health, Guru Angad Dev Veterinary and Animal Sciences University, Ludhiana, Punjab 141004, India
| | - R Verma
- Animal Disease Research Centre, Guru Angad Dev Veterinary and Animal Sciences University, Ludhiana, Punjab 141004, India
| | - B B Singh
- Centre for One Health, Guru Angad Dev Veterinary and Animal Sciences University, Ludhiana, Punjab 141004, India.
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Oxendine A, Walsh AA, Young T, Dixon B, Hoke A, Rogers EE, Lee MD, Maurer JJ. Conditions Necessary for the Transfer of Antimicrobial Resistance in Poultry Litter. Antibiotics (Basel) 2023; 12:1006. [PMID: 37370325 DOI: 10.3390/antibiotics12061006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Revised: 05/23/2023] [Accepted: 06/01/2023] [Indexed: 06/29/2023] Open
Abstract
Animal manures contain a large and diverse reservoir of antimicrobial resistance (AMR) genes that could potentially spillover into the general population through transfer of AMR to antibiotic-susceptible pathogens. The ability of poultry litter microbiota to transmit AMR was examined in this study. Abundance of phenotypic AMR was assessed for litter microbiota to the antibiotics: ampicillin (Ap; 25 μg/mL), chloramphenicol (Cm; 25 μg/mL), streptomycin (Sm; 100 μg/mL), and tetracycline (Tc; 25 μg/mL). qPCR was used to estimate gene load of streptomycin-resistance and sulfonamide-resistance genes aadA1 and sul1, respectively, in the poultry litter community. AMR gene load was determined relative to total bacterial abundance using 16S rRNA qPCR. Poultry litter contained 108 CFU/g, with Gram-negative enterics representing a minor population (<104 CFU/g). There was high abundance of resistance to Sm (106 to 107 CFU/g) and Tc (106 to 107 CFU/g) and a sizeable antimicrobial-resistance gene load in regards to gene copies per bacterial genome (aadA1: 0.0001-0.0060 and sul1: 0.0355-0.2455). While plasmid transfer was observed from Escherichia coli R100, as an F-plasmid donor control, to the Salmonella recipient in vitro, no AMR Salmonella were detected in a poultry litter microcosm with the inclusion of E. coli R100. Confirmatory experiments showed that isolated poultry litter bacteria were not interfering with plasmid transfer in filter matings. As no R100 transfer was observed at 25 °C, conjugative plasmid pRSA was chosen for its high plasmid transfer frequency (10-4 to 10-5) at 25 °C. While E. coli strain background influenced the persistence of pRSA in poultry litter, no plasmid transfer to Salmonella was ever observed. Although poultry litter microbiota contains a significant AMR gene load, potential to transmit resistance is low under conditions commonly used to assess plasmid conjugation.
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Affiliation(s)
- Aaron Oxendine
- School of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA 24060, USA
| | - Allison A Walsh
- School of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA 24060, USA
| | - Tamesha Young
- School of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA 24060, USA
| | - Brandan Dixon
- School of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA 24060, USA
| | - Alexa Hoke
- School of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA 24060, USA
| | - Eda Erdogan Rogers
- Department of Biomedical Science and Pathobiology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24060, USA
| | - Margie D Lee
- Department of Biomedical Science and Pathobiology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24060, USA
| | - John J Maurer
- School of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA 24060, USA
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Pires AFA, Ramos TDM, Baron JN, Millner PD, Pagliari PH, Hutchinson M, Haghani V, Aminabadi P, Kenney A, Hashem F, Martínez-López B, Bihn EA, Clements DP, Shade JB, Sciligo AR, Jay-Russell MT. Risk factors associated with the prevalence of Shiga-toxin-producing Escherichia coli in manured soils on certified organic farms in four regions of the USA. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2023. [DOI: 10.3389/fsufs.2023.1125996] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/28/2023] Open
Abstract
IntroductionBiological soil amendments of animal origin (BSAAO), including untreated amendments are often used to improve soil fertility and are particularly important in organic agriculture. However, application of untreated manure on cropland can potentially introduce foodborne pathogens into the soil and onto produce. Certified organic farms follow the USDA National Organic Program (NOP) standards that stipulate a 90- or 120-day interval between application of untreated manure and crop harvest, depending on whether the edible portion of the crop directly contacts the soil. This time-interval metric is based on environmental factors and does not consider a multitude of factors that might affect the survival of the main pathogens of concern. The objective of this study was to assess predictors for the prevalence of Shiga-toxin-producing Escherichia coli (non-O157 STEC) in soils amended with untreated manure on USDA-NOP certified farms.MethodsA longitudinal, multi-regional study was conducted on 19 farms in four USA regions for two growing seasons (2017–2018). Untreated manure (cattle, horse, and poultry), soil, and irrigation water samples were collected and enrichment cultured for non-O157 STEC. Mixed effects logistic regression models were used to analyze the predictors of non-O157 STEC in the soil up to 180 days post-manure application.Results and discussionResults show that farm management practices (previous use with livestock, presence of animal feces on the field, season of manure application) and soil characteristics (presence of generic E. coli in the soil, soil moisture, sodium) increased the odds of STEC-positive soil samples. Manure application method and snowfall decreased the odds of detecting STEC in the soil. Time-variant predictors (year and sampling day) affected the presence of STEC. This study shows that a single metric, such as the time interval between application of untreated manure and crop harvest, may not be sufficient to reduce the food safety risks from untreated manure, and additional environmental and farm-management practices should also be considered. These findings are of particular importance because they provide multi-regional baseline data relating to current NOP wait-time standards. They can therefore contribute to the development of strategies to reduce pathogen persistence that may contribute to contamination of fresh produce typically eaten raw from NOP-certified farms using untreated manure.
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Antimicrobial Susceptibility Profile of Pathogenic and Commensal Bacteria Recovered from Cattle and Goat Farms. Antibiotics (Basel) 2023; 12:antibiotics12020420. [PMID: 36830330 PMCID: PMC9952079 DOI: 10.3390/antibiotics12020420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2023] [Revised: 02/05/2023] [Accepted: 02/08/2023] [Indexed: 02/22/2023] Open
Abstract
The use of antibiotics in food animals results to antimicrobial resistant bacteria that complicates the ability to treat infections. The purpose of this study was to investigate the prevalence of pathogenic and commensal bacteria in soil, water, manure, and milk from cattle and goat farms. A total of 285 environmental and 81 milk samples were analyzed for Enterobacteriaceae by using biochemical and PCR techniques. Susceptibility to antibiotics was determined by the Kirby-Bauer disk diffusion technique. A total of 15 different Enterobacteriaceae species were identified from goat and cattle farms. Manure had significantly higher (p < 0.05) Enterobacteriaceae (52.0%) than soil (37.2%), trough water (5.4%), and runoff water (5.4%). There was a significant difference (p < 0.05) in Enterobacteriaceae in goat milk (53.9%) and cow milk (46.2%). Enterobacteriaceae from environment showed 100% resistance to novobiocin, erythromycin, and vancomycin E. coli O157:H7, Salmonella spp., Enterococcus spp., and Listeria monocytogenes displayed three, five, six, and ten. AMR patterns, respectively. NOV-TET-ERY-VAN was the most common phenotype observed in all isolates. Our study suggest that cattle and goat farms are reservoirs of multidrug-resistant bacteria. Food animal producers should be informed on the prudent use of antimicrobials, good agricultural practices, and biosecurity measures.
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Shetty BD, Amaly N, Weimer BC, Pandey P. Predicting Escherichia coli levels in manure using machine learning in weeping wall and mechanical liquid solid separation systems. Front Artif Intell 2023; 5:921924. [PMID: 36686852 PMCID: PMC9848401 DOI: 10.3389/frai.2022.921924] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Accepted: 11/21/2022] [Indexed: 01/06/2023] Open
Abstract
An increased understanding of the interaction between manure management and public and environmental health has led to the development of Alternative Dairy Effluent Management Strategies (ADEMS). The efficiency of such ADEMS can be increased using mechanical solid-liquid-separator (SLS) or gravitational Weeping-Wall (WW) solid separation systems. In this research, using pilot study data from 96 samples, the chemical, physical, biological, seasonal, and structural parameters between SLS and WW of ADEM systems were compared. Parameters including sodium, potassium, total salts, volatile solids, pH, and E. coli levels were significantly different between the SLS and WW of ADEMS. The separated solid fraction of the dairy effluents had the lowest E. coli levels, which could have beneficial downstream implications in terms of microbial pollution control. To predict effluent quality and microbial pollution risk, we used Escherichia coli as the indicator organism, and a versatile machine learning, ensemble, stacked, super-learner model called E-C-MAN (Escherichia coli-Manure) was developed. Using pilot data, the E-C-MAN model was trained, and the trained model was validated with the test dataset. These results demonstrate that the heuristic E-C-MAN ensemble model can provide a pilot framework toward predicting Escherichia coli levels in manure treated by SLS or WW systems.
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Affiliation(s)
- B. Dharmaveer Shetty
- Department of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, Davis, CA, United States
| | - Noha Amaly
- Department of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, Davis, CA, United States,Polymeric Materials Research Department, Advanced Technology and New Materials Research Institute, City of Scientific Research and Technological Applications (SRTA-City), New Borg El-Arab City, Alexandria, Egypt
| | - Bart C. Weimer
- Department of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, Davis, CA, United States
| | - Pramod Pandey
- Department of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, Davis, CA, United States,*Correspondence: Pramod Pandey
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Iqbal MS, Islam M, Hassan M, Bilal H, Shah IA, Ourania T. Modeling the fecal contamination (fecal coliform bacteria) in transboundary waters using the scenario matrix approach: a case study of Sutlej River, Pakistan. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:79555-79566. [PMID: 35713836 DOI: 10.1007/s11356-022-21294-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2021] [Accepted: 06/01/2022] [Indexed: 06/15/2023]
Abstract
Surface water quality is among the significant challenges in the Sutlej River basin, passing through Pakistan's most densely populated province. Currently, the overall surface water quality is grossly polluted, mainly due to the direct discharge of wastewater from the urban areas to the Sutlej River directly or through stream networks. Escherichia coli concentrations vary under extreme weather events like floods and droughts and socioeconomic circumstances like urbanization, population growth, and treatment options. This paper assesses the future E. coli load and concentrations using the Soil and Water Assessment Tool (SWAT) along with scenarios based on Shared Socioeconomic Pathways (SSPs) and Representative Concentration Pathways (RCPs) developed by the Intergovernmental Panel on Climate Change (IPCC). E. coli concentrations according to a more polluted scenario disclose a near and mid future increase by 108% and 173%, and far future increases up to 251% compared to the reference period (baseline) concentrations. The E. coli concentration is reduced by - 54%, - 68%, and - 81% for all the projected time steps compared to the baseline concentrations. While highly improved sewerage and manure management options are adapted, the concentration is further reduced by - 96%, - 101%, and - 105%, respectively, compared to the baseline. Our modeling and scenario matrix study shows that reducing microbiological concentrations in the surface water is possible. Still, it requires rigorous sanitation and treatment options, and socioeconomic variables play an essential role besides climate change to determine the microbiological concentration of water resources and be included in future studies whenever water quality and health risks are considered.
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Affiliation(s)
| | - Majedul Islam
- Planning Division, Ministry of Planning, Government of Bangladesh, Dhaka, Bangladesh
| | - Mujtaba Hassan
- Department of Space Science, Institute of Space Technology, Islamabad, Pakistan
| | - Hazrat Bilal
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, School of Environment, Beijing Normal University, No. 19, Xinjiekouwai Street, Beijing, 100875, China
| | - Izaz Ali Shah
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, School of Environment, Beijing Normal University, No. 19, Xinjiekouwai Street, Beijing, 100875, China
| | - Tzoraki Ourania
- Department of Marine Sciences, University of the Aegean, Mytilene, Greece
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Vassileva M, Mocali S, Canfora L, Malusá E, García del Moral LF, Martos V, Flor-Peregrin E, Vassilev N. Safety Level of Microorganism-Bearing Products Applied in Soil-Plant Systems. FRONTIERS IN PLANT SCIENCE 2022; 13:862875. [PMID: 35574066 PMCID: PMC9096872 DOI: 10.3389/fpls.2022.862875] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Accepted: 03/18/2022] [Indexed: 05/17/2023]
Abstract
The indiscriminate use of chemical fertilizers adversely affects ecological health and soil microbiota provoking loss of soil fertility and greater pathogen and pest presence in soil-plant systems, which further reduce the quality of food and human health. Therefore, the sustainability, circular economy, environmental safety of agricultural production, and health concerns made possible the practical realization of eco-friendly biotechnological approaches like organic matter amendments, biofertilizers, biopesticides, and reuse of agro-industrial wastes by applying novel and traditional methods and processes. However, the advancement in the field of Biotechnology/Agriculture is related to the safety of these microorganism-bearing products. While the existing regulations in this field are well-known and are applied in the preparation and application of waste organic matter and microbial inoculants, more attention should be paid to gene transfer, antibiotic resistance, contamination of the workers and environment in farms and biotech-plants, and microbiome changes. These risks should be carefully assessed, and new analytical tools and regulations should be applied to ensure safe and high-quality food and a healthy environment for people working in the field of bio-based soil amendments.
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Affiliation(s)
- Maria Vassileva
- Department of Chemical Engineering, Institute of Biotechnology, University of Granada, Granada, Spain
| | - Stefano Mocali
- Council for Agricultural Research and Economics, Research Centre for Agriculture and Environment, Rome, Italy
| | - Loredana Canfora
- Council for Agricultural Research and Economics, Research Centre for Agriculture and Environment, Rome, Italy
| | - Eligio Malusá
- Research Institute of Horticulture, Skierniewice, Poland
- Council for Agricultural Research and Economics, Center for Viticulture and Enology, Conegliano, Italy
| | | | - Vanessa Martos
- Department of Plant Physiology, University of Granada, Granada, Spain
| | - Elena Flor-Peregrin
- Department of Chemical Engineering, Institute of Biotechnology, University of Granada, Granada, Spain
| | - Nikolay Vassilev
- Department of Chemical Engineering, Institute of Biotechnology, University of Granada, Granada, Spain
- Institute of Biotechnology, University of Granada, Granada, Spain
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12
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Idland L, Granquist EG, Aspholm M, Lindbäck T. The prevalence of Campylobacter spp., Listeria monocytogenes and Shiga toxin-producing Escherichia coli in Norwegian dairy cattle farms; a comparison between free stall and tie stall housing systems. J Appl Microbiol 2022; 132:3959-3972. [PMID: 35244319 PMCID: PMC9315008 DOI: 10.1111/jam.15512] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Revised: 02/25/2022] [Accepted: 02/28/2022] [Indexed: 11/27/2022]
Abstract
Aims This study explored how dairy farm operating systems with free‐stall or tie‐stall housing and cow hygiene score influence the occurrence of zoonotic bacteria in raw milk. Methods and Results Samples from bulk tank milk (BTM), milk filters, faeces, feed, teats and teat milk were collected from 11 farms with loose housing and seven farms with tie‐stall housing every second month over a period of 11 months and analysed for the presence of STEC by culturing combined with polymerase chain reaction and for Campylobacter spp. and L. monocytogenes by culturing only. Campylobacter spp., L. monocytogenes and STEC were present in samples from the farm environment and were also detected in 4%, 13% and 7% of the milk filters, respectively, and in 3%, 0% and 1% of BTM samples. Four STEC isolates carried the eae gene, which is linked to the capacity to cause severe human disease. L. monocytogenes were detected more frequently in loose housing herds compared with tie‐stalled herds in faeces (p = 0.02) and feed (p = 0.03), and Campylobacter spp. were detected more frequently in loose housing herds in faeces (p < 0.01) and teat swabs (p = 0.03). An association between cow hygiene score and detection of Campylobacter spp. in teat milk was observed (p = 0.03). Conclusion Since some samples collected from loose housing systems revealed a significantly higher (p < 0.05) content of L. monocytogenes and Campylobacter spp. than samples collected from tie‐stalled herds, the current study suggests that the type of housing system may influence the food safety of raw milk. Significance and Impact of the Study This study highlights that zoonotic bacteria can be present in raw milk independent of hygienic conditions at the farm and what housing system is used. Altogether, this study provides important knowledge for evaluating the risk of drinking unpasteurized milk.
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Affiliation(s)
- Lene Idland
- Department of Paraclinical Sciences, Faculty of Veterinary Medicine, Norwegian University of Life Sciences, Ås, Norway
| | - Erik G Granquist
- Department of Production Animal Clinical Sciences, Faculty of Veterinary Medicine, Norwegian University of Life Sciences, Ås, Norway
| | - Marina Aspholm
- Department of Paraclinical Sciences, Faculty of Veterinary Medicine, Norwegian University of Life Sciences, Ås, Norway
| | - Toril Lindbäck
- Department of Paraclinical Sciences, Faculty of Veterinary Medicine, Norwegian University of Life Sciences, Ås, Norway
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13
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Chong CC, Cheng YW, Ishak S, Lam MK, Lim JW, Tan IS, Show PL, Lee KT. Anaerobic digestate as a low-cost nutrient source for sustainable microalgae cultivation: A way forward through waste valorization approach. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 803:150070. [PMID: 34525689 DOI: 10.1016/j.scitotenv.2021.150070] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Revised: 08/14/2021] [Accepted: 08/28/2021] [Indexed: 06/13/2023]
Abstract
To suffice the escalating global energy demand, microalgae are deemed as high potential surrogate feedstocks for liquid fuels. The major encumbrance for the commercialization of microalgae cultivation is due to the high costs of nutrients such as carbon, phosphorous, and nitrogen. Meanwhile, the organic-rich anaerobic digestate which is difficult to be purified by conventional techniques is appropriate to be used as a low-cost nutrient source for the economic viability and sustainability of microalgae production. This option is also beneficial in terms of reutilize the organic fraction of solid waste instead of discarded as zero-value waste. Anaerobic digestate is the side product of biogas production during anaerobic digestion process, where optimum nutrients are needed to satisfy the physiological needs to grow microalgae. Besides, the turbidity, competing biological contaminants, ammonia and metal toxicity of the digestate are also potentially contributing to the inhibition of microalgae growth. Thus, this review is aimed to explicate the feasibility of utilizing the anaerobic digestate to cultivate microalgae by evaluating their potential challenges and solutions. The proposed potential solutions (digestate dilution and pre-treatment, microalgae strain selection, extra organics addition, nitrification and desulfurization) corresponding to the state-of-the-art challenges are applicable as future directions of the research.
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Affiliation(s)
- Chi Cheng Chong
- Department of Chemical Engineering, School of Engineering and Computing, Manipal International University, 71800 Putra Nilai, Negeri Sembilan, Malaysia
| | - Yoke Wang Cheng
- Department of Chemical Engineering, School of Engineering and Computing, Manipal International University, 71800 Putra Nilai, Negeri Sembilan, Malaysia
| | - Syukriyah Ishak
- Chemical Engineering Department, Universiti Teknologi PETRONAS, 32610 Seri Iskandar, Perak, Malaysia; HICoE-Centre for Biofuel and Biochemical Research (CBBR), Institute for Self-sustainable Building, 32610 Seri Iskandar, Perak, Malaysia
| | - Man Kee Lam
- Chemical Engineering Department, Universiti Teknologi PETRONAS, 32610 Seri Iskandar, Perak, Malaysia; HICoE-Centre for Biofuel and Biochemical Research (CBBR), Institute for Self-sustainable Building, 32610 Seri Iskandar, Perak, Malaysia.
| | - Jun Wei Lim
- HICoE-Centre for Biofuel and Biochemical Research (CBBR), Institute for Self-sustainable Building, 32610 Seri Iskandar, Perak, Malaysia; Department of Fundamental and Applied Sciences, Universiti Teknologi PETRONAS, 32610 Seri Iskandar, Perak, Malaysia
| | - Inn Shi Tan
- Department of Chemical Engineering, Curtin University, Sarawak Campus CDT 250, 98009 Miri, Sarawak, Malaysia
| | - Pau Loke Show
- Department of Chemical and Environmental Engineering, Faculty of Science and Engineering, University of Nottingham Malaysia, Jalan Broga, Semenyih 43500, Selangor, Malaysia
| | - Keat Teong Lee
- School of Chemical Engineering, Universiti Sains Malaysia, Engineering Campus, Seri Ampangan, 14300 Nibong Tebal, Pulau Pinang, Malaysia
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Ramos TDM, Jay-Russell MT, Millner PD, Baron JN, Stover J, Pagliari P, Hutchinson M, Lilley J, Rowley N, Haghani V, Aminabadi P, Kenney A, Hashem F, Martínez-López B, Bihn EA, Clements DP, Shade JB, Sciligo AR, Pires AFA. Survival and Persistence of Foodborne Pathogens in Manure-Amended Soils and Prevalence on Fresh Produce in Certified Organic Farms: A Multi-Regional Baseline Analysis. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2021. [DOI: 10.3389/fsufs.2021.674767] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Biological soil amendments of animal origin (BSAAOs), including untreated (e.g., raw or aged manure, or incompletely composted manure) and treated animal products (e.g., compost), are used for crop production and as part of soil health management. Application of BSAAO's must be done cautiously, as raw manure commonly contains enteric foodborne pathogens that can potentially contaminate edible produce that may be consumed without cooking. USDA National Organic Program (NOP) certified production systems follow the 90-or 120-day interval standards between applications of untreated BSAAOs and crop harvest, depending on whether the edible portions of the crops are in indirect or direct contact with the soil, respectively. This study was conducted to evaluate the survival of four foodborne pathogens in soils amended with BSAAOs and to examine the potential for bacterial transfer to fresh produce harvested from USDA NOP certified organic farms (19) from four states. Only 0.4% (2/527) of produce samples were positive for L. monocytogenes. Among the untreated manure and compost samples, 18.0% (42/233) were positive for at least one of the tested and culturable bacterial foodborne pathogens. The prevalence of non-O157 STEC and Salmonella in untreated manure was substantially > that of E. coli O157:H7 and L. monocytogenes. Of the 2,461 soil samples analyzed in this study, 12.9% (318) were positive for at least one pathogen. In soil amended with untreated manure, the prevalence of non-O157 STEC [7.7% (190) and L. monocytogenes (5.0% (122), was > that of Salmonella (1.1% (26)] or E. coli O157 [0.04% (1)]. Foodborne pathogen prevalence in the soil peaked after manure application and decreased significantly 30 days post-application (dpa). However, non-O157 STEC and L. monocytogenes were recovered from soil samples after 90 and 120 dpa. Results indicate that produce contamination by tested foodborne pathogens was infrequent, but these data should not be generalized outside of the specific wait-time regulations for organic crop production and the farms studied. Moreover, other sources of contamination, e.g., irrigation, wildlife, environmental conditions, cropping and management practices, should be considered. This study also provides multi-regional baseline data relating to current NOP application intervals and development of potential risk mitigation strategies to reduce pathogen persistence in soils amended with BSAAOs. These findings contribute to filling critical data gaps concerning occurrence of fecal pathogens in NOP-certified farming systems used for production of fresh produce in different US regions.
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15
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Variation in Microbial Exposure at the Human-Animal Interface and the Implications for Microbiome-Mediated Health Outcome. mSystems 2021; 6:e0056721. [PMID: 34342530 PMCID: PMC8407385 DOI: 10.1128/msystems.00567-21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Abstract
The human gut microbiome varies between populations, largely reflecting ecological differences. One ecological variable that is rarely considered but may contribute substantially to microbiome variation is the multifaceted nature of human-animal interfaces. We present the hypothesis that different interactions with animals contribute to shaping the human microbiome globally. We utilize a One Health framework to explore how changes in microbial exposure from human-animal interfaces shape the microbiome and, in turn, contribute to differential human health across populations, focusing on commensal and pathogen exposure, changes in colonization resistance and immune system training, and the potential for other functional shifts. Although human-animal interfaces are known to underlie human health and particularly infectious disease disparities, since their impact on the human microbiome remains woefully understudied, we propose foci for future research. We believe it will be crucial to understand this critical aspect of biology and its impacts on human health around the globe.
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16
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Microbial contamination of the air in livestock buildings as a threat to human and animal health – a review. ANNALS OF ANIMAL SCIENCE 2021. [DOI: 10.2478/aoas-2020-0080] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Abstract
Livestock buildings are often contaminated with bacterial and fungal microflora. Animals living in the buildings, especially their excreta and secretions and their feed, can be a source of microorganisms, including pathogens. Significant microbial contamination occurs in pig houses, poultry houses and cowsheds. The microbes most frequently isolated from the air of these buildings are bacteria of the genera Streptococcus, Staphylococcus, Bacillus, and Clostridium and of the family Enterobacteriaceae. Among fungi, the most common are Aspergillus, Trichoderma, Penicillium, Cladosporium and Alternaria. Microbes present in livestock buildings often pose a hazard to workers, in whom they can cause infectious and allergic diseases, especially respiratory disease. Bacterial endotoxins may also pose a threat to humans and animals. For this reason it is important to carry out microbiological monitoring and preventive measures on livestock farms and to maintain appropriate environmental conditions. This will reduce microbiological contamination of livestock buildings and improve both workers’ health and animal welfare.
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17
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Liu G, Mamode Ally N, Dooly DD, Li Y, Boodhoo K, Neetoo H. A study on the effectiveness of a defined microbial consortium to enhance the microbiological safety of cattle manure. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2021; 101:2614-2620. [PMID: 33063345 DOI: 10.1002/jsfa.10886] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Revised: 10/07/2020] [Accepted: 10/15/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND Animal manure frequently harbors pathogenic microorganisms such as Salmonella spp. and diarrheagenic Escherichia coli. A defined microbial consortium such as effective microorganisms (EM) can potentially be used as a biocontrol against manure-borne human pathogens such as Salmonella and pathogenic E. coli. The objective of the study was to investigate the efficacy of EM to decontaminate cattle manure. RESULTS EM was first characterized by enumeration and identification of lactic acid bacteria (LAB), yeasts, actinomycetes and phototrophic bacteria (PB). The population density of LAB, yeasts, actinomycetes and presumptive PB was 6.9, 5.2, 5.9 and 3.9 log CFU g-1 respectively. LAB and yeast isolates were molecularly confirmed as Lactobacillus plantarum and L. casei (LAB) and Yarrowia lipolytica, Rhodotorula mucilaginosa and Picha manshurica (yeasts) respectively. Culture-independent molecular analysis revealed the presence of additional species including L. parabuchneri and Enterococcus faecium (LAB) and bacterial spore-formers Bacillus cereus and Clostridium spp. Application of EM to fresh cattle manure, inoculated with ~5-6 log CFU g-1 of antibiotic-resistant strain of indicator organism E. coli ATCC 25922, resulted in complete elimination of the organism in 20 days, while survivors were still detected in the untreated counterpart. CONCLUSION EM can potentially be used for sustainable pathogen control in cattle manure for enhanced food safety and environmental health. © 2020 Society of Chemical Industry.
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Affiliation(s)
- Guoxia Liu
- CAS Key Laboratory of Microbial Physiological and Metabolic Engineering, State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | | | | | - Yin Li
- CAS Key Laboratory of Microbial Physiological and Metabolic Engineering, State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | | | - Hudaa Neetoo
- Faculty of Agriculture, University of Mauritius, Reduit, Mauritius
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18
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Szott V, Friese A. Emission Sources of Campylobacter from Agricultural Farms, Impact on Environmental Contamination and Intervention Strategies. Curr Top Microbiol Immunol 2021; 431:103-125. [PMID: 33620650 DOI: 10.1007/978-3-030-65481-8_5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/24/2023]
Abstract
Although extensive research has been carried out to describe the transmission pathways of Campylobacter entering livestock farms, the role of livestock farms as source of Campylobacter contamination of the environment is still poorly investigated. It is assumed that Campylobacter-positive livestock farms contribute to an environmental contamination, depending on the animal species on the farm, their Campylobacter status, the housing system, manure management as well as their general farm hygienic and biosecurity management. Different emission sources, like manure, air, water, insects and rodents as well as personnel, including equipment and vehicles, contribute to Campylobacter emission into the environment. Even though Campylobacter are rather fastidious bacteria, they are able to survive in the environment for even a longer period of time, when environmental conditions enable survival in specific niches. We conclude that a significant reduction of Campylobacter emission in the environment can be successfully achieved if various intervention strategies, depending on the farm type, are applied simultaneously, including proper general and personal hygiene, establishing of hygienic barriers, insect controls, manure management and hygienization of stables, barns and exhaust air.
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Affiliation(s)
- Vanessa Szott
- Institute for Animal Hygiene and Environmental Health, Free University Berlin, Centre for Infection Medicine, Robert-von-Ostertag-Str. 7-13, 14163, Berlin, Germany
| | - Anika Friese
- Institute for Animal Hygiene and Environmental Health, Free University Berlin, Centre for Infection Medicine, Robert-von-Ostertag-Str. 7-13, 14163, Berlin, Germany.
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19
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Sheng L, Wang L. The microbial safety of fish and fish products: Recent advances in understanding its significance, contamination sources, and control strategies. Compr Rev Food Sci Food Saf 2020; 20:738-786. [PMID: 33325100 DOI: 10.1111/1541-4337.12671] [Citation(s) in RCA: 65] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Revised: 09/22/2020] [Accepted: 10/12/2020] [Indexed: 12/18/2022]
Abstract
Microorganisms play a crucial and unique role in fish and fish product safety. The presence of human pathogens and the formation of histamine caused by spoilage bacteria make the control of both pathogenic and spoilage microorganisms critical for fish product safety. To provide a comprehensive and updated overview of the involvement of microorganisms in fish and fish product safety, this paper reviewed outbreak and recall surveillance data obtained from government agencies from 1998 to 2018 and identified major safety concerns associated with both domestic and imported fish products. The review also summarized all available literature about the prevalence of major and emerging microbial safety concerns, including Salmonella spp., Listeria monocytogenes, and Aeromonas hydrophila, in different fish and fish products and the survival of these pathogens under different storage conditions. The prevalence of antibiotic-resistant bacteria (ARB) and antibiotic-resistant genes (ARGs), two emerging food safety concerns, is also reviewed. Pathogenic and spoilage microorganisms as well as ARB and ARGs can be introduced into fish and fish products in both preharvest and postharvest stages. Many novel intervention strategies have been proposed and tested for the control of different microorganisms on fish and fish products. One key question that needs to be considered when developing and implementing novel control measures is how to ensure that the measures are cost and environment friendly as well as sustainable. Over the years, regulations have been established to provide guidance documents for good farming and processing practices. To be more prepared for the globalization of the food chain, harmonization of regulations is still needed.
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Affiliation(s)
- Lina Sheng
- Department of Food Science and Technology, University of California, Davis, Davis, California, USA
| | - Luxin Wang
- Department of Food Science and Technology, University of California, Davis, Davis, California, USA
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20
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Petersen HH, Dalsgaard A, Vinneras B, Jensen LS, Le TTA, Petersen MA, Enemark HL, Forslund A. Inactivation of Cryptosporidium parvum oocysts and faecal indicator bacteria in cattle slurry by addition of ammonia. J Appl Microbiol 2020; 130:1745-1757. [PMID: 33012074 DOI: 10.1111/jam.14881] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2019] [Revised: 08/27/2020] [Accepted: 09/29/2020] [Indexed: 11/30/2022]
Abstract
AIMS To determine inactivation of Cryptosporidium parvum oocysts and reduction of Escherichia coli and enterococci in cattle slurry added aqueous ammonia. METHODS AND RESULTS Escherichia coli, enterococci and nonviable C. parvum oocysts (DAPI+PI+) were enumerated every second day for 2 weeks in cattle slurry amended with 60 mmol l-1 aq. ammonia and compared with untreated slurry at three temperatures. Regardless of temperature, the proportion of nonviable C. parvum oocysts increased significantly faster over time in slurry with added ammonia than raw slurry (P = 0·021) corresponding to 62·0% higher inactivation (P = 0·001) at day 14. Additionally, 91·8% fewer E. coli and 27·3% fewer enterococci were observed in slurry added ammonia at day 14 compared to raw slurry. CONCLUSION The addition of aqueous ammonia to raw slurry significantly reduced the viability of C. parvum oocysts and numbers of bacterial indicators. Hence, ammonia is usable at lower pathogen concentrations in slurry before application to agricultural land. SIGNIFICANCE AND IMPACT OF THE STUDY Livestock waste is a valuable source of plant nutrients and organic matter, but may contain high concentrations of pathogens like E. coli and Cryptosporidium sp. that can be spread in the environment, and cause disease outbreaks. However, die-off rates of pathogens in organic waste can increase following increasing ammonia concentrations.
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Affiliation(s)
- H H Petersen
- National Veterinary Institute, Technical University of Denmark, Kgs.Lyngby, Denmark.,Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - A Dalsgaard
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - B Vinneras
- Department of Energy and Technology, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - L S Jensen
- Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, Frederiksberg, Denmark
| | - T T A Le
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - M A Petersen
- Department for Palliative Medicine, The Research Unit, Bispebjerg Hospital, Copenhagen NV, Denmark
| | - H L Enemark
- National Veterinary Institute, Technical University of Denmark, Kgs.Lyngby, Denmark.,Department of Animal Health and Food Safety, Norwegian Veterinary Institute, PO Box 750 Sentrum, Oslo, NO-0106, Norway
| | - A Forslund
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark
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21
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Awasthi MK, Liu T, Awasthi SK, Duan Y, Pandey A, Zhang Z. Manure pretreatments with black soldier fly Hermetia illucens L. (Diptera: Stratiomyidae): A study to reduce pathogen content. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 737:139842. [PMID: 32526587 DOI: 10.1016/j.scitotenv.2020.139842] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2020] [Revised: 05/15/2020] [Accepted: 05/28/2020] [Indexed: 06/11/2023]
Abstract
This study aim was to investigate the influence of black soldier fly larvae (BSFL) Hermetia illucens L. (Diptera: Stratiomyidae) on pathogenic bacteria (PB) survival in the chicken manure (CM), pig manure (PM), cow manure (COM) and sewage sludge (SS) compost. Three kinds of manure [chicken (T2), pig (T4) and cow (T6)] and SS (T8) were inoculated with BSFL (1.2:7 ratio on fresh weight basis) and without BSFL (T1, T3, T5 and T7) was used as control and experiment lasted for 9 days. The results indicated that BSFL amendment 90-93% of PB abundances (RAs) was significantly mitigate in CM and COM (T2 and T6), and 86-88% in PM and SS compost. However, relatively greater abundance of PB was recorded in the T4 and T8 treatments. Most of the PB belong to Proteobacteria, Firmicutes, Actinobacteria and Bacteroidetes phylum and their community composition varied from phylum to species levels among the all treatments. The PB composition was significantly altered by BSFL amendment and also important role play to enhance in compost quality. Interestingly, Bacillus and Clostridium were significantly very less abundant present in BSFL applied treatments, but considerably higher population of these bacterial genus and its associated species were identifies from control or without BSFL applied treatments. Overall, without BSFL blended-all three kinds of manure-composts have comparatively greater PB abundance than with BSFL applied treatments, as the PB species Listeria_monocytogenes_FSL_R2-503, Staphylococcus_aureus_M0406, Bacillus_anthracis, Listeria_ivanovii, Staphylococcus_aureus_C0673, Salmonella Bacillus_cereus_VD115, Mycobacterium_tuberculosis_FJ05194 and Pseudomonas_aeruginosa has relatively greater RAs, followed by Bartonella_bacilliformis_Ver075; Bordetella_pertussis_2356847; Brucella_melitensis_ADMAS-G1; Klebsiella_pneumoniae_LCT-KP182 and Corynebacterium_jeikeium_K411 respectively. Thus, chicken manure composting with BSFL addition is efficient technology for the organic waste recycling and conversion of sanitized matured compost with significantly less abundance of pathogenic bacteria.
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Affiliation(s)
- Mukesh Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China.
| | - Tao Liu
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Sanjeev Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Yumin Duan
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Ashok Pandey
- Centre for Innovation and Translational Research, CSIR-Indian Institute of Toxicology Research, Lucknow 226 001, India; Frontier Research Lab, Yonsei University, Seoul, South Korea.
| | - Zengqiang Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, China.
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22
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van den Brom R, de Jong A, van Engelen E, Heuvelink A, Vellema P. Zoonotic risks of pathogens from sheep and their milk borne transmission. Small Rumin Res 2020; 189:106123. [PMID: 32427176 PMCID: PMC7227596 DOI: 10.1016/j.smallrumres.2020.106123] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Revised: 04/23/2020] [Accepted: 04/23/2020] [Indexed: 02/07/2023]
Abstract
Sheep were domesticated around 9000 BC in the Middle East, and since then milk from sheep gradually became very popular, not only for drinking but also for making cheeses and other dairy products. Nowadays, these dairy products are also important for people with an allergy to cow milk, and these products are an essential part of the local daily diet in regions of the world that are not suitable for cows and goats. Consumption of raw milk and raw milk products has a zoonotic risk, and with regard to sheep, the main pathogens associated with such dairy products are: Brucella melitensis, Campylobacter spp., Listeria spp., Salmonella spp., Shiga-toxin producing Escherichia coli, Staphylococcus aureus, tick borne encephalitis virus, and Toxoplasma gondii. Especially, young children, elderly people, pregnant women and immunocompromised (YOPI) persons, and those suffering from disease should be aware of the risk of consuming raw milk and raw milk products. This latter risk can be reduced by proper flock health management, prevention of contamination during milking, adequate milk processing, transport, and refrigerated storage. Only processes equaling pasteurization sufficiently reduce zoonotic risks from milk and milk products, but proper cooling is essential and recontamination must be prevented. Therefore, strict hygiene practices throughout the production process and supply chain especially for raw milk and raw dairy products, should be applied. Small scale production systems pose a greater risk compared to industrialized production systems because of a less protocolized and controlled production process. This manuscript describes zoonotic risks of pathogens from sheep and their milk borne transmission. Additionally, routes of contamination, possibilities for multiplication, and prevention measures thereof are described. We summarize some major human outbreaks caused by consumption of sheep milk and products made thereof, and finally discuss their implications.
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Affiliation(s)
- René van den Brom
- Royal GD, Department of Small Ruminant Health, Deventer, The Netherlands
| | - Aarieke de Jong
- Netherlands Food and Consumer Product Safety Authority, Office for Risk Assessment and Research (NVWA-BuRO), Utrecht, The Netherlands
| | - Erik van Engelen
- Royal GD, Department of Research and Development, Deventer, The Netherlands
| | - Annet Heuvelink
- Royal GD, Department of Research and Development, Deventer, The Netherlands
| | - Piet Vellema
- Royal GD, Department of Small Ruminant Health, Deventer, The Netherlands
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Manure-borne pathogens as an important source of water contamination: An update on the dynamics of pathogen survival/transport as well as practical risk mitigation strategies. Int J Hyg Environ Health 2020; 227:113524. [DOI: 10.1016/j.ijheh.2020.113524] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Revised: 03/15/2020] [Accepted: 04/02/2020] [Indexed: 12/16/2022]
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24
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Prevalence and Genetic Diversity of C. Jejuni Isolated from Broilers and their Environment Using flaA-RFLP Typing and MLST Analysis. ANNALS OF ANIMAL SCIENCE 2020. [DOI: 10.2478/aoas-2020-0008] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Abstract
Campylobacter is highly diverse genetically and also undergoes frequent intraspecific recombination. A major source of campylobacteriosis, which is transmitted to humans is found in poultry. The assessment of the genetic diversity among Campylobacter population is critical to our understanding of the epidemiology. The genetic diversity of Campylobacter jejuni isolates in broilers and their environment were investigated by flaA-restriction fragment length polymorphism (RFLP) and multilocus sequence typing (MLST). The study revealed that 92.3% of the examined broiler flocks were contaminated with Campylobacter spp. A total number of 35 different flaA types defined by flaA-RFLP were found in 448 C. jejuni isolates originated from broilers, litter, puddles, zones, anteroom and wild birds. The most dominant flaA type was XXV. MLST defined 20 sequence types (STs) belonging to 10 clonal complexes (CCs). Among all the STs 9 isolates (15%) were consigned to 2 different STs (ST-7413 and ST-4800), which could not be assigned. The most common CCs were ST-21 and ST-179. The ST-21 CC was common in broilers and environment (puddle water and concentric zones) and the ST-179 CC was specific to wild birds, but also was found in puddle water and concentric zones.
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Kintz E, Williams NJ, Jones N, van der Es M, Lake IR, O'Brien SJ, Hunter PR. Regional differences in presence of Shiga toxin-producing Escherichia coli virulence-associated genes in the environment in the North West and East Anglian regions of England. Lett Appl Microbiol 2020; 71:179-186. [PMID: 32333799 DOI: 10.1111/lam.13303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Revised: 04/15/2020] [Accepted: 04/16/2020] [Indexed: 11/30/2022]
Abstract
Shiga toxin-producing Escherichia coli is carried in the intestine of ruminant animals, and outbreaks have occurred after contact with ruminant animals or their environment. The presence of STEC virulence genes in the environment was investigated along recreational walking paths in the North West and East Anglia regions of England. In all, 720 boot sock samples from walkers' shoes were collected between April 2013 and July 2014. Multiplex PCR was used to detect E. coli based on the amplification of the uidA gene and investigate STEC-associated virulence genes eaeA, stx1 and stx2. The eaeA virulence gene was detected in 45·5% of the samples, where stx1 and/or stx2 was detected in 12·4% of samples. There was a difference between the two regions sampled, with the North West exhibiting a higher proportion of positive boot socks for stx compared to East Anglia. In univariate analysis, ground conditions, river flow and temperature were associated with positive boot socks. The detection of stx genes in the soil samples suggests that STEC is present in the English countryside and individuals may be at risk for infection after outdoor activities even if there is no direct contact with animals. SIGNIFICANCE AND IMPACT OF THE STUDY: Several outbreaks within the UK have highlighted the danger of contracting Shiga toxin-producing Escherichia coli from contact with areas recently vacated by livestock. This is more likely to occur for STEC infections compared to other zoonotic bacteria given the low infectious dose required. While studies have determined the prevalence of STEC within farms and petting zoos, determining the risk to individuals enjoying recreational outdoor activities that occur near where livestock may be present is less researched. This study describes the prevalence with which stx genes, indicative of STEC bacteria, were found in the environment in the English countryside.
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Affiliation(s)
- E Kintz
- Norwich Medical School, University of East Anglia, Norwich, UK.,NIHR Health Protection Research Unit in Gastrointestinal Infections, Liverpool, UK
| | - N J Williams
- Department of Epidemiology and Population Health, Institute of Infection and Global Health, Leahurst Campus, University of Liverpool, Liverpool, UK
| | - N Jones
- School of Environmental Sciences, University of East Anglia, Norwich, UK
| | - M van der Es
- Norwich Medical School, University of East Anglia, Norwich, UK.,NIHR Health Protection Research Unit in Gastrointestinal Infections, Liverpool, UK
| | - I R Lake
- NIHR Health Protection Research Unit in Gastrointestinal Infections, Liverpool, UK.,School of Environmental Sciences, University of East Anglia, Norwich, UK
| | - S J O'Brien
- NIHR Health Protection Research Unit in Gastrointestinal Infections, Liverpool, UK.,Institute of Population Health Sciences, University of Liverpool, Liverpool, UK
| | - P R Hunter
- Norwich Medical School, University of East Anglia, Norwich, UK.,NIHR Health Protection Research Unit in Gastrointestinal Infections, Liverpool, UK.,Department of Environmental Health, Tshwane University of Technology, Pretoria, South Africa
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26
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Sheng L, Shen X, Benedict C, Su Y, Tsai HC, Schacht E, Kruger CE, Drennan M, Zhu MJ. Microbial Safety of Dairy Manure Fertilizer Application in Raspberry Production. Front Microbiol 2019; 10:2276. [PMID: 31632379 PMCID: PMC6783879 DOI: 10.3389/fmicb.2019.02276] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Accepted: 09/18/2019] [Indexed: 12/27/2022] Open
Abstract
Dairy manure, a by-product in the dairy industry, is also a potential source of nutrients for crops. However, improper application of biological soil amendments of animal origin can be a source of contamination with enteric foodborne pathogens. A 2-year field study was conducted to evaluate impacts of dairy manure fertilizer application on the microbial safety of red raspberry (Rubus idaeus L) production. Fertilizers, including a standard synthetic fertilizer (CON), straight lagoon raw manure (SL), anaerobically digested liquid effluent (DLE), compost (COM) and dairy manure-derived refined fertilizers including ammonium sulfate (AS) and phosphorous solid (PS), were randomly applied in quadruplicate to raspberry plots. Soil, fertilizer, foliar, and raspberry fruit samples were collected during the cropping season for the quantification of indicator microorganisms (total coliform and generic Escherichia coli) and detection of important foodborne pathogens (Shiga toxin-producing E. coli (STEC), Salmonella, and Listeria monocytogenes). Counts of total coliforms in soil were stable over the 2017 cropping season and were not impacted by fertilizer application. In 2018, total coliforms increased with season and soils treated with COM had a significantly higher coliform number than those treated with CON. Both total coliform and generic E. coli in raspberry fruit samples were below the detectable level (3 most probable number/g) regardless of fertilizer types. In both years, no STEC or L. monocytogenes was detected from any of the collected samples regardless of fertilizer treatments. However, Salmonella were detected in some of the fertilizers, including PS (2017), DLE (2018), and SL (2018), which were transferred to soil samples taken directly after application of these fertilizers. Salmonella were not detected in soil samples 2 or 4 months post fertilizer application, foliar, or raspberry fruit samples regardless of fertilizer applications. In summary, one-time application of raw dairy manure or dairy manure-derived fertilizers more than 4 months prior to harvest has no major impact on food safety of red raspberry (6 ft. tall) production in Lynden sandy loam under good agricultural practices.
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Affiliation(s)
- Lina Sheng
- School of Food Science, Washington State University, Pullman, WA, United States
| | - Xiaoye Shen
- School of Food Science, Washington State University, Pullman, WA, United States
| | - Chris Benedict
- Whatcom County Extension, Washington State University, Bellingham, WA, United States
| | - Yuan Su
- School of Food Science, Washington State University, Pullman, WA, United States
| | - Hsieh-Chin Tsai
- School of Food Science, Washington State University, Pullman, WA, United States
| | - Elizabeth Schacht
- Whatcom County Extension, Washington State University, Bellingham, WA, United States
| | - Chad E. Kruger
- Center for Sustaining Agriculture and Natural Resources, Washington State University, Pullman, WA, United States
| | - Margaret Drennan
- Natural Resources Assessment Section, Washington State Department of Agriculture, Olympia, WA, United States
| | - Mei-Jun Zhu
- School of Food Science, Washington State University, Pullman, WA, United States
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Le Maréchal C, Druilhe C, Repérant E, Boscher E, Rouxel S, Le Roux S, Poëzévara T, Ziebal C, Houdayer C, Nagard B, Barbut F, Pourcher AM, Denis M. Evaluation of the occurrence of sporulating and nonsporulating pathogenic bacteria in manure and in digestate of five agricultural biogas plants. Microbiologyopen 2019; 8:e872. [PMID: 31568706 PMCID: PMC6813454 DOI: 10.1002/mbo3.872] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Revised: 04/29/2019] [Accepted: 04/30/2019] [Indexed: 11/11/2022] Open
Abstract
The number of agricultural biogas plants has been increasing in the past decades in some European countries. Digestates obtained after anaerobic digestion (AD) of manure are usually spread on agricultural land; however, their hygiene status regarding pathogens posing public health and/or animal health challenges has been poorly characterized up to now in France. In this study, three replicates of manure and digestate were collected from five farm biogas plants receiving animal manure in order to assess the occurrence and concentrations of sporulating (Clostridium botulinum, Clostridioides difficile, Clostridium perfringens) and nonsporulating (Listeria monocytogenes, thermotolerant Campylobacter spp., Salmonella, Escherichia coli, enterococci) bacteria. Concentrations of E. coli, enterococci, and C. perfringens in digestates ranged from 102 to 104, 104 to 105, and <103 to 7 × 105 CFU/g, respectively. Salmonella and C. difficile were detected in manure and digestate from the five biogas plants at concentrations ranging from <1.3 to >7 × 102 MPN/g and from 1.3 to 3 × 102 MPN/g, respectively. Thermotolerant Campylobacter, detected in all the manures, was only found in two digestates at a concentration of cells ranging from <10 to 2.6 × 102 CFU/g. Listeria monocytogenes and C. botulinum were detected in three manures and four digestates. The bacterial counts of L. monocytogenes and C. botulinum did not exceed 3 × 102 and 14 MPN/g, respectively. C. botulinum type B was detected at very low level in both the manure and digestate of farm biogas plants with no botulism history. The levels of pathogenic bacteria in both manure and digestate suggested that some bacteria can persist throughout AD.
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Affiliation(s)
- Caroline Le Maréchal
- ANSES, Ploufragan-Plouzané Laboratory, Hygiene and Quality of Poultry and Pig Products Unit, Bretagne-Loire University, Ploufragan, France
| | - Céline Druilhe
- OPAALE Research Unit (Optimization of Processes in Agriculture, Agri-Food and Environment), IRSTEA, Bretagne-Loire University, Rennes, France
| | - Elisabeth Repérant
- ANSES, Ploufragan-Plouzané Laboratory, Hygiene and Quality of Poultry and Pig Products Unit, Bretagne-Loire University, Ploufragan, France
| | - Evelyne Boscher
- ANSES, Ploufragan-Plouzané Laboratory, Hygiene and Quality of Poultry and Pig Products Unit, Bretagne-Loire University, Ploufragan, France
| | - Sandra Rouxel
- ANSES, Ploufragan-Plouzané Laboratory, Hygiene and Quality of Poultry and Pig Products Unit, Bretagne-Loire University, Ploufragan, France
| | - Sophie Le Roux
- OPAALE Research Unit (Optimization of Processes in Agriculture, Agri-Food and Environment), IRSTEA, Bretagne-Loire University, Rennes, France
| | - Typhaine Poëzévara
- ANSES, Ploufragan-Plouzané Laboratory, Hygiene and Quality of Poultry and Pig Products Unit, Bretagne-Loire University, Ploufragan, France
| | - Christine Ziebal
- OPAALE Research Unit (Optimization of Processes in Agriculture, Agri-Food and Environment), IRSTEA, Bretagne-Loire University, Rennes, France
| | - Catherine Houdayer
- ANSES, Ploufragan-Plouzané Laboratory, Hygiene and Quality of Poultry and Pig Products Unit, Bretagne-Loire University, Ploufragan, France
| | - Bérengère Nagard
- ANSES, Ploufragan-Plouzané Laboratory, Hygiene and Quality of Poultry and Pig Products Unit, Bretagne-Loire University, Ploufragan, France
| | - Frédéric Barbut
- National Reference Laboratory for Clostridioides difficile, Saint-Antoine Hospital, Assistance Publique-Hôpitaux de Paris, Paris, France
| | - Anne-Marie Pourcher
- OPAALE Research Unit (Optimization of Processes in Agriculture, Agri-Food and Environment), IRSTEA, Bretagne-Loire University, Rennes, France
| | - Martine Denis
- ANSES, Ploufragan-Plouzané Laboratory, Hygiene and Quality of Poultry and Pig Products Unit, Bretagne-Loire University, Ploufragan, France
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29
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Ramos TM, Jay-Russell MT, Millner PD, Shade J, Misiewicz T, Sorge US, Hutchinson M, Lilley J, Pires AFA. Assessment of Biological Soil Amendments of Animal Origin Use, Research Needs, and Extension Opportunities in Organic Production. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2019. [DOI: 10.3389/fsufs.2019.00073] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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30
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Chen Z, Biswas S, Aminabadi P, Stackhouse JW, Jay-Russell MT, Pandey PK. Prevalence of Escherichia coli O157 and Salmonella spp. in solid bovine manure in California using real-time quantitative PCR. Lett Appl Microbiol 2019; 69:23-29. [PMID: 30932223 DOI: 10.1111/lam.13156] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2018] [Revised: 03/20/2019] [Accepted: 03/25/2019] [Indexed: 01/29/2023]
Abstract
The occurrence of Escherichia coli O157 and Salmonella spp. in solid bovine manure was investigated through a multi-county survey in California. Solid bovine manure samples (n = 91) were collected from 13 dairy farms located in multiple counties in California between June 2016 and August 2017. To quantify pathogens, DNA was extracted from bacteria in manure samples. Afterwards, the prevalence and levels of E. coli O157 and Salmonella spp. in solid bovine manure were determined by real-time quantitative PCR (qPCR). The prevalence of E. coli O157 and Salmonella spp. in solid bovine manure was 15·4 and 6·6% respectively. Escherichia coli O157 and Salmonella spp. levels in positive samples ranged from 3·1 to 5·3 log CFU per g and from positive (the population was <3 log CFU per g) to 5·2 log CFU per g respectively. Surface samples of manure piles had higher prevalence and levels of E. coli O157 and Salmonella spp. than subsurface samples, while no seasonal effects on pathogen occurrence were observed. Our results indicated that solid bovine manure is a source of E. coli O157 and Salmonella spp. and the application of untreated manure as biological soil amendments may pose potential risks to public health. SIGNIFICANCE AND IMPACT OF THE STUDY: Our findings suggested that the presence of Escherichia coli O157 and Salmonella spp. in solid bovine manure may pose potential risks if untreated manure is applied as biological soil amendments. Considering the large-scale sampling used in this study, the observations provide a holistic assessment in terms of pathogen prevalence in solid bovine manure.
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Affiliation(s)
- Z Chen
- Deparment of Population Health and Reproduction, School of Veterinary Medicine, Davis, CA, USA.,Western Center for Food Safety, University of California, Davis, CA, USA
| | - S Biswas
- Deparment of Population Health and Reproduction, School of Veterinary Medicine, Davis, CA, USA
| | - P Aminabadi
- Western Center for Food Safety, University of California, Davis, CA, USA
| | - J W Stackhouse
- University of California Cooperative Extensions, Eureka, CA, USA
| | - M T Jay-Russell
- Western Center for Food Safety, University of California, Davis, CA, USA
| | - P K Pandey
- Deparment of Population Health and Reproduction, School of Veterinary Medicine, Davis, CA, USA
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31
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Survival of Escherichia coli in Manure-Amended Soils Is Affected by Spatiotemporal, Agricultural, and Weather Factors in the Mid-Atlantic United States. Appl Environ Microbiol 2019; 85:AEM.02392-18. [PMID: 30552193 DOI: 10.1128/aem.02392-18] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Accepted: 12/10/2018] [Indexed: 11/20/2022] Open
Abstract
Untreated biological soil amendments of animal origin (BSAAO), such as manure, are commonly used to fertilize soils for growing fruit and vegetable crops and can contain enteric bacterial foodborne pathogens. Little is known about the comparative longitudinal survival of pathogens in agricultural fields containing different types of BSAAO, and field data may be useful to determine intervals between manure application and harvest of produce intended for human consumption to minimize foodborne illness. This study generated 324 survival profiles from 12 different field trials at three different sites (UMES, PA, and BARC) in the Mid-Atlantic United States from 2011 to 2015 of inoculated nonpathogenic Escherichia coli (gEc) and attenuated O157 E. coli (attO157) in soils which were unamended (UN) or amended with untreated poultry litter (PL), horse manure (HM), or dairy manure solids (DMS) or liquids (DML). Site, season, inoculum level (low/high), amendment type, management (organic/conventional), and depth (surface/tilled) all significantly (P < 0.0001) influenced survival duration (dpi100mort). Spatiotemporal factors (site, year, and season) in which the field trial was conducted influenced survival durations of gEc and attO157 to a greater extent than weather effects (average daily temperature and rainfall). Initial soil moisture content was the individual factor that accounted for the greatest percentage of variability in survival duration. PL supported greater survival durations of gEc and attO157, followed by HM, UN, and DMS in amended soils. The majority of survival profiles for gEc and attO157 which survived for more than 90 days came from a specific year (i.e., 2013). The effect of management and depth on dpi100mort were dependent on the amendment type evaluated.IMPORTANCE Current language in the Food Safety Modernization Act Produce Safety Rule states no objection to a 90- or 120-day interval between application of untreated BSAAO and harvest of crops to minimize transfer of pathogens to produce intended for human consumption with the intent to limit potential cases of foodborne illness. This regional multiple season, multiple location field trial determined survival durations of Escherichia coli in soils amended with manure to determine whether this interval is appropriate. Spatiotemporal factors influence survival durations of E. coli more than amendment type, total amount of E. coli present, organic or conventional soil management, and depth of manure application. Overall, these data show poultry litter may support extended survival of E. coli compared to horse manure or dairy manure, but spatiotemporal factors like site and season may have more influence than manure type in supporting survival of E. coli beyond 90 days in amended soils in the Mid-Atlantic United States.
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Liu W, An W, Jeppesen E, Ma J, Yang M, Trolle D. Modelling the fate and transport of Cryptosporidium, a zoonotic and waterborne pathogen, in the Daning River watershed of the Three Gorges Reservoir Region, China. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2019; 232:462-474. [PMID: 30503897 DOI: 10.1016/j.jenvman.2018.10.064] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2018] [Revised: 09/29/2018] [Accepted: 10/17/2018] [Indexed: 06/09/2023]
Abstract
Oospores of Cryptosporidium, a waterborne pathogen of great concern, are widely distributed in surface waters in China and pose a threat to human health. This study seeks to explore the spatio-temporal patterns of Cryptosporidium concentrations. We focus on the Daning River watershed (4166 km2) of the Three Gorges Reservoir Region (TGR) during the period 2008 to 2013 and use the SWAT (Soil and Water Assessment Tool) model to test two mitigation scenarios. Based on data on animal husbandry, population, agriculture and WWTPs (wastewater treatment plants), Cryptosporidium transport in the Daning River watershed was simulated using a calibrated hydrological and sediment transport model. Our model results showed that the average annual concentration of oocysts in the whole watershed was 9.5 oocysts/10L, but high spatial variability occurred, ranging from 0.7 to 33.4 oocysts/10L. Highest monthly mean oocysts concentrations at the outlets of the sub-basins were found at high runoff and high fertilization or at the lowest flow, while minimum monthly mean oocysts concentrations were recorded at high runoff only. A model parameter sensitivity analysis showed that the Cryptosporidium soil partitioning coefficient (BACTKDQ) and the temperature adjustment factor for Cryptosporidium die-off (THBACT) were the only two sensitive parameters among the microbial parameters. The construction of multiple WWTPs throughout the watershed and composting of 50% of the feces from rural citizens and livestock up to 56 days before its application as fertilizer could significantly reduce the concentration of oocysts. Our Cryptosporidium transport model and simulation results may assist in the establishment of better pollution control countermeasures in the Daning River and other similar watersheds.
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Affiliation(s)
- Wei Liu
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, PR China; Department of Bioscience, Aarhus University, Vejlsøvej 25, 8600, Silkeborg, Denmark; Sino-Danish Centre for Education and Research (SDC), Beijing, 101408, PR China
| | - Wei An
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, PR China.
| | - Erik Jeppesen
- Department of Bioscience, Aarhus University, Vejlsøvej 25, 8600, Silkeborg, Denmark; Sino-Danish Centre for Education and Research (SDC), Beijing, 101408, PR China
| | - Jinfeng Ma
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, PR China
| | - Min Yang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, PR China; Sino-Danish Centre for Education and Research (SDC), Beijing, 101408, PR China
| | - Dennis Trolle
- Department of Bioscience, Aarhus University, Vejlsøvej 25, 8600, Silkeborg, Denmark; Sino-Danish Centre for Education and Research (SDC), Beijing, 101408, PR China
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van der Hooft JJJ, Alghefari W, Watson E, Everest P, Morton FR, Burgess KEV, Smith DGE. Unexpected differential metabolic responses of Campylobacter jejuni to the abundant presence of glutamate and fucose. Metabolomics 2018; 14:144. [PMID: 30830405 PMCID: PMC6208705 DOI: 10.1007/s11306-018-1438-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Accepted: 10/04/2018] [Indexed: 02/01/2023]
Abstract
INTRODUCTION Campylobacter jejuni is the leading cause of foodborne bacterial enteritis in humans, and yet little is known in regard to how genetic diversity and metabolic capabilities among isolates affect their metabolic phenotype and pathogenicity. OBJECTIVES For instance, the C. jejuni 11168 strain can utilize both L-fucose and L-glutamate as a carbon source, which provides the strain with a competitive advantage in some environments and in this study we set out to assess the metabolic response of C. jejuni 11168 to the presence of L-fucose and L-glutamate in the growth medium. METHODS To achieve this, untargeted hydrophilic liquid chromatography coupled to mass spectrometry was used to obtain metabolite profiles of supernatant extracts obtained at three different time points up to 24 h. RESULTS This study identified both the depletion and the production and subsequent release of a multitude of expected and unexpected metabolites during the growth of C. jejuni 11168 under three different conditions. A large set of standards allowed identification of a number of metabolites. Further mass spectrometry fragmentation analysis allowed the additional annotation of substrate-specific metabolites. The results show that C. jejuni 11168 upon L-fucose addition indeed produces degradation products of the fucose pathway. Furthermore, methionine was faster depleted from the medium, consistent with previously-observed methionine auxotrophy. CONCLUSIONS Moreover, a multitude of not previously annotated metabolites in C. jejuni were found to be increased specifically upon L-fucose addition. These metabolites may well play a role in the pathogenicity of this C. jejuni strain.
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Affiliation(s)
| | - Wejdan Alghefari
- King Abdulaziz University, Jeddah, 21589, Kingdom of Saudi Arabia
- Institute of Biological Chemistry, Biophysics & Bioengineering, Heriot-Watt University, Edinburgh, EH14 4AS, UK
- Moredun Research Institute, Pentlands Science Park, Bush Loan, Penicuik, EH26 0PZ, UK
| | - Eleanor Watson
- Moredun Research Institute, Pentlands Science Park, Bush Loan, Penicuik, EH26 0PZ, UK
| | - Paul Everest
- School of Veterinary Medicine, University of Glasgow, Bearsden Road, Glasgow, G61 1QH, UK
| | - Fraser R Morton
- Glasgow Polyomics, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8QQ, UK
| | - Karl E V Burgess
- Glasgow Polyomics, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8QQ, UK
| | - David G E Smith
- Institute of Biological Chemistry, Biophysics & Bioengineering, Heriot-Watt University, Edinburgh, EH14 4AS, UK.
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Chen Z, Kim J, Jiang X. Survival of
Escherichia coli
O157:H7 and
Salmonella enterica
in animal waste‐based composts as influenced by compost type, storage condition and inoculum level. J Appl Microbiol 2018; 124:1311-1323. [DOI: 10.1111/jam.13719] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2017] [Revised: 01/24/2018] [Accepted: 01/28/2018] [Indexed: 11/28/2022]
Affiliation(s)
- Z. Chen
- Department of Food, Nutrition, and Packaging Sciences Clemson University Clemson SC USA
| | - J. Kim
- Department of Food, Nutrition, and Packaging Sciences Clemson University Clemson SC USA
| | - X. Jiang
- Department of Food, Nutrition, and Packaging Sciences Clemson University Clemson SC USA
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35
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Castro H, Jaakkonen A, Hakkinen M, Korkeala H, Lindström M. Occurrence, Persistence, and Contamination Routes of Listeria monocytogenes Genotypes on Three Finnish Dairy Cattle Farms: a Longitudinal Study. Appl Environ Microbiol 2018; 84:e02000-17. [PMID: 29222098 PMCID: PMC5795088 DOI: 10.1128/aem.02000-17] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2017] [Accepted: 11/30/2017] [Indexed: 11/20/2022] Open
Abstract
The molecular epidemiology of Listeria monocytogenes was investigated in a longitudinal study of three Finnish dairy farms during 2013 to 2016. A total of 186 bulk tank milk (BTM), 224 milk filter sock (MFS), and 1,702 barn environment samples were analyzed, and isolates of L. monocytogenes were genotyped using pulsed-field gel electrophoresis. L. monocytogenes occurred throughout the year in all sample types, and the prevalence in MFS increased significantly during the indoor season. L. monocytogenes was more prevalent in MFS (29%) than in BTM (13%) samples. However, the prevalence of L. monocytogenes varied more between farms in samples of MFS (13 to 48%) than in BTM (10 to 16%). For each farm, the L. monocytogenes genotypes detected were classified by persistence (defined as persistent if isolated from ≥3 samples during ≥6 months) and predominance (defined as predominant if >5% prevalence on at least one farm visit). The prevalence of sporadic genotypes was 4 to 5% on all three farms. In contrast, the prevalence of persistent predominant genotypes varied between farms by 4% to 16%. The highest prevalence of persistent predominant genotypes was observed on the farm with the poorest production hygiene. Persistent predominant genotypes were most prevalent on feeding surfaces, water troughs, and floors. Genotypes isolated from the milking system or from cow udders had a greater relative risk of occurring in BTM and MFS than genotypes that only occurred elsewhere in the farm, supporting the hypothesis that L. monocytogenes is transmitted to milk from contamination on the udder surface or in the milking equipment.IMPORTANCEListeria monocytogenes is a ubiquitous environmental bacterium and the causative agent of a serious foodborne illness, listeriosis. Dairy products are common vehicles of listeriosis, and dairy cattle farms harbor L. monocytogenes genotypes associated with human listeriosis outbreaks. Indeed, dairy cattle farms act as a reservoir of L. monocytogenes, and the organism is frequently detected in bulk tank milk (BTM) and in the feces of clinically healthy cows. The ecology of L. monocytogenes in the farm environment is complex and poorly understood. Isolates of the same L. monocytogenes genotype can occur in the farm for years, but the factors contributing to the persistence of genotypes on dairy farms are unknown. Knowledge of the persistence patterns and contamination routes of L. monocytogenes on dairy farms can improve management of the contamination pressure in the farm environment and aid in the development of focused control strategies to reduce BTM contamination.
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Affiliation(s)
- Hanna Castro
- Department of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine, University of Helsinki, Helsinki, Finland
| | - Anniina Jaakkonen
- Microbiology Research Unit, Finnish Food Safety Authority (Evira), Helsinki, Finland
| | - Marjaana Hakkinen
- Microbiology Research Unit, Finnish Food Safety Authority (Evira), Helsinki, Finland
| | - Hannu Korkeala
- Department of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine, University of Helsinki, Helsinki, Finland
| | - Miia Lindström
- Department of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine, University of Helsinki, Helsinki, Finland
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Costa A, Gusmara C, Gardoni D, Zaninelli M, Tambone F, Sala V, Guarino M. The effect of anaerobic digestion and storage on indicator microorganisms in swine and dairy manure. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017; 24:24135-24146. [PMID: 28884271 DOI: 10.1007/s11356-017-0011-5] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2016] [Accepted: 08/22/2017] [Indexed: 06/07/2023]
Abstract
The aim of this experimental study was to evaluate the influence of anaerobic digestion and storage on indicator microorganisms in swine and dairy excreta. Samples were collected every 90 days for 15 months at eight farms, four pig, and four dairy farms, four of them having a biogas plant. Moreover, to evaluate storage effects on samples, 20 l of manure and slurry taken at each farm (digested manure only in farms with a biogas plant) were stored in a controlled climatic chamber at 18 °C, for 6 months. The bacterial load and the chemical-physical characteristics of excreta were evaluated at each sampling time, stored slurry, and manure were sampled and analyzed every 2 months. A high variability of the concentration of bacteria in the different excreta types was observed during the experiment, mainly depending on the type and time of treatment. No sample revealed either the presence of Escherichia coli O157:H7 or of Salmonella, usually linked to the temporary rearing of infected animals in facilities. Anaerobic digestion and storage affected in a significant way the reduction of indicator bacteria like lactobacilli, coliforms, and streptococci. Anaerobic digestion lowered coliforms in pig slurry (- 2.80 log, P < 0.05), streptococci in dairy manure (- 2.44 log, P < 0.001) and in pig slurry (- 1.43 log, P < 0.05), and lactobacilli in pig slurry (- 3.03 log, P < 0.05). Storage lowered coliforms and the other indicators counts, in particular in fresh wastes, while clostridia did not show a reduction in concentration.
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Affiliation(s)
- Annamaria Costa
- Department of Health, Animal Science and Food Safety, Faculty of Veterinary Medicine, University of Milan, via Celoria, 10, 20133, Milan, Italy.
| | - Claudia Gusmara
- Department of Veterinary Medicine, Faculty of Veterinary Medicine, University of Milan, via Celoria, 10, 20133, Milan, Italy
| | - Davide Gardoni
- Department of Health, Animal Science and Food Safety, Faculty of Veterinary Medicine, University of Milan, via Celoria, 10, 20133, Milan, Italy
| | - Mauro Zaninelli
- Department of Human Sciences and Quality of Life Promotion, Università Telematica San Raffaele Roma, Via di Val Cannuta 247, 00166, Rome, Italy
| | - Fulvia Tambone
- Department of Agricultural and Environmental Sciences-Production, Landscape, Agroenergy, University of Milan, via Celoria, 2, 20133, Milan, Italy
| | - Vittorio Sala
- Department of Veterinary Medicine, Faculty of Veterinary Medicine, University of Milan, via Celoria, 10, 20133, Milan, Italy
| | - Marcella Guarino
- Department of Health, Animal Science and Food Safety, Faculty of Veterinary Medicine, University of Milan, via Celoria, 10, 20133, Milan, Italy
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Hutchison ML, Harrison D, Heath JF, Monaghan JM. Fate of Escherichia coli O145 present naturally in bovine slurry applied to vegetables before harvest, after washing and simulated wholesale and retail distribution. J Appl Microbiol 2017; 123:1597-1606. [PMID: 28948664 DOI: 10.1111/jam.13593] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2017] [Revised: 09/08/2017] [Accepted: 09/20/2017] [Indexed: 11/30/2022]
Abstract
AIMS To determine the fate of Escherichia coli on vegetables that were processed through commercial wash treatments and stored under simulated retail conditions at 4°C or wholesale at fluctuating ambient temperatures (0-25°C, dependent on season). METHODS AND RESULTS Bovine slurry that was naturally contaminated with E. coli O145 was applied without dilution or diluted 1:10 using borehole water to growing potatoes, leeks or carrots. Manure was applied 1 week prior to harvest to simulate a near-harvest contamination event by manure deposition or an application of contaminated water to simulate a flooding event or irrigation from a contaminated water source. At harvest, crops were contaminated at up to 2 log cfu g-1 . Washing transferred E. coli into the water of a flotation tank used for potato washing and did not completely remove all traces of contamination from the crop. Manure-contaminated potatoes were observed to contain 0·72 cfu E. coli O145 g-1 after processing and retail storage. Manure-contaminated leeks harboured 0·73-1·55 cfu E. coli O145 g-1 after washing and storage. There was no cross-contamination when leeks were spray washed. Washing in an abrasive drum resulted in less than perfect decontamination for manure-contaminated carrots. There were five post-distribution isolations from carrots irrigated with contaminated water 24 h prior to harvest. CONCLUSIONS Standard commercial washing and distribution conditions may be insufficient to reliably control human pathogenic E. coli on fresh produce. SIGNIFICANCE AND IMPACT Previous speculation that the cause of a UK foodborne disease outbreak was soil from imperfectly cleaned vegetables is plausible.
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Affiliation(s)
- M L Hutchison
- Hutchison Scientific Ltd, Dundee, UK.,School of Veterinary Sciences, Food Microbiology, University of Bristol, Langford, UK
| | - D Harrison
- School of Veterinary Sciences, Food Microbiology, University of Bristol, Langford, UK
| | - J F Heath
- Department of Crop and Environment Science, Fresh Produce Research Centre, Harper Adams University, Newport, Shropshire, UK
| | - J M Monaghan
- Department of Crop and Environment Science, Fresh Produce Research Centre, Harper Adams University, Newport, Shropshire, UK
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Lupindu AM. Epidemiology of Shiga toxin-producingEscherichia coliO157:H7 in Africa in review. S Afr J Infect Dis 2017. [DOI: 10.1080/23120053.2017.1376558] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Affiliation(s)
- Athumani M Lupindu
- Department of Veterinary Medicine and Public Health, College of Veterinary and Biomedical Sciences, Sokoine University of Agriculture, Morogoro, Tanzania
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Pérez-Godínez EA, Lagunes-Zarate J, Corona-Hernández J, Barajas-Aceves M. Growth and reproductive potential of Eisenia foetida (Sav) on various zoo animal dungs after two methods of pre-composting followed by vermicomposting. WASTE MANAGEMENT (NEW YORK, N.Y.) 2017; 64:67-78. [PMID: 28365274 DOI: 10.1016/j.wasman.2017.03.036] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2016] [Revised: 03/21/2017] [Accepted: 03/21/2017] [Indexed: 06/07/2023]
Abstract
Disposal of animal manure without treatment can be harmful to the environment. In this study, samples of four zoo animal dungs and one horse dung were pre-composted in two ways: (a) traditional composting and (b) bokashi pre-composting for 1month, followed by vermicomposting for 3months. The permanence (PEf) and reproductive potential (RP) of Eisenia foetida as well as the quality of vermicompost were evaluated. The PEf values and RP index of E. foetida were higher for samples pre-composted using the traditional composting method (98.7-88% and 31.85-16.27%, respectively) followed by vermicomposting (92.7-72.7% and 22.96-13.51%, respectively), when compared with those for bokashi pre-composted samples followed by vermicomposting, except for the horse dung sample (100% for both the parameters). The values of electrical conductivity (EC), cation exchange capacity (CEC), organic C, total N, available P, C/N ratio, and pH showed that both treatments achieved the norms of vermicompost (<4mScm-1, 40cmolkg-1, 20-50%, 1-4%, ≤20, 5.5-8.5, respectively). However, the maturity indices of vermicompost, namely, organic matter loss, N loss, and CEC/organic carbon (OC) ratio indicated that bokashi pre-composting followed by vermicomposting produced the highest values (98.7-70.7%, 97.67-96.65%, and 2.7-1.97%, respectively), when compared with the other method adapted in this study. Nevertheless, further studies with plants for plant growth evaluation are needed to assess the benefits and limitations of these two pre-composting methods prior to vermicomposting.
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Affiliation(s)
- Edmundo Arturo Pérez-Godínez
- Área de Biología, Departamento de Preparatoria Agrícola Universidad Autónoma Chapingo, Universidad Autónoma Chapingo, km. 38.5 Carretera Mexico-Texcoco, Chapingo, Edo de México, C.P. 56230 México, D.F., Mexico
| | - Jorge Lagunes-Zarate
- Área de Biología, Departamento de Preparatoria Agrícola Universidad Autónoma Chapingo, Universidad Autónoma Chapingo, km. 38.5 Carretera Mexico-Texcoco, Chapingo, Edo de México, C.P. 56230 México, D.F., Mexico
| | - Juan Corona-Hernández
- Department of Biotechnology and Bioengineering, CINVESTAV-IPN, Av. IPN 2508, San Pedro Zacatenco, C.P. 07360 México, D.F., Mexico
| | - Martha Barajas-Aceves
- Department of Biotechnology and Bioengineering, CINVESTAV-IPN, Av. IPN 2508, San Pedro Zacatenco, C.P. 07360 México, D.F., Mexico.
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García-Sánchez M, Taušnerová H, Hanč A, Tlustoš P. Stabilization of different starting materials through vermicomposting in a continuous-feeding system: Changes in chemical and biological parameters. WASTE MANAGEMENT (NEW YORK, N.Y.) 2017; 62:33-42. [PMID: 28215973 DOI: 10.1016/j.wasman.2017.02.008] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2016] [Revised: 01/30/2017] [Accepted: 02/06/2017] [Indexed: 06/06/2023]
Abstract
In this study the feasibility of Eisenia andrei to digest great amount of wastes including horse manure (HM), apple pomace (AP), grape pomace (GP), and digestate (DG) was monitored through a continuous-feeding system. New layers of fresh material were gradually added to form an aged-profile of layers in order to understand the interaction between earthworms and microorganisms during vermicomposting. Thus, changes in chemical and biological parameters were evaluated for 240days. The earthworm population reached maximum values in 120 d-old-layer, which was related to an increase in overall microbial biomass, assayed as dehydrogenase activity, in all of the processed materials. The pH was generally alkaline or neutral in all of the materials. The electrical conductivity did not modify significantly during vermicomposting, except in the case of the processed GP, and DG. The stabilization, in all of the processed materials, was detected after 240 d of vermicomposting, as indicated the decline in the content of dissolved organic carbon (DOC). The N-NO3- content exhibited an enhanced in the processed HM and AP, while a generalized decreased was found in the GP, and DG materials in 240 d-old-layer. The decline in microbial biomass activity, in all processed substrates, was related to a decrease in the earthworm activity after 240 d of vermicomposting, indicating a high degree of stabilization. However, the β-glucosidase, phosphatase, protease, and o-diphenol oxidase activities were different according to the age of layers and type of processed material. The phytotoxicity test indicated that the end products of the processed AP and DG were chemically stable and enriched with nutrients in comparison with the HM and GP vermicompost. This fact indicates to stabilization (maturation) in the end product, which is important for its safe disposal as an organic nutrient-rich product.
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Affiliation(s)
- Mercedes García-Sánchez
- Department of Agro-Environmental Chemistry and Plant Nutrition, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Kamýcká 129, Prague 6-Suchdol, Czech Republic.
| | - Hana Taušnerová
- Department of Agro-Environmental Chemistry and Plant Nutrition, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Kamýcká 129, Prague 6-Suchdol, Czech Republic
| | - Aleš Hanč
- Department of Agro-Environmental Chemistry and Plant Nutrition, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Kamýcká 129, Prague 6-Suchdol, Czech Republic
| | - Pavel Tlustoš
- Department of Agro-Environmental Chemistry and Plant Nutrition, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Kamýcká 129, Prague 6-Suchdol, Czech Republic
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Viaene J, Nelissen V, Reubens B, Willekens K, Driehuis F, De Neve S, Vandecasteele B. Improving the product stability and fertilizer value of cattle slurry solid fraction through co-composting or co-ensiling. WASTE MANAGEMENT (NEW YORK, N.Y.) 2017; 61:494-505. [PMID: 28057418 DOI: 10.1016/j.wasman.2016.12.037] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2016] [Revised: 12/18/2016] [Accepted: 12/21/2016] [Indexed: 06/06/2023]
Abstract
Separating dairy cattle slurry in a liquid and solid fraction (SF) is gaining more interest, since it enables a more targeted use of both fractions. However, the valorization of the SF is limited on P-rich soils, due to its high P content, and the export or use as bedding material requires sanitation. Therefore, we investigated the influence of composting or ensiling the SF, whether or not mixed with bulking agents, on the product quality in terms of fertilizer value, sanitation and stability. Ensiling can be considered as a controlled storage method for conserving C and nutrients. Soil amendment with co-ensiled SF resulted in a higher N mineralization and crop growth compared to amendment of co-composted SF. Co-composting SF with structure-rich feedstock materials optimized the composting process and sanitation when compared with composting pure SF and did not increase the risk for extreme-heat-resistant spores of thermophilic aerobic spore-forming bacteria (X-TAS). Further, the composts contained more P per unit of fresh weight than the silages, beneficial for the export of the composted SF. The oxygen uptake rate was found to be less powerful to determine the stability of fresh, composted and ensiled SF.
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Affiliation(s)
- Jarinda Viaene
- Institute for Agricultural and Fisheries Research, Plant Sciences Unit, Crop Husbandry and Environment, Burg. Van Gansberghelaan 109, 9820 Merelbeke, Belgium; Department of Soil Management, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium.
| | - Victoria Nelissen
- Institute for Agricultural and Fisheries Research, Plant Sciences Unit, Crop Husbandry and Environment, Burg. Van Gansberghelaan 109, 9820 Merelbeke, Belgium.
| | - Bert Reubens
- Institute for Agricultural and Fisheries Research, Plant Sciences Unit, Crop Husbandry and Environment, Burg. Van Gansberghelaan 109, 9820 Merelbeke, Belgium.
| | - Koen Willekens
- Institute for Agricultural and Fisheries Research, Plant Sciences Unit, Crop Husbandry and Environment, Burg. Van Gansberghelaan 109, 9820 Merelbeke, Belgium.
| | - Frank Driehuis
- NIZO Food Research BV, Kernhemseweg 2, 6718 ZB Ede, The Netherlands.
| | - Stefaan De Neve
- Department of Soil Management, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium.
| | - Bart Vandecasteele
- Institute for Agricultural and Fisheries Research, Plant Sciences Unit, Crop Husbandry and Environment, Burg. Van Gansberghelaan 109, 9820 Merelbeke, Belgium.
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Growth potential of Listeria monocytogenes in artificially contaminated celery and chicken salad. Food Control 2017. [DOI: 10.1016/j.foodcont.2016.10.044] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Mishra A, Pang H, Buchanan RL, Schaffner DW, Pradhan AK. A System Model for Understanding the Role of Animal Feces as a Route of Contamination of Leafy Greens before Harvest. Appl Environ Microbiol 2017; 83:e02775-16. [PMID: 27836846 PMCID: PMC5203627 DOI: 10.1128/aem.02775-16] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Accepted: 10/30/2016] [Indexed: 11/20/2022] Open
Abstract
The majority of foodborne outbreaks in the United States associated with the consumption of leafy greens contaminated with Escherichia coli O157:H7 have been reported during the period of July to November. A dynamic system model consisting of subsystems and inputs to the system (soil, irrigation, cattle, wild pig, and rainfall) simulating a hypothetical farm was developed. The model assumed two crops of lettuce in a year and simulated planting, irrigation, harvesting, ground preparation for the new crop, contamination of soil and plants, and survival of E. coli O157:H7. As predicted by the baseline model for crops harvested in different months from conventional fields, an estimated 13 out of 257 (5.05%) first crops harvested in July would have at least one plant with at least 1 CFU of E. coli O157:H7. Predictions indicate that no first crops would be contaminated with at least 1 CFU of E. coli O157:H7 for other months (April to June). The maximum E. coli O157:H7 concentration in a plant was higher in the second crop (27.10 CFU) than in the first crop (9.82 CFU). For the second crop, the probabilities of having at least one plant with at least 1 CFU of E. coli O157:H7 in a crop were predicted as 15/228 (6.6%), 5/333 (1.5%), 14/324 (4.3%), and 6/115 (5.2%) in August, September, October, and November, respectively. For organic fields, the probabilities of having at least one plant with ≥1 CFU of E. coli O157:H7 in a crop (3.45%) were predicted to be higher than those for the conventional fields (2.15%). IMPORTANCE This study is the first attempt toward developing a mathematical system model to understand the pathway of E. coli O157:H7 in the production of leafy greens. Results of the presented system model indicate that the seasonality of outbreaks of E. coli O157:H7-associated contamination of leafy greens was in good agreement with the prevalence of this pathogen in cattle and wild pig feces in a major leafy greens-producing region in California. On the basis of comparisons among the results of different scenarios, it can be recommended that the concentration of E. coli O157:H7 in leafy greens can be reduced considerably if contamination of soil with wild pig and cattle feces is mitigated.
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Affiliation(s)
- Abhinav Mishra
- Department of Nutrition and Food Science, University of Maryland, College Park, Maryland, USA
| | - Hao Pang
- Department of Nutrition and Food Science, University of Maryland, College Park, Maryland, USA
| | - Robert L Buchanan
- Department of Nutrition and Food Science, University of Maryland, College Park, Maryland, USA
- Center for Food Safety and Security Systems, University of Maryland, College Park, Maryland, USA
| | - Donald W Schaffner
- Department of Food Science, Rutgers University, New Brunswick, New Jersey, USA
| | - Abani K Pradhan
- Department of Nutrition and Food Science, University of Maryland, College Park, Maryland, USA
- Center for Food Safety and Security Systems, University of Maryland, College Park, Maryland, USA
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Roberts BN, Bailey RH, McLaughlin MR, Brooks JP. Decay rates of zoonotic pathogens and viral surrogates in soils amended with biosolids and manures and comparison of qPCR and culture derived rates. THE SCIENCE OF THE TOTAL ENVIRONMENT 2016; 573:671-679. [PMID: 27585434 DOI: 10.1016/j.scitotenv.2016.08.088] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2016] [Revised: 08/13/2016] [Accepted: 08/13/2016] [Indexed: 06/06/2023]
Abstract
AIMS The purpose of this study was to establish inactivation decay constants of foodborne pathogens and coliphage in clay and sandy soils for future "downstream" analyses such as quantitative microbial risk analysis and to compare cultivation-dependent and -independent (e.g. qPCR) methods. METHODS AND RESULTS Salmonella enterica, Campylobacter jejuni, Listeria monocytogenes, Escherichia coli O157:H7, and Clostridium perfringens, were seeded together with MS2 and ØX174 phages, into three waste matrices (Class B biosolids, swine lagoon effluent, cattle manure), and phosphate buffered saline (PBS) as a control, and applied to two soil types (sandy loam, clay loam) using two management practices (incorporated, surface applied). S. enterica and L. monocytogenes inactivation rates were positively affected (e.g. slower rate) by solid wastes, while C. jejuni was quickly inactivated by day 7 regardless of waste type. The use of qPCR provided more conservative inactivation rates, with qPCR-based rates typically twice as slow as cultivation-based. The effect of soil type and management were less apparent as rates were variably affected. For instance, incorporation of waste negatively impacted (e.g. faster rate) inactivation of Salmonella when measured by qPCR, while the opposite was true when measured by cultivation. Inactivation rates were organism∗waste∗soil∗management dependent since the interactions of these main effects significantly affected most combinations. CONCLUSIONS Class B biosolids and cattle manure most often slowed inactivation when measured by cultivation, but the complex interactions between variables and organism made sweeping conclusions difficult. On the contrary cultivation-independent inactivation rates were negatively affected by solid wastes. Inactivation rates developed by cultivation-dependent and -independent assays needs further scrutiny as interprerations can vary by orders of magnitude depending on the organism∗environment combination. SIGNIFICANCE AND IMPACT OF THE STUDY This study compares decay rate data based on waste, soil, management and assay type which can be further used in risk assessments.
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Affiliation(s)
- B N Roberts
- Agriculture Research Service, United States Department of Agriculture, Mississippi State, MS 39762, USA.
| | - R H Bailey
- Pathobiology and Population Medicine Department, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, USA
| | - M R McLaughlin
- Agriculture Research Service, United States Department of Agriculture, Mississippi State, MS 39762, USA
| | - J P Brooks
- Agriculture Research Service, United States Department of Agriculture, Mississippi State, MS 39762, USA
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Wambui JM, Karuri EG, Ojiambo JA, Njage PMK. Application of Probabilistic Modeling to Quantify the Reduction Levels of Hepatocellular Carcinoma Risk Attributable to Chronic Aflatoxins Exposure. Nutr Cancer 2016; 69:1-13. [DOI: 10.1080/01635581.2017.1247892] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Simujide H, Aorigele C, Wang CJ, Zhang TH, Manda B. Evaluation of calcium cyanamide addition during co-composting of manure and maize straw in a forced-aeration static-pile system. JOURNAL OF ENVIRONMENTAL HEALTH SCIENCE & ENGINEERING 2016; 14:18. [PMID: 27800167 PMCID: PMC5080734 DOI: 10.1186/s40201-016-0258-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/15/2015] [Accepted: 10/03/2016] [Indexed: 06/06/2023]
Abstract
BACKGROUND Composting is one of the most environmentally friendly treatments to inactivate pathogenic organisms or reduce them to acceptable levels. However, even under thermal conditions, some pathogenic organisms such as E. coli could exist for a long time in composting. Such great persistence may increase the possibility of outbreaks of these organisms and further increase the environmental load. Calcium cyanamide (CaCN2) has recently been recognized to have the fungicidal effect on the pathogens of the soilborne diseases. So, the present study determined the effect of CaCN2 addition on composting progress as an antimicrobial agent and an amendment during forced-aeration static-pile composting of cow manure, which was mainly aimed to inhibit the pathogens that had not been inactivated by heat during composting. METHODS The mixtures of dairy cow manure and maize straw with addition of 2 % CaCN2 or no addition were composted for 63 days. The physical, chemical and biological changes in compost mixtures were examined during composting. The data were statistically analyzed using ANOVA procedure from SAS software (version 9.0). RESULTS The results showed that the addition of CaCN2 significantly increased the maximum temperature and lengthened the duration of the thermophilic phase, and increased the percent T-N but decreased C/N ratio. For microbiological test, the addition of CaCN2 shortened the time to inactivate E. coli, and increased the total average population of thermophilic bacteria but did not significantly influence that of mesophilic bacteria. CONCLUSION The results indicated that the addition of CaCN2, at least at the additive content of 2 % could benefit the thermophilic phase and the composting could quickly reach the sanitary standard during the composting of manure with maize straw in a forced-aeration static-pile system. This finding will contribute to solve the feces disposal problems.
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Affiliation(s)
- Huasai Simujide
- College of Animal Science, Inner Mongolia Agricultural University, Zhaowuda road, 306, 010018 Hohhot, China
| | - Chen Aorigele
- College of Animal Science, Inner Mongolia Agricultural University, Zhaowuda road, 306, 010018 Hohhot, China
| | - Chun-Jie Wang
- College of Veterinary Medicine, Inner Mongolia Agricultural University, Zhaowuda road, 306, 010018 Hohhot, China
| | - Tian-Hua Zhang
- College of Animal Science, Inner Mongolia Agricultural University, Zhaowuda road, 306, 010018 Hohhot, China
| | - Bai Manda
- College of Animal Science, Inner Mongolia Agricultural University, Zhaowuda road, 306, 010018 Hohhot, China
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Abstract
This introductory article provides an overview of preharvest food safety activities and initiatives for the past 15 years. The section on traditional areas of preharvest food safety focuses on significant scientific advancements that are a culmination of collaborative efforts (both public health and agriculture) and significant research results. The highlighted advancements provide the foundation for exploring future preharvest areas and for improving and focusing on more specific intervention/control/prevention strategies. Examples include Escherichia coli and cattle, Salmonella and Campylobacter in poultry, and interventions and prevention and control programs. The section on "nontraditional" preharvest food safety areas brings attention to potential emerging food safety issues and to future food safety research directions. These include organic production, the FDA's Produce Rule (water and manure), genomic sequencing, antimicrobial resistance, and performance metrics. The concluding section emphasizes important themes such as strategic planning, coordination, epidemiology, and the need for understanding food safety production as a continuum. Food safety research, whether at the pre- or postharvest level, will continue to be a fascinating complex web of foodborne pathogens, risk factors, and scientific and policy interactions. Food safety priorities and research must continue to evolve with emerging global issues, emerging technologies, and methods but remain grounded in a multidisciplinary, collaborative, and systematic approach.
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48
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Maynaud G, Pourcher AM, Ziebal C, Cuny A, Druilhe C, Steyer JP, Wéry N. Persistence and Potential Viable but Non-culturable State of Pathogenic Bacteria during Storage of Digestates from Agricultural Biogas Plants. Front Microbiol 2016; 7:1469. [PMID: 27695451 PMCID: PMC5026136 DOI: 10.3389/fmicb.2016.01469] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2016] [Accepted: 09/02/2016] [Indexed: 11/13/2022] Open
Abstract
Despite the development of on-farm anaerobic digestion as a process for making profitable use of animal by-products, factors leading to the inactivation of pathogenic bacteria during storage of digestates remain poorly described. Here, a microcosm approach was used to evaluate the persistence of three pathogenic bacteria (Salmonella enterica Derby, Campylobacter coli and Listeria monocytogenes) in digestates from farms, stored for later land spreading. Nine samples, including raw digestates, liquid fractions of digestate and composted digestates, were inoculated with each pathogen and maintained for 40 days at 24°C. Concentrations of pathogens were monitored using culture and qPCR methods. The persistence of L. monocytogenes, detected up to 20 days after inoculation, was higher than that of Salmonella Derby, detected for 7-20 days, and of C. coli (not detected after 7 days). In some digestates, the concentration of the pathogens by qPCR assay was several orders of magnitude higher than the concentration of culturable cells, suggesting a potential loss of culturability and induction of Viable but Non-Culturable (VBNC) state. The potential VBNC state which was generally not observed in the same digestate for the three pathogens, occurred more frequently for C. coli and L. monocytogenes than for Salmonella Derby. Composting a digestate reduced the persistence of seeded L. monocytogenes but promoted the maintenance of Salmonella Derby. The effect of NH[Formula: see text]/NH3 on the culturability of C. coli and Salmonella Derby was also shown. The loss of culturability may be the underlying mechanism for the regrowth of pathogens. We have also demonstrated the importance of using molecular tools to monitor pathogens in environmental samples since culture methods may underestimate cell concentration. Our results underline the importance of considering VBNC cells when evaluating the sanitary effect of an anaerobic digestion process and the persistence of pathogens during the storage of digestates and subsequent land spreading.
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Affiliation(s)
| | | | - Christine Ziebal
- UR OPAALEIrstea, Rennes, France
- Univ Bretagne LoireRennes, France
| | | | - Céline Druilhe
- UR OPAALEIrstea, Rennes, France
- Univ Bretagne LoireRennes, France
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49
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Cho KH, Pachepsky YA, Oliver DM, Muirhead RW, Park Y, Quilliam RS, Shelton DR. Modeling fate and transport of fecally-derived microorganisms at the watershed scale: State of the science and future opportunities. WATER RESEARCH 2016; 100:38-56. [PMID: 27176652 DOI: 10.1016/j.watres.2016.04.064] [Citation(s) in RCA: 75] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2016] [Revised: 04/27/2016] [Accepted: 04/28/2016] [Indexed: 06/05/2023]
Abstract
Natural waters serve as habitat for a wide range of microorganisms, a proportion of which may be derived from fecal material. A number of watershed models have been developed to understand and predict the fate and transport of fecal microorganisms within complex watersheds, as well as to determine whether microbial water quality standards can be satisfied under site-specific meteorological and/or management conditions. The aim of this review is to highlight and critically evaluate developments in the modeling of microbial water quality of surface waters over the last 10 years and to discuss the future of model development and application at the watershed scale, with a particular focus on fecal indicator organisms (FIOs). In doing so, an agenda of research opportunities is identified to help deliver improvements in the modeling of microbial water quality draining through complex landscape systems. This comprehensive review therefore provides a timely steer to help strengthen future modeling capability of FIOs in surface water environments and provides a useful resource to complement the development of risk management strategies to reduce microbial impairment of freshwater sources.
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Affiliation(s)
- Kyung Hwa Cho
- School of Urban and Environmental Engineering, Ulsan National Institute of Science and Technology, Ulsan, 689-798, South Korea
| | - Yakov A Pachepsky
- USDA-ARS, Environmental Microbial and Food Safety Laboratory, 10300 Baltimore Ave. Building 173, BARC-EAST, Beltsville, MD 20705, USA
| | - David M Oliver
- Biological & Environmental Sciences, University of Stirling, Stirling, FK9 4LA, UK
| | - Richard W Muirhead
- Land & Environment, AgResearch Ltd, Invermay Research Centre, Private Bag 50034, Mosgiel 9053, New Zealand
| | - Yongeun Park
- USDA-ARS, Environmental Microbial and Food Safety Laboratory, 10300 Baltimore Ave. Building 173, BARC-EAST, Beltsville, MD 20705, USA
| | - Richard S Quilliam
- Biological & Environmental Sciences, University of Stirling, Stirling, FK9 4LA, UK
| | - Daniel R Shelton
- USDA-ARS, Environmental Microbial and Food Safety Laboratory, 10300 Baltimore Ave. Building 173, BARC-EAST, Beltsville, MD 20705, USA
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50
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Haack SK, Duris JW, Kolpin DW, Focazio MJ, Meyer MT, Johnson HE, Oster RJ, Foreman WT. Contamination with bacterial zoonotic pathogen genes in U.S. streams influenced by varying types of animal agriculture. THE SCIENCE OF THE TOTAL ENVIRONMENT 2016; 563-564:340-350. [PMID: 27139306 DOI: 10.1016/j.scitotenv.2016.04.087] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2016] [Revised: 04/11/2016] [Accepted: 04/12/2016] [Indexed: 06/05/2023]
Abstract
Animal waste, stream water, and streambed sediment from 19 small (<32km(2)) watersheds in 12U.S. states having either no major animal agriculture (control, n=4), or predominantly beef (n=4), dairy (n=3), swine (n=5), or poultry (n=3) were tested for: 1) cholesterol, coprostanol, estrone, and fecal indicator bacteria (FIB) concentrations, and 2) shiga-toxin producing and enterotoxigenic Escherichia coli, Salmonella, Campylobacter, and pathogenic and vancomycin-resistant enterococci by polymerase chain reaction (PCR) on enrichments, and/or direct quantitative PCR. Pathogen genes were most frequently detected in dairy wastes, followed by beef, swine and poultry wastes in that order; there was only one detection of an animal-source-specific pathogen gene (stx1) in any water or sediment sample in any control watershed. Post-rainfall pathogen gene numbers in stream water were significantly correlated with FIB, cholesterol and coprostanol concentrations, and were most highly correlated in dairy watershed samples collected from 3 different states. Although collected across multiple states and ecoregions, animal-waste gene profiles were distinctive via discriminant analysis. Stream water gene profiles could also be discriminated by the watershed animal type. Although pathogen genes were not abundant in stream water or streambed samples, PCR on enrichments indicated that many genes were from viable organisms, including several (shiga-toxin producing or enterotoxigenic E. coli, Salmonella, vancomycin-resistant enterococci) that could potentially affect either human or animal health. Pathogen gene numbers and types in stream water samples were influenced most by animal type, by local factors such as whether animals had stream access, and by the amount of local rainfall, and not by studied watershed soil or physical characteristics. Our results indicated that stream water in small agricultural U.S. watersheds was susceptible to pathogen gene inputs under typical agricultural practices and environmental conditions. Pathogen gene profiles may offer the potential to address both source of, and risks associated with, fecal pollution.
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Affiliation(s)
- Sheridan K Haack
- U.S. Geological Survey, 6520 Mercantile Way, Suite 5, Lansing, MI 48911, United States.
| | - Joseph W Duris
- U.S. Geological Survey, 6520 Mercantile Way, Suite 5, Lansing, MI 48911, United States
| | - Dana W Kolpin
- U.S. Geological Survey, 400 South Clinton Street, Iowa City, IA 52240, United States
| | - Michael J Focazio
- U.S. Geological Survey, 12201 Sunrise Valley Drive, Reston, VA 20192, United States
| | - Michael T Meyer
- U.S. Geological Survey, 4821 Quail Crest Place, Lawrence, KS 66049, United States
| | - Heather E Johnson
- U.S. Geological Survey, 6520 Mercantile Way, Suite 5, Lansing, MI 48911, United States
| | - Ryan J Oster
- U.S. Geological Survey, 6520 Mercantile Way, Suite 5, Lansing, MI 48911, United States
| | - William T Foreman
- U.S. Geological Survey, P.O. Box 25585, Denver, CO 80225, United States
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