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For: Rubbens P, Props R. Computational Analysis of Microbial Flow Cytometry Data. mSystems 2021;6:e00895-20. [PMID: 33468704 PMCID: PMC7820666 DOI: 10.1128/msystems.00895-20] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
Number Cited by Other Article(s)
1
Conacher CG, Watson BW, Bauer FF. Gradient boosted regression as a tool to reveal key drivers of temporal dynamics in a synthetic yeast community. FEMS Microbiol Ecol 2024;100:fiae080. [PMID: 38777744 PMCID: PMC11212668 DOI: 10.1093/femsec/fiae080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Revised: 05/14/2024] [Accepted: 05/21/2024] [Indexed: 05/25/2024]  Open
2
Tang X, Wu Q, Shang L, Liu K, Ge Y, Liang P, Li B. Raman cell sorting for single-cell research. Front Bioeng Biotechnol 2024;12:1389143. [PMID: 38832129 PMCID: PMC11145634 DOI: 10.3389/fbioe.2024.1389143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 04/08/2024] [Indexed: 06/05/2024]  Open
3
Egli T, Campostrini L, Leifels M, Füchslin HP, Kolm C, Dan C, Zimmermann S, Hauss V, Guiller A, Grasso L, Shajkofci A, Farnleitner AH, Kirschner AKT. Domestic hot-water boilers harbour active thermophilic bacterial communities distinctly different from those in the cold-water supply. WATER RESEARCH 2024;253:121109. [PMID: 38377920 DOI: 10.1016/j.watres.2024.121109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2023] [Revised: 12/29/2023] [Accepted: 01/04/2024] [Indexed: 02/22/2024]
4
Peña FJ, Martín-Cano FE, Becerro-Rey L, Ortega-Ferrusola C, Gaitskell-Phillips G, da Silva-Álvarez E, Gil MC. The future of equine semen analysis. Reprod Fertil Dev 2024;36:RD23212. [PMID: 38467450 DOI: 10.1071/rd23212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2023] [Accepted: 02/15/2024] [Indexed: 03/13/2024]  Open
5
Jyoti TP, Chandel S, Singh R. Flow cytometry: Aspects and application in plant and biological science. JOURNAL OF BIOPHOTONICS 2024;17:e202300423. [PMID: 38010848 DOI: 10.1002/jbio.202300423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Accepted: 10/28/2023] [Indexed: 11/29/2023]
6
Mermans F, Mattelin V, Van den Eeckhoudt R, García-Timermans C, Van Landuyt J, Guo Y, Taurino I, Tavernier F, Kraft M, Khan H, Boon N. Opportunities in optical and electrical single-cell technologies to study microbial ecosystems. Front Microbiol 2023;14:1233705. [PMID: 37692384 PMCID: PMC10486927 DOI: 10.3389/fmicb.2023.1233705] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Accepted: 08/03/2023] [Indexed: 09/12/2023]  Open
7
Hasanin G, Mosquera AM, Emwas AH, Altmann T, Das R, Buijs PJ, Vrouwenvelder JS, Gonzalez-Gil G. The microbial growth potential of antiscalants used in seawater desalination. WATER RESEARCH 2023;233:119802. [PMID: 36871379 DOI: 10.1016/j.watres.2023.119802] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2022] [Revised: 02/10/2023] [Accepted: 02/23/2023] [Indexed: 06/18/2023]
8
Shan Y, Guo Y, Jiao W, Zeng P. Single-Cell Techniques in Environmental Microbiology. Processes (Basel) 2023. [DOI: 10.3390/pr11041109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/08/2023]  Open
9
Zhang Z, Wei Y, Peng Z, Du P, Du X, Zuo G, Wang C, Li P, Wang J, Wang R. Exploration of microbiome diversity of stacked fermented grains by flow cytometry and cell sorting. Front Microbiol 2023;14:1160552. [PMID: 37051523 PMCID: PMC10083240 DOI: 10.3389/fmicb.2023.1160552] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Accepted: 03/06/2023] [Indexed: 03/28/2023]  Open
10
Tracey H, Coates N, Hulme E, John D, Michael DR, Plummer SF. Insights into the enumeration of mixtures of probiotic bacteria by flow cytometry. BMC Microbiol 2023;23:48. [PMID: 36849905 PMCID: PMC9969615 DOI: 10.1186/s12866-023-02792-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Accepted: 02/13/2023] [Indexed: 03/01/2023]  Open
11
Pernice MC, Gasol JM. Automated flow cytometry as a tool to obtain a fine-grain picture of marine prokaryote community structure along an entire oceanographic cruise. Front Microbiol 2023;13:1064112. [PMID: 36687618 PMCID: PMC9853387 DOI: 10.3389/fmicb.2022.1064112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Accepted: 12/12/2022] [Indexed: 01/08/2023]  Open
12
Midani FS, David LA. Tracking defined microbial communities by multicolor flow cytometry reveals tradeoffs between productivity and diversity. Front Microbiol 2023;13:910390. [PMID: 36687598 PMCID: PMC9849913 DOI: 10.3389/fmicb.2022.910390] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Accepted: 11/29/2022] [Indexed: 01/07/2023]  Open
13
Free T. Investigating myeloid cells? Go with the flow. Biotechniques 2022;73:163-165. [PMID: 36205120 DOI: 10.2144/btn-2022-0099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
14
Schmiester M, Maier R, Riedel R, Durek P, Frentsch M, Kolling S, Mashreghi MF, Jenq R, Zhang L, Peterson CB, Bullinger L, Chang HD, Na IK. Flow cytometry can reliably capture gut microbial composition in healthy adults as well as dysbiosis dynamics in patients with aggressive B-cell non-Hodgkin lymphoma. Gut Microbes 2022;14:2081475. [PMID: 35634713 PMCID: PMC9154785 DOI: 10.1080/19490976.2022.2081475] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
15
El Mujtar VA, Chirdo F, Lagares A, Wall L, Tittonell P. Soil bacterial biodiversity characterization by flow cytometry: The bottleneck of cell extraction from soil. Methods Ecol Evol 2022. [DOI: 10.1111/2041-210x.13876] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
16
Recent advances in microbial community analysis from machine learning of multiparametric flow cytometry data. Curr Opin Biotechnol 2022;75:102688. [PMID: 35123235 DOI: 10.1016/j.copbio.2022.102688] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Revised: 12/09/2021] [Accepted: 01/05/2022] [Indexed: 01/06/2023]
17
Predicting the Presence and Abundance of Bacterial Taxa in Environmental Communities through Flow Cytometric Fingerprinting. mSystems 2021;6:e0055121. [PMID: 34546074 PMCID: PMC8547484 DOI: 10.1128/msystems.00551-21] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
18
Conacher CG, Luyt NA, Naidoo-Blassoples RK, Rossouw D, Setati ME, Bauer FF. The ecology of wine fermentation: a model for the study of complex microbial ecosystems. Appl Microbiol Biotechnol 2021;105:3027-3043. [PMID: 33834254 DOI: 10.1007/s00253-021-11270-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Revised: 03/30/2021] [Accepted: 04/04/2021] [Indexed: 12/11/2022]
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