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Abdelhamid SA, Abo Elsoud MM, El-Baz AF, Nofal AM, El-Banna HY. Optimisation of indole acetic acid production by Neopestalotiopsis aotearoa endophyte isolated from Thymus vulgaris and its impact on seed germination of Ocimum basilicum. BMC Biotechnol 2024; 24:46. [PMID: 38971771 PMCID: PMC11227711 DOI: 10.1186/s12896-024-00872-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Accepted: 06/21/2024] [Indexed: 07/08/2024] Open
Abstract
BACKGROUND Microbial growth during plant tissue culture is a common problem that causes significant losses in the plant micro-propagation system. Most of these endophytic microbes have the ability to propagate through horizontal and vertical transmission. On the one hand, these microbes provide a rich source of several beneficial metabolites. RESULTS The present study reports on the isolation of fungal species from different in vitro medicinal plants (i.e., Breynia disticha major, Breynia disticha, Duranta plumieri, Thymus vulgaris, Salvia officinalis, Rosmarinus officinalis, and Ocimum basilicum l) cultures. These species were tested for their indole acetic acid (IAA) production capability. The most effective species for IAA production was that isolated from Thymus vulgaris plant (11.16 µg/mL) followed by that isolated from sweet basil plant (8.78 µg/mL). On screening for maximum IAA productivity, medium, "MOS + tryptophan" was chosen that gave 18.02 μg/mL. The macroscopic, microscopic examination and the 18S rRNA sequence analysis indicated that the isolate that given code T4 was identified as Neopestalotiopsis aotearoa (T4). The production of IAA by N. aotearoa was statistically modeled using the Box-Behnken design and optimized for maximum level, reaching 63.13 µg/mL. Also, IAA extract was administered to sweet basil seeds in vitro to determine its effect on plant growth traits. All concentrations of IAA extract boosted germination parameters as compared to controls, and 100 ppm of IAA extract exhibited a significant growth promotion effect for all seed germination measurements. CONCLUSIONS The IAA produced from N. aotearoa (T4) demonstrated an essential role in the enhancement of sweet basil (Ocimum basilicum) growth, suggesting that it can be employed to promote the plant development while lowering the deleterious effect of using synthetic compounds in the environment.
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Affiliation(s)
- Sayeda A Abdelhamid
- Department of Microbial Biotechnology, National Research Centre, Cairo, Egypt.
| | | | - A F El-Baz
- Department of Industrial Biotechnology, GEBRI, University of Sadat City, Sadat City, Menofia, Egypt
| | - Ashraf M Nofal
- Department of Sustainable Development, Environmental Studies and Research Institute, University of Sadat City, Menofia, Egypt
| | - Heba Y El-Banna
- Department of Vegetable and Floriculture, Faculty of Agriculture, Mansoura University, Mansoura, Egypt
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Jabborova D, Mamarasulov B, Davranov K, Enakiev Y, Bisht N, Singh S, Stoyanov S, Garg AP. Diversity and Plant Growth Properties of Rhizospheric Bacteria Associated with Medicinal Plants. Indian J Microbiol 2024; 64:409-417. [PMID: 39010983 PMCID: PMC11246357 DOI: 10.1007/s12088-024-01275-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Accepted: 03/28/2024] [Indexed: 07/17/2024] Open
Abstract
Microbes in the rhizosphere play a significant role in the growth, development, and efficiency of plants and trees. The rhizospheric area's microbes are reliant on the soil's characteristics and the substances that the plants release. The majority of previous research on medicinal plants concentrated on their bioactive phytochemicals, but this is changing now that it is understood that a large proportion of phytotherapeutic substances are actually created by related microorganisms or through contact with their host. The roots of medicinal plants secrete a large number of secondary metabolites that determine the diversity of microbial communities in their rhizosphere. The dominant bacteria isolated from a variety of medicinal plants include various species of Bacillus, Rhizobium, Pseudomonas, Azotobacter, Burkholderia, Enterobacte, Microbacterium, Serratia, Burkholderia, and Beijerinckia. Actinobacteria also colonize the rhizosphere of medicinal plants that release low molecular weight organic solute that facilitate the solubilisation of inorganic phosphate. Root exudates of medicinal plants resist abiotic stress and accumulate in soil to produce autotoxic effects that exhibit strong obstacles to continuous cropping. Although having a vast bioresource that may be used in agriculture and modern medicine, medicinal plants' microbiomes are largely unknown. The purpose of this review is to (i) Present new insights into the plant microbiome with a focus on medicinal plants, (ii) Provide information about the components of medicinal plants derived from plants and microbes, and (iii) Discuss options for promoting plant growth and protecting plants for commercial cultivation of medicinal plants. The scientific community has paid a lot of attention to the use of rhizobacteria, particularly plant growth-promoting rhizobacteria (PGPR), as an alternative to chemical pesticides. By a variety of processes, these rhizobacteria support plant growth, manage plant pests, and foster resilience to a range of abiotic challenges. It also focuses on how PGPR inoculation affects plant growth and survival in stressful environments.
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Affiliation(s)
- Dilfuza Jabborova
- Institute of Genetics and Plant Experimental Biology, Uzbekistan Academy of Sciences, 111208 Qibray, Uzbekistan
- Faculty of Biology, National University of Uzbekistan, 100174 Tashkent, Uzbekistan
- School of Biological Engineering and Life Sciences, Shobhit Institute of Engineering and Technology (NAAC Accredited Grade 'A', Deemed to-be-University), NH-58, Modipuram, Meerut, 250110 India
| | - Bakhodir Mamarasulov
- Institute of Microbiology of the Academy of Sciences of Uzbekistan, 100128 Tashkent, Uzbekistan
| | - Kakhramon Davranov
- Institute of Microbiology of the Academy of Sciences of Uzbekistan, 100128 Tashkent, Uzbekistan
| | - Yuriy Enakiev
- Nikola Pushkarov Institute of Soil Science, Agrotechnologies and Plant Protection, Agricultural Academy, Sofia, Bulgaria
| | - Neha Bisht
- School of Biological Engineering and Life Sciences, Shobhit Institute of Engineering and Technology (NAAC Accredited Grade 'A', Deemed to-be-University), NH-58, Modipuram, Meerut, 250110 India
| | - Sachidanand Singh
- Department of Biotechnology School of Energy and Technology, Pandit Deendayal Energy University, Knowledge Corridor, Raisan Village, PDPU Rd, Gandhinagar, 382007 Gujarat India
| | - Svilen Stoyanov
- Dobrudzha College of Technology, Technical University of Varna, 9010 Varna, Bulgaria
| | - Amar P Garg
- Swami Vivekanand Subharti University, NH-58, Subhartipuram, Meerut, 250005 India
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Etesami H, Glick BR. Bacterial indole-3-acetic acid: A key regulator for plant growth, plant-microbe interactions, and agricultural adaptive resilience. Microbiol Res 2024; 281:127602. [PMID: 38228017 DOI: 10.1016/j.micres.2024.127602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 01/02/2024] [Accepted: 01/03/2024] [Indexed: 01/18/2024]
Abstract
Indole-3-acetic acid (IAA), a fundamental phytohormone categorized under auxins, not only influences plant growth and development but also plays a critical role in plant-microbe interactions. This study reviews the role of IAA in bacteria-plant communication, with a focus on its biosynthesis, regulation, and the subsequent effects on host plants. Bacteria synthesize IAA through multiple pathways, which include the indole-3-acetamide (IAM), indole-3-pyruvic acid (IPyA), and several other routes, whose full mechanisms remain to be fully elucidated. The production of bacterial IAA affects root architecture, nutrient uptake, and resistance to various abiotic stresses such as drought, salinity, and heavy metal toxicity, enhancing plant resilience and thus offering promising routes to sustainable agriculture. Bacterial IAA synthesis is regulated through complex gene networks responsive to environmental cues, impacting plant hormonal balances and symbiotic relationships. Pathogenic bacteria have adapted mechanisms to manipulate the host's IAA dynamics, influencing disease outcomes. On the other hand, beneficial bacteria utilize IAA to promote plant growth and mitigate abiotic stresses, thereby enhancing nutrient use efficiency and reducing dependency on chemical fertilizers. Advancements in analytical methods, such as liquid chromatography-tandem mass spectrometry, have improved the quantification of bacterial IAA, enabling accurate measurement and analysis. Future research focusing on molecular interactions between IAA-producing bacteria and host plants could facilitate the development of biotechnological applications that integrate beneficial bacteria to improve crop performance, which is essential for addressing the challenges posed by climate change and ensuring global food security. This integration of bacterial IAA producers into agricultural practice promises to revolutionize crop management strategies by enhancing growth, fostering resilience, and reducing environmental impact.
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Affiliation(s)
- Hassan Etesami
- Soil Science Department, University of Tehran, Tehran, Iran.
| | - Bernard R Glick
- Department of Biology, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
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Tsavkelova EA, Volynchikova EA, Potekhina NV, Lavrov KV, Avtukh AN. Auxin production and plant growth promotion by Microbacterium albopurpureum sp. nov. from the rhizoplane of leafless Chiloschista parishii Seidenf. orchid. FRONTIERS IN PLANT SCIENCE 2024; 15:1360828. [PMID: 38559760 PMCID: PMC10978784 DOI: 10.3389/fpls.2024.1360828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/24/2023] [Accepted: 02/14/2024] [Indexed: 04/04/2024]
Abstract
The strains of the genus Microbacterium, with more than 150 species, inhabit diverse environments; plant-associated bacteria reveal their plant growth-promoting activities due to a number of beneficial characteristics. Through the performance of diverse techniques and methods, including isolation of a novel Microbacterium strain from the aerial roots of leafless epiphytic orchid, Chiloschista parishii Seidenf., its morphological and biochemical characterization, chemotaxonomy, phylogenetic and genome analysis, as well as bioassays and estimation of its auxin production capacity, a novel strain of ET2T is described. Despite that it shared 16S rRNA gene sequence similarity of 99.79% with Microbacterium kunmingense JXJ CY 27-2T, so they formed a monophyletic group on phylogenetic trees, the two strains showed clear divergence of their genome sequences. The average nucleotide identity (ANI), average amino acid identity (AAI) and digital DNA-DNA hybridization (dDDH) values of ET2T differed greatly from phylogenetically close JXJ CY 27-2T. Based on the differences being below the threshold for species similarity, together with the unique chemotaxonomic characteristics, strain ET2T represents a novel species of the genus Microbacterium. Several genes, putatively involved in auxin biosynthesis were predicted. This strain revealed obvious plant growth-promoting activities, including diazotrophy and biosynthesis of tryptophan-dependent auxins (indole-3-acetic and indole-3-pyruvic acids). Microbial auxins directly stimulated the rhizogenesis, so that the ET2T-inoculated seeds of wheat, cucumber and garden cress showed evident promotion in their growth and development, both under optimal and under cold stress conditions. Based on phenotypic, chemotypic and genotypic evidences, the strain ET2T belongs to the genus Microbacterium, order Micrococcales, class Actinomycetes, and it represents a novel species, for which the name Microbacterium albopurpureum sp. nov. is proposed, with strain ET2T (VKPM Ac-2212, VKM Ас-2998) as the type strain.
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Affiliation(s)
- Elena A. Tsavkelova
- Department of Biology, Shenzhen Moscow State University and Beijing Institute of Technology (MSU-BIT) University, Shenzhen, Guangdong, China
- Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia
| | | | | | - Konstantin V. Lavrov
- Genomic Center of National Research Centre (NRC) “Kurchatov Institute”, Moscow, Russia
| | - Alexander N. Avtukh
- Skryabin Institute of Biochemistry and Physiology of Microorganisms, Pushchino Scientific Center for Biological Research, Russian Academy of Sciences, Pushchino, Russia
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Ayala Zepeda M, Valenzuela Ruiz V, Parra Cota FI, Chinchilla-Soto C, de la Cruz Torres E, Ibba MI, Estrada Alvarado MI, de los Santos Villalobos S. Genomic insights of a native bacterial consortium for wheat production sustainability. CURRENT RESEARCH IN MICROBIAL SCIENCES 2024; 6:100230. [PMID: 39026603 PMCID: PMC11256204 DOI: 10.1016/j.crmicr.2024.100230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/20/2024] Open
Abstract
The use of plant growth-promoting bacteria as bioinoculants is a powerful tool to increase crop yield and quality and to improve nitrogen use efficiency (NUE) from fertilizers in plants. This study aimed to bioprospecting a native bacterial consortium (Bacillus cabrialesii subsp. cabrialesii TE3T, Priestia megaterium TRQ8, and Bacillus paralicheniformis TRQ65), through bioinformatic analysis, and to quantify the impact of its inoculation on NUE (measured through 15N-isotopic techniques), grain yield, and grain quality of durum wheat variety CIRNO C2008 grown under three doses of urea (0, 120, and 240 kg N ha-1) during two consecutive agricultural cycles in the Yaqui Valley, Mexico. The inoculation of the bacterial consortium (BC) to the wheat crop, at a total N concentration of 123-225 kg N ha-1 increased crop productivity and maintained grain quality, resulting in a yield increase of 1.1 ton ha-1 (6.0 vs. 7.1 ton ha-1, 0 kg N ha-1 added, 123 kg N ha-1 in the soil) and of 2.0 ton ha-1 (5.9 vs. 7.9 ton ha-1, 120 kg N ha-1 added, 104 kg N ha-1 in the soil) compared to the uninoculated controls at the same doses of N. The genomic bioinformatic analysis of the studied strains showed a great number of biofertilization-related genes regarding N and Fe acquisition, P assimilation, CO2 fixation, Fe, P, and K solubilization, with important roles in agroecosystems, as well as genes related to the production of siderophores and stress response. A positive effect of the BC on NUE at the studied initial N content (123 and 104 kg N ha-1) was not observed. Nevertheless, increases of 14 % and 12.5 % on NUE (whole plant) were observed when 120 kg N ha-1 was applied compared to when wheat was fully fertilized (240 kg N ha-1). This work represents a link between bioinformatic approaches of a native bacterial inoculant and the quantification of its impact on durum wheat.
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Affiliation(s)
- Marisol Ayala Zepeda
- Departamento de Ciencias Agronómicas y Veterinarias, Instituto Tecnológico de Sonora ITSON, Obregón, 85000, Mexico
| | - Valeria Valenzuela Ruiz
- Departamento de Ciencias Agronómicas y Veterinarias, Instituto Tecnológico de Sonora ITSON, Obregón, 85000, Mexico
| | - Fannie Isela Parra Cota
- Campo Experimental Norman E. Borlaug, Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias INIFAP, Obregón, 85000, Mexico
| | - Cristina Chinchilla-Soto
- Centro de Investigación en Contaminación Ambiental, Universidad de Costa Rica UCR, San José, 11501-2060, Costa Rica
| | - Eulogio de la Cruz Torres
- Departamento de Biología, Instituto Nacional de Investigaciones Nucleares ININ, Ocoyoacac, 52750, Mexico
| | - María Itria Ibba
- Centro Internacional de Mejoramiento de Maíz y de Trigo CIMMYT, Texcoco, 56237, Mexico
| | - María Isabel Estrada Alvarado
- Departamento de Biotecnología y Ciencias Alimentarias, Instituto Tecnológico de Sonora ITSON, Obregón, 85000, Mexico
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Choix FJ, Palacios OA, Mondragón-Cortez P, Ocampo-Alvarez H, Becerril-Espinosa A, Lara-González MA, Juárez-Carrillo E. Synergic association of the consortium Arthrospira maxima with the microalga growth-promoting bacterium Azospirillum cultured under the stressful biogas composition. Bioprocess Biosyst Eng 2024; 47:181-193. [PMID: 38231212 DOI: 10.1007/s00449-023-02947-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Accepted: 11/12/2023] [Indexed: 01/18/2024]
Abstract
The present study evaluates the association of the blue-green microalga Arthrospira maxima (Spirulina), which is known for its CO2 fixation, biomass, and high-value metabolite production, with the microalga growth-promoting bacterium Azospirillum brasilense under the stressful composition of biogas. The results demonstrated that A. maxima co-cultured with A. brasilense under the high CO2 (25%) and methane (CH4; 75%) concentrations of biogas recorded a CO2 fixation rate of 0.24 ± 0.03 g L-1 days-1, thereby attaining a biomass production of 1.8 ± 0.03 g L-1. Similarly, the biochemical composition quality of this microalga enhanced the attainment of higher contents of carbohydrates, proteins, and phycocyanin than cultured alone. However, metabolites other than tryptophan (Trp) and indole-3-acetic acid could have supported this beneficial interaction. Overall, the results demonstrate that this prokaryotic consortium of A. maxima-A. brasilense established a synergic association under biogas, which represents a sustainable strategy to improve the bio-refinery capacity of this microalga and increase the usefulness of A. brasilense in multiple economic sectors.
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Affiliation(s)
- Francisco J Choix
- CONAHCYT - Facultad de Ciencias Químicas, Universidad Autónoma de Chihuahua, Circuito Universitario S/N, C.P. 31125, Chihuahua, Chihuahua, México.
| | - Oskar A Palacios
- Facultad de Ciencias Químicas, Universidad Autónoma de Chihuahua, Circuito Universitario S/N, C.P. 31125, Chihuahua, Chihuahua, México
| | - Pedro Mondragón-Cortez
- Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco A.C, Camino Arenero 1227, C.P. 45019, Zapopan, Jalisco, México
| | - Héctor Ocampo-Alvarez
- Departamento de Ecología, CUCBA-Universidad de Guadalajara, Ramón Padilla Sánchez 2100, C.P. 45200, Zapopan, Jalisco, México
| | - Amayaly Becerril-Espinosa
- CONAHCYT - Departamento de Ecología, CUCBA-Universidad de Guadalajara, Ramón Padilla Sánchez 2100, C.P. 45200, Zapopan, Jalisco, México
| | - Martha A Lara-González
- Departamento de Ecología, CUCBA-Universidad de Guadalajara, Ramón Padilla Sánchez 2100, C.P. 45200, Zapopan, Jalisco, México
| | - Eduardo Juárez-Carrillo
- Departamento de Ecología, CUCBA-Universidad de Guadalajara, Ramón Padilla Sánchez 2100, C.P. 45200, Zapopan, Jalisco, México
- Instituto de Limnología, CUCBA-Universidad de Guadalajara, Paseo de la Loma 22, C.P. 45920, Ajijic, Jalisco, México
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Al-Elwany OAAI, Mohamed AMHA, Abdelbaky AS, Tammam MA, Hemida KA, Hassan GHS, El-Saadony MT, El-Tarabily KA, AbuQamar SF, Abd El-Mageed TA. Application of bio-organic amendments improves soil quality and yield of fennel (Foeniculum vulgare Mill.) plants in saline calcareous soil. Sci Rep 2023; 13:19876. [PMID: 37963917 PMCID: PMC10646079 DOI: 10.1038/s41598-023-45780-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Accepted: 10/24/2023] [Indexed: 11/16/2023] Open
Abstract
The impact of bio-organic amendments on crop production is poorly understood in saline calcareous soils. The aim in the present study was to determine the effects of the application of organic manure along with lactic acid bacteria (LAB) on soil quality, and morpho-physio-biochemical responses, seed yield (SY) and essential oil yield (EOY) of fennel plants (Foeniculum vulgare Mill.) grown in saline calcareous soils. Eight treatments of farmyard manure (FM) or poultry manure (PM) individually or combined with Lactobacillus plantarum (Lp) and/or Lactococcus lactis (Ll) were applied to saline calcareous soil in two growing seasons. Either FM or PM combined with LAB had beneficial effects on lowering ECe, pH and bulk density and increasing total porosity, organic matter, and water and nutrient retention capacities in addition to total bacterial population in the soil. Growth, nutrient uptake, SY and EOY of plants were also enhanced when fennel seeds were inoculated with Lp and/or Ll and the soil was amended with any of the organic manures under unfavorable conditions. Compared to control (no bio-organic amendments), FM + Lp + Lt or PM + Lp + Lt treatment signficantlly (P ≤ 0.05) increased plant height by 86.2 or 65.0%, total chlorophyll by 73 or 50%, proline by 35 or 45%, glutathione by 100 or 138%, SY by 625 or 463% and EOY by 300 or 335%, respectively, in fennel plants. Co-application of the naturally occurring microorganisms (i.e., LAB) and organically-derived, nutrient-rich fertilizer (i.e., FM or PM) is recommended to improve yield of fennel plants in saline calcareous soils.
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Affiliation(s)
- Omar A A I Al-Elwany
- Department of Horticulture, Faculty of Agriculture, Fayoum University, Fayoum, 63514, Egypt
| | - Abir M H A Mohamed
- Department of Agricultural Microbiology, Faculty of Agriculture, Fayoum University, Fayoum, 63514, Egypt
| | - Ahmed S Abdelbaky
- Department of Biochemistry, Faculty of Agriculture, Fayoum University, Fayoum, 63514, Egypt
| | - Mohamed A Tammam
- Department of Biochemistry, Faculty of Agriculture, Fayoum University, Fayoum, 63514, Egypt
| | - Khaulood A Hemida
- Department of Botany, Faculty of Science, Fayoum University, Fayoum, 63514, Egypt
| | - Gehad H S Hassan
- Department of Agricultural Microbiology, Faculty of Agriculture, Fayoum University, Fayoum, 63514, Egypt
| | - Mohamed T El-Saadony
- Department of Agricultural Microbiology, Faculty of Agriculture, Zagazig University, Zagazig, 44511, Egypt
| | - Khaled A El-Tarabily
- Department of Biology, College of Science, United Arab Emirates University, Al Ain, 15551, United Arab Emirates.
| | - Synan F AbuQamar
- Department of Biology, College of Science, United Arab Emirates University, Al Ain, 15551, United Arab Emirates.
| | - Taia A Abd El-Mageed
- Department of Soil and Water, Faculty of Agriculture, Fayoum University, Fayoum, 63514, Egypt
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de Souza AES, Filla VA, da Silva JPM, Barbosa Júnior MR, de Oliveira-Paiva CA, Coelho AP, Lemos LB. Application of Bacillus spp. Phosphate-Solubilizing Bacteria Improves Common Bean Production Compared to Conventional Fertilization. PLANTS (BASEL, SWITZERLAND) 2023; 12:3827. [PMID: 38005724 PMCID: PMC10675661 DOI: 10.3390/plants12223827] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Revised: 10/08/2023] [Accepted: 10/13/2023] [Indexed: 11/26/2023]
Abstract
The use of phosphate-solubilizing bacteria (PSB) can be a sustainable strategy to increase phosphorus availability and promote satisfactory crop yields. The objective of this study was to evaluate whether inoculation with PSB in common bean increases (i) growth, (ii) nutrition, (iii) yield, and (iv) grain quality, and (v) reduces the chemical phosphorus application dose to obtain maximum yields. The experiment was conducted in an Oxisol using a randomized block design in a 4 × 4 factorial scheme, with four replicates, using the cultivar IAC 2051. The first factor was four doses of P2O5 (0, 20, 40 and 60 kg ha-1), and the second factor was four doses of PSB (0, 100, 200 and 300 mL ha-1). For leaf area and leaf chlorophyll content, the association of PSB inoculation with a P2O5 dose of 40 kg ha-1 promoted the best conditions for the common bean. P2O5 application increased yield by 79 kg ha-1 for each 10 kg ha-1 added. PSB inoculation at a dose of 192 mL ha-1 promoted P export of 15.3 kg ha-1, and the PSB dose of 159 mL ha-1 increased yield by 389 kg ha-1 (12%) compared to the control. Grain quality remained within the standards required by the consumer market, being little affected by the treatments. Improvements in common bean growth and nutritional and physiological status promoted by P2O5 application and PSB were essential in increasing yield, so these are sustainable production strategies.
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Affiliation(s)
- Antonia Erica Santos de Souza
- School of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Jaboticabal 14884-900, SP, Brazil; (A.E.S.d.S.); (V.A.F.); (J.P.M.d.S.); (M.R.B.J.); (L.B.L.)
| | - Vinicius Augusto Filla
- School of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Jaboticabal 14884-900, SP, Brazil; (A.E.S.d.S.); (V.A.F.); (J.P.M.d.S.); (M.R.B.J.); (L.B.L.)
| | - João Paulo Morais da Silva
- School of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Jaboticabal 14884-900, SP, Brazil; (A.E.S.d.S.); (V.A.F.); (J.P.M.d.S.); (M.R.B.J.); (L.B.L.)
| | - Marcelo Rodrigues Barbosa Júnior
- School of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Jaboticabal 14884-900, SP, Brazil; (A.E.S.d.S.); (V.A.F.); (J.P.M.d.S.); (M.R.B.J.); (L.B.L.)
| | | | - Anderson Prates Coelho
- School of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Jaboticabal 14884-900, SP, Brazil; (A.E.S.d.S.); (V.A.F.); (J.P.M.d.S.); (M.R.B.J.); (L.B.L.)
| | - Leandro Borges Lemos
- School of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Jaboticabal 14884-900, SP, Brazil; (A.E.S.d.S.); (V.A.F.); (J.P.M.d.S.); (M.R.B.J.); (L.B.L.)
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Ahmed T, Noman M, Qi Y, Shahid M, Hussain S, Masood HA, Xu L, Ali HM, Negm S, El-Kott AF, Yao Y, Qi X, Li B. Fertilization of Microbial Composts: A Technology for Improving Stress Resilience in Plants. PLANTS (BASEL, SWITZERLAND) 2023; 12:3550. [PMID: 37896014 PMCID: PMC10609736 DOI: 10.3390/plants12203550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 09/28/2023] [Accepted: 10/09/2023] [Indexed: 10/29/2023]
Abstract
Microbial compost plays a crucial role in improving soil health, soil fertility, and plant biomass. These biofertilizers, based on microorganisms, offer numerous benefits such as enhanced nutrient acquisition (N, P, and K), production of hydrogen cyanide (HCN), and control of pathogens through induced systematic resistance. Additionally, they promote the production of phytohormones, siderophore, vitamins, protective enzymes, and antibiotics, further contributing to soil sustainability and optimal agricultural productivity. The escalating generation of organic waste from farm operations poses significant threats to the environment and soil fertility. Simultaneously, the excessive utilization of chemical fertilizers to achieve high crop yields results in detrimental impacts on soil structure and fertility. To address these challenges, a sustainable agriculture system that ensures enhanced soil fertility and minimal ecological impact is imperative. Microbial composts, developed by incorporating characterized plant-growth-promoting bacteria or fungal strains into compost derived from agricultural waste, offer a promising solution. These biofertilizers, with selected microbial strains capable of thriving in compost, offer an eco-friendly, cost-effective, and sustainable alternative for agricultural practices. In this review article, we explore the potential of microbial composts as a viable strategy for improving plant growth and environmental safety. By harnessing the benefits of microorganisms in compost, we can pave the way for sustainable agriculture and foster a healthier relationship between soil, plants, and the environment.
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Affiliation(s)
- Temoor Ahmed
- Xianghu Laboratory, Hangzhou 311231, China; (T.A.)
- Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China;
| | - Muhammad Noman
- Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China;
| | - Yetong Qi
- Xianghu Laboratory, Hangzhou 311231, China; (T.A.)
| | - Muhammad Shahid
- Department of Bioinformatics and Biotechnology, Government College University, Faisalabad 38000, Pakistan;
| | - Sabir Hussain
- Department of Environmental Sciences, Government College University, Faisalabad 38040, Pakistan;
| | - Hafiza Ayesha Masood
- Department of Plant Breeding and Genetics, University of Agriculture, Faisalabad 38000, Pakistan
- MEU Research Unit, Middle East University, Amman 11831, Jordan
| | - Lihui Xu
- Institute of Eco-Environmental Protection, Shanghai Academy of Agricultural Sciences, Shanghai 201403, China;
| | - Hayssam M. Ali
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia;
| | - Sally Negm
- Department of Life Sciences, College of Science and Art Mahyel Aseer, King Khalid University, Abha 62529, Saudi Arabia;
| | - Attalla F. El-Kott
- Department of Biology, College of Science, King Khalid University, Abha 61421, Saudi Arabia
| | - Yanlai Yao
- Xianghu Laboratory, Hangzhou 311231, China; (T.A.)
| | - Xingjiang Qi
- Xianghu Laboratory, Hangzhou 311231, China; (T.A.)
| | - Bin Li
- Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China;
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10
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Rostami M, Karegar A, Taghavi SM, Ghasemi-Fasaei R, Ghorbani A. Effective combination of arugula vermicompost, chitin and inhibitory bacteria for suppression of the root-knot nematode Meloidogyne javanica and explanation of their beneficial properties based on microbial analysis. PLoS One 2023; 18:e0289935. [PMID: 37585451 PMCID: PMC10431669 DOI: 10.1371/journal.pone.0289935] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Accepted: 07/28/2023] [Indexed: 08/18/2023] Open
Abstract
Root-knot nematodes (Meloidogyne spp.) are dangerous parasites of many crops worldwide. The threat of chemical nematicides has led to increasing interest in studying the inhibitory effects of organic amendments and bacteria on plant-parasitic nematodes, but their combination has been less studied. One laboratory and four glasshouse experiments were conducted to study the effect on M. javanica of animal manure, common vermicompost, shrimp shells, chitosan, compost and vermicompost from castor bean, chinaberry and arugula, and the combination of arugula vermicompost with some bacteria, isolated from vermicompost or earthworms. The extract of arugula compost and vermicompost, common vermicompost and composts from castor bean and chinaberry reduced nematode egg hatch by 12-32% and caused 13-40% mortality of second-stage juveniles in vitro. Soil amendments with the combination vermicompost of arugula + Pseudomonas. resinovorans + Sphingobacterium daejeonense + chitosan significantly increased the yield of infected tomato plants and reduced nematode reproduction factor by 63.1-76.6%. Comparison of chemical properties showed that arugula vermicompost had lower pH, EC, and C/N ratio than arugula compost. Metagenomics analysis showed that Bacillus, Geodermatophilus, Thermomonas, Lewinella, Pseudolabrys and Erythrobacter were the major bacterial genera in the vermicompost of arugula. Metagenomics analysis confirmed the presence of chitinolytic, detoxifying and PGPR bacteria in the vermicompost of arugula. The combination of arugula vermicompost + chitosan + P. resinovorans + S. daejeonense could be an environmentally friendly approach to control M. javanica.
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Affiliation(s)
- Mahsa Rostami
- Department of Plant Protection, School of Agriculture, Shiraz University, Shiraz, Iran
| | - Akbar Karegar
- Department of Plant Protection, School of Agriculture, Shiraz University, Shiraz, Iran
| | - S. Mohsen Taghavi
- Department of Plant Protection, School of Agriculture, Shiraz University, Shiraz, Iran
| | - Reza Ghasemi-Fasaei
- Department of Soil Science, School of Agriculture, Shiraz University, Shiraz, Iran
| | - Abozar Ghorbani
- Plant Virology Research Centre, School of Agriculture, Shiraz University, Shiraz, Iran
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11
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Tang J, Li Y, Zhang L, Mu J, Jiang Y, Fu H, Zhang Y, Cui H, Yu X, Ye Z. Biosynthetic Pathways and Functions of Indole-3-Acetic Acid in Microorganisms. Microorganisms 2023; 11:2077. [PMID: 37630637 PMCID: PMC10459833 DOI: 10.3390/microorganisms11082077] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Revised: 08/08/2023] [Accepted: 08/10/2023] [Indexed: 08/27/2023] Open
Abstract
Indole-3-acetic acid (IAA) belongs to the family of auxin indole derivatives. IAA regulates almost all aspects of plant growth and development, and is one of the most important plant hormones. In microorganisms too, IAA plays an important role in growth, development, and even plant interaction. Therefore, mechanism studies on the biosynthesis and functions of IAA in microorganisms can promote the production and utilization of IAA in agriculture. This mini-review mainly summarizes the biosynthesis pathways that have been reported in microorganisms, including the indole-3-acetamide pathway, indole-3-pyruvate pathway, tryptamine pathway, indole-3-acetonitrile pathway, tryptophan side chain oxidase pathway, and non-tryptophan dependent pathway. Some pathways interact with each other through common key genes to constitute a network of IAA biosynthesis. In addition, functional studies of IAA in microorganisms, divided into three categories, have also been summarized: the effects on microorganisms, the virulence on plants, and the beneficial impacts on plants.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | - Zihong Ye
- Zhejiang Provincial Key Laboratory of Biometrology and Inspection & Quarantine, College of Life Sciences, China Jiliang University, Hangzhou 310018, China; (J.T.); (L.Z.)
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12
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Mazoyon C, Hirel B, Pecourt A, Catterou M, Gutierrez L, Sarazin V, Dubois F, Duclercq J. Sphingomonas sediminicola Is an Endosymbiotic Bacterium Able to Induce the Formation of Root Nodules in Pea ( Pisum sativum L.) and to Enhance Plant Biomass Production. Microorganisms 2023; 11:microorganisms11010199. [PMID: 36677491 PMCID: PMC9861922 DOI: 10.3390/microorganisms11010199] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Revised: 01/09/2023] [Accepted: 01/10/2023] [Indexed: 01/13/2023] Open
Abstract
The application of bacterial bio-inputs is a very attractive alternative to the use of mineral fertilisers. In ploughed soils including a crop rotation pea, we observed an enrichment of bacterial communities with Sphingomonas (S.) sediminicola. Inoculation experiments, cytological studies, and de novo sequencing were used to investigate the beneficial role of S. sediminicola in pea. S. sediminicola is able to colonise pea plants and establish a symbiotic association that promotes plant biomass production. Sequencing of the S. sediminicola genome revealed the existence of genes involved in secretion systems, Nod factor synthesis, and nitrogenase activity. Light and electron microscopic observations allowed us to refine the different steps involved in the establishment of the symbiotic association, including the formation of infection threads, the entry of the bacteria into the root cells, and the development of differentiated bacteroids in root nodules. These results, together with phylogenetic analysis, demonstrated that S. sediminicola is a non-rhizobia that has the potential to develop a beneficial symbiotic association with a legume. Such a symbiotic association could be a promising alternative for the development of more sustainable agricultural practices, especially under reduced N fertilisation conditions.
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Affiliation(s)
- Candice Mazoyon
- Unité Ecologie et Dynamique des Systèmes Anthropisés (EDYSAN, UMR7058 CNRS), Université de Picardie Jules Verne (UPJV), 80000 Amiens, France
| | - Bertrand Hirel
- Unité Mixte de Recherche 1318 INRA-AgroParisTech, Institut Jean-Pierre Bourgin, Institut National de la Recherche Agronomique et de l'Environnement (INRAE), 78026 Versailles, France
| | - Audrey Pecourt
- Unité Ecologie et Dynamique des Systèmes Anthropisés (EDYSAN, UMR7058 CNRS), Université de Picardie Jules Verne (UPJV), 80000 Amiens, France
| | - Manuella Catterou
- Unité Ecologie et Dynamique des Systèmes Anthropisés (EDYSAN, UMR7058 CNRS), Université de Picardie Jules Verne (UPJV), 80000 Amiens, France
| | - Laurent Gutierrez
- Centre de Ressources Régionales en Biologie Moléculaire (CRRBM), Université de Picardie Jules Verne (UPJV), 80000 Amiens, France
| | | | - Fréderic Dubois
- Unité Ecologie et Dynamique des Systèmes Anthropisés (EDYSAN, UMR7058 CNRS), Université de Picardie Jules Verne (UPJV), 80000 Amiens, France
| | - Jérôme Duclercq
- Unité Ecologie et Dynamique des Systèmes Anthropisés (EDYSAN, UMR7058 CNRS), Université de Picardie Jules Verne (UPJV), 80000 Amiens, France
- Correspondence: ; Tel.: +33-3-22827612
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13
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Hodgson RJ, Liddicoat C, Cando‐Dumancela C, Blyth C, Watson CD, Breed MF. Local and non‐local soil microbiota impede germination of the endangered
Acacia whibleyana. AUSTRAL ECOL 2023. [DOI: 10.1111/aec.13275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Riley J. Hodgson
- College of Science and Engineering Flinders University Bedford Park South Australia Australia
| | - Craig Liddicoat
- College of Science and Engineering Flinders University Bedford Park South Australia Australia
- School of Public Health University of Adelaide Adelaide South Australia Australia
| | | | - Colette Blyth
- School of Biological Sciences University of Adelaide Adelaide South Australia Australia
| | - Carl D. Watson
- College of Science and Engineering Flinders University Bedford Park South Australia Australia
| | - Martin F. Breed
- College of Science and Engineering Flinders University Bedford Park South Australia Australia
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14
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Morcillo RJL, Baroja-Fernández E, López-Serrano L, Leal-López J, Muñoz FJ, Bahaji A, Férez-Gómez A, Pozueta-Romero J. Cell-free microbial culture filtrates as candidate biostimulants to enhance plant growth and yield and activate soil- and plant-associated beneficial microbiota. FRONTIERS IN PLANT SCIENCE 2022; 13:1040515. [PMID: 36618653 PMCID: PMC9816334 DOI: 10.3389/fpls.2022.1040515] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Accepted: 12/05/2022] [Indexed: 06/12/2023]
Abstract
In this work we compiled information on current and emerging microbial-based fertilization practices, especially the use of cell-free microbial culture filtrates (CFs), to promote plant growth, yield and stress tolerance, and their effects on plant-associated beneficial microbiota. In addition, we identified limitations to bring microbial CFs to the market as biostimulants. In nature, plants act as metaorganisms, hosting microorganisms that communicate with the plants by exchanging semiochemicals through the phytosphere. Such symbiotic interactions are of high importance not only for plant yield and quality, but also for functioning of the soil microbiota. One environmentally sustainable practice to increasing crop productivity and/or protecting plants from (a)biotic stresses while reducing the excessive and inappropriate application of agrochemicals is based on the use of inoculants of beneficial microorganisms. However, this technology has a number of limitations, including inconsistencies in the field, specific growth requirements and host compatibility. Beneficial microorganisms release diffusible substances that promote plant growth and enhance yield and stress tolerance. Recently, evidence has been provided that this capacity also extends to phytopathogens. Consistently, soil application of microbial cell-free culture filtrates (CFs) has been found to promote growth and enhance the yield of horticultural crops. Recent studies have shown that the response of plants to soil application of microbial CFs is associated with strong proliferation of the resident beneficial soil microbiota. Therefore, the use of microbial CFs to enhance both crop yield and stress tolerance, and to activate beneficial soil microbiota could be a safe, efficient and environmentally friendly approach to minimize shortfalls related to the technology of microbial inoculation. In this review, we compile information on microbial CFs and the main constituents (especially volatile compounds) that promote plant growth, yield and stress tolerance, and their effects on plant-associated beneficial microbiota. In addition, we identify challenges and limitations for their use as biostimulants to bring them to the market and we propose remedial actions and give suggestions for future work.
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Affiliation(s)
- Rafael Jorge León Morcillo
- Institute for Mediterranean and Subtropical Horticulture “La Mayora” (IHSM), Consejo Superior de Investigaciones Científicas-Universidad de Málaga, Málaga, Spain
| | - Edurne Baroja-Fernández
- Instituto de Agrobiotecnología (IdAB), Consejo Superior de Investigaciones Científicas-Gobierno de Navarra, Nafarroa, Spain
| | - Lidia López-Serrano
- Institute for Mediterranean and Subtropical Horticulture “La Mayora” (IHSM), Consejo Superior de Investigaciones Científicas-Universidad de Málaga, Málaga, Spain
| | - Jesús Leal-López
- Institute for Mediterranean and Subtropical Horticulture “La Mayora” (IHSM), Consejo Superior de Investigaciones Científicas-Universidad de Málaga, Málaga, Spain
| | - Francisco José Muñoz
- Instituto de Agrobiotecnología (IdAB), Consejo Superior de Investigaciones Científicas-Gobierno de Navarra, Nafarroa, Spain
| | - Abdellatif Bahaji
- Instituto de Agrobiotecnología (IdAB), Consejo Superior de Investigaciones Científicas-Gobierno de Navarra, Nafarroa, Spain
| | - Alberto Férez-Gómez
- Institute for Mediterranean and Subtropical Horticulture “La Mayora” (IHSM), Consejo Superior de Investigaciones Científicas-Universidad de Málaga, Málaga, Spain
| | - Javier Pozueta-Romero
- Institute for Mediterranean and Subtropical Horticulture “La Mayora” (IHSM), Consejo Superior de Investigaciones Científicas-Universidad de Málaga, Málaga, Spain
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15
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Kaczor M, Bulak P, Proc-Pietrycha K, Kirichenko-Babko M, Bieganowski A. The Variety of Applications of Hermetia illucens in Industrial and Agricultural Areas-Review. BIOLOGY 2022; 12:25. [PMID: 36671718 PMCID: PMC9855018 DOI: 10.3390/biology12010025] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Revised: 12/14/2022] [Accepted: 12/16/2022] [Indexed: 12/25/2022]
Abstract
Hermetia illucens (Diptera: Stratiomyidae, Linnaeus, 1978), commonly known as the black soldier fly (BSF), is a saprophytic insect, which in recent years has attracted significant attention from both the scientific community and industry. The unrestrained appetite of the larvae, the ability to forage on various organic waste, and the rapid growth and low environmental impact of its breeding has made it one of the insect species bred on an industrial scale, in the hope of producing fodder or other ingredients for various animals. The variety of research related to this insect has shown that feed production is not the only benefit of its use. H. illucens has many features and properties that could be of interest from the point of view of many other industries. Biomass utilization, chitin and chitosan source, biogas, and biodiesel production, entomoremediation, the antimicrobial properties of its peptides, and the fertilizer potential of its wastes, are just some of its potential uses. This review brings together the work of four years of study into H. illucens. It summarizes the current state of knowledge and introduces the characteristics of this insect that may be helpful in managing its breeding, as well as its use in agro-industrial fields. Knowledge gaps and under-studied areas were also highlighted, which could help identify future research directions.
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Affiliation(s)
- Monika Kaczor
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290 Lublin, Poland
| | - Piotr Bulak
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290 Lublin, Poland
| | - Kinga Proc-Pietrycha
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290 Lublin, Poland
| | - Marina Kirichenko-Babko
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290 Lublin, Poland
- Schmalhausen Institute of Zoology, National Academy of Sciences of Ukraine, B. Khmelnitsky 15, 01030 Kyiv, Ukraine
| | - Andrzej Bieganowski
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290 Lublin, Poland
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16
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Soil microbiome disruption reveals specific and general plant-bacterial relationships in three agroecosystem soils. PLoS One 2022; 17:e0277529. [PMID: 36383522 PMCID: PMC9668122 DOI: 10.1371/journal.pone.0277529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Accepted: 10/28/2022] [Indexed: 11/17/2022] Open
Abstract
Soil microbiome disruption methods are regularly used to reduce populations of microbial pathogens, often resulting in increased crop growth. However, little is known about the effect of soil microbiome disruption on non-pathogenic members of the soil microbiome. Here, we applied soil microbiome disruption in the form of moist-heat sterilization (autoclaving) to reduce populations of naturally occurring soil microbiota. The disruption was applied to analyze bacterial community rearrangement mediated by four crops (corn, beet, lettuce, and tomato) grown in three historically distinct agroecosystem soils (conventional, organic, and diseased). Applying the soil disruption enhanced plant influence on rhizosphere bacterial colonization, and significantly different bacterial communities were detected between the tested crops. Furthermore, bacterial genera showed significant abundance increases in ways both unique-to and shared-by each tested crop. As an example, corn uniquely promoted abundances of Pseudomonas and Sporocytophaga, regardless of the disrupted soil in which it was grown. Whereas the promotion of Bosea, Dyadobacter and Luteoliobacter was shared by all four crops when grown in disrupted soils. In summary, soil disruption followed by crop introduction amplified the plant colonization of potential beneficial bacterial genera in the rhizosphere.
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17
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Diversity of Endophytic Yeasts from Agricultural Fruits Positive for Phytohormone IAA Production. BIOTECH 2022; 11:biotech11030038. [PMID: 36134912 PMCID: PMC9497158 DOI: 10.3390/biotech11030038] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Revised: 08/20/2022] [Accepted: 08/21/2022] [Indexed: 11/23/2022] Open
Abstract
This study reports the diversity of cultivable endophytic yeasts from agricultural fruits that respond positively to the plant-promoting property of indole-3-acetic acid (IAA) production. The IAA synthesis by the strains was quantified with an Agilent 1100 series liquid chromatography system. IAA was present in the culture liquid of 72% of all 97 strains examined after three days of cultivation. The most active endophytic yeast strains in this study belonged to the species Aureobasidium pullulans, Candida zeylanoides, Hanseniaspora uvarum, Metschnikowia pulcherrima, Meyerozyma caribbica, Rhodotorula mucilaginosa, and Yarrowia galli. The highest IAA production was observed in the endophytic strain of A. pullulans (9109.19 ± 146.02 μg/g). No significant differences were found between IAA production in strains from agricultural products of different countries. However, the level of IAA production was strictly strain-specific. Our results suggest that the internal tissues of fruits may be a promising source for the isolation of plant-beneficial yeasts that can be used to promote plant growth.
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18
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Sarli DA, Teixeira Gomes G, Reznikov S, Acosta FF, Fariña JI, Delgado OD, Sánchez LA. Cold-adapted strains as plant growth-promoting bacteria on soybean seeds and biocontrol agents against Macrophomina phaseolina. J Appl Microbiol 2022; 133:2835-2850. [PMID: 35921041 DOI: 10.1111/jam.15759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 07/18/2022] [Accepted: 08/01/2022] [Indexed: 12/01/2022]
Abstract
AIM To characterise cold-adapted bacteria by testing their PGP features and antagonistic activity against Macrophomina phaseolina, both in vitro and coating soybean seeds (Glycine max (L.) Merr.). METHODS AND RESULTS Burkholderia gladioli MB39, Serratia proteamaculans 136 and Serratia proteamaculans 137 were evaluated. In vitro tests showed that S. proteamaculans 136 and 137 produce siderophore and indole-acetic acid (IAA), solubilise phosphate and fix nitrogen. Additionally, B. gladioli MB39 and S. proteamaculans 137 showed hydrolase activity and potent antifungal effects. The biocontrol efficacy over soybean seeds was evaluated using in vitro and green-house methods by immersing seeds into each bacterial suspension. As a result, S. proteamaculans 136 has improved the performance in all the seed-germination evaluated parameters. In addition, S. proteamaculans 137 and B. gladioli MB39 strongly inhibited M. phaseolina, reducing the infection index values to 10% and 0%, respectively. CONCLUSION Serratia proteamaculans 136, 137 and Burkholderia gladioli MB39 showed plant growth promotion features and inhibition of Macrophomina phaseolina infection by producing different antifungal compounds. SIGNIFICANCE AND IMPACT OF THE STUDY Our results reinforce the application of cold-adapted Serratia proteamaculans and Burkholderia gladioli bacterial strains as candidates for developing microbial formulation to promote plant growth and guarantee antifungal protection in soybean crops.
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Affiliation(s)
- Dinorah Anabella Sarli
- Planta Piloto de Procesos Industriales Microbiológicos (PROIMI)-CONICET. Av. Belgrano y Pje. Caseros, (T4001MVB). San Miguel de Tucumán, Tucumán, Argentina
| | - Gisele Teixeira Gomes
- Planta Piloto de Procesos Industriales Microbiológicos (PROIMI)-CONICET. Av. Belgrano y Pje. Caseros, (T4001MVB). San Miguel de Tucumán, Tucumán, Argentina
| | - Sebastián Reznikov
- Estación Experimental Agroindustrial Obispo Colombres (EEAOC), Av. William, W. Cross 3150 (T4101XAC) Las Talitas, Tucumán, Argentina
| | - Federico Francisco Acosta
- Instituto de Ciencias Veterinarias del Litoral [ICIVET-LITORAL]. Centro Científico Tecnológico CONICET - Santa Fé, [CCT SANTA FE]
| | - Julia Inés Fariña
- Planta Piloto de Procesos Industriales Microbiológicos (PROIMI)-CONICET. Av. Belgrano y Pje. Caseros, (T4001MVB). San Miguel de Tucumán, Tucumán, Argentina
| | - Osvaldo Daniel Delgado
- Planta Piloto de Procesos Industriales Microbiológicos (PROIMI)-CONICET. Av. Belgrano y Pje. Caseros, (T4001MVB). San Miguel de Tucumán, Tucumán, Argentina.,Universidad Nacional de Catamarca (UNCa). Facultad de Ciencias Exactas y Naturales. Centro de Biología Molecular y Biotecnología (CEBIOTEC). Av. Belgrano 300, (K4751XAK) San Fernando del Valle de Catamarca, Catamarca, Argentina
| | - Leandro A Sánchez
- Planta Piloto de Procesos Industriales Microbiológicos (PROIMI)-CONICET. Av. Belgrano y Pje. Caseros, (T4001MVB). San Miguel de Tucumán, Tucumán, Argentina
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Effective biofertilizer Trichoderma spp. isolates with enzymatic activity and metabolites enhancing plant growth. INTERNATIONAL MICROBIOLOGY : THE OFFICIAL JOURNAL OF THE SPANISH SOCIETY FOR MICROBIOLOGY 2022; 25:817-829. [PMID: 35854164 DOI: 10.1007/s10123-022-00263-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Revised: 06/12/2022] [Accepted: 07/01/2022] [Indexed: 10/17/2022]
Abstract
Trichoderma species have been widely recognized as biofertilizer fungi for their ability to produce phytohormones and enhance plant growth. In our current study, fifteen strains of Trichoderma spp. (T1-T15) were screened for their capacity to produce phytohormones and metabolites eliciting plant growth. The stains were previously isolated from olive rhizosphere soil in northern Algeria. Plant growth promoting (PGP) potential of Trichoderma spp. was evaluated in vitro through the production of phosphatases, siderophores, hydrogen cyanide (HCN), and ammonia (NH3). Besides, plant growth phytohormones such as gibberellic acid and indole-3-acetic acid (IAA) were assessed quantitatively by a colorimetric assay. Results showed an effective potential of Trichoderma spp. in plant growth-promoting biomolecule production. Importantly, qualitative estimation of phosphate solubilization indicates that T10 gave the highest phosphate solubilization on medium Pikovskaya's with a solubilization index (SI) of 3, whereas, the high capacity nitrogen-fixing was related to T8. On the other hand, quantitative analysis of indole-3-acetic acid and gibberellic acid revealed a production varying between (1.30 μg mL-1 to 21.15 μg mL-1) and (0.53 μg mL-1 to 7.87 μg mL-1), respectively; the highest amount of both phytohormones was obtained by T11 isolate. Indeed, an analysis of ethyl acetate extracts of T11 isolate by high-performance liquid chromatography (HPLC) revealed a high amount (71.19 mg L-1) of IAA. Overall, the results showed clearly that isolate T11 has promising plant growth-promoting properties. Hence, this native Trichoderma isolate (T11) identified as Trichoderma harzianum strain (OL587563) could be used later as biofertilizer for sustainable olive crop agriculture.
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20
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Application of Lactic Acid Bacteria (LAB) in Sustainable Agriculture: Advantages and Limitations. Int J Mol Sci 2022; 23:ijms23147784. [PMID: 35887142 PMCID: PMC9322495 DOI: 10.3390/ijms23147784] [Citation(s) in RCA: 32] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Revised: 07/12/2022] [Accepted: 07/13/2022] [Indexed: 02/01/2023] Open
Abstract
Lactic acid bacteria (LAB) are significant groups of probiotic organisms in fermented food and are generally considered safe. LAB regulate soil organic matter and the biochemical cycle, detoxify hazardous chemicals, and enhance plant health. They are found in decomposing plants, traditional fermented milk products, and normal human gastrointestinal and vaginal flora. Exploring LAB identified in unknown niches may lead to isolating unique species. However, their classification is quite complex, and they are adapted to high sugar concentrations and acidic environments. LAB strains are considered promising candidates for sustainable agriculture, and they promote soil health and fertility. Therefore, they have received much attention regarding sustainable agriculture. LAB metabolites promote plant growth and stimulate shoot and root growth. As fertilizers, LAB can promote biodegradation, accelerate the soil organic content, and produce organic acid and bacteriocin metabolites. However, LAB show an antagonistic effect against phytopathogens, inhibiting fungal and bacterial populations in the rhizosphere and phyllosphere. Several studies have proposed the LAB bioremediation efficiency and detoxification of heavy metals and mycotoxins. However, LAB genetic manipulation and metabolic engineered tools provide efficient cell factories tailor-made to produce beneficial industrial and agro-products. This review discusses lactic acid bacteria advantages and limitations in sustainable agricultural development.
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Ajayan KV, Saranya K, Harilal CC. Indole-3-butyric acid mediated growth and biochemical enhancement in three Selenastracean green microalgae under limited supply of nitrogen source. J Biotechnol 2022; 351:60-73. [DOI: 10.1016/j.jbiotec.2022.04.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Revised: 04/12/2022] [Accepted: 04/26/2022] [Indexed: 11/29/2022]
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Rangseekaew P, Barros-Rodríguez A, Pathom-aree W, Manzanera M. Plant Beneficial Deep-Sea Actinobacterium, Dermacoccus abyssi MT1.1T Promote Growth of Tomato (Solanum lycopersicum) under Salinity Stress. BIOLOGY 2022; 11:biology11020191. [PMID: 35205058 PMCID: PMC8869415 DOI: 10.3390/biology11020191] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/01/2022] [Revised: 01/24/2022] [Accepted: 01/24/2022] [Indexed: 12/23/2022]
Abstract
Simple Summary Salt stress is an important environmental problem that negatively affects agricultural and food production in the world. Currently, the use of plant beneficial bacteria for plant growth promotion is attractive due to the demand for eco-friendly and sustainable agriculture. In this study, salt tolerant deep-sea actinobacterium, Dermacoccus abyssi MT1.1T was investigated plant growth promotion and salt stress mitigation in tomato seedlings. In addition, D. abyssi MT1.1T whole genome was analyzed for plant growth promoting traits and genes related to salt stress alleviation in plants. We also evaluated the biosafety of this strain on human health and organisms in the environment. Our results highlight that the inoculation of D. abyssi MT1.1T could reduce the negative effects of salt stress in tomato seedlings by growth improvement, total soluble sugars accumulation and hydrogen peroxide reduction. Moreover, this strain could survive and colonize tomato roots. Biosafety testing and genome analysis of D. abyssi MT1.1T showed no pathogenicity risk. In conclusion, we provide supporting evidence on the potential of D. abyssi MT1.1T as a safe strain for use in plant growth promotion under salt stress. Abstract Salt stress is a serious agricultural problem threatens plant growth and development resulted in productivity loss and global food security concerns. Salt tolerant plant growth promoting actinobacteria, especially deep-sea actinobacteria are an alternative strategy to mitigate deleterious effects of salt stress. In this study, we aimed to investigate the potential of deep-sea Dermacoccus abyssi MT1.1T to mitigate salt stress in tomato seedlings and identified genes related to plant growth promotion and salt stress mitigation. D. abyssi MT1.1T exhibited plant growth promoting traits namely indole-3-acetic acid (IAA) and siderophore production and phosphate solubilization under 0, 150, 300, and 450 mM NaCl in vitro. Inoculation of D. abyssi MT1.1T improved tomato seedlings growth in terms of shoot length and dry weight compared with non-inoculated seedlings under 150 mM NaCl. In addition, increased total soluble sugar and total chlorophyll content and decreased hydrogen peroxide content were observed in tomato inoculated with D. abyssi MT1.1T. These results suggested that this strain mitigated salt stress in tomatoes via osmoregulation by accumulation of soluble sugars and H2O2 scavenging activity. Genome analysis data supported plant growth promoting and salt stress mitigation potential of D. abyssi MT1.1T. Survival and colonization of D. abyssi MT1.1T were observed in roots of inoculated tomato seedlings. Biosafety testing on D. abyssi MT1.1T and in silico analysis of its whole genome sequence revealed no evidence of its pathogenicity. Our results demonstrate the potential of deep-sea D. abyssi MT1.1T to mitigate salt stress in tomato seedlings and as a candidate of eco-friendly bio-inoculants for sustainable agriculture.
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Affiliation(s)
- Pharada Rangseekaew
- Doctor of Philosophy Program in Applied Microbiology (International Program) in Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand;
- Graduate School, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Adoración Barros-Rodríguez
- Department of Microbiology, Institute for Water Research, University of Granada, 18071 Granada, Spain; (A.B.-R.); (M.M.)
| | - Wasu Pathom-aree
- Research Center in Bioresources for Agriculture, Industry and Medicine, Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
- Correspondence: ; Tel.: +66-53943346-48
| | - Maximino Manzanera
- Department of Microbiology, Institute for Water Research, University of Granada, 18071 Granada, Spain; (A.B.-R.); (M.M.)
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Maitra S, Brestic M, Bhadra P, Shankar T, Praharaj S, Palai JB, Shah MMR, Barek V, Ondrisik P, Skalický M, Hossain A. Bioinoculants-Natural Biological Resources for Sustainable Plant Production. Microorganisms 2021; 10:51. [PMID: 35056500 PMCID: PMC8780112 DOI: 10.3390/microorganisms10010051] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2021] [Revised: 12/21/2021] [Accepted: 12/23/2021] [Indexed: 11/22/2022] Open
Abstract
Agricultural sustainability is of foremost importance for maintaining high food production. Irresponsible resource use not only negatively affects agroecology, but also reduces the economic profitability of the production system. Among different resources, soil is one of the most vital resources of agriculture. Soil fertility is the key to achieve high crop productivity. Maintaining soil fertility and soil health requires conscious management effort to avoid excessive nutrient loss, sustain organic carbon content, and minimize soil contamination. Though the use of chemical fertilizers have successfully improved crop production, its integration with organic manures and other bioinoculants helps in improving nutrient use efficiency, improves soil health and to some extent ameliorates some of the constraints associated with excessive fertilizer application. In addition to nutrient supplementation, bioinoculants have other beneficial effects such as plant growth-promoting activity, nutrient mobilization and solubilization, soil decontamination and/or detoxification, etc. During the present time, high energy based chemical inputs also caused havoc to agriculture because of the ill effects of global warming and climate change. Under the consequences of climate change, the use of bioinputs may be considered as a suitable mitigation option. Bioinoculants, as a concept, is not something new to agricultural science, however; it is one of the areas where consistent innovations have been made. Understanding the role of bioinoculants, the scope of their use, and analysing their performance in various environments are key to the successful adaptation of this technology in agriculture.
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Affiliation(s)
- Sagar Maitra
- Department of Agronomy, M.S. Swaminathan School of Agriculture, Centurion University of Technology and Management, Paralakheundi 761 211, India; (S.M.); (T.S.); (S.P.); (J.B.P.)
| | - Marian Brestic
- Department of Plant Physiology, Slovak University of Agriculture, Tr. A. Hlinku 2, 949 01 Nitra, Slovakia;
- Department of Botany and Plant Physiology, Faculty of Agrobiology, Food, and Natural Resources, Czech University of Life Sciences Prague, Kamycka 129, 165 00 Prague, Czech Republic;
| | - Preetha Bhadra
- Department of Biotechnology, M.S. Swaminathan School of Agriculture, Centurion University of Technology and Management, Paralakheundi 761 211, India;
| | - Tanmoy Shankar
- Department of Agronomy, M.S. Swaminathan School of Agriculture, Centurion University of Technology and Management, Paralakheundi 761 211, India; (S.M.); (T.S.); (S.P.); (J.B.P.)
| | - Subhashisa Praharaj
- Department of Agronomy, M.S. Swaminathan School of Agriculture, Centurion University of Technology and Management, Paralakheundi 761 211, India; (S.M.); (T.S.); (S.P.); (J.B.P.)
| | - Jnana Bharati Palai
- Department of Agronomy, M.S. Swaminathan School of Agriculture, Centurion University of Technology and Management, Paralakheundi 761 211, India; (S.M.); (T.S.); (S.P.); (J.B.P.)
| | | | - Viliam Barek
- Department of Water Resources and Environmental Engineering, Faculty of Horticulture and Landscape Engineering, Slovak University of Agriculture, Tr. A. Hlinku 2, 949 01 Nitra, Slovakia;
| | - Peter Ondrisik
- Department of Plant Physiology, Slovak University of Agriculture, Tr. A. Hlinku 2, 949 01 Nitra, Slovakia;
| | - Milan Skalický
- Department of Botany and Plant Physiology, Faculty of Agrobiology, Food, and Natural Resources, Czech University of Life Sciences Prague, Kamycka 129, 165 00 Prague, Czech Republic;
| | - Akbar Hossain
- Bangladesh Wheat and Maize Research Institute, Dinajpur 5200, Bangladesh;
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24
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Tanweer S, Dash K, Panda B. Enhanced biomass production of Synechocystis sp. PCC 6803 by two associated bacteria Paenibacillus camelliae and Curtobacterium ammoniigenes. Arch Microbiol 2021; 204:66. [PMID: 34940910 DOI: 10.1007/s00203-021-02711-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2021] [Revised: 10/22/2021] [Accepted: 11/15/2021] [Indexed: 10/19/2022]
Abstract
Synechocystis sp. PCC 6803 grown continuously in a 5-L photo-bioreactor for 20 months was found to have associated consortia with heterotrophic microorganisms. Two strains of bacteria were isolated from the long-term cultures of cyanobacteria with the aim to test whether their presence affects cyanobacterial growth and metabolism. The two strains were phylogenetically identified as Paenibacillus camelliae and Curtobacterium ammoniigenes, respectively. Co-culturing the Synechocystis sp. with either of the isolates under photoautotrophic and photoheterotrophic conditions exerted a statistically significant growth enhancement effect on cyanobacteria. Under co-culture experiments, the addition of P. camelliae resulted in a four-fold higher biomass yield with a considerable decrease in the stationary period. The growth was more pronounced on the addition of acetate to the culture media. Growth-enhancing factors like indole acetic acid (IAA) and siderophores were detected in the co-culture conditions which proved to be the main driving force in boosting cyanobacterial growth. Thus, the cyanobacteria-bacteria consortia can be very useful for augmenting biomass production by circumventing the time factor which can be further exploited for various biotechnological applications.
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Affiliation(s)
- Sadaf Tanweer
- Microbiology Research Laboratory, Department of Botany, Utkal University, Bhubaneswar, Odisha, India
| | - Karisma Dash
- Microbiology Research Laboratory, Department of Botany, Utkal University, Bhubaneswar, Odisha, India
| | - Bhabatarini Panda
- Microbiology Research Laboratory, Department of Botany, Utkal University, Bhubaneswar, Odisha, India.
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25
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Chandel A, Mann R, Kaur J, Norton S, Edwards J, Spangenberg G, Sawbridge T. Implications of Seed Vault Storage Strategies for Conservation of Seed Bacterial Microbiomes. Front Microbiol 2021; 12:784796. [PMID: 34925291 PMCID: PMC8678515 DOI: 10.3389/fmicb.2021.784796] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 10/25/2021] [Indexed: 12/20/2022] Open
Abstract
Global seed vaults are important, as they conserve plant genetic resources for future breeding to improve crop yield and quality and to overcome biotic and abiotic stresses. However, little is known about the impact of standard storage procedures, such as seed drying and cold storage on the seed bacterial community, and the ability to recover seed-associated bacteria after storage. In this study, soybean [Glycine max (L.) Merr.] seeds were analyzed to characterize changes in the bacterial community composition and culturability under varying storage conditions. The G. max bacterial microbiome was analyzed from undried seed, dried seed, and seed stored for 0, 3, 6, and 14months. Storage temperatures consisted of −20°C, 4°C, and room temperature (RT), with −20°C being commonly used in seed storage vaults globally. The seed microbiome of G. max was dominated by Gammaproteobacteria under all conditions. Undried seed was dominated by Pantoea (33.9%) and Pseudomonas (51.1%); however, following drying, the abundance of Pseudomonas declined significantly (0.9%), Pantoea increased significantly (73.6%), and four genera previously identified including Pajaroellobacter, Nesterenkonia, env.OPS_17, and Acidibacter were undetectable. Subsequent storage at RT, 4, or −20°C maintained high-abundance Genera at the majority of time points, although RT caused greater fluctuations in abundances. For many of the low-abundance Genera, storage at −20°C resulted in their gradual disappearance, whereas storage at 4°C or RT resulted in their more rapid disappearance. The changes in seed bacterial composition were reflected by cultured bacterial taxa obtained from the stored G. max seed. The main taxa were largely culturable and had similar relative abundance, while many, but not all, of the low-abundance taxa were also culturable. Overall, these results indicate that the initial seed drying affects the seed bacterial composition, suggesting that microbial isolation prior to seed drying is recommended to conserve these microbes. The standard seed storage condition of −20°C is most suitable for conservation of the bacterial seed microbiome, as this storage temperature slows down the loss of seed bacterial diversity over longer time periods, particularly low-abundance taxa.
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Affiliation(s)
- Ankush Chandel
- Agriculture Victoria Research, AgriBio, Centre for AgriBioscience, Bundoora, VIC, Australia.,School of Applied Systems Biology, La Trobe University, Bundoora, VIC, Australia
| | - Ross Mann
- Agriculture Victoria Research, AgriBio, Centre for AgriBioscience, Bundoora, VIC, Australia
| | - Jatinder Kaur
- Agriculture Victoria Research, AgriBio, Centre for AgriBioscience, Bundoora, VIC, Australia
| | - Sally Norton
- Agriculture Victoria Research, Australian Grains Genebank, Horsham, VIC, Australia
| | - Jacqueline Edwards
- Agriculture Victoria Research, AgriBio, Centre for AgriBioscience, Bundoora, VIC, Australia.,School of Applied Systems Biology, La Trobe University, Bundoora, VIC, Australia
| | - German Spangenberg
- Agriculture Victoria Research, AgriBio, Centre for AgriBioscience, Bundoora, VIC, Australia.,School of Applied Systems Biology, La Trobe University, Bundoora, VIC, Australia
| | - Timothy Sawbridge
- Agriculture Victoria Research, AgriBio, Centre for AgriBioscience, Bundoora, VIC, Australia.,School of Applied Systems Biology, La Trobe University, Bundoora, VIC, Australia
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26
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Naing AH, Maung TT, Kim CK. The ACC deaminase-producing plant growth-promoting bacteria: Influences of bacterial strains and ACC deaminase activities in plant tolerance to abiotic stress. PHYSIOLOGIA PLANTARUM 2021; 173:1992-2012. [PMID: 34487352 DOI: 10.1111/ppl.13545] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Revised: 08/17/2021] [Accepted: 08/27/2021] [Indexed: 05/02/2023]
Abstract
Global climate change results in frequent occurrences and/or long durations of abiotic stress. Field grown plants are affected by abiotic stress, and they modulate ethylene in response to abiotic stress exposure and use it as a signaling molecule in stress tolerance mechanisms. However, frequent occurrences and/or long durations of stress conditions can cause plants to induce ethylene levels higher than their thresholds, resulting in a reduction of plant growth and crop productivity. The use of plant growth-promoting bacteria (PGPB) that produce 1-aminocyclopropane-1-carboxylate (ACC) deaminase has increased in various plant species to ameliorate the deleterious effects of stress-induced ethylene and promote plant growth despite abiotic stress conditions. Unfortunately, there are restrictions that limit the use of ACC deaminase-producing PGPB to protect plants from abiotic stresses. This review describes how abiotic stress induces ethylene and how stress-induced ethylene adversely affects plant growth. In addition, this review emphasizes the importance of the compatibility of PGPB strains and specific host plants and ACC deaminase activities in the reduction of stress ethylene and the promotion of plant growth, based on the research published in the last 10 years. Moreover, due to the restrictions in PGPB use, this review highlights the potential generation of transgenic plants expressing the AcdS gene that encodes the ACC deaminase enzyme as a substitute for PGPB in the future to support and uplift agricultural sustainability and food security globally.
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Affiliation(s)
- Aung Htay Naing
- Department of Horticulture, Kyungpook National University, Daegu, Korea
| | - The-Thiri Maung
- Department of Food Science and Technology, Kongju National University, Yesan, Korea
| | - Chang Kil Kim
- Department of Horticulture, Kyungpook National University, Daegu, Korea
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27
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From Lab to Farm: Elucidating the Beneficial Roles of Photosynthetic Bacteria in Sustainable Agriculture. Microorganisms 2021; 9:microorganisms9122453. [PMID: 34946055 PMCID: PMC8707939 DOI: 10.3390/microorganisms9122453] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Revised: 11/16/2021] [Accepted: 11/24/2021] [Indexed: 11/16/2022] Open
Abstract
Photosynthetic bacteria (PSB) possess versatile metabolic abilities and are widely applied in environmental bioremediation, bioenergy production and agriculture. In this review, we summarize examples of purple non-sulfur bacteria (PNSB) through biofertilization, biostimulation and biocontrol mechanisms to promote plant growth. They include improvement of nutrient acquisition, production of phytohormones, induction of immune system responses, interaction with resident microbial community. It has also been reported that PNSB can produce an endogenous 5-aminolevulinic acid (5-ALA) to alleviate abiotic stress in plants. Under biotic stress, these bacteria can trigger induced systemic resistance (ISR) of plants against pathogens. The nutrient elements in soil are significantly increased by PNSB inoculation, thus improving fertility. We share experiences of researching and developing an elite PNSB inoculant (Rhodopseudomonas palustris PS3), including strategies for screening and verifying beneficial bacteria as well as the establishment of optimal fermentation and formulation processes for commercialization. The effectiveness of PS3 inoculants for various crops under field conditions, including conventional and organic farming, is presented. We also discuss the underlying plant growth-promoting mechanisms of this bacterium from both microbial and plant viewpoints. This review improves our understanding of the application of PNSB in sustainable crop production and could inspire the development of diverse inoculants to overcome the changes in agricultural environments created by climate change.
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28
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Ijaz A, Mumtaz MZ, Wang X, Ahmad M, Saqib M, Maqbool H, Zaheer A, Wang W, Mustafa A. Insights Into Manganese Solubilizing Bacillus spp. for Improving Plant Growth and Manganese Uptake in Maize. FRONTIERS IN PLANT SCIENCE 2021; 12:719504. [PMID: 34795682 PMCID: PMC8593242 DOI: 10.3389/fpls.2021.719504] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Accepted: 10/08/2021] [Indexed: 06/12/2023]
Abstract
Manganese (Mn) is an essential micronutrient for plant growth that is involved in the structure of photosynthetic proteins and enzymes. Mn deficiency is widespread mainly in dry, calcareous, and sandy soil, which leads to a significant decrease in crop yield. Mn-reducing bacteria promote the solubilization of Mn minerals, thus increasing Mn availability in soil. The present study aimed to assess the Mn solubilizing ability and plant growth-promoting potential of Bacillus spp. strains for maize plants with insoluble Mn compounds. Several Mn-solubilizing bacterial (MSB) strains were isolated from the maize rhizosphere using nutrient agar media amended with 50 mM MnO2. These strains were screened based on qualitative and quantitative solubilization of Mn, phosphorus, potassium, and zinc and production of ammonia. The majority of MSB strains were positive for catalase, protease, amylase, and oxidase activity, while more than 60% of tested strains were positive for lipase activity, and the production of indole-3-acetic acid and siderophores. Forty-five percent of the tested strains also showed solubilization of potassium. All the MSB strains were evaluated for their ability to promote plant growth and Mn uptake in the presence of MnO2 under axenic sand culture conditions. The results revealed that inoculation with MSB strains under sand culture significantly improved the growth of maize seedlings except for strains ASH7, ASH10, and ASH12. Comparatively, strains ASH6, ASH11, ASH19, ASH20, and ASH22 demonstrated a better increase in plant growth, fresh and dry biomass, and Mn uptake in roots and shoots than the other strains tested. All of these strains were identified as Bacillus spp. through 16S rRNA partial gene sequencing. Maize inoculation with these selected identified MSB strains also resulted in an increase in maize growth and nutrient uptake in maize roots and shoots under soil culture conditions in the presence of native soil Mn. The current study highlights the importance of MSB strain inoculation which could be a potential bioinoculants to promote plant growth under Mn deficiency.
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Affiliation(s)
- Ayesha Ijaz
- Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, Pakistan
| | - Muhammad Zahid Mumtaz
- Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, Pakistan
| | - Xiukang Wang
- College of Life Sciences, Yan’an University, Yan’an, China
| | - Maqshoof Ahmad
- Department of Soil Science, The Islamia University of Bahawalpur, Bahawalpur, Pakistan
| | - Muhammad Saqib
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, Pakistan
| | - Hira Maqbool
- Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, Pakistan
| | - Ahmad Zaheer
- Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, Pakistan
| | - Wenqiang Wang
- College of Life Sciences, Yan’an University, Yan’an, China
| | - Adnan Mustafa
- SoWa Research Infrastructure, Biology Centre CAS, České Budějovice, Czechia
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29
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Luo K, Ouellet T, Zhao H, Wang X, Kang Z. Wheat- Fusarium graminearum Interactions Under Sitobion avenae Influence: From Nutrients and Hormone Signals. Front Nutr 2021; 8:703293. [PMID: 34568403 PMCID: PMC8455932 DOI: 10.3389/fnut.2021.703293] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Accepted: 08/06/2021] [Indexed: 11/13/2022] Open
Abstract
The English grain aphid Sitobion avenae and phytopathogen Fusarium graminearum are wheat spike colonizers. "Synergistic" effects of the coexistence of S. avenae and F. graminearum on the wheat spikes have been shown in agroecosystems. To develop genetic resistance in diverse wheat cultivars, an important question is how to discover wheat-F. graminearum interactions under S. avenae influence. In recent decades, extensive studies have typically focused on the unraveling of more details on the relationship between wheat-aphids and wheat-pathogens that has greatly contributed to the understanding of these tripartite interactions at the ecological level. Based on the scientific production available, the working hypotheses were synthesized from the aspects of environmental nutrients, auxin production, hormone signals, and their potential roles related to the tripartite interaction S. avenae-wheat-F. graminearum. In addition, this review highlights the relevance of preexposure to the herbivore S. avenae to trigger the accumulation of mycotoxins, which stimulates the infection process of F. graminearum and epidemic of Fusarium head blight (FHB) in the agroecosystems.
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Affiliation(s)
- Kun Luo
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F University, Xianyang, China.,Shaanxi Key Laboratory of Chinese Jujube, College of Life Science, Yan'an University, Yan'an, China
| | - Thérèse Ouellet
- Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON, Canada
| | - Huiyan Zhao
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F University, Xianyang, China
| | - Xiukang Wang
- Shaanxi Key Laboratory of Chinese Jujube, College of Life Science, Yan'an University, Yan'an, China
| | - Zhensheng Kang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F University, Xianyang, China
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30
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Papp O, Kocsis T, Biró B, Jung T, Ganszky D, Abod É, Tirczka I, Tóthné Bogdányi F, Drexler D. Co-Inoculation of Organic Potato with Fungi and Bacteria at High Disease Severity of Rhizoctonia solani and Streptomyces spp. Increases Beneficial Effects. Microorganisms 2021; 9:microorganisms9102028. [PMID: 34683349 PMCID: PMC8540471 DOI: 10.3390/microorganisms9102028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Revised: 09/17/2021] [Accepted: 09/21/2021] [Indexed: 11/29/2022] Open
Abstract
Rhizobacteria-based technologies may constitute a viable option for biological fertilization and crop protection. The effects of two microbial inoculants (1) PPS: Pseudomonas protegens, P. jessenii and Stenotrophomonas maltophilia biocontrol bacterium strains and (2) TPB: Trichoderma atroviride, Pseudomonas putida, and Bacillus subtilis fungi, bacteria biocontrol, and biofertilizer combinations were examined on potato (Solanum tuberosum L. var. Demon) in three consecutive years in irrigated organic conditions. The number of tubers showing symptoms of Streptomyces sp. and Rhizoctonia sp. was recorded. The severity of symptoms was evaluated based on the damaged tuber surface. There was a large annual variability in both the symptoms caused by soil-borne pathogens, and the effect of bio-inoculants. In the first and second year, with a stronger Rhizoctonia and Streptomyces spp. incidence, the bacterial and fungal combination of TPB inoculums with both the potential plant nutrition and biocontrol ability of the strains seemed to have a better efficiency to control the diseases. This tendency was not supported in the third year, and this may be attributed to the relatively high natural precipitation. Further studies are required to investigate the agronomic benefits of these inoculants and to tailor their application to the soil microbial characteristics and weather conditions.
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Affiliation(s)
- Orsolya Papp
- Hungarian Research Institute of Organic Agriculture (ÖMKi), 1033 Budapest, Hungary; (D.G.); (F.T.B.); (D.D.)
- Correspondence: (O.P.); (B.B.)
| | - Tamás Kocsis
- Department of Food Microbiology, Hygiene and Safety, Hungarian University of Agriculture and Life Sciences, 1118 Budapest, Hungary;
| | - Borbála Biró
- Department of Agri-Environmental Sciences, Faculty of Horticulture, Szent István University, 1118 Budapest, Hungary
- Correspondence: (O.P.); (B.B.)
| | - Timea Jung
- Brightic Research Ltd., 2626 Nagymaros, Hungary;
| | - Daniel Ganszky
- Hungarian Research Institute of Organic Agriculture (ÖMKi), 1033 Budapest, Hungary; (D.G.); (F.T.B.); (D.D.)
| | - Éva Abod
- Department of Horticulture, Faculty of Technical and Human Sciences, Sapientia Hungarian University of Transylvania, 540485 Târgu-Mureș, Romania;
| | - Imre Tirczka
- Department of Agroecology and Organic Farming, Hungarian University of Agriculture and Life Sciences, 2100 Gödöllő, Hungary;
| | - Franciska Tóthné Bogdányi
- Hungarian Research Institute of Organic Agriculture (ÖMKi), 1033 Budapest, Hungary; (D.G.); (F.T.B.); (D.D.)
| | - Dóra Drexler
- Hungarian Research Institute of Organic Agriculture (ÖMKi), 1033 Budapest, Hungary; (D.G.); (F.T.B.); (D.D.)
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31
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Ali M, Ali Q, Sohail MA, Ashraf MF, Saleem MH, Hussain S, Zhou L. Diversity and Taxonomic Distribution of Endophytic Bacterial Community in the Rice Plant and Its Prospective. Int J Mol Sci 2021; 22:ijms221810165. [PMID: 34576331 PMCID: PMC8465699 DOI: 10.3390/ijms221810165] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Revised: 09/06/2021] [Accepted: 09/16/2021] [Indexed: 11/16/2022] Open
Abstract
Endophytic bacterial communities are beneficial communities for host plants that exist inside the surfaces of plant tissues, and their application improves plant growth. They benefit directly from the host plant by enhancing the nutrient amount of the plant’s intake and influencing the phytohormones, which are responsible for growth promotion and stress. Endophytic bacteria play an important role in plant-growth promotion (PGP) by regulating the indirect mechanism targeting pest and pathogens through hydrolytic enzymes, antibiotics, biocontrol potential, and nutrient restriction for pathogens. To attain these benefits, firstly bacterial communities must be colonized by plant tissues. The nature of colonization can be achieved by using a set of traits, including attachment behavior and motility speed, degradation of plant polymers, and plant defense evasion. The diversity of bacterial endophytes colonization depends on various factors, such as plants’ relationship with environmental factors. Generally, each endophytic bacteria has a wide host range, and they are used as bio-inoculants in the form of synthetic applications for sustainable agriculture systems and to protect the environment from chemical hazards. This review discusses and explores the taxonomic distribution of endophytic bacteria associated with different genotypes of rice plants and their origin, movement, and mechanism of PGP. In addition, this review accentuates compressive meta data of endophytic bacteria communities associated with different genotypes of rice plants, retrieves their plant-growth-promoting properties and their antagonism against plant pathogens, and discusses the indication of endophytic bacterial flora in rice plant tissues using various methods. The future direction deepens the study of novel endophytic bacterial communities and their identification from rice plants through innovative techniques and their application for sustainable agriculture systems.
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Affiliation(s)
- Mohsin Ali
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Agro-Product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China;
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Qurban Ali
- Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Department of Plant Pathology, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China
- Correspondence: (Q.A.); (L.Z.)
| | - Muhammad Aamir Sohail
- Center for Excellence in Molecular Plant Sciences, National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China;
| | | | - Muhammad Hamzah Saleem
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China;
| | - Saddam Hussain
- Department of Agronomy, University of Agriculture, Faisalabad 38040, Punjab, Pakistan;
| | - Lei Zhou
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Agro-Product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China;
- Correspondence: (Q.A.); (L.Z.)
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Draft genome sequencing and functional annotation and characterization of biofilm-producing bacterium Bacillus novalis PD1 isolated from rhizospheric soil. Antonie van Leeuwenhoek 2021; 114:1977-1989. [PMID: 34537868 DOI: 10.1007/s10482-021-01655-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 09/06/2021] [Indexed: 10/20/2022]
Abstract
Biofilm forming bacterium Bacillus novalis PD1 was isolated from the rhizospheric soil of a paddy field. B. novalis PD1 is a Gram-positive, facultatively anaerobic, motile, slightly curved, round-ended, and spore-forming bacteria. The isolate B. novalis PD1 shares 98.45% similarity with B. novalis KB27B. B. vireti LMG21834 and B. drentensis NBRC 102,427 are the closest phylogenetic neighbours for B. novalis PD1. The draft genome RAST annotation showed a linear chromosome with 4,569,088 bp, encoding 6139 coding sequences, 70 transfer RNA (tRNA), and 11 ribosomal RNA (rRNA) genes. The genomic annotation of biofilm forming B. novalis PD1(> 3.6@OD595nm) showed the presence of exopolysaccharide-forming genes (ALG, PSL, and PEL) as well as other biofilm-related genes (comER, Spo0A, codY, sinR, TasA, sipW, degS, and degU). Antibiotic inactivation gene clusters (ANT (6)-I, APH (3')-I, CatA15/A16 family), efflux pumps conferring antibiotic resistance genes (BceA, BceB, MdtABC-OMF, MdtABC-TolC, and MexCD-OprJ), and secondary metabolites linked to phenazine, terpene, and beta lactone gene clusters are part of the genome.
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Frébortová J, Frébort I. Biochemical and Structural Aspects of Cytokinin Biosynthesis and Degradation in Bacteria. Microorganisms 2021; 9:microorganisms9061314. [PMID: 34208724 PMCID: PMC8234997 DOI: 10.3390/microorganisms9061314] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Revised: 06/11/2021] [Accepted: 06/14/2021] [Indexed: 11/16/2022] Open
Abstract
It has been known for quite some time that cytokinins, hormones typical of plants, are also produced and metabolized in bacteria. Most bacteria can only form the tRNA-bound cytokinins, but there are examples of plant-associated bacteria, both pathogenic and beneficial, that actively synthesize cytokinins to interact with their host. Similar to plants, bacteria produce diverse cytokinin metabolites, employing corresponding metabolic pathways. The identification of genes encoding the enzymes involved in cytokinin biosynthesis and metabolism facilitated their detailed characterization based on both classical enzyme assays and structural approaches. This review summarizes the present knowledge on key enzymes involved in cytokinin biosynthesis, modifications, and degradation in bacteria, and discusses their catalytic properties in relation to the presence of specific amino acid residues and protein structure.
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Fernandes MFR, Ribeiro TG, Rouws JR, de Barros Soares LH, Zilli JÉ. Biotechnological potential of bacteria from genera Bacillus Paraburkholderia and Pseudomonas to control seed fungal pathogens. Braz J Microbiol 2021; 52:705-714. [PMID: 33594600 PMCID: PMC8105491 DOI: 10.1007/s42770-021-00448-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Accepted: 02/03/2021] [Indexed: 11/30/2022] Open
Abstract
Fungal pathogens are important determinants of plant dynamics in the environment. These pathogens can cause plant death and occasionally yield losses in crops, even at low initial densities in the soil. The objective of this study was to select and evaluate fungal antagonistic bacteria and to determine their biological control capacity in soybean seedlings. A total of 877 strains from the genera Pseudomonas, Bacillus, and Paraburkholderia/Burkholderia were screened, and their antagonistic effects on fungi frequently found in seeds were evaluated using four methods: quadruple plating, paired culture confrontation, strain containment, and inoculation of soybean seeds. The experimental design was completely randomized, with three replications for the first three methods and five replications in a 3 × 9 factorial scheme for the fourth treatment. The strains with the highest biotechnological potential were inoculated into soybean seeds to evaluate the biological control of fungi that attack this crop at germination. Seventy-nine strains presented some type of antagonistic effect on the tested fungi, with two strains presenting a broader antagonistic action spectrum in the seed test. In addition to the antagonistic potential, strains BR 10788 and BR 11793, when simultaneously inoculated or alone, significantly increased the seedling dry matter mass, and promoted the growth of soybean seedlings even in the presence of most fungi. Thus, this study demonstrated the efficiency of the antagonistic activity of these strains in relation to the target fungi, which proved to be potential agents for biological control.
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Affiliation(s)
- Mariana Ferreira Rabelo Fernandes
- Soil Department, Universidade Federal Rural do Rio de Janeiro, BR 465 km 07, Seropédica, Rio de Janeiro, 23890-000, Brazil
- Embrapa Agrobiologia, BR 465 km 07, Seropédica, Rio de Janeiro, 23890-000, Brazil
| | | | | | | | - Jerri Édson Zilli
- Embrapa Agrobiologia, BR 465 km 07, Seropédica, Rio de Janeiro, 23890-000, Brazil.
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The Impact of Growth-Promoting Streptomycetes Isolated from Rhizosphere and Bulk Soil on Oilseed Rape (Brassica napus L.) Growth Parameters. SUSTAINABILITY 2021. [DOI: 10.3390/su13105704] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Inoculation of Streptomyces to improve oilseed rape (Brassica napus L.) yields and minimise the use of chemical fertilisers is a promising sustainable strategy. In this study, we isolated 72 actinobacterial strains from rhizosphere of oilseed rape and maize and from bulk soil for screening and characterising their antimicrobial activity. Nine promising strains, identified as Streptomyces sp. by morphology, physiological characteristics, and 16S rRNA gene sequencing, were selected for their plant growth-promoting traits and in planta experiments. The actinobacterial strains were positive for IAA production, siderophore production, and HCN production. In planta experiments were conducted by soaking the oilseed rape seeds in the actinobacterial suspension, followed by plant growth under controlled conditions in a cultivate chamber (22–28 °C, 8 h dark/16 h light, constant humidity 80%). We recorded root and shoot length (cm) and seedling fresh weight (g). For most of the abovementioned parameters, a significant enhancement was observed with strain KmiRC20A118 treatment. The length of the root increased by 53.14%, the shoot length increased by 65.6%, and the weight of the fresh plant by 60% compared to the control. The integrated application of PGPS (Plant Growth Promoting Streptomyces) from the rhizosphere of oilseed rape is a promising strategy to improve the growth of oilseed rape.
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Chaïb S, Pistevos JC, Bertrand C, Bonnard I. Allelopathy and allelochemicals from microalgae: An innovative source for bio-herbicidal compounds and biocontrol research. ALGAL RES 2021. [DOI: 10.1016/j.algal.2021.102213] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Bokashi, Boiled Manure and Penergetic Applications Increased Agronomic Production Variables and May Enhance Powdery Mildew Severity of Organic Tomato Plants. HORTICULTURAE 2021. [DOI: 10.3390/horticulturae7020027] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Research on organic fertilizers are of crucial importance for sustainable production systems with high efficiency of natural resource use. The objective of this study was to evaluate organic sources of fertilization (boiled manure (BM), effective microorganism (EM) Bokashi, and Penergetic) for their effects on agronomic variables (fruit size and yield, total soluble solids) and on foliar powdery mildew severity of tomato (Solanum lycopersicum L.). The crops were grown during two cropping cycles in protected cultivation. The treatments were: Control (water only); 50 g per plant of EM Bokashi compost in two applications; Penergetic at 1.5 g L−1 applied to the substrate before planting or sprayed on the plants 14 days after transplanting; and BM at 2.5%, 5.0%, 7.5%, and 10% concentrations (vol/vol) in water, via fertigation. Fruit production and quality were assessed. The effects of treatments on powdery mildew (Leveillula taurica Lév. G. Arnaud) were analyzed by using a diagrammatic scale. Bokashi, 10% BM, and Penergetic increased fruit production of the first three fruit trusses. Bokashi treatment increased tomato fruit diameter. The effects on fruit length and total soluble solids varied with each crop cycle. Powdery mildew severity increased with 10% BM, compared to the control. Both 10% BM and Penergetic presented similar fruit production to Bokashi and are good candidates as substitutes for Bokashi as organic fertilizers/amendments while maintaining tomato yield.
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Lee SM, Ryu CM. Algae as New Kids in the Beneficial Plant Microbiome. FRONTIERS IN PLANT SCIENCE 2021; 12:599742. [PMID: 33613596 PMCID: PMC7889962 DOI: 10.3389/fpls.2021.599742] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Accepted: 01/13/2021] [Indexed: 05/08/2023]
Abstract
Previously, algae were recognized as small prokaryotic and eukaryotic organisms found only in aquatic habitats. However, according to a recent paradigm shift, algae are considered ubiquitous organisms, occurring in plant tissues as well as in soil. Accumulating evidence suggests that algae represent a member of the plant microbiome. New results indicate that plants respond to algae and activate related downstream signaling pathways. Application of algae has beneficial effects on plant health, such as plant growth promotion and disease control. Although accumulating evidence suggests that secreted compounds and cell wall components of algae induce physiological and structural changes in plants that protect against biotic and abiotic stresses, knowledge of the underlying mechanisms and algal determinants is limited. In this review, we discuss recent studies on this topic, and highlight the bioprotectant and biostimulant roles of algae as a new member of the plant beneficial microbiome for crop improvement.
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Affiliation(s)
- Sang-Moo Lee
- Molecular Phytobacteriology Laboratory, Infectious Disease Research Center, KRIBB, Daejeon, South Korea
- Department of Biosystems and Bioengineering, KRIBB School of Biotechnology, University of Science and Technology, Daejeon, South Korea
- Department of Applied Bioscience, Dong-A University, Busan, South Korea
| | - Choong-Min Ryu
- Molecular Phytobacteriology Laboratory, Infectious Disease Research Center, KRIBB, Daejeon, South Korea
- Department of Biosystems and Bioengineering, KRIBB School of Biotechnology, University of Science and Technology, Daejeon, South Korea
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El-Gawad AMA, El-Shazly MM. Sustainable Development of Microbial Community in Some Localities in the Desert Soil of Egypt. SPRINGER WATER 2021:213-235. [DOI: 10.1007/978-3-030-73161-8_8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
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Abdulsada Z, Kibbee R, Örmeci B, DeRosa M, Princz J. Impact of anaerobically digested silver and copper oxide nanoparticles in biosolids on soil characteristics and bacterial community. CHEMOSPHERE 2021; 263:128173. [PMID: 33297141 DOI: 10.1016/j.chemosphere.2020.128173] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 08/24/2020] [Accepted: 08/26/2020] [Indexed: 06/12/2023]
Abstract
This study investigated whether 2 and 30 mg AgNPs or CuONPs/g TS present in treated sludge (biosolids) may impact the soil health by monitoring the soil characteristics and soil bacterial community for 105 days after the application of biosolids. AgNPs or CuONPs/g TS were first anaerobically digested with mixed primary and secondary sludge rather than adding pristine nanoparticles to biosolids directly. Both environmentally relevant (under the USEPA ceiling concentration limits) and high concentrations of AgNPs and CuONPs were tested. Soil tests included TOC, TN, TP, pH, cell viability and heterotrophic plate counts (HPC). Metagenomic data was generated by high-throughput sequencing of the 16S rRNA gene to explore bacterial populations and diversity. AgNPs and CuONPs at 2 and 30 mg NPs/g TS of sludge could impact soil health factors such as bacterial diversity, community structure, and the population of plant growth-promoting rhizobacteria (PGPR). The population of the highly abundant bacteria that have important physiological roles in soil decreased, while the less important bacteria for soil function were able to thrive. CuONPs exhibited a higher level of toxicity than the AgNPs at both phylum and genus taxonomic levels, and the HPC decreased with higher concentrations of AgNPs and CuONPs. Initially, most of the studied phyla abundance was affected, but the control and other reactors approached similar levels by the end of the experiments, which may be explained by the decrease in toxicity due to the transformation of nanoparticles and the defence mechanisms of bacteria, and indicates the need for long-term field studies.
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Affiliation(s)
- Zainab Abdulsada
- Department of Civil and Environmental Engineering, Carleton University, 1125 Colonel by Drive, Ottawa, ON K1S 5B6, Canada
| | - Richard Kibbee
- Department of Civil and Environmental Engineering, Carleton University, 1125 Colonel by Drive, Ottawa, ON K1S 5B6, Canada
| | - Banu Örmeci
- Department of Civil and Environmental Engineering, Carleton University, 1125 Colonel by Drive, Ottawa, ON K1S 5B6, Canada.
| | - Maria DeRosa
- Department of Chemistry, Carleton University, 1125 Colonel by Drive, Ottawa, ON K1S 5B6, Canada
| | - Juliska Princz
- Environment and Climate Change Canada, 335 River Road South, Ottawa, ON K1V 1C7, Canada
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Bishnu Maya K, Gauchan DP, Khanal SN, Chimouriya S, Lamichhane J. Amelioration of growth attributes of Bambusa nutans subsp. cupulata Stapleton by indole-3-acetic acid extracted from newly isolated Bacillus mesonae MN511751 from rhizosphere of Bambusa tulda Roxburgh. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2021. [DOI: 10.1016/j.bcab.2021.101920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Pichler G, Stöggl W, Trippel D, Candotto Carniel F, Muggia L, Ametrano CG, Çimen T, Holzinger A, Tretiach M, Kranner I. Phytohormone release by three isolated lichen mycobionts and the effects of indole-3-acetic acid on their compatible photobionts. Symbiosis 2020; 82:95-108. [PMID: 33223597 PMCID: PMC7671983 DOI: 10.1007/s13199-020-00721-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2020] [Accepted: 09/14/2020] [Indexed: 01/19/2023]
Abstract
Evidence is emerging that phytohormones represent key inter-kingdom signalling compounds supporting chemical communication between plants, fungi and bacteria. The roles of phytohormones for the lichen symbiosis are poorly understood, particularly in the process of lichenization, i.e. the key events which lead free-living microalgae and fungi to recognize each other, make physical contact and start developing a lichen thallus. Here, we studied cellular and extracellularly released phytohormones in three lichen mycobionts, Cladonia grayi, Xanthoria parietina and Tephromela atra, grown on solid medium, and the effects of indole-3-acetic acid (IAA) on their respective photobionts, Asterochloris glomerata, Trebouxia decolorans, Trebouxia sp. Using ultra-high-performance liquid chromatography coupled with tandem mass spectrometry (UHPLC-MS/MS) we found that mycobionts produced IAA, salicylic acid (SA) and jasmonic acid (JA). IAA represented the most abundant phytohormone produced and released by all mycobionts, whereas SA was released by X. parietina and T. atra, and JA was released by C. grayi only. With a half-life of 5.2 days, IAA degraded exponentially in solid BBM in dim light. When IAA was exogenously offered to the mycobionts' compatible photobionts at "physiological" concentrations (as released by their respective mycobionts and accumulated in the medium over seven days), the photobionts' water contents increased up to 4.4%. Treatment with IAA had no effects on the maximum quantum yield of photosystem II, dry mass, and the contents of photosynthetic pigments and α-tocopherol of the photobionts. The data presented may be useful for designing studies aimed at elucidating the roles of phytohormones in lichens.
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Affiliation(s)
- Gregor Pichler
- Department of Botany, University of Innsbruck, Sternwartestraße 15, 6020 Innsbruck, Austria
| | - Wolfgang Stöggl
- Department of Botany, University of Innsbruck, Sternwartestraße 15, 6020 Innsbruck, Austria
| | - Daniela Trippel
- Department of Botany, University of Innsbruck, Sternwartestraße 15, 6020 Innsbruck, Austria
| | - Fabio Candotto Carniel
- Department of Life Sciences, University of Trieste, Via Giorgieri 10, 34127 Trieste, Italy
| | - Lucia Muggia
- Department of Life Sciences, University of Trieste, Via Giorgieri 10, 34127 Trieste, Italy
| | - Claudio Gennaro Ametrano
- Department of Life Sciences, University of Trieste, Via Giorgieri 10, 34127 Trieste, Italy
- Grainger Bioinformatics Center, The Field Museum, 1400 S. Lake Shore Dr, Chicago, IL 60605 USA
| | - Tuğçe Çimen
- Department of Botany, University of Innsbruck, Sternwartestraße 15, 6020 Innsbruck, Austria
- Department of Molecular Biology and Genetics, İzmir Institute of Technology, 35430 Izmir, Turkey
| | - Andreas Holzinger
- Department of Botany, University of Innsbruck, Sternwartestraße 15, 6020 Innsbruck, Austria
| | - Mauro Tretiach
- Department of Life Sciences, University of Trieste, Via Giorgieri 10, 34127 Trieste, Italy
| | - Ilse Kranner
- Department of Botany, University of Innsbruck, Sternwartestraße 15, 6020 Innsbruck, Austria
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Sakarika M, Spanoghe J, Sui Y, Wambacq E, Grunert O, Haesaert G, Spiller M, Vlaeminck SE. Purple non-sulphur bacteria and plant production: benefits for fertilization, stress resistance and the environment. Microb Biotechnol 2020; 13:1336-1365. [PMID: 31432629 PMCID: PMC7415370 DOI: 10.1111/1751-7915.13474] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2019] [Revised: 07/23/2019] [Accepted: 07/26/2019] [Indexed: 11/28/2022] Open
Abstract
Purple non-sulphur bacteria (PNSB) are phototrophic microorganisms, which increasingly gain attention in plant production due to their ability to produce and accumulate high-value compounds that are beneficial for plant growth. Remarkable features of PNSB include the accumulation of polyphosphate, the production of pigments and vitamins and the production of plant growth-promoting substances (PGPSs). Scattered case studies on the application of PNSB for plant cultivation have been reported for decades, yet a comprehensive overview is lacking. This review highlights the potential of using PNSB in plant production, with emphasis on three key performance indicators (KPIs): fertilization, resistance to stress (biotic and abiotic) and environmental benefits. PNSB have the potential to enhance plant growth performance, increase the yield and quality of edible plant biomass, boost the resistance to environmental stresses, bioremediate heavy metals and mitigate greenhouse gas emissions. Here, the mechanisms responsible for these attributes are discussed. A distinction is made between the use of living and dead PNSB cells, where critical interpretation of existing literature revealed the better performance of living cells. Finally, this review presents research gaps that remain yet to be elucidated and proposes a roadmap for future research and implementation paving the way for a more sustainable crop production.
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Affiliation(s)
- Myrsini Sakarika
- Research Group of Sustainable Air, Energy and Water TechnologyDepartment of Bioscience EngineeringUniversity of AntwerpGroenenborgerlaan 1712020AntwerpenBelgium
| | - Janne Spanoghe
- Research Group of Sustainable Air, Energy and Water TechnologyDepartment of Bioscience EngineeringUniversity of AntwerpGroenenborgerlaan 1712020AntwerpenBelgium
| | - Yixing Sui
- Research Group of Sustainable Air, Energy and Water TechnologyDepartment of Bioscience EngineeringUniversity of AntwerpGroenenborgerlaan 1712020AntwerpenBelgium
| | - Eva Wambacq
- Department of Plants and CropsFaculty of Bioscience EngineeringGhent UniversityV. Vaerwyckweg 19000GhentBelgium
| | - Oliver Grunert
- Greenyard Horticulture Belgium NVSkaldenstraat 7a9042GentBelgium
| | - Geert Haesaert
- Department of Plants and CropsFaculty of Bioscience EngineeringGhent UniversityV. Vaerwyckweg 19000GhentBelgium
| | - Marc Spiller
- Research Group of Sustainable Air, Energy and Water TechnologyDepartment of Bioscience EngineeringUniversity of AntwerpGroenenborgerlaan 1712020AntwerpenBelgium
| | - Siegfried E. Vlaeminck
- Research Group of Sustainable Air, Energy and Water TechnologyDepartment of Bioscience EngineeringUniversity of AntwerpGroenenborgerlaan 1712020AntwerpenBelgium
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Isolates of the Nematophagous Fungus Pochonia chlamydosporia Are Endophytic in Banana Roots and Promote Plant Growth. AGRONOMY-BASEL 2020. [DOI: 10.3390/agronomy10091299] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
The biocontrol fungus Pochonia chlamydosporia colonizes banana roots endophytically. Root hairs and root surface were colonized by a stable GFP (green fluorescent protein) transformant of the fungus. Hyphal penetration in root cells was also observed. Spores of P. chlamydosporia 123, significantly increase root and leaf length and weight in banana plantlets (Musa acuminata cv. ‘Dwarf Cavendish’) in growth chamber experiments 30 days post-inoculation. In greenhouse 8-L pot experiments, P. chlamydosporia 123 spore inoculation significantly increases root, corm and leaf length, and leaf weight in banana plants (75 days post-inoculation). Spore inoculation of P. chlamydosporia strains from diverse origin (Pc21, Pc123, Pc399, and Pccat), significantly increase root, corm and leaf length and weight in banana plantlets. Pc21 from Italy was the best colonizer of banana roots. Consequently, this strain significantly increases banana root and leaf length most. Root colonization by P. chlamydosporia was also detected using cultural techniques and qPCR.
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Pigoleva SV, Zakharchenko NS, Furs OV, Tarlachkov SV, Funtikova TV, Filonov AE, Aripovskii AV, Dyachenko OV, Buryanov YI, Shevchuk TV. Effects of Associative Microorganisms on Plant Growth and Resistance to Xenobiotics and Phytopathogens. APPL BIOCHEM MICRO+ 2020. [DOI: 10.1134/s0003683820040134] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Pan L, Chen J, Ren S, Shen H, Rong B, Liu W, Yang Z. Complete genome sequence of Mycobacterium Mya-zh01, an endophytic bacterium, promotes plant growth and seed germination isolated from flower stalk of Doritaenopsis. Arch Microbiol 2020; 202:1965-1976. [DOI: 10.1007/s00203-020-01924-w] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2019] [Revised: 05/16/2020] [Accepted: 05/26/2020] [Indexed: 11/27/2022]
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Rassokhina II, Platonov AV, Laptev GY, Bolshakov VN. Morphophysical reaction of Hordeum vulgare to the influence of microbial preparations. REGULATORY MECHANISMS IN BIOSYSTEMS 2020. [DOI: 10.15421/022032] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
Bacterial preparations contribute to the digestion of mineral nutrition, have antifungicidal activity, increase the grain productivity and biomass of cultivated crops. We studied the influence of microbiological preparations developed on the basis of microorganisms Bacillus subtilis and Lactobacillus buchneri on the growth processes, photosynthetic parameters and grain productivity of barley (Hordeum vulgare L.) of Sonet variety. The experiments were performed in 2019 in the North-West of the Russian Federation. The biological preparations were introduced by soaking seeds and treatment of the plants in the phase of third leaf with solutions of the preparations in the concentration of 1 mL/L. The laboratory surveys revealed the positive effect of the biological preparations on germination rate and energy of germination of seeds. Field trials were conducted on micro plots in six replications. During field experiments, we determined that introduction of biological preparations led to significant increase in the leaf area in the experimental plants (to 64.5%), increase in average daily growth gains (to 82.9%) and accumulation of biomass (to 73.1%). Somewhat higher efficiency was exerted by the biological preparation developed on the basis of a strain of L. buchneri. Perhaps, such effect takes place due to higher activity of pigment units of phytohormones of the auxin group. In our opinion, biological preparations accelerate the completion of the ontogenesis phases, thus the plants more rapidly achieve their genetically programmed sizes and transform to the stage of ear-formation. The studied biological preparations increased the coefficient of agricultural use of plants, and grain productivity of barley by up to 15.8%, and nutritional value remained. Microbial preparations on the basis of B. subtilis and L. buchneri exhibited efficiency, and their trials shall be continued on other crops on industrial scales.
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Tiwari S, Prasad SM. Regulation of insecticide toxicity by kinetin in two paddy field cyanobacteria: Physiological and biochemical assessment. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2020; 259:113806. [PMID: 31891913 DOI: 10.1016/j.envpol.2019.113806] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Revised: 12/09/2019] [Accepted: 12/10/2019] [Indexed: 06/10/2023]
Abstract
The imprudent agricultural practices are leading to an increasing load of pesticides in agricultural fields. Thus, there is a need to minimize the harmful effect of pesticides by adopting sustainable strategies. In the recent past decade, kinetin, a plant synthetic hormone, has been reported as a pesticide toxicity alleviator in higher plants. But its role in mitigating pesticide toxicity in cyanobacteria is still limited. Thus, in current study an attempt has been made to investigate the potential of kinetin in regulating cypermethrin, an insecticide, induced toxicity in Anabaena PCC 7120 and Nostoc muscorum ATCC 27893. Cypermethrin (Cyp1; 2 μg ml-1 and Cyp2; 4 μg ml-1) showed negative impact on growth, photosynthetic pigments, photosynthetic O2-evolution and primary photochemistry of PS II (Phi_P0, Psi_0, Phi_E0) resulting in decrease in performance index (PIABS). However, under similar conditions, increases in energy flux parameters (ABS/RC, TR0/RC, ET0/RC and DI0/RC) were noticed. Cypermethrin at both the doses enhanced the level of oxidative stress biomarkers (SOR, H2O2, and MDA equivalent contents) despite of increased antioxidant enzymatic activity (SOD, POD, CAT and GST).Under similar condition, cypermethrin at tested doses caused substantial decrease in non-enzymatic antioxidant contents (proline, cysteine and NP-SH). Nevertheless, kinetin treatment attenuated cypermethrin induced oxidative stress by further up-regulating the activity of enzymatic antioxidants and by enhancing the contents of non-enzymatic antioxidants. Thus, with the application of kinetin improved photochemistry of PS II and growth yield of both the cyanobacteria were observed even in the presence of cypermethrin. Current results establish that cypermethrin induces toxicity on photosynthesis, photosynthetic pigments and growth, and this effect was more pronounced in Anabaena PCC 7120 than Nostoc muscorum ATCC 27893. Furthermore, the potential role of kinetin in mitigating the toxicity of cypermethrin in both the cyanobacteria provides an insight to be used in paddy fields for sustainable agricultural practices.
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Affiliation(s)
- Santwana Tiwari
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of Allahabad, Allahabad, 211002, India.
| | - Sheo Mohan Prasad
- Ranjan Plant Physiology and Biochemistry Laboratory, Department of Botany, University of Allahabad, Allahabad, 211002, India.
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Hajong S, Kapoor R. An amalgam of pathogenic and beneficial endophytic fungi colonizing four Dendrobium species from Meghalaya, India. J Basic Microbiol 2020; 60:415-423. [PMID: 32115755 DOI: 10.1002/jobm.201900631] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2019] [Revised: 01/24/2020] [Accepted: 02/07/2020] [Indexed: 11/06/2022]
Abstract
Endophytic fungi are known to play an important role in driving the evolution of plants by conferring adaptational advantages to their host through the production of secondary metabolites and phytohormones. In this study, we evaluated the diversity and phylogenetic relationship of endophytic fungal communities from four Dendrobium species viz., Dendrobium chrysanthum, Dendrobium heterocarpum, Dendrobium hookerianum, and Dendrobium longicornu of Meghalaya, India. A total of 51 culturable endophytic fungi were isolated from the four selected orchid species. The isolates were identified based on nuclear large subunit sequences into 33 species. Approximately 91% of the isolates showed affinity to Ascomycetes, while 9% of the isolates showed BLAST search similarity to Basidiomycetes. The most common genera were Trichoderma and Xylaria. The most prevalent genera were Fusarium, which was detected in all the four Dendrobium species followed by Diaporthe, which was present in three Dendrobium species viz., D. chrysanthum, D. hookerianum, and D. heterocarpum. The Shannon index value of endophytic fungal communities was the highest in D. chrysanthum (2.66), while D. longicornu (1) had the highest Evenness index. The present study revealed that endophytic fungi in these orchids are an amalgam of pathogenic and beneficial fungi, which have, at the least, switched their lifestyle to asymptomatic endophyte in their host. To our knowledge, this is the first such report on the diversity of endophytic fungi in the four selected Dendrobium species from Meghalaya, India.
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Affiliation(s)
- Subarna Hajong
- Regional Station Shillong, ICAR-National Bureau of Plant Genetic Resources, Umiam, Meghalaya, India
| | - Rupam Kapoor
- Deparment of Botany, University of Delhi, Delhi, India
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Rugiu L, Panova M, Pereyra RT, Jormalainen V. Gene regulatory response to hyposalinity in the brown seaweed Fucus vesiculosus. BMC Genomics 2020; 21:42. [PMID: 31931708 PMCID: PMC6958763 DOI: 10.1186/s12864-020-6470-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Accepted: 01/08/2020] [Indexed: 01/19/2023] Open
Abstract
BACKGROUND Rockweeds are among the most important foundation species of temperate rocky littoral shores. In the Baltic Sea, the rockweed Fucus vesiculosus is distributed along a decreasing salinity gradient from the North Atlantic entrance to the low-salinity regions in the north-eastern margins, thus, demonstrating a remarkable tolerance to hyposalinity. The underlying mechanisms for this tolerance are still poorly understood. Here, we exposed F. vesiculosus from two range-margin populations to the hyposaline (2.5 PSU - practical salinity unit) conditions that are projected to occur in the region by the end of this century as a result of climate change. We used transcriptome analysis (RNA-seq) to determine the gene expression patterns associated with hyposalinity acclimation, and examined the variation in these patterns between the sampled populations. RESULTS Hyposalinity induced different responses in the two populations: in one, only 26 genes were differentially expressed between salinity treatments, while the other population demonstrated up- or downregulation in 3072 genes. In the latter population, the projected future hyposalinity induced an acute response in terms of antioxidant production. Genes associated with membrane composition and structure were also heavily involved, with the upregulation of fatty acid and actin production, and the downregulation of ion channels and alginate pathways. Changes in gene expression patterns clearly indicated an inhibition of the photosynthetic machinery, with a consequent downregulation of carbohydrate production. Simultaneously, energy consumption increased, as revealed by the upregulation of genes associated with respiration and ATP synthesis. Overall, the genes that demonstrated the largest increase in expression were ribosomal proteins involved in translation pathways. The fixation rate of SNP:s was higher within genes responding to hyposalinity than elsewhere in the transcriptome. CONCLUSIONS The high fixation rate in the genes coding for salinity acclimation mechanisms implies strong selection for them. The among-population differentiation that we observed in the transcriptomic response to hyposalinity stress suggests that populations of F. vesiculosus may differ in their tolerance to future desalination, possibly as a result of local adaptation to salinity conditions within the Baltic Sea. These results emphasise the importance of considering interspecific genetic variation when evaluating the consequences of environmental change.
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Affiliation(s)
- Luca Rugiu
- Department of Marine Sciences –Tjärnö, University of Gothenburg, SE 452 96 Strömstad, Sweden
| | - Marina Panova
- Department of Marine Sciences –Tjärnö, University of Gothenburg, SE 452 96 Strömstad, Sweden
| | - Ricardo Tomás Pereyra
- Department of Marine Sciences –Tjärnö, University of Gothenburg, SE 452 96 Strömstad, Sweden
| | - Veijo Jormalainen
- Department of Biology, University of Turku, FIN-20014 Turku, Finland
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