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Soares CRFS, Hernández AG, da Silva EP, de Souza JEA, Bonfim DF, Zabot GL, Ferreira PAA, Brunetto G. Applications and Market of Micro-Organism-Based and Plant-Based Inputs in Brazilian Agriculture. PLANTS (BASEL, SWITZERLAND) 2023; 12:3844. [PMID: 38005741 PMCID: PMC10675046 DOI: 10.3390/plants12223844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Revised: 10/22/2023] [Accepted: 10/30/2023] [Indexed: 11/26/2023]
Abstract
The use of plant-based and micro-organism-based biological inputs is a sustainable agricultural practice. It promotes a suitable and better utilization of non-renewable resources in the environment. The benefits of using micro-organisms are associated with direct and indirect mechanisms, mainly related to improvements in the absorption and availability of nutrients, resulting in a consequent impact on plant growth. The main benefits of using biochemical pesticides are the promotion of sustainability and the management of resistance to pests and diseases. Although the use of micro-organisms and botanical metabolites is a promising agricultural alternative, they are still primarily concentrated in grain crops. There is a huge opportunity to expand the plant-based and micro-organism-based biological inputs used in agriculture due to the wide range of mechanisms of action of those products. At a global level, several terminologies have been adopted to characterize biological inputs, but many terms used conflict with Brazilian legislation. This review will clarify the classes of biological inputs existing in Brazil as well as present the application and evolution of the market for microbiological and plant-based inputs.
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Affiliation(s)
- Cláudio Roberto Fonsêca Sousa Soares
- Departamento de Microbiologia, Centro de Ciências Biológicas, Universidade Federal de Santa Catarina, Imunologia e Parasitologia, Campus Universitário Reitor João David Ferreira Lima, Trindade, Florianópolis 88040-900, SC, Brazil; (A.G.H.); (E.P.d.S.)
| | - Anabel González Hernández
- Departamento de Microbiologia, Centro de Ciências Biológicas, Universidade Federal de Santa Catarina, Imunologia e Parasitologia, Campus Universitário Reitor João David Ferreira Lima, Trindade, Florianópolis 88040-900, SC, Brazil; (A.G.H.); (E.P.d.S.)
| | - Emanuela Pille da Silva
- Departamento de Microbiologia, Centro de Ciências Biológicas, Universidade Federal de Santa Catarina, Imunologia e Parasitologia, Campus Universitário Reitor João David Ferreira Lima, Trindade, Florianópolis 88040-900, SC, Brazil; (A.G.H.); (E.P.d.S.)
| | | | - Danyella Fernandes Bonfim
- Agricultural Engineer, SHIN CA 9, Lt 13-15, Ed. Porto do Lago, Lago Norte, Brasília 71503-509, DF, Brazil;
| | - Giovani Leone Zabot
- Coordenação Acadêmica, Universidade Federal de Santa Maria, Campus Cachoeira do Sul, Cachoeira do Sul 96521-000, RS, Brazil; (G.L.Z.); (P.A.A.F.)
| | - Paulo Ademar Avelar Ferreira
- Coordenação Acadêmica, Universidade Federal de Santa Maria, Campus Cachoeira do Sul, Cachoeira do Sul 96521-000, RS, Brazil; (G.L.Z.); (P.A.A.F.)
| | - Gustavo Brunetto
- Departamento de Ciência do Solo, Universidade Federal de Santa Maria, Santa Maria 97105-900, RS, Brazil;
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Jung H, Lee D, Lee S, Kong HJ, Park J, Seo YS. Comparative genomic analysis of Chryseobacterium species: deep insights into plant-growth-promoting and halotolerant capacities. Microb Genom 2023; 9:001108. [PMID: 37796250 PMCID: PMC10634447 DOI: 10.1099/mgen.0.001108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Accepted: 09/17/2023] [Indexed: 10/06/2023] Open
Abstract
Members of the genus Chryseobacterium have attracted great interest as beneficial bacteria that can promote plant growth and biocontrol. Given the recent risks of climate change, it is important to develop tolerance strategies for efficient applications of plant-beneficial bacteria in saline environments. However, the genetic determinants of plant-growth-promoting and halotolerance effects in Chryseobacterium have not yet been investigated at the genomic level. Here, a comparative genomic analysis was conducted with seven Chryseobacterium species. Phylogenetic and phylogenomic analyses revealed niche-specific evolutionary distances between soil and freshwater Chryseobacterium species, consistent with differences in genomic statistics, indicating that the freshwater bacteria have smaller genome sizes and fewer genes than the soil bacteria. Phosphorus- and zinc-cycling genes (required for nutrient acquisition in plants) were universally present in all species, whereas nitrification and sulphite reduction genes (required for nitrogen- and sulphur-cycling, respectively) were distributed only in soil bacteria. A pan-genome containing 6842 gene clusters was constructed, which reflected the general features of the core, accessory and unique genomes. Halotolerant species with an accessory genome shared a Kdp potassium transporter and biosynthetic pathways for branched-chain amino acids and the carotenoid lycopene, which are associated with countermeasures against salt stress. Protein-protein interaction network analysis was used to define the genetic determinants of Chryseobacterium salivictor NBC122 that reduce salt damage in bacteria and plants. Sixteen hub genes comprised the aromatic compound degradation and Por secretion systems, which are required to cope with complex stresses associated with saline environments. Horizontal gene transfer and CRISPR-Cas analyses indicated that C. salivictor NBC122 underwent more evolutionary events when interacting with different environments. These findings provide deep insights into genomic adaptation to dynamic interactions between plant-growth-promoting Chryseobacterium and salt stress.
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Affiliation(s)
- Hyejung Jung
- Department of Integrated Biological Science, Pusan National University, Busan 46241, South Korea
- Biotechnology Research Division, National Institute of Fisheries Science, Busan 46083, South Korea
| | - Duyoung Lee
- Department of Integrated Biological Science, Pusan National University, Busan 46241, South Korea
| | - Seungchul Lee
- Department of Integrated Biological Science, Pusan National University, Busan 46241, South Korea
| | - Hee Jeong Kong
- Biotechnology Research Division, National Institute of Fisheries Science, Busan 46083, South Korea
| | - Jungwook Park
- Department of Integrated Biological Science, Pusan National University, Busan 46241, South Korea
- Biotechnology Research Division, National Institute of Fisheries Science, Busan 46083, South Korea
| | - Young-Su Seo
- Department of Integrated Biological Science, Pusan National University, Busan 46241, South Korea
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Ji C, Liang Z, Cao H, Chen Z, Kong X, Xin Z, He M, Wang J, Wei Z, Xing J, Li C, Zhang Y, Zhang H, Sun F, Li J, Li K. Transcriptome-based analysis of the effects of compound microbial agents on gene expression in wheat roots and leaves under salt stress. FRONTIERS IN PLANT SCIENCE 2023; 14:1109077. [PMID: 37235031 PMCID: PMC10206238 DOI: 10.3389/fpls.2023.1109077] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/27/2022] [Accepted: 04/17/2023] [Indexed: 05/28/2023]
Abstract
Introduction Salt stress inhibits the beneficial effects of most plant growth-promoting rhizobacteria. The synergistic relationship between beneficial rhizosphere microorganisms and plants helps achieve more stable growth-promoting effects. This study aimed 1) to elucidate changes in gene expression profiles in the roots and leaves of wheat after inoculation with compound microbial agents and 2) to determine the mechanisms by which plant growth-promoting rhizobacteria mediate plant responses to microorganisms. Methods Following inoculation with compound bacteria, transcriptome characteristics of gene expression profiles of wheat, roots, and leaves at the flowering stage were investigated using Illumina high-throughput sequencing technology. Gene ontology (GO) function and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were performed on the genes that were significantly differentially expressed. Results The expression of 231 genes in the roots of bacterial preparations (BIO) -inoculated wheat changed significantly (including 35 upregulated and 196 downregulated genes) compared with that of non-inoculated wheat. The expression of 16,321 genes in leaves changed significantly, including 9651 upregulated genes and 6670 downregulated genes. The differentially expressed genes were involved in the metabolism of carbohydrates, amino acids, and secondary compounds as well as signal transduction pathways. The ethylene receptor 1 gene in wheat leaves was significantly downregulated, and genes related to ethylene-responsive transcription factor were significantly upregulated. GO enrichment analysis showed that metabolic and cellular processes were the main functions affected in the roots and leaves. The main molecular functions altered were binding and catalytic activities, among which the cellular oxidant detoxification enrichment rate was highly expressed in the roots. The expression of peroxisome size regulation was the highest in the leaves. KEGG enrichment analysis showed that linoleic acid metabolism expression was highest in the roots, and the expression of photosynthesis-antenna proteins was the highest in leaves. After inoculation with a complex biosynthesis agent, the phenylalanine ammonia lyase (PAL) gene of the phenylpropanoid biosynthesis pathway was upregulated in wheat leaf cells while 4CL, CCR, and CYP73A were downregulated. Additionally, CYP98A and REF1 genes involved in the flavonoid biosynthesis pathway were upregulated, while F5H, HCT, CCR, E2.1.1.104, and TOGT1-related genes were downregulated. Discussion Differentially expressed genes may play key roles in improving salt tolerance in wheat. Compound microbial inoculants promoted the growth of wheat under salt stress and improved disease resistance by regulating the expression of metabolism-related genes in wheat roots and leaves and activating immune pathway-related genes.
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Affiliation(s)
- Chao Ji
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
- Taishan Forest Ecosystem Research Station, Key Laboratory of State Forestry Administration for Silviculture of the Lower Yellow River, Shandong Agricultural University, Taian, Shandong, China
| | - Zengwen Liang
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
- Shandong Yongsheng Agricultural Development Co., Ltd., Yongsheng (Shouguang) Vegetable Technology Research Institute Co., Ltd, Weifang, China
| | - Hui Cao
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
| | - Zhizhang Chen
- College of Foreign Languages, Weifang University, Weifang, Shandong, China
| | - Xuehua Kong
- Weifang Hanting Vestibule School, Weifang Education Bureau, Weifang, Shandong, China
| | - Zhiwen Xin
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
| | - Mingchao He
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
| | - Jie Wang
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
| | - Zichao Wei
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
| | - Jiahao Xing
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
| | - Chunyu Li
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
| | - Yingxiang Zhang
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
| | - Hua Zhang
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
| | - Fujin Sun
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Runxin Fruit and Vegetable Cultivation Cooperative of Weifang Economic Development Zone, Weifang Agricultural Bureau, Weifang, Shandong, China
| | - Jianlin Li
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Weifang Nuode Biotechnology Co., LTD, Weifang Agricultural Bureau, Weifang, Shandong, China
| | - Kun Li
- Taishan Forest Ecosystem Research Station, Key Laboratory of State Forestry Administration for Silviculture of the Lower Yellow River, Shandong Agricultural University, Taian, Shandong, China
- College of Forestry, Shandong Agriculture University, Taian, Shandong, China
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Alharbi K, Rashwan E, Hafez E, Omara AED, Mohamed HH, Alshaal T. Potassium Humate and Plant Growth-Promoting Microbes Jointly Mitigate Water Deficit Stress in Soybean Cultivated in Salt-Affected Soil. PLANTS (BASEL, SWITZERLAND) 2022; 11:3016. [PMID: 36432745 PMCID: PMC9698740 DOI: 10.3390/plants11223016] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 11/02/2022] [Accepted: 11/04/2022] [Indexed: 06/16/2023]
Abstract
Lack of high-quality irrigation water and soil salinity are two main environmental factors that affect plant development. When both stressors are combined, the soil becomes sterile and constrains plant productivity. Consequently, two field trials were designed to assess whether plant growth-promoting microbes (PGPMs; Bradyrhizobium japonicum (USDA 110) and Trichoderma harzianum) and potassium humate (K-humate) can stimulate soybean growth, productivity, and seed quality under two different watering regimes as follows: (i) well-watered (WW), where plants were irrigated at 12-day intervals (recommended), and (ii) water stress (WS), where plants were irrigated at the 18-day intervals in salt-affected soil during 2020 and 2021 seasons. Results revealed that coupled application of PGPMs and K-humate resulted in a substantial improvement in K+ levels in the leaves compared to Na+ levels, which has a direct positive impact on an enhancement in the antioxidants defense system (CAT, POX, SOD), which caused the decline of the oxidative stress indicators (H2O2, MDA, and EL%) as well as proline content under water stress in salt-affected soil. Hence, a significant increase in root length, nodule weight, soybean relative water content (RWC), stomatal conductance, photosynthetic pigments, net photosynthetic rate, soluble protein, seed carbohydrate content as well as the number of pods plant-1 and seed yield was reported. In conclusion, the combined application of PGPMs and K-humate might be recommended to maximize the soybean growth and productivity under harsh growth conditions (e.g., water stress and soil salinity).
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Affiliation(s)
- Khadiga Alharbi
- Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Emadeldeen Rashwan
- Agronomy Department, Faculty of Agriculture, Tanta University, Tanta 31527, Egypt
| | - Emad Hafez
- Department of Agronomy, Faculty of Agriculture, Kafrelsheikh University, Kafr El-Sheikh 33516, Egypt
| | - Alaa El-Dein Omara
- Agricultural Research Center, Microbiology, Soils, Water Environment Research Institute, Giza 12112, Egypt
| | - Hossam Hussein Mohamed
- Department of Agronomy, Faculty of Agriculture, Ain Shams University, Cairo 13625, Egypt
| | - Tarek Alshaal
- Soil and Water Department, Faculty of Agriculture, Kafrelsheikh University, Kafr El-Sheikh 33516, Egypt
- Department of Applied Plant Biology, Institute of Crop Sciences, University of Debrecen, Böszörményi Street 138, 4032 Debrecen, Hungary
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Denison RF, Muller KE. An evolutionary perspective on increasing net benefits to crops from symbiotic microbes. Evol Appl 2022; 15:1490-1504. [PMID: 36330301 PMCID: PMC9624085 DOI: 10.1111/eva.13384] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 04/05/2022] [Accepted: 04/06/2022] [Indexed: 11/30/2022] Open
Abstract
Plant‐imposed, fitness‐reducing sanctions against less‐beneficial symbionts have been documented for rhizobia, mycorrhizal fungi, and fig wasps. Although most of our examples are for rhizobia, we argue that the evolutionary persistence of mutualism in any symbiosis would require such sanctions, if there are multiple symbiont genotypes per host plant. We therefore discuss methods that could be used to develop and assess crops with stricter sanctions. These include methods to screen strains for greater mutualism as resources to identify crop genotypes that impose stronger selection for mutualism. Single‐strain experiments that measure costs as well as benefits have shown that diversion of resources by rhizobia can reduce nitrogen‐fixation efficiency (N per C) and that some legumes can increase this efficiency by manipulating their symbionts. Plants in the field always host multiple strains with possible synergistic interactions, so benefits from different strains might best be compared by regressing plant growth or yield on each strain's abundance in a mixture. However, results from this approach have not yet been published. To measure legacy effects of stronger sanctions on future crops, single‐genotype test crops could be planted in a field that recently had replicated plots with different genotypes of the sanction‐imposing crop. Enhancing agricultural benefits from symbiosis may require accepting tradeoffs that constrained past natural selection, including tradeoffs between current and future benefits.
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Affiliation(s)
- R. Ford Denison
- Ecology Evolution and Behavior University of Minnesota Twin Cities Saint Paul USA
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Katiyar P, Kumar S, Arora NK. Interactions of Nitrogen-Fixing Bacteria and Cereal Crops: An Important Dimension. NITROGEN FIXING BACTERIA: SUSTAINABLE GROWTH OF NON-LEGUMES 2022:169-194. [DOI: 10.1007/978-981-19-4906-7_8] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/26/2024]
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Saeed Q, Xiukang W, Haider FU, Kučerik J, Mumtaz MZ, Holatko J, Naseem M, Kintl A, Ejaz M, Naveed M, Brtnicky M, Mustafa A. Rhizosphere Bacteria in Plant Growth Promotion, Biocontrol, and Bioremediation of Contaminated Sites: A Comprehensive Review of Effects and Mechanisms. Int J Mol Sci 2021; 22:10529. [PMID: 34638870 PMCID: PMC8509026 DOI: 10.3390/ijms221910529] [Citation(s) in RCA: 73] [Impact Index Per Article: 24.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2021] [Revised: 09/23/2021] [Accepted: 09/27/2021] [Indexed: 01/23/2023] Open
Abstract
Agriculture in the 21st century is facing multiple challenges, such as those related to soil fertility, climatic fluctuations, environmental degradation, urbanization, and the increase in food demand for the increasing world population. In the meanwhile, the scientific community is facing key challenges in increasing crop production from the existing land base. In this regard, traditional farming has witnessed enhanced per acre crop yields due to irregular and injudicious use of agrochemicals, including pesticides and synthetic fertilizers, but at a substantial environmental cost. Another major concern in modern agriculture is that crop pests are developing pesticide resistance. Therefore, the future of sustainable crop production requires the use of alternative strategies that can enhance crop yields in an environmentally sound manner. The application of rhizobacteria, specifically, plant growth-promoting rhizobacteria (PGPR), as an alternative to chemical pesticides has gained much attention from the scientific community. These rhizobacteria harbor a number of mechanisms through which they promote plant growth, control plant pests, and induce resistance to various abiotic stresses. This review presents a comprehensive overview of the mechanisms of rhizobacteria involved in plant growth promotion, biocontrol of pests, and bioremediation of contaminated soils. It also focuses on the effects of PGPR inoculation on plant growth survival under environmental stress. Furthermore, the pros and cons of rhizobacterial application along with future directions for the sustainable use of rhizobacteria in agriculture are discussed in depth.
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Affiliation(s)
- Qudsia Saeed
- College of Natural Resources and Environment, Northwest Agriculture and Forestry University, Yangling 712100, China;
| | - Wang Xiukang
- College of Life Sciences, Yan’an University, Yan’an 716000, China
| | - Fasih Ullah Haider
- College of Resources and Environmental Sciences, Gansu Agricultural University, Lanzhou 730070, China;
| | - Jiří Kučerik
- Institute of Chemistry and Technology of Environmental Protection, Faculty of Chemistry, Brno University of Technology, Purkynova 118, 612 00 Brno, Czech Republic; (J.K.); (M.B.)
| | - Muhammad Zahid Mumtaz
- Institute of Molecular Biology and Biotechnology, The University of Lahore, Defense Road, Lahore 54000, Pakistan;
| | - Jiri Holatko
- Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of AgriSciences, Mendel University in Brno, Zemedelska 1, 613 00 Brno, Czech Republic; (J.H.); (A.K.)
| | - Munaza Naseem
- Institute of Soil and Environmental Science, University of Agriculture Faisalabad, Faisalabad 38040, Pakistan; (M.N.); (M.N.)
| | - Antonin Kintl
- Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of AgriSciences, Mendel University in Brno, Zemedelska 1, 613 00 Brno, Czech Republic; (J.H.); (A.K.)
- Agricultural Research, Ltd., Zahradni 400/1, 664 41 Troubsko, Czech Republic
| | - Mukkaram Ejaz
- School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou 730070, China;
| | - Muhammad Naveed
- Institute of Soil and Environmental Science, University of Agriculture Faisalabad, Faisalabad 38040, Pakistan; (M.N.); (M.N.)
| | - Martin Brtnicky
- Institute of Chemistry and Technology of Environmental Protection, Faculty of Chemistry, Brno University of Technology, Purkynova 118, 612 00 Brno, Czech Republic; (J.K.); (M.B.)
- Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of AgriSciences, Mendel University in Brno, Zemedelska 1, 613 00 Brno, Czech Republic; (J.H.); (A.K.)
| | - Adnan Mustafa
- Biology Center CAS, SoWa RI, Na Sadkach 7, 370 05 České Budějovice, Czech Republic
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Basile LA, Lepek VC. Legume-rhizobium dance: an agricultural tool that could be improved? Microb Biotechnol 2021; 14:1897-1917. [PMID: 34318611 PMCID: PMC8449669 DOI: 10.1111/1751-7915.13906] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2020] [Revised: 07/15/2021] [Accepted: 07/19/2021] [Indexed: 12/29/2022] Open
Abstract
The specific interaction between rhizobia and legume roots leads to the development of a highly regulated process called nodulation, by which the atmospheric nitrogen is converted into an assimilable plant nutrient. This capacity is the basis for the use of bacterial inoculants for field crop cultivation. Legume plants have acquired tools that allow the entry of compatible bacteria. Likewise, plants can impose sanctions against the maintenance of nodules occupied by rhizobia with low nitrogen-fixing capacity. At the same time, bacteria must overcome different obstacles posed first by the environment and then by the legume. The present review describes the mechanisms involved in the regulation of the entire legume-rhizobium symbiotic process and the strategies and tools of bacteria for reaching the nitrogen-fixing state inside the nodule. Also, we revised different approaches to improve the nodulation process for a better crop yield.
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Affiliation(s)
- Laura A. Basile
- Instituto de Investigaciones Biotecnológicas “Dr. Rodolfo A. Ugalde”Universidad Nacional de San Martín (IIB‐UNSAM‐CONICET)Av. 25 de Mayo y Francia, Gral. San Martín, Provincia de Buenos AiresBuenos AiresB1650HMPArgentina
| | - Viviana C. Lepek
- Instituto de Investigaciones Biotecnológicas “Dr. Rodolfo A. Ugalde”Universidad Nacional de San Martín (IIB‐UNSAM‐CONICET)Av. 25 de Mayo y Francia, Gral. San Martín, Provincia de Buenos AiresBuenos AiresB1650HMPArgentina
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Mendoza-Suárez M, Andersen SU, Poole PS, Sánchez-Cañizares C. Competition, Nodule Occupancy, and Persistence of Inoculant Strains: Key Factors in the Rhizobium-Legume Symbioses. FRONTIERS IN PLANT SCIENCE 2021; 12:690567. [PMID: 34489993 PMCID: PMC8416774 DOI: 10.3389/fpls.2021.690567] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2021] [Accepted: 07/19/2021] [Indexed: 05/06/2023]
Abstract
Biological nitrogen fixation by Rhizobium-legume symbioses represents an environmentally friendly and inexpensive alternative to the use of chemical nitrogen fertilizers in legume crops. Rhizobial inoculants, applied frequently as biofertilizers, play an important role in sustainable agriculture. However, inoculants often fail to compete for nodule occupancy against native rhizobia with inferior nitrogen-fixing abilities, resulting in low yields. Strains with excellent performance under controlled conditions are typically selected as inoculants, but the rates of nodule occupancy compared to native strains are rarely investigated. Lack of persistence in the field after agricultural cycles, usually due to the transfer of symbiotic genes from the inoculant strain to naturalized populations, also limits the suitability of commercial inoculants. When rhizobial inoculants are based on native strains with a high nitrogen fixation ability, they often have superior performance in the field due to their genetic adaptations to the local environment. Therefore, knowledge from laboratory studies assessing competition and understanding how diverse strains of rhizobia behave, together with assays done under field conditions, may allow us to exploit the effectiveness of native populations selected as elite strains and to breed specific host cultivar-rhizobial strain combinations. Here, we review current knowledge at the molecular level on competition for nodulation and the advances in molecular tools for assessing competitiveness. We then describe ongoing approaches for inoculant development based on native strains and emphasize future perspectives and applications using a multidisciplinary approach to ensure optimal performance of both symbiotic partners.
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Affiliation(s)
| | - Stig U. Andersen
- Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark
| | - Philip S. Poole
- Department of Plant Sciences, University of Oxford, Oxford, United Kingdom
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Bach E, Passaglia LMP, Jiao J, Gross H. Burkholderia in the genomic era: from taxonomy to the discovery of new antimicrobial secondary metabolites. Crit Rev Microbiol 2021; 48:121-160. [PMID: 34346791 DOI: 10.1080/1040841x.2021.1946009] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
Species of Burkholderia are highly versatile being found not only abundantly in soil, but also as plants and animals' commensals or pathogens. Their complex multireplicon genomes harbour an impressive number of polyketide synthase (PKS) and nonribosomal peptide-synthetase (NRPS) genes coding for the production of antimicrobial secondary metabolites (SMs), which have been successfully deciphered by genome-guided tools. Moreover, genome metrics supported the split of this genus into Burkholderia sensu stricto (s.s.) and five new other genera. Here, we show that the successful antimicrobial SMs producers belong to Burkholderia s.s. Additionally, we reviewed the occurrence, bioactivities, modes of action, structural, and biosynthetic information of thirty-eight Burkholderia antimicrobial SMs shedding light on their diversity, complexity, and uniqueness as well as the importance of genome-guided strategies to facilitate their discovery. Several Burkholderia NRPS and PKS display unusual features, which are reflected in their structural diversity, important bioactivities, and varied modes of action. Up to now, it is possible to observe a general tendency of Burkholderia SMs being more active against fungi. Although the modes of action and biosynthetic gene clusters of many SMs remain unknown, we highlight the potential of Burkholderia SMs as alternatives to fight against new diseases and antibiotic resistance.
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Affiliation(s)
- Evelise Bach
- Departamento de Genética and Programa de Pós-graduação em Genética e Biologia Molecular, Instituto de Biociências, Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Brazil
| | - Luciane Maria Pereira Passaglia
- Departamento de Genética and Programa de Pós-graduação em Genética e Biologia Molecular, Instituto de Biociências, Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Brazil
| | - Junjing Jiao
- Department for Pharmaceutical Biology, Pharmaceutical Institute, University of Tübingen, Tübingen, Germany
| | - Harald Gross
- Department for Pharmaceutical Biology, Pharmaceutical Institute, University of Tübingen, Tübingen, Germany
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11
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Ghosh P, Adolphsen KN, Yurgel SN, Kahn ML. Sinorhizobium medicae WSM419 Genes That Improve Symbiosis between Sinorhizobium meliloti Rm1021 and Medicago truncatula Jemalong A17 and in Other Symbiosis Systems. Appl Environ Microbiol 2021; 87:e0300420. [PMID: 33990306 PMCID: PMC8276806 DOI: 10.1128/aem.03004-20] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Accepted: 05/10/2021] [Indexed: 11/20/2022] Open
Abstract
Some soil bacteria, called rhizobia, can interact symbiotically with legumes, in which they form nodules on the plant roots, where they can reduce atmospheric dinitrogen to ammonia, a form of nitrogen that can be used by growing plants. Rhizobium-plant combinations can differ in how successful this symbiosis is: for example, Sinorhizobium meliloti Rm1021 forms a relatively ineffective symbiosis with Medicago truncatula Jemalong A17, but Sinorhizobium medicae WSM419 is able to support more vigorous plant growth. Using proteomic data from free-living and symbiotic S. medicae WSM419, we previously identified a subset of proteins that were not closely related to any S. meliloti Rm1021 proteins and speculated that adding one or more of these proteins to S. meliloti Rm1021 would increase its effectiveness on M. truncatula A17. Three genes, Smed_3503, Smed_5985, and Smed_6456, were cloned into S. meliloti Rm1021 downstream of the E. coli lacZ promoter. Strains with these genes increased nodulation and improved plant growth, individually and in combination with one another. Smed_3503, renamed iseA (increased symbiotic effectiveness), had the largest impact, increasing M. truncatula biomass by 61%. iseA homologs were present in all currently sequenced S. medicae strains but were infrequent in other Sinorhizobium isolates. Rhizobium leguminosarum bv. viciae 3841 containing iseA led to more nodules on pea and lentil. Split-root experiments with M. truncatula A17 indicated that S. meliloti Rm1021 carrying the S. medicae iseA is less sensitive to plant-induced resistance to rhizobial infection, suggesting an interaction with the plant's regulation of nodule formation. IMPORTANCE Legume symbiosis with rhizobia is highly specific. Rhizobia that can nodulate and fix nitrogen on one legume species are often unable to associate with a different species. The interaction can be more subtle. Symbiotically enhanced growth of the host plant can differ substantially when nodules are formed by different rhizobial isolates of a species, much like disease severity can differ when conspecific isolates of pathogenic bacteria infect different cultivars. Much is known about bacterial genes essential for a productive symbiosis, but less is understood about genes that marginally improve performance. We used a proteomic strategy to identify Sinorhizobium genes that contribute to plant growth differences that are seen when two different strains nodulate M. truncatula A17. These genes could also alter the symbiosis between R. leguminosarum bv. viciae 3841 and pea or lentil, suggesting that this approach identifies new genes that may more generally contribute to symbiotic productivity.
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Affiliation(s)
- Prithwi Ghosh
- Institute of Biological Chemistry, Washington State University, Pullman, Washington, USA
| | - Katie N. Adolphsen
- Institute of Biological Chemistry, Washington State University, Pullman, Washington, USA
- School of Molecular Biosciences, Washington State University, Pullman, Washington, USA
| | - Svetlana N. Yurgel
- Institute of Biological Chemistry, Washington State University, Pullman, Washington, USA
| | - Michael L. Kahn
- Institute of Biological Chemistry, Washington State University, Pullman, Washington, USA
- School of Molecular Biosciences, Washington State University, Pullman, Washington, USA
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12
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Identification of Plant Growth Promoting Rhizobacteria That Improve the Performance of Greenhouse-Grown Petunias under Low Fertility Conditions. PLANTS 2021; 10:plants10071410. [PMID: 34371613 PMCID: PMC8309264 DOI: 10.3390/plants10071410] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Revised: 07/02/2021] [Accepted: 07/07/2021] [Indexed: 11/22/2022]
Abstract
The production of greenhouse ornamentals relies on high fertilizer inputs to meet scheduling deadlines and quality standards, but overfertilization has negative environmental impacts. The goals of this study were to identify plant-growth-promoting rhizobacteria (PGPR) that can improve greenhouse ornamental crop performance with reduced fertilizer inputs, and to identify the best measurements of plant performance for assessing the beneficial impact of PGPR on ornamentals. A high-throughput greenhouse trial was used to identify 14 PGPR isolates that improved the flower/bud number and shoot dry weight of Petunia × hybrida ‘Picobella Blue’ grown under low fertility conditions in peat-based media. These 14 PGPR were then applied to petunias grown under low fertility conditions (25 mg L−1 N). PGPR-treated plants were compared to negative (untreated at 25 mg L−1 N) and positive (untreated at 50, 75, 100, and 150 mg L−1 N) controls. Multiple parameters were measured in the categories of flowering, vegetative growth, and vegetative quality to determine the best measurements to assess improvements in ornamental plant performance. Caballeronia zhejiangensis C7B12-treated plants performed better in almost all parameters and were comparable to untreated plants fertilized with 50 mg L−1 N. Genomic analysis identified genes that were potentially involved in plant growth promotion. Our study identified potential PGPR that can be used as biostimulants to produce high-quality greenhouse ornamentals with lower fertilizer inputs.
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González-Morales S, Solís-Gaona S, Valdés-Caballero MV, Juárez-Maldonado A, Loredo-Treviño A, Benavides-Mendoza A. Transcriptomics of Biostimulation of Plants Under Abiotic Stress. Front Genet 2021; 12:583888. [PMID: 33613631 PMCID: PMC7888440 DOI: 10.3389/fgene.2021.583888] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Accepted: 01/06/2021] [Indexed: 12/20/2022] Open
Abstract
Plant biostimulants are compounds, living microorganisms, or their constituent parts that alter plant development programs. The impact of biostimulants is manifested in several ways: via morphological, physiological, biochemical, epigenomic, proteomic, and transcriptomic changes. For each of these, a response and alteration occur, and these alterations in turn improve metabolic and adaptive performance in the environment. Many studies have been conducted on the effects of different biotic and abiotic stimulants on plants, including many crop species. However, as far as we know, there are no reviews available that describe the impact of biostimulants for a specific field such as transcriptomics, which is the objective of this review. For the commercial registration process of products for agricultural use, it is necessary to distinguish the specific impact of biostimulants from that of other legal categories of products used in agriculture, such as fertilizers and plant hormones. For the chemical or biological classification of biostimulants, the classification is seen as a complex issue, given the great diversity of compounds and organisms that cause biostimulation. However, with an approach focused on the impact on a particular field such as transcriptomics, it is perhaps possible to obtain a criterion that allows biostimulants to be grouped considering their effects on living systems, as well as the overlap of the impact on metabolism, physiology, and morphology occurring between fertilizers, hormones, and biostimulants.
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14
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Eichmann R, Richards L, Schäfer P. Hormones as go-betweens in plant microbiome assembly. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 105:518-541. [PMID: 33332645 PMCID: PMC8629125 DOI: 10.1111/tpj.15135] [Citation(s) in RCA: 71] [Impact Index Per Article: 23.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 12/10/2020] [Accepted: 12/11/2020] [Indexed: 05/04/2023]
Abstract
The interaction of plants with complex microbial communities is the result of co-evolution over millions of years and contributed to plant transition and adaptation to land. The ability of plants to be an essential part of complex and highly dynamic ecosystems is dependent on their interaction with diverse microbial communities. Plant microbiota can support, and even enable, the diverse functions of plants and are crucial in sustaining plant fitness under often rapidly changing environments. The composition and diversity of microbiota differs between plant and soil compartments. It indicates that microbial communities in these compartments are not static but are adjusted by the environment as well as inter-microbial and plant-microbe communication. Hormones take a crucial role in contributing to the assembly of plant microbiomes, and plants and microbes often employ the same hormones with completely different intentions. Here, the function of hormones as go-betweens between plants and microbes to influence the shape of plant microbial communities is discussed. The versatility of plant and microbe-derived hormones essentially contributes to the creation of habitats that are the origin of diversity and, thus, multifunctionality of plants, their microbiota and ultimately ecosystems.
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Affiliation(s)
- Ruth Eichmann
- Institute of Molecular BotanyUlm UniversityUlm89069Germany
| | - Luke Richards
- School of Life SciencesUniversity of WarwickCoventryCV4 7ALUK
| | - Patrick Schäfer
- Institute of Molecular BotanyUlm UniversityUlm89069Germany
- School of Life SciencesUniversity of WarwickCoventryCV4 7ALUK
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15
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Bhat MA, Kumar V, Bhat MA, Wani IA, Dar FL, Farooq I, Bhatti F, Koser R, Rahman S, Jan AT. Mechanistic Insights of the Interaction of Plant Growth-Promoting Rhizobacteria (PGPR) With Plant Roots Toward Enhancing Plant Productivity by Alleviating Salinity Stress. Front Microbiol 2020; 11:1952. [PMID: 32973708 PMCID: PMC7468593 DOI: 10.3389/fmicb.2020.01952] [Citation(s) in RCA: 72] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Accepted: 07/24/2020] [Indexed: 11/20/2022] Open
Abstract
Agriculture plays an important role in a country's economy. The sector is challenged by many stresses, which led to huge loss in plant productivity worldwide. The ever-increasing population, rapid urbanization with shrinking agricultural lands, dramatic change in climatic conditions, and extensive use of agrochemicals in agricultural practices that caused environmental disturbances confront mankind of escalating problems of food security and sustainability in agriculture. Escalating environmental problems and global hunger have led to the development and adoption of genetic engineering and other conventional plant breeding approaches in developing stress-tolerant varieties of crops. However, these approaches have drawn flaws in their adoption as the process of generating tolerant varieties takes months to years in bringing the technology from the lab to the field. Under such scenario, sustainable and climate-smart agricultural practices that avail bacterial usage open the avenues in fulfilling the incessant demand for food for the global population. Ensuring stability on economic fronts, bacteria minimizes plant salt uptake by trapping ions in their exopolysaccharide matrix besides checking the expression of Na+/H+ and high-affinity potassium transporters. Herein we describe information on salinity stress and its effect on plant health as well as strategies adopted by plant growth-promoting rhizobacteria (PGPR) in helping plants to overcome salinity stress and in mitigating loss in overall plant productivity. It is believed that acquisition of advanced knowledge of plant-beneficial PGPR will help in devising strategies for sustainable, environment-friendly, and climate-smart agricultural technologies for adoption in agriculture to overcome the constrained environmental conditions.
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Affiliation(s)
- Mujtaba Aamir Bhat
- Department of Botany, School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri, India
| | - Vijay Kumar
- Department of Biotechnology, Yeungnam University, Gyeongsan, South Korea
| | - Mudasir Ahmad Bhat
- Department of Biotechnology, School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri, India
| | - Ishfaq Ahmad Wani
- Department of Botany, School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri, India
| | - Farhana Latief Dar
- Department of Botany, School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri, India
| | - Iqra Farooq
- Department of Botany, School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri, India
| | - Farha Bhatti
- Department of Botany, School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri, India
| | - Rubina Koser
- Department of Microbiology, School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri, India
| | - Safikur Rahman
- Department of Botany, Munshi Singh College, Babasaheb Bhimrao Ambedkar Bihar University, Muzaffarpur, India
| | - Arif Tasleem Jan
- Department of Botany, School of Biosciences and Biotechnology, Baba Ghulam Shah Badshah University, Rajouri, India
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Chomicki G, Werner GDA, West SA, Kiers ET. Compartmentalization drives the evolution of symbiotic cooperation. Philos Trans R Soc Lond B Biol Sci 2020; 375:20190602. [PMID: 32772665 DOI: 10.1098/rstb.2019.0602] [Citation(s) in RCA: 47] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Across the tree of life, hosts have evolved mechanisms to control and mediate interactions with symbiotic partners. We suggest that the evolution of physical structures that allow hosts to spatially separate symbionts, termed compartmentalization, is a common mechanism used by hosts. Such compartmentalization allows hosts to: (i) isolate symbionts and control their reproduction; (ii) reward cooperative symbionts and punish or stop interactions with non-cooperative symbionts; and (iii) reduce direct conflict among different symbionts strains in a single host. Compartmentalization has allowed hosts to increase the benefits that they obtain from symbiotic partners across a diversity of interactions, including legumes and rhizobia, plants and fungi, squid and Vibrio, insects and nutrient provisioning bacteria, plants and insects, and the human microbiome. In cases where compartmentalization has not evolved, we ask why not. We argue that when partners interact in a competitive hierarchy, or when hosts engage in partnerships which are less costly, compartmentalization is less likely to evolve. We conclude that compartmentalization is key to understanding the evolution of symbiotic cooperation. This article is part of the theme issue 'The role of the microbiome in host evolution'.
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Affiliation(s)
- Guillaume Chomicki
- Department of Biosciences, Durham University, Stockton Road, Durham DH1 3LE, UK
| | - Gijsbert D A Werner
- Department of Zoology, University of Oxford, Zoology Research and Administration Building, 11a Mansfield Road, Oxford OX1 3SZ, UK.,Netherlands Scientific Council for Government Policy, Buitenhof 34, 2513 AH Den Haag, The Netherlands
| | - Stuart A West
- Department of Zoology, University of Oxford, Zoology Research and Administration Building, 11a Mansfield Road, Oxford OX1 3SZ, UK
| | - E Toby Kiers
- Department of Ecological Science, VU University, Amsterdam, The Netherlands
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17
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Ji C, Liu Z, Hao L, Song X, Wang C, Liu Y, Li H, Li C, Gao Q, Liu X. Effects of Enterobacter cloacae HG-1 on the Nitrogen-Fixing Community Structure of Wheat Rhizosphere Soil and on Salt Tolerance. FRONTIERS IN PLANT SCIENCE 2020; 11:1094. [PMID: 32765571 PMCID: PMC7380250 DOI: 10.3389/fpls.2020.01094] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2019] [Accepted: 07/03/2020] [Indexed: 05/19/2023]
Abstract
The present study investigated the physiological and biochemical characteristics of Enterobacter cloacae HG-1 isolated from saline-alkali soil. We further studied the effect of this strain on the salt tolerance of wheat and on the community structure of nitrogen-fixing bacteria in rhizosphere soil. We determined that the investigated strain had high nitrogen fixation activity and produced iron carriers, 1-aminocyclopropane-1-carboxylic acid deaminase, and plant hormones. The metabolites of this strain contained 2,3-butanediol, [R-(R*, R*)], 2-heptanone, and other growth-promoting and antibacterial substances. The strain was also highly salt-tolerant (10% NaCl). After the inoculation of wheat with the HG-1 strain, we recorded increases in root length, plant height, fresh weight, and dry weight of 19.15%, 18.83%, 16.67%, and 17.96%, respectively, compared with uninoculated plants (P < 0.05). Compared with the leaves of uninoculated plants, the proline concentration in the leaves of inoculated plants increased by 12.43% (P < 0.05), the malondialdehyde level decreased by 27.26% (P < 0.05), K+ increased by 20.69%, Ca2+ increased by 57.53% and Na+ decreased by 31.43% (all P<0.05). Furthermore, we detected that inoculation with the HG-1 strain did not affect the species composition of nitrogen-fixing bacteria in wheat rhizosphere soil at the phylum level. However, the average relative abundance of Proteobacteria was significantly increased, whereas the abundance of Verrucomiorobia was significantly decreased compared with uninoculated plants. At the genus level, we detected 32 genera in control samples and 27 genera in inoculated samples, and the species diversity and relative abundance of samples inoculated with the HG-1 strain decreased compared with uninoculated plants. Inoculated samples had lower abundances of Azospirillum, Rhodomicrobium, and Anabaena. Our study demonstrated that the inoculation of wheat with E. cloacae HG-1 could promote the growth of wheat under salt stress and increase salt stress tolerance. The results of this study investigating the interaction among soil, plants, and microorganisms supplement agricultural microbial databases and could provide a reference for the development of microbial-based saline soil improvement programs.
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Affiliation(s)
- Chao Ji
- College of Forestry, Shandong Agriculture University, Taian, China
- State Forestry and Grassland Administration Key Laboratory of Silviculture in Downstream Areas of the Yellow River, Taian, China
| | - Zhaoyang Liu
- College of Forestry, Shandong Agriculture University, Taian, China
| | - Liping Hao
- College of Plant Conservation, Shandong Agriculture University, Taian, China
| | - Xin Song
- College of Forestry, Shandong Agriculture University, Taian, China
- State Forestry and Grassland Administration Key Laboratory of Silviculture in Downstream Areas of the Yellow River, Taian, China
| | - Changdong Wang
- College of Forestry, Shandong Agriculture University, Taian, China
| | - Yue Liu
- College of Forestry, Shandong Agriculture University, Taian, China
| | - Huying Li
- College of Forestry, Shandong Agriculture University, Taian, China
- State Forestry and Grassland Administration Key Laboratory of Silviculture in Downstream Areas of the Yellow River, Taian, China
| | - Chaohui Li
- College of Forestry, Shandong Agriculture University, Taian, China
| | - Qixiong Gao
- College of Forestry, Shandong Agriculture University, Taian, China
| | - Xunli Liu
- College of Forestry, Shandong Agriculture University, Taian, China
- State Forestry and Grassland Administration Key Laboratory of Silviculture in Downstream Areas of the Yellow River, Taian, China
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18
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Mamenko TP, Kots SY, Khomenko YO. The intensity of ethylene release by soybean plants under the influence of fungicides in the early stages of legume-rhizobial symbiosis. REGULATORY MECHANISMS IN BIOSYSTEMS 2020. [DOI: 10.15421/022014] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023] Open
Abstract
The effect of pre-sowing treatment of soybean seeds with fungicides on the intensity of ethylene release, the processes of nodulation and nitrogen fixation in different symbiotic systems in the early stages of ontogenesis were investigated. The objects of the study were selected symbiotic systems formed with the participation of soybean (Glycine max (L.) Merr.) Diamond variety, strains Bradyrhizobium japonicum 634b (active, virulent) and 604k (inactive, highly virulent) and fungicides Maxim XL 035 PS (fludioxonil, 25 g/L, metalaxyl, 10 g/L), and Standak Top (fipronil, 250 g/L, thiophanate methyl, 225 g/L, piraclostrobin, 25 g/L). Before sowing, the seeds of soybean were treated with solutions of fungicides, calculated on the basis of one rate of expenditure of the active substance of each preparation indicated by the producer per ton of seed. One part of the seeds treated with fungicides was inoculated with rhizobium culture for 1 h (the titre of bacteria was 107 cells/mL). To conduct the research we used microbiological, physiological, biochemical methods, gas chromatography and spectrophotometry. It is found that, regardless of the effectiveness of soybean rhizobial symbiosis, the highest level of ethylene release by plants was observed in the stages of primordial leaf and first true leaf. This is due to the initial processes of nodulation – the laying of nodule primordia and the active formation of nodules on the roots of soybeans. The results show that with the participation of fungicides in different symbiotic systems, there are characteristic changes in phytohormone synthesis in the primordial leaf stage, when the nodule primordia are planted on the root system of plants. In particular, in the ineffective symbiotic system, the intensity of phytohormone release decreases, while in the effective symbiotic system it increases. At the same time, a decrease in the number of nodules on soybean roots inoculated with an inactive highly virulent rhizobia 604k strain due to the action of fungicides and an increase in their number in variants with co-treatment of fungicides and active virulent strain 634b into the stage of the second true leaf were revealed. It was shown that despite a decrease in the mass of root nodules, there is an increase in their nitrogen-fixing activity in an effective symbiotic system with the participation of fungicides in the stage of the second true leaf. The highest intensity of ethylene release in both symbiotic systems was recorded in the stage of the first true leaf, which decreased in the stage of the second true leaf and was independent of the nature of the action of the active substances of fungicides. The obtained data prove that the action of fungicides changes the synthesis of ethylene by soybean plants, as well as the processes of nodulation and nitrogen fixation, which depend on the efficiency of the formed soybean-rhizobial systems and their ability to realize their symbiotic potential under appropriate growing conditions.
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19
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Fernández N, Cabrera JJ, Varadarajan AR, Lutz S, Ledermann R, Roschitzki B, Eberl L, Bedmar EJ, Fischer HM, Pessi G, Ahrens CH, Mesa S. An Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in Bradyrhizobium diazoefficiens. Front Microbiol 2019; 10:924. [PMID: 31134003 PMCID: PMC6515984 DOI: 10.3389/fmicb.2019.00924] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2019] [Accepted: 04/11/2019] [Indexed: 01/31/2023] Open
Abstract
The adaptation of rhizobia from the free-living state in soil to the endosymbiotic state comprises several physiological changes in order to cope with the extremely low oxygen availability (microoxia) within nodules. To uncover cellular functions required for bacterial adaptation to microoxia directly at the protein level, we applied a systems biology approach on the key rhizobial model and soybean endosymbiont Bradyrhizobium diazoefficiens USDA 110 (formerly B. japonicum USDA 110). As a first step, the complete genome of B. diazoefficiens 110spc4, the model strain used in most prior functional genomics studies, was sequenced revealing a deletion of a ~202 kb fragment harboring 223 genes and several additional differences, compared to strain USDA 110. Importantly, the deletion strain showed no significantly different phenotype during symbiosis with several host plants, reinforcing the value of previous OMICS studies. We next performed shotgun proteomics and detected 2,900 and 2,826 proteins in oxically and microoxically grown cells, respectively, largely expanding our knowledge about the inventory of rhizobial proteins expressed in microoxia. A set of 62 proteins was significantly induced under microoxic conditions, including the two nitrogenase subunits NifDK, the nitrogenase reductase NifH, and several subunits of the high-affinity terminal cbb3 oxidase (FixNOQP) required for bacterial respiration inside nodules. Integration with the previously defined microoxia-induced transcriptome uncovered a set of 639 genes or proteins uniquely expressed in microoxia. Finally, besides providing proteogenomic evidence for novelties, we also identified proteins with a regulation similar to that of FixK2: transcript levels of these protein-coding genes were significantly induced, while the corresponding protein abundance remained unchanged or was down-regulated. This suggested that, apart from fixK2, additional B. diazoefficiens genes might be under microoxia-specific post-transcriptional control. This hypothesis was indeed confirmed for several targets (HemA, HemB, and ClpA) by immunoblot analysis.
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Affiliation(s)
- Noemí Fernández
- Department of Soil Microbiology and Symbiotic Systems, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas, Granada, Spain
| | - Juan J Cabrera
- Department of Soil Microbiology and Symbiotic Systems, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas, Granada, Spain
| | - Adithi R Varadarajan
- Agroscope, Research Group Molecular Diagnostics, Genomics and Bioinformatics and Swiss Institute of Bioinformatics, Wädenswil, Switzerland.,Department of Health Sciences and Technology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland
| | - Stefanie Lutz
- Agroscope, Research Group Molecular Diagnostics, Genomics and Bioinformatics and Swiss Institute of Bioinformatics, Wädenswil, Switzerland
| | | | - Bernd Roschitzki
- Functional Genomics Center Zurich, ETH & UZH Zurich, Zurich, Switzerland
| | - Leo Eberl
- Department of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland
| | - Eulogio J Bedmar
- Department of Soil Microbiology and Symbiotic Systems, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas, Granada, Spain
| | | | - Gabriella Pessi
- Department of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland
| | - Christian H Ahrens
- Agroscope, Research Group Molecular Diagnostics, Genomics and Bioinformatics and Swiss Institute of Bioinformatics, Wädenswil, Switzerland
| | - Socorro Mesa
- Department of Soil Microbiology and Symbiotic Systems, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas, Granada, Spain
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20
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Gano‐Cohen KA, Wendlandt CE, Stokes PJ, Blanton MA, Quides KW, Zomorrodian A, Adinata ES, Sachs JL. Interspecific conflict and the evolution of ineffective rhizobia. Ecol Lett 2019; 22:914-924. [DOI: 10.1111/ele.13247] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2019] [Accepted: 02/07/2019] [Indexed: 12/25/2022]
Affiliation(s)
- Kelsey A. Gano‐Cohen
- Department of Microbiology and Plant Pathology University of California Riverside CA USA
- Department of Evolution Ecology & Organismal Biology University of California Riverside CA USA
| | - Camille E. Wendlandt
- Department of Evolution Ecology & Organismal Biology University of California Riverside CA USA
- Department of Botany and Plant Sciences University of California Riverside CA USA
| | - Peter J. Stokes
- Department of Evolution Ecology & Organismal Biology University of California Riverside CA USA
| | - Mia A. Blanton
- Department of Evolution Ecology & Organismal Biology University of California Riverside CA USA
| | - Kenjiro W. Quides
- Department of Evolution Ecology & Organismal Biology University of California Riverside CA USA
| | - Avissa Zomorrodian
- Department of Evolution Ecology & Organismal Biology University of California Riverside CA USA
| | - Eunice S. Adinata
- Department of Evolution Ecology & Organismal Biology University of California Riverside CA USA
| | - Joel L. Sachs
- Department of Microbiology and Plant Pathology University of California Riverside CA USA
- Department of Evolution Ecology & Organismal Biology University of California Riverside CA USA
- Department of Botany and Plant Sciences University of California Riverside CA USA
- Institute for Integrative Genome Biology University of California Riverside CA USA
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21
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Wang Z, Solanki MK, Yu ZX, Yang LT, An QL, Dong DF, Li YR. Draft Genome Analysis Offers Insights Into the Mechanism by Which Streptomyces chartreusis WZS021 Increases Drought Tolerance in Sugarcane. Front Microbiol 2019; 9:3262. [PMID: 30687260 PMCID: PMC6338045 DOI: 10.3389/fmicb.2018.03262] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Accepted: 12/14/2018] [Indexed: 11/30/2022] Open
Abstract
Drought directly affects sugarcane production. Plant growth-promoting bacteria have gained attention as growth promoters of plants under abiotic stresses. The present study focused on genome assessment of the plant-beneficial endophyte Streptomyces chartreusis WZS021 and its vital role in sugarcane plants under drought stress. Based on in vitro plant growth-promoting trait analyses, WZS021 had multiple abilities, including tolerance to drought and production of 1-aminocyclopropane-1-carboxylic deaminase, siderophores, and indole acetic acid. We confirmed root colonization of sugarcane transplants by WZS021 by a sterile sand assay and scanning electron microscopy. Plants inoculated with strain WZS021 had a positive influence on the root parameters such as length and biomass when compared to the control plants. A comparative study of the responses of two sugarcane varieties (ROC22 and B8) to different levels of drought stress in the presence or absence of WZS021 was conducted by assessing the plant chemistry. The expression of antioxidants in sugarcane leaves varied with water stress level. WZS021 inoculation improved the contents of chlorophyll, proline, and phytohormones, revealing some potential for the mechanisms by which this strain improves drought tolerance in sugarcane plants. We identified several genes that might be involved in the plant growth- and drought tolerance-promoting effects of this strain.
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Affiliation(s)
- Zhen Wang
- Agricultural College, State Key Laboratory of Subtropical Bioresources Conservation and Utilization, Guangxi University, Nanning, China
| | - Manoj Kumar Solanki
- Key Laboratory of Sugarcane Biotechnology and Genetic Improvement Guangxi, Ministry of Agriculture, Sugarcane Research Center, Chinese Academy of Agricultural Sciences, Nanning, China
- Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, China
- Department of Postharvest and Food Sciences, Agricultural Research Organization, Volcani Center, Rishon LeZion, Israel
| | - Zhuo-Xin Yu
- Agricultural College, State Key Laboratory of Subtropical Bioresources Conservation and Utilization, Guangxi University, Nanning, China
| | - Li-Tao Yang
- Agricultural College, State Key Laboratory of Subtropical Bioresources Conservation and Utilization, Guangxi University, Nanning, China
| | - Qian-Li An
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China
| | - Deng-Feng Dong
- Agricultural College, State Key Laboratory of Subtropical Bioresources Conservation and Utilization, Guangxi University, Nanning, China
| | - Yang-Rui Li
- Agricultural College, State Key Laboratory of Subtropical Bioresources Conservation and Utilization, Guangxi University, Nanning, China
- Key Laboratory of Sugarcane Biotechnology and Genetic Improvement Guangxi, Ministry of Agriculture, Sugarcane Research Center, Chinese Academy of Agricultural Sciences, Nanning, China
- Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, China
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Regulatory Role of Rhizobacteria to Induce Drought and Salt Stress Tolerance in Plants. SUSTAINABLE DEVELOPMENT AND BIODIVERSITY 2019. [DOI: 10.1007/978-3-030-30926-8_11] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Etesami H, Beattie GA. Mining Halophytes for Plant Growth-Promoting Halotolerant Bacteria to Enhance the Salinity Tolerance of Non-halophytic Crops. Front Microbiol 2018; 9:148. [PMID: 29472908 PMCID: PMC5809494 DOI: 10.3389/fmicb.2018.00148] [Citation(s) in RCA: 139] [Impact Index Per Article: 23.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2017] [Accepted: 01/23/2018] [Indexed: 11/20/2022] Open
Abstract
Salinity stress is one of the major abiotic stresses limiting crop production in arid and semi-arid regions. Interest is increasing in the application of PGPRs (plant growth promoting rhizobacteria) to ameliorate stresses such as salinity stress in crop production. The identification of salt-tolerant, or halophilic, PGPRs has the potential to promote saline soil-based agriculture. Halophytes are a useful reservoir of halotolerant bacteria with plant growth-promoting capabilities. Here, we review recent studies on the use of halophilic PGPRs to stimulate plant growth and increase the tolerance of non-halophytic crops to salinity. These studies illustrate that halophilic PGPRs from the rhizosphere of halophytic species can be effective bio-inoculants for promoting the production of non-halophytic species in saline soils. These studies support the viability of bioinoculation with halophilic PGPRs as a strategy for the sustainable enhancement of non-halophytic crop growth. The potential of this strategy is discussed within the context of ensuring sustainable food production for a world with an increasing population and continuing climate change. We also explore future research needs for using halotolerant PGPRs under salinity stress.
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Affiliation(s)
- Hassan Etesami
- Department of Soil Science, Faculty of Agricultural Engineering & Technology, University of Tehran, Tehran, Iran
| | - Gwyn A. Beattie
- Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, United States
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Govindasamy V, George P, Aher L, Ramesh SV, Thangasamy A, Anandan S, Raina SK, Kumar M, Rane J, Annapurna K, Minhas PS. Comparative conventional and phenomics approaches to assess symbiotic effectiveness of Bradyrhizobia strains in soybean (Glycine max L. Merrill) to drought. Sci Rep 2017; 7:6958. [PMID: 28761112 PMCID: PMC5537308 DOI: 10.1038/s41598-017-06441-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2017] [Accepted: 06/13/2017] [Indexed: 11/21/2022] Open
Abstract
Symbiotic effectiveness of rhizobitoxine (Rtx)-producing strains of Bradyrhizobium spp. in soybean (cultivar NRC-37/Ahilya-4) under limited soil moisture conditions was evaluated using phenomics tools such as infrared(IR) thermal and visible imaging. Red, green and blue (RGB) colour pixels were standardized to analyse a total of 1017 IR thermal and 692 visible images. Plants inoculated with the Rtx-producing strains B. elkanii USDA-61 and USDA-94 and successive inoculation by B. diazoefficiens USDA-110 resulted in cooler canopy temperatures and increased canopy greenness. The results of the image analysis of plants inoculated with Rtx-producing strains were correlated with effective nodulation, improved photosynthesis, plant nitrogen status and yield parameters. Principal component analysis (PCA) revealed the reliability of the phenomics approach over conventional destructive approaches in assessing the symbiotic effectiveness of Bradyrhizobium strains in soybean plants under watered (87.41-89.96%) and water-stressed (90.54-94.21%) conditions. Multivariate cluster analysis (MCA) revealed two distinct clusters denoting effective (Rtx) and ineffective (non-Rtx) Bradyrhizobium inoculation treatments in soybean. Furthermore, correlation analysis showed that this phenotyping approach is a dependable alternative for screening drought tolerant genotypes or drought resilience symbiosis. This is the first report on the application of non-invasive phenomics techniques, particularly RGB-based image analysis, in assessing plant-microbe symbiotic interactions to impart abiotic stress tolerance.
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Affiliation(s)
- Venkadasamy Govindasamy
- School of Drought Stress Management, ICAR-National Institute of Abiotic Stress Management, Baramati, Pune, 413115, Maharashtra, India.
- Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
| | - Priya George
- School of Drought Stress Management, ICAR-National Institute of Abiotic Stress Management, Baramati, Pune, 413115, Maharashtra, India
| | - Lalitkumar Aher
- School of Drought Stress Management, ICAR-National Institute of Abiotic Stress Management, Baramati, Pune, 413115, Maharashtra, India
| | - Shunmugiah V Ramesh
- ICAR-Indian Institute of Soybean Research, Indore, 452001, Madhya Pradesh, India
| | - Arunachalam Thangasamy
- ICAR-Directorate of Onion and Garlic Research, Rajgurunagar, Pune, 410505, Maharashtra, India
| | - Sivalingam Anandan
- ICAR-Directorate of Onion and Garlic Research, Rajgurunagar, Pune, 410505, Maharashtra, India
| | - Susheel Kumar Raina
- School of Drought Stress Management, ICAR-National Institute of Abiotic Stress Management, Baramati, Pune, 413115, Maharashtra, India
- ICAR-Central Institute of Temperate Horticulture, Srinagar, 190007, Jammu and Kashmir, India
| | - Mahesh Kumar
- School of Drought Stress Management, ICAR-National Institute of Abiotic Stress Management, Baramati, Pune, 413115, Maharashtra, India
| | - Jagadish Rane
- School of Drought Stress Management, ICAR-National Institute of Abiotic Stress Management, Baramati, Pune, 413115, Maharashtra, India
| | - Kannepalli Annapurna
- Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Paramjit Singh Minhas
- School of Drought Stress Management, ICAR-National Institute of Abiotic Stress Management, Baramati, Pune, 413115, Maharashtra, India
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Menendez E, Garcia-Fraile P. Plant probiotic bacteria: solutions to feed the world. AIMS Microbiol 2017; 3:502-524. [PMID: 31294173 PMCID: PMC6604988 DOI: 10.3934/microbiol.2017.3.502] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2017] [Accepted: 06/12/2017] [Indexed: 01/10/2023] Open
Abstract
The increasing human population expected in the next decades, the growing demand of livestock products-which production requires higher amounts of feed products fabrication, the collective concern about food quality in industrialized countries together with the need to protect the fertility of soils, in particular, and the environment, in general, constitute as a whole big challenge that worldwide agriculture has to face nowadays. Some soil bacteria harbor mechanisms to promote plant growth, which include phytostimulation, nutrient mobilization, biocontrol of plant pathogens and abiotic stresses protection. These bacteria have also been proved as promoters of vegetable food quality. Therefore, these microbes, also so-called Plant Probiotic Bacteria, applied as biofertilizers in crop production, constitute an environmental friendly manner to contribute to produce the food and feed needed to sustain world population. In this review, we summarize some of the best-known mechanisms of plant probiotic bacteria to improve plant growth and develop a more sustainable agriculture.
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Affiliation(s)
- Esther Menendez
- Instituto de Ciências Agrárias e Ambientais Mediterrânicas (ICAAM), Universidade de Évora, Évora, Portugal
| | - Paula Garcia-Fraile
- Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology, Academy of Sciences of the Czech Republic, Prague, Czech Republic
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Hernández AG, de Moura GD, Binati RL, Nascimento FXI, Londoño DM, Mamede ACP, da Silva EP, de Armas RD, Giachini AJ, Rossi MJ, Soares CRFS. Selection and characterization of coal mine autochthonous rhizobia for the inoculation of herbaceous legumes. Arch Microbiol 2017; 199:991-1001. [DOI: 10.1007/s00203-017-1373-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2017] [Revised: 03/20/2017] [Accepted: 03/27/2017] [Indexed: 12/19/2022]
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Sun Y, Guo H, Ge F. Plant-Aphid Interactions Under Elevated CO2: Some Cues from Aphid Feeding Behavior. FRONTIERS IN PLANT SCIENCE 2016; 7:502. [PMID: 27148325 PMCID: PMC4829579 DOI: 10.3389/fpls.2016.00502] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2015] [Accepted: 03/29/2016] [Indexed: 05/18/2023]
Abstract
Although the increasing concentration of atmospheric carbon dioxide (CO2) accelerates the accumulation of carbohydrates and increases the biomass and yield of C3 crop plants, it also reduces their nitrogen concentration. The consequent changes in primary and secondary metabolites affect the palatability of host plants and the feeding of herbivorous insects. Aphids are phloem feeders and are considered the only feeding guild that positively responds to elevated CO2. In this review, we consider how elevated CO2 modifies host defenses, nutrients, and water-use efficiency by altering concentrations of the phytohormones jasmonic acid, salicylic acid, ethylene, and abscisic acid. We will describe how these elevated CO2-induced changes in defenses, nutrients, and water statusfacilitate specific stages of aphid feeding, including penetration, phloem-feeding, and xylem absorption. We conclude that a better understanding of the effects of elevated CO2 on aphids and on aphid damage to crop plants will require research on the molecular aspects of the interaction between plant and aphid but also research on aphid interactions with their intra- and inter-specific competitors and with their natural enemies.
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Affiliation(s)
| | | | - Feng Ge
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of SciencesBeijing, China
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28
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Palmer AG, Senechal AC, Mukherjee A, Ané JM, Blackwell HE. Plant responses to bacterial N-acyl L-homoserine lactones are dependent on enzymatic degradation to L-homoserine. ACS Chem Biol 2014; 9:1834-45. [PMID: 24918118 PMCID: PMC4136694 DOI: 10.1021/cb500191a] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
![]()
Many
bacteria use quorum sensing (QS) to regulate phenotypes that
ultimately benefit the bacterial population at high cell densities.
These QS-dependent phenotypes are diverse and can have significant
impacts on the bacterial host, including virulence factor production,
motility, biofilm formation, bioluminescence, and root nodulation.
As bacteria and their eukaryotic hosts have coevolved over millions
of years, it is not surprising that certain hosts appear to be able
to sense QS signals, potentially allowing them to alter QS outcomes.
Recent experiments have established that eukaryotes have marked responses
to the N-acyl l-homoserine lactone (AHL)
signals used by Gram-negative bacteria for QS, and the responses of
plants to AHLs have received considerable scrutiny to date. However,
the molecular mechanisms by which plants, and eukaryotes in general,
sense bacterial AHLs remain unclear. Herein, we report a systematic
analysis of the responses of the model plants Arabidopsis
thaliana and Medicago truncatula to a series
of native AHLs and byproducts thereof. Our results establish that
AHLs can significantly alter seedling growth in an acyl-chain length
dependent manner. Based upon A. thaliana knockout
studies and in vitro biochemical assays, we conclude
that the observed growth effects are dependent upon AHL amidolysis
by a plant-derived fatty acid amide hydrolase (FAAH) to yield l-homoserine. The accumulation of l-homoserine appears
to encourage plant growth at low concentrations by stimulating transpiration,
while higher concentrations inhibit growth by stimulating ethylene
production. These results offer new insights into the mechanisms by
which plant hosts can respond to QS signals and the potential role
of QS in interkingdom associations.
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Affiliation(s)
- Andrew G. Palmer
- Department
of Chemistry, 1101 University
Avenue, University of Wisconsin−Madison, Madison Wisconsin 53706, United States
| | - Amanda C. Senechal
- Department
of Chemistry, 1101 University
Avenue, University of Wisconsin−Madison, Madison Wisconsin 53706, United States
| | - Arijit Mukherjee
- Department
of Agronomy, 1575 Linden
Drive, University of Wisconsin−Madison, Madison Wisconsin 53706, United States
| | - Jean-Michel Ané
- Department
of Agronomy, 1575 Linden
Drive, University of Wisconsin−Madison, Madison Wisconsin 53706, United States
| | - Helen E. Blackwell
- Department
of Chemistry, 1101 University
Avenue, University of Wisconsin−Madison, Madison Wisconsin 53706, United States
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Guo H, Sun Y, Li Y, Liu X, Zhang W, Ge F. Elevated CO2 decreases the response of the ethylene signaling pathway in Medicago truncatula and increases the abundance of the pea aphid. THE NEW PHYTOLOGIST 2014; 201:279-291. [PMID: 24015892 DOI: 10.1111/nph.12484] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2013] [Accepted: 08/06/2013] [Indexed: 05/08/2023]
Abstract
The performance of herbivorous insects is greatly affected by plant nutritional quality and resistance, which are likely to be altered by rising concentrations of atmospheric CO2 . We previously reported that elevated CO2 enhanced biological nitrogen (N) fixation of Medicago truncatula, which could result in an increased supply of amino acids to the pea aphid (Acyrthosiphon pisum). The current study examined the N nutritional quality and aphid resistance of sickle, an ethylene-insensitive mutant of M. truncatula with supernodulation, and its wild-type control A17 under elevated CO2 in open-top field chambers. Regardless of CO2 concentration, growth and amino acid content were greater and aphid resistance was lower in sickle than in A17. Elevated CO2 up-regulated N assimilation and transamination-related enzymes activities and increased phloem amino acids in both genotypes. Furthermore, elevated CO2 down-regulated expression of 1-amino-cyclopropane-carboxylic acid (ACC), sickle gene (SKL) and ethylene response transcription factors (ERF) genes in the ethylene signaling pathway of A17 when infested by aphids and decreased resistance against aphids in terms of lower activities of superoxide dismutase (SOD), peroxidase (POD), and polyphenol oxidase (PPO). Our results suggest that elevated CO2 suppresses the ethylene signaling pathway in M. truncatula, which results in an increase in plant nutritional quality for aphids and a decrease in plant resistance against aphids.
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Affiliation(s)
- Huijuan Guo
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China
- Graduate School, Chinese Academy of Sciences, Beijing, 100039, China
| | - Yucheng Sun
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Yuefei Li
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Xianghui Liu
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Wenhao Zhang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- Research Network of Global Change Biology, Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing, China
| | - Feng Ge
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China
- Research Network of Global Change Biology, Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing, China
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Brígido C, Nascimento FX, Duan J, Glick BR, Oliveira S. Expression of an exogenous 1-aminocyclopropane-1-carboxylate deaminase gene inMesorhizobiumspp. reduces the negative effects of salt stress in chickpea. FEMS Microbiol Lett 2013; 349:46-53. [DOI: 10.1111/1574-6968.12294] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2013] [Revised: 09/26/2013] [Accepted: 09/27/2013] [Indexed: 11/28/2022] Open
Affiliation(s)
- Clarisse Brígido
- Laboratório de Microbiologia do Solo; ICAAM; Instituto de Ciências Agrárias e Ambientais Mediterrânicas; Universidade de Évora; Núcleo da Mitra; Évora Portugal
| | - Francisco X. Nascimento
- Laboratório de Microbiologia do Solo; ICAAM; Instituto de Ciências Agrárias e Ambientais Mediterrânicas; Universidade de Évora; Núcleo da Mitra; Évora Portugal
| | - Jin Duan
- Department of Biology; University of Waterloo; Waterloo ON Canada
| | - Bernard R. Glick
- Department of Biology; University of Waterloo; Waterloo ON Canada
| | - Solange Oliveira
- Laboratório de Microbiologia do Solo; ICAAM; Instituto de Ciências Agrárias e Ambientais Mediterrânicas; Universidade de Évora; Núcleo da Mitra; Évora Portugal
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Mohd-Radzman NA, Djordjevic MA, Imin N. Nitrogen modulation of legume root architecture signaling pathways involves phytohormones and small regulatory molecules. FRONTIERS IN PLANT SCIENCE 2013; 4:385. [PMID: 24098303 PMCID: PMC3787543 DOI: 10.3389/fpls.2013.00385] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2013] [Accepted: 09/11/2013] [Indexed: 05/20/2023]
Abstract
Nitrogen, particularly nitrate is an important yield determinant for crops. However, current agricultural practice with excessive fertilizer usage has detrimental effects on the environment. Therefore, legumes have been suggested as a sustainable alternative for replenishing soil nitrogen. Legumes can uniquely form nitrogen-fixing nodules through symbiotic interaction with specialized soil bacteria. Legumes possess a highly plastic root system which modulates its architecture according to the nitrogen availability in the soil. Understanding how legumes regulate root development in response to nitrogen availability is an important step to improving root architecture. The nitrogen-mediated root development pathway starts with sensing soil nitrogen level followed by subsequent signal transduction pathways involving phytohormones, microRNAs and regulatory peptides that collectively modulate the growth and shape of the root system. This review focuses on the current understanding of nitrogen-mediated legume root architecture including local and systemic regulations by different N-sources and the modulations by phytohormones and small regulatory molecules.
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Affiliation(s)
| | | | - Nijat Imin
- *Correspondence: Nijat Imin, Division of Plant Sciences, Research School of Biology, College of Medicine, Biology and Environment, The Australian National University, Linnaeus Building 134, Linnaeus Way, Canberra, ACT 0200, Australia e-mail:
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Palma F, López-Gómez M, Tejera NA, Lluch C. Salicylic acid improves the salinity tolerance of Medicago sativa in symbiosis with Sinorhizobium meliloti by preventing nitrogen fixation inhibition. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2013; 208:75-82. [PMID: 23683932 DOI: 10.1016/j.plantsci.2013.03.015] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2012] [Revised: 03/26/2013] [Accepted: 03/28/2013] [Indexed: 05/23/2023]
Abstract
In this work we have investigated the contribution of pretreatment with 0.1 and 0.5mM salicylic acid (SA) to the protection against salt stress in root nodules of Medicago sativa in symbiosis with Sinorhizobium meliloti. SA alleviated the inhibition induced by salinity in the plant growth and photosynthetic capacity of M. sativa-S. meliloti symbiosis. In addition, SA prevented the inhibition of the nitrogen fixation capacity under salt stress since nodule biomass was not affected by salinity in SA pretreated plants. Antioxidant enzymes peroxidase (POX), superoxide dismutase (SOD), ascorbate peroxidase (APX), dehidroascorbate reductase (DHAR) and glutathione reductase (GR), key in the main pathway that scavenges H2O2 in plants, were induced by SA pretreatments which suggest that SA may participate in the redox balance in root nodules under salt stress. Catalase activity (CAT) was inhibited around 40% by SA which could be behind the increase of H2O2 detected in nodules of plants pretreated with SA. The accumulation of polyamines (PAs) synthesized in response to salinity was prevented by SA which together with the induction of 1-aminocyclopropane-l-carboxylic acid (ACC) content suggest the prevalence of the ethylene signaling pathway induced by SA in detriment of the synthesis of PAs. In conclusion, SA alleviated the negative effect of salt stress in the M. sativa-S. meliloti symbiosis through the increased level of nodule biomass and the induction of the nodular antioxidant metabolism under salt stress. The H2O2 accumulation and the PAs inhibition induced by SA in nodules of M. sativa suggest that SA activates a hypersensitive response dependent on ethylene.
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Affiliation(s)
- F Palma
- Departamento de Fisiología Vegetal, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071 Granada, Spain
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Murset V, Hennecke H, Pessi G. Disparate role of rhizobial ACC deaminase in root-nodule symbioses. Symbiosis 2012. [DOI: 10.1007/s13199-012-0177-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Abstract
Although 'cheaters' potentially destabilize the legume-rhizobium mutualism, we lack a comprehensive review of host-symbiont fitness correlations. Studies measuring rhizobium relative or absolute fitness and host benefit are surveyed. Mutant studies are tallied for evidence of pleiotropy; studies of natural strains are analyzed with meta-analysis. Of 80 rhizobium mutations, 19 decrease both partners' fitness, four increase both, two increase host fitness but decrease symbiont fitness and none increase symbiont fitness at the host's expense. The pooled correlation between rhizobium nodulation competitiveness and plant aboveground biomass is 0.65 across five experiments that compete natural strains against a reference, whereas, across 14 experiments that compete rhizobia against soil populations or each other, the pooled correlation is 0.24. Pooled correlations between aboveground biomass and nodule number and nodule biomass are 0.76 and 0.83. Positive correlations between legume and rhizobium fitness imply that most ineffective rhizobia are 'defective' rather than 'defectors'; this extends to natural variants, with only one significant fitness conflict. Most studies involve non-coevolved associations, indicating that fitness alignment is the default state. Rhizobium mutations that increase both host and symbiont fitness suggest that some plants maladaptively restrict symbiosis with novel strains.
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Affiliation(s)
- Maren L Friesen
- Center for Population Biology, University of California, Davis, One Shields Ave., Davis, CA 95616, USA
- Present address: Section of Molecular and Computational Biology, Department of Biology, University of Southern California, 1050 Childs Way, RRI 201-B Los Angeles, CA 90089, USA
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Dodd IC, Pérez-Alfocea F. Microbial amelioration of crop salinity stress. JOURNAL OF EXPERIMENTAL BOTANY 2012; 63:3415-28. [PMID: 22403432 DOI: 10.1093/jxb/ers033] [Citation(s) in RCA: 159] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
The use of soil and irrigation water with a high content of soluble salts is a major limiting factor for crop productivity in the semi-arid areas of the world. While important physiological insights about the mechanisms of salt tolerance in plants have been gained, the transfer of such knowledge into crop improvement has been limited. The identification and exploitation of soil microorganisms (especially rhizosphere bacteria and mycorrhizal fungi) that interact with plants by alleviating stress opens new alternatives for a pyramiding strategy against salinity, as well as new approaches to discover new mechanisms involved in stress tolerance. Although these mechanisms are not always well understood, beneficial physiological effects include improved nutrient and water uptake, growth promotion, and alteration of plant hormonal status and metabolism. This review aims to evaluate the beneficial effects of soil biota on the plant response to saline stress, with special reference to phytohormonal signalling mechanisms that interact with key physiological processes to improve plant tolerance to the osmotic and toxic components of salinity. Improved plant nutrition is a quite general beneficial effect and may contribute to the maintenance of homeostasis of toxic ions under saline stress. Furthermore, alteration of crop hormonal status to decrease evolution of the growth-retarding and senescence-inducing hormone ethylene (or its precursor 1-aminocyclopropane-1-carboxylic acid), or to maintain source-sink relations, photosynthesis, and biomass production and allocation (by altering indole-3-acetic acid and cytokinin biosynthesis) seem to be promising target processes for soil biota-improved crop salt tolerance.
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Affiliation(s)
- Ian C Dodd
- Lancaster Environment Centre, University of Lancaster, Lancaster, UK.
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Glick BR. Plant growth-promoting bacteria: mechanisms and applications. SCIENTIFICA 2012; 2012:963401. [PMID: 24278762 PMCID: PMC3820493 DOI: 10.6064/2012/963401] [Citation(s) in RCA: 869] [Impact Index Per Article: 72.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2012] [Accepted: 09/13/2012] [Indexed: 05/18/2023]
Abstract
The worldwide increases in both environmental damage and human population pressure have the unfortunate consequence that global food production may soon become insufficient to feed all of the world's people. It is therefore essential that agricultural productivity be significantly increased within the next few decades. To this end, agricultural practice is moving toward a more sustainable and environmentally friendly approach. This includes both the increasing use of transgenic plants and plant growth-promoting bacteria as a part of mainstream agricultural practice. Here, a number of the mechanisms utilized by plant growth-promoting bacteria are discussed and considered. It is envisioned that in the not too distant future, plant growth-promoting bacteria (PGPB) will begin to replace the use of chemicals in agriculture, horticulture, silviculture, and environmental cleanup strategies. While there may not be one simple strategy that can effectively promote the growth of all plants under all conditions, some of the strategies that are discussed already show great promise.
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Affiliation(s)
- Bernard R. Glick
- Department of Biology, University of Waterloo, 200 University Avenue South, Waterloo, ON, Canada N2L 3G1
- *Bernard R. Glick:
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Galardini M, Mengoni A, Brilli M, Pini F, Fioravanti A, Lucas S, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Land M, Hauser L, Woyke T, Mikhailova N, Ivanova N, Daligault H, Bruce D, Detter C, Tapia R, Han C, Teshima H, Mocali S, Bazzicalupo M, Biondi EG. Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti. BMC Genomics 2011; 12:235. [PMID: 21569405 PMCID: PMC3164228 DOI: 10.1186/1471-2164-12-235] [Citation(s) in RCA: 83] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2011] [Accepted: 05/12/2011] [Indexed: 11/26/2022] Open
Abstract
Background Sinorhizobium meliloti is a model system for the studies of symbiotic nitrogen fixation. An extensive polymorphism at the genetic and phenotypic level is present in natural populations of this species, especially in relation with symbiotic promotion of plant growth. AK83 and BL225C are two nodule-isolated strains with diverse symbiotic phenotypes; BL225C is more efficient in promoting growth of the Medicago sativa plants than strain AK83. In order to investigate the genetic determinants of the phenotypic diversification of S. meliloti strains AK83 and BL225C, we sequenced the complete genomes for these two strains. Results With sizes of 7.14 Mbp and 6.97 Mbp, respectively, the genomes of AK83 and BL225C are larger than the laboratory strain Rm1021. The core genome of Rm1021, AK83, BL225C strains included 5124 orthologous groups, while the accessory genome was composed by 2700 orthologous groups. While Rm1021 and BL225C have only three replicons (Chromosome, pSymA and pSymB), AK83 has also two plasmids, 260 and 70 Kbp long. We found 65 interesting orthologous groups of genes that were present only in the accessory genome, consequently responsible for phenotypic diversity and putatively involved in plant-bacterium interaction. Notably, the symbiosis inefficient AK83 lacked several genes required for microaerophilic growth inside nodules, while several genes for accessory functions related to competition, plant invasion and bacteroid tropism were identified only in AK83 and BL225C strains. Presence and extent of polymorphism in regulons of transcription factors involved in symbiotic interaction were also analyzed. Our results indicate that regulons are flexible, with a large number of accessory genes, suggesting that regulons polymorphism could also be a key determinant in the variability of symbiotic performances among the analyzed strains. Conclusions In conclusions, the extended comparative genomics approach revealed a variable subset of genes and regulons that may contribute to the symbiotic diversity.
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Affiliation(s)
- Marco Galardini
- Department of Evolutionary Biology, University of Firenze, via Romana 17, I-50125 Firenze, Italy
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Bonfante P, Anca IA. Plants, Mycorrhizal Fungi, and Bacteria: A Network of Interactions. Annu Rev Microbiol 2009; 63:363-83. [DOI: 10.1146/annurev.micro.091208.073504] [Citation(s) in RCA: 532] [Impact Index Per Article: 35.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Paola Bonfante
- Dipartimento di Biologia Vegetale dell' Università di Torino and Istituto di Protezione delle Piante del CNR, Sezione di Torino, 10125 Torino, Italy;
| | - Iulia-Andra Anca
- Dipartimento di Biologia Vegetale dell' Università di Torino and Istituto di Protezione delle Piante del CNR, Sezione di Torino, 10125 Torino, Italy;
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A mechanistic molecular test of the plant-sanction hypothesis in legume–rhizobia mutualism. ACTA OECOLOGICA-INTERNATIONAL JOURNAL OF ECOLOGY 2009. [DOI: 10.1016/j.actao.2009.06.005] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Lohar D, Stiller J, Kam J, Stacey G, Gresshoff PM. Ethylene insensitivity conferred by a mutated Arabidopsis ethylene receptor gene alters nodulation in transgenic Lotus japonicus. ANNALS OF BOTANY 2009; 104:277-85. [PMID: 19505874 PMCID: PMC2710892 DOI: 10.1093/aob/mcp132] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2009] [Revised: 03/10/2009] [Accepted: 04/17/2009] [Indexed: 05/18/2023]
Abstract
BACKGROUND AND AIMS Transgenics are used to demonstrate a causal relationship between ethylene insensitivity of a seedling legume plant, the level of ethylene receptor gene expression, lateral root growth and Mesorhizobium loti-induced nodule initiation. METHODS Lotus japonicus plants expressing the dominant etr1-1 allele of the Arabidopsis thaliana gene encoding a well-characterized mutated ethylene receptor were created by stable Agrobacterium tumefaciens transformation. Single insertion, homozygous lines were characterized for symbiotic properties. KEY RESULTS Transgenic plants were ethylene insensitive as judged by the lack of the 'Triple Response', and their continued ability to grow and nodulate in the presence of inhibitory concentrations of ACC (1-aminocyclopropane-1-carboxylic acid; an ethylene precursor). Transgenic plants with high insensitivity to ACC had significantly fewer lateral roots and exhibited increased nodulation while showing no altered nitrate sensitivity or lack of systemic autoregulation. Whereas ACC-insensitive shoot growth and nodulation were observed in transformants, root growth was inhibited similarly to the wild type. Increased nodulation was caused by increased infection and a seven-fold increase in nodules developing between xylem poles. Bacteroid numbers per symbiosome increased about 1.7-fold in ethylene-insensitive plants. CONCLUSIONS The study further demonstrates multiple roles for ethylene in nodule initiation by influencing root cell infections and radial positioning, independent of autoregulation and nitrate inhibition of nodulation.
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Affiliation(s)
- Dasharath Lohar
- National Center for Soybean Biotechnology, Department of Plant Microbiology and Pathology, University of Missouri, Columbia, MO 65211, USA
| | - Jiri Stiller
- ARC Centre of Excellence for Integrative Legume Research, The University of Queensland, St Lucia, Brisbane, QLD 4072Australia
| | - Jason Kam
- ARC Centre of Excellence for Integrative Legume Research, The University of Queensland, St Lucia, Brisbane, QLD 4072Australia
| | - Gary Stacey
- National Center for Soybean Biotechnology, Department of Plant Microbiology and Pathology, University of Missouri, Columbia, MO 65211, USA
| | - Peter M. Gresshoff
- ARC Centre of Excellence for Integrative Legume Research, The University of Queensland, St Lucia, Brisbane, QLD 4072Australia
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Marco DE, Carbajal JP, Cannas S, Pérez-Arnedo R, Hidalgo-Perea Á, Olivares J, Ruiz-Sainz JE, Sanjuán J. An experimental and modelling exploration of the host-sanction hypothesis in legume–rhizobia mutualism. J Theor Biol 2009; 259:423-33. [DOI: 10.1016/j.jtbi.2009.03.033] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2008] [Revised: 03/20/2009] [Accepted: 03/25/2009] [Indexed: 10/20/2022]
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Kiers ET, Denison RF. Sanctions, Cooperation, and the Stability of Plant-Rhizosphere Mutualisms. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2008. [DOI: 10.1146/annurev.ecolsys.39.110707.173423] [Citation(s) in RCA: 234] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- E. Toby Kiers
- Faculteit der Aard – en Levenswetenschappen, De Boelelaan 1085, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, The Netherlands;
| | - R. Ford Denison
- Department of Ecology, Evolution, & Behavior, University of Minnesota, St. Paul, Minnesota 55108;
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Penmetsa RV, Uribe P, Anderson J, Lichtenzveig J, Gish JC, Nam YW, Engstrom E, Xu K, Sckisel G, Pereira M, Baek JM, Lopez-Meyer M, Long SR, Harrison MJ, Singh KB, Kiss GB, Cook DR. The Medicago truncatula ortholog of Arabidopsis EIN2, sickle, is a negative regulator of symbiotic and pathogenic microbial associations. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2008; 55:580-95. [PMID: 18435823 DOI: 10.1111/j.1365-313x.2008.03531.x] [Citation(s) in RCA: 159] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
The plant hormone ethylene negatively regulates bacterial infection and nodule formation in legumes in response to symbiotic rhizobia, but the molecular mechanism(s) of ethylene action in symbiosis remain obscure. We have identified and characterized multiple mutant alleles of the MtSkl1 gene, which controls both ethylene sensitivity and nodule numbers. We show that this locus encodes the Medicago truncatula ortholog of the Arabidopsis ethylene signaling protein EIN2. In addition to the well-characterized role of MtSkl1 in rhizobial symbiosis, we show that MtSkl1 is involved in regulating early phases of the symbiotic interaction with mycorrhizal fungi, and in mediating root responses to cytokinin. MtSkl1 also functions in the defense against Rhizoctonia solani and Phytophthora medicaginis, with the latter interaction likely to involve positive feedback amplification of ethylene biosynthesis. Overexpression of the C-terminal domain of MtEIN2 is sufficient to block nodulation responses, consistent with previous reports in Arabidopsis on the activation of ethylene signaling. This same C-terminal region is uniquely conserved throughout the EIN2 homologs of angiosperms, which is consistent with its role as a higher plant-specific innovation essential to EIN2 function.
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Affiliation(s)
- R Varma Penmetsa
- Department of Plant Pathology, University of California-Davis, Davis, CA 95616, USA
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Brechenmacher L, Kim MY, Benitez M, Li M, Joshi T, Calla B, Lee MP, Libault M, Vodkin LO, Xu D, Lee SH, Clough SJ, Stacey G. Transcription profiling of soybean nodulation by Bradyrhizobium japonicum. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2008; 21:631-45. [PMID: 18393623 DOI: 10.1094/mpmi-21-5-0631] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Legumes interact with nodulating bacteria that convert atmospheric nitrogen into ammonia for plant use. This nitrogen fixation takes place within root nodules that form after infection of root hairs by compatible rhizobia. Using cDNA microarrays, we monitored gene expression in soybean (Glycine max) inoculated with the nodulating bacterium Bradyrhizobium japonicum 4, 8, and 16 days after inoculation, timepoints that coincide with nodule development and the onset of nitrogen fixation. This experiment identified several thousand genes that were differentially expressed in response to B. japonicum inoculation. Expression of 27 genes was analyzed by quantitative reverse transcriptase-polymerase chain reaction, and their expression patterns mimicked the microarray results, confirming integrity of analyses. The microarray results suggest that B. japonicum reduces plant defense responses during nodule development. In addition, the data revealed a high level of regulatory complexity (transcriptional, post-transcriptional, translational, post-translational) that is likely essential for development of the symbiosis and adjustment to an altered nutritional status.
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Affiliation(s)
- Laurent Brechenmacher
- National Center for Soybean Biotechnology, Divisions of Plant Sciences and Biochemistry, University of Missouri, Columbia, MO 65211, USA
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Echbab H, Arahou M, Ducousso M, Nourissier-Mountou S, Duponnois R, Lahlou H, Prin Y. Successful nodulation of Casuarina by Frankia in axenic conditions. J Appl Microbiol 2007; 103:1728-37. [PMID: 17953583 DOI: 10.1111/j.1365-2672.2007.03425.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
AIMS In order to depict the fine interactions that lead to nodulation, absolute microbiological control of the symbiotic partners is required, i.e. the ability to obtain in vitro axenic nodulation, a condition that has never been fulfilled with the Casuarina-Frankia symbiosis. The effects of culture conditions on plant growth and nodule formation by Casuarina cunninghamiana were investigated. METHODS AND RESULTS Axenic (capped tubes with different substrates), and nonaxenic cultures (Gibson tubes, pot cultures) were tested. In axenic conditions, C. cunninghamiana, inoculated with Frankia, had poor growth and did not form nodules at 6 weeks. Plants cultivated in Gibson tubes reached the four axillary shoots stage within 6 weeks and formed nodules 4 weeks after inoculation. Sand-pot cultures allowed us to relate the plant development stage at inoculation with nodulation. CONCLUSIONS The sterile replacement of the cap by a plastic bag increased plant growth and enabled nodule formation 6 weeks after inoculation. The new system of plant culture allows the axenic nodule formation 6 weeks after inoculation. Nodulation behaviour is related to plant development and confinement. SIGNIFICANCE AND IMPACT OF THE STUDY This axenic plant nodulation system is of major interest in analysing the roles of Frankia genes in nodulation pathways.
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Affiliation(s)
- H Echbab
- Département de Biologie, Faculté des Sciences, Université Mohammed V-Agdal, Rabat, Morocco
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Maimaiti J, Zhang Y, Yang J, Cen YP, Layzell DB, Peoples M, Dong Z. Isolation and characterization of hydrogen-oxidizing bacteria induced following exposure of soil to hydrogen gas and their impact on plant growth. Environ Microbiol 2007; 9:435-44. [PMID: 17222141 DOI: 10.1111/j.1462-2920.2006.01155.x] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In many legumes, the nitrogen fixing root nodules produce H2 gas that diffuses into soil. It has been demonstrated that such exposure of soil to H2 can promote plant growth. To assess whether this may be due to H2-oxidizing microorganisms, bacteria were isolated from soil treated with H2 under laboratory conditions and from soils collected adjacent to H2 producing soybean nodules. Nineteen isolates of H2-oxidizing bacteria were obtained and all exhibited a half-saturation coefficient (Ks) for H2 of about 1 ml l(-1). The isolates were identified as Variovorax paradoxus, Flavobacterium johnsoniae and Burkholderia spp. using conventional microbiological tests and 16S rRNA gene sequence analysis. Seventeen of the isolates enhanced (57-254%) root elongation of spring wheat seedlings. Using an Arabidopsis thaliana bioassay, plant biomass was increased by 11-27% when inoculated by one of four isolates of V. paradoxus or one isolate of Burkholderia that were selected for evaluation. The isolates of V. paradoxus found in both H2-treated soil and in soil adjacent to soybean nodules had the greatest impact on plant growth. The results are consistent with the hypothesis that H2-oxidizing bacteria in soils have plant growth promoting properties.
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Affiliation(s)
- Jiamila Maimaiti
- Department of Biology, St. Mary's University, Halifax, NS, Canada, B3H 3C3
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Sugawara M, Haramaki R, Nonaka S, Ezura H, Okazaki S, Eda S, Mitsui H, Minamisawa K. Rhizobitoxine production in Agrobacterium tumefaciens C58 by Bradyrhizobium elkanii rtxACDEFG genes. FEMS Microbiol Lett 2007; 269:29-35. [PMID: 17227467 DOI: 10.1111/j.1574-6968.2006.00590.x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Abstract
We examined the genetic basis and transfer for production of rhizobitoxine, an inhibitor of ethylene biosynthesis in plants, directed by the rtx genes of Bradyrhizobium elkanii. Comparison with genome sequences of Bradyrhizobium japonicum and Xanthomonas oryzae suggests that the rtx genes extend from the previously identified rtxAC genes through four additional genes rtxDEFG. Reverse transcription-PCR analysis showed that the rtxACDEFG genes are expressed as an operon. Mutational analysis indicated that rtxDEG mutants reduced rhizobitoxine biosynthesis, while the rtxA gene is essential for its synthesis. Introduction of the rtxACDEFG into Agrobacterium tumefaciens resulted in strong expression of rtxACDEFG and production of RtxA protein, but no rhizobitoxine was detectable. Addition of O-acetylhomoserine, a precursor of rhizobitoxine, to the Agrobacterium derivative, however, fostered production of rhizobitoxine in culture. The diluted culture supernatant inhibited the activities of beta-cystathionase and 1-aminocyclopropane-1-carboxylate synthase, indicating that A. tumefaciens carrying rtxACDEFG genes excreted biologically active rhizobitoxine.
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Affiliation(s)
- Masayuki Sugawara
- Graduate School of Life Sciences, Tohoku University, Katahira, Aoba-ku, Sendai, Japan
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Soto MJ, Sanjuán J, Olivares J. Rhizobia and plant-pathogenic bacteria: common infection weapons. MICROBIOLOGY-SGM 2007; 152:3167-3174. [PMID: 17074888 DOI: 10.1099/mic.0.29112-0] [Citation(s) in RCA: 106] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Plant-interacting micro-organisms can establish either mutualistic or pathogenic associations. Although the outcome is completely different, common molecular mechanisms that mediate communication between the interacting partners seem to be involved. Specifically, nitrogen-fixing bacterial symbionts of legume plants, collectively termed rhizobia, and phytopathogenic bacteria have adopted similar strategies and genetic traits to colonize, invade and establish a chronic infection in the plant host. Quorum-sensing signals and identical two-component regulatory systems are used by these bacteria to coordinate, in a cell density-dependent manner or in response to changing environmental conditions, the expression of important factors for host colonization and infection. The success of invasion and survival within the host also requires that rhizobia and pathogens suppress and/or overcome plant defence responses triggered after microbial recognition, a process in which surface polysaccharides, antioxidant systems, ethylene biosynthesis inhibitors and virulence genes are involved.
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Affiliation(s)
- María J Soto
- Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín, CSIC, Profesor Albareda 1, 18008 Granada, Spain
| | - Juan Sanjuán
- Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín, CSIC, Profesor Albareda 1, 18008 Granada, Spain
| | - José Olivares
- Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín, CSIC, Profesor Albareda 1, 18008 Granada, Spain
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Berkowitz DB, Charette BD, Karukurichi KR, McFadden JM. α-Vinylic Amino Acids: Occurrence, Asymmetric Synthesis and Biochemical Mechanisms. TETRAHEDRON, ASYMMETRY 2006; 17:869-882. [PMID: 29977107 PMCID: PMC6029878 DOI: 10.1016/j.tetasy.2006.02.026] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Abstract
This report presents an overview of the family of naturally occurring 'vinylic' amino acids, namely those that feature a C-C double bond directly attached to the α-carbon, along the side chain. Strategies that have been brought to bear on the stereocontrolled synthesis of these olefinic amino acids are surveyed. The mechanistic diversity by which such 'vinylic triggers' can be actuated in a PLP (pyridoxal phosphate) enzyme active site is then highlighted by discussions of vinylglycine (VG), its substituted congeners, particularly AVG [4E-(2'-aminoethoxy)vinylglycine], and a naturally occurring VG-progenitor, SMM (S-methylmethionine).
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Affiliation(s)
- David B Berkowitz
- Department of Chemistry, University of Nebraska, Lincoln, NE 68588-0304
| | | | | | - Jill M McFadden
- Department of Chemistry, University of Nebraska, Lincoln, NE 68588-0304
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