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For: Barakat A, DiLoreto DS, Zhang Y, Smith C, Baier K, Powell WA, Wheeler N, Sederoff R, Carlson JE. Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection. BMC Plant Biol 2009;9:51. [PMID: 19426529 PMCID: PMC2688492 DOI: 10.1186/1471-2229-9-51] [Citation(s) in RCA: 96] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2008] [Accepted: 05/09/2009] [Indexed: 05/07/2023]
Number Cited by Other Article(s)
1
Fan S, Georgi LL, Hebard FV, Zhebentyayeva T, Yu J, Sisco PH, Fitzsimmons SF, Staton ME, Abbott AG, Nelson CD. Mapping QTLs for blight resistance and morpho-phenological traits in inter-species hybrid families of chestnut (Castanea spp.). FRONTIERS IN PLANT SCIENCE 2024;15:1365951. [PMID: 38650705 PMCID: PMC11033410 DOI: 10.3389/fpls.2024.1365951] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Accepted: 03/20/2024] [Indexed: 04/25/2024]
2
Zhang Y, Zhang W, Liu Y, Zheng Y, Nie X, Wu Q, Yu W, Wang Y, Wang X, Fang K, Qin L, Xing Y. GWAS identifies two important genes involved in Chinese chestnut weight and leaf length regulation. PLANT PHYSIOLOGY 2024;194:2387-2399. [PMID: 38114094 DOI: 10.1093/plphys/kiad674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Revised: 11/20/2023] [Accepted: 11/21/2023] [Indexed: 12/21/2023]
3
Jiang H, Zhou C, Ma J, Qu S, Liu F, Sun H, Zhao X, Han Y. Weighted gene co-expression network analysis identifies genes related to HG Type 0 resistance and verification of hub gene GmHg1. FRONTIERS IN PLANT SCIENCE 2023;13:1118503. [PMID: 36777536 PMCID: PMC9911859 DOI: 10.3389/fpls.2022.1118503] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Accepted: 12/28/2022] [Indexed: 06/18/2023]
4
Transcriptome sequencing reveals improved ammonia nitrogen tolerance in Zebra II strain of the Manila clam Ruditapes philippinarum. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY. PART D, GENOMICS & PROTEOMICS 2022;44:101016. [PMID: 35985189 DOI: 10.1016/j.cbd.2022.101016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2022] [Revised: 07/24/2022] [Accepted: 07/24/2022] [Indexed: 01/27/2023]
5
Fernandes P, Colavolpe MB, Serrazina S, Costa RL. European and American chestnuts: An overview of the main threats and control efforts. FRONTIERS IN PLANT SCIENCE 2022;13:951844. [PMID: 36092400 PMCID: PMC9449730 DOI: 10.3389/fpls.2022.951844] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Accepted: 07/29/2022] [Indexed: 06/15/2023]
6
Sandercock AM, Westbrook JW, Zhang Q, Johnson HA, Saielli TM, Scrivani JA, Fitzsimmons SF, Collins K, Perkins MT, Craddock JH, Schmutz J, Grimwood J, Holliday JA. Frozen in time: rangewide genomic diversity, structure, and demographic history of relict American chestnut populations. Mol Ecol 2022;31:4640-4655. [PMID: 35880415 DOI: 10.1111/mec.16629] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Revised: 07/15/2022] [Accepted: 07/18/2022] [Indexed: 11/30/2022]
7
Li X, Li M, Liu X, Jiang Y, Zhao D, Gao J, Wang Z, Jiang Y, Chen C. RNA-Seq Provides Insights into the Mechanisms Underlying Ilyonectria robusta Responding to Secondary Metabolites of Bacillus methylotrophicus NJ13. J Fungi (Basel) 2022;8:jof8080779. [PMID: 35893148 PMCID: PMC9332032 DOI: 10.3390/jof8080779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2022] [Revised: 07/21/2022] [Accepted: 07/21/2022] [Indexed: 11/26/2022]  Open
8
Shirasawa K, Nishio S, Terakami S, Botta R, Marinoni DT, Isobe S. Chromosome-level genome assembly of Japanese chestnut (Castanea crenata Sieb. et Zucc.) reveals conserved chromosomal segments in woody rosids. DNA Res 2021;28:6356520. [PMID: 34424280 PMCID: PMC8435554 DOI: 10.1093/dnares/dsab016] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Accepted: 08/20/2021] [Indexed: 11/14/2022]  Open
9
Spriggs EL, Fertakos ME. Evolution of Castanea in North America: restriction-site-associated DNA sequencing and ecological modeling reveal a history of radiation, range shifts, and disease. AMERICAN JOURNAL OF BOTANY 2021;108:1692-1704. [PMID: 34519029 DOI: 10.1002/ajb2.1726] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 04/18/2021] [Accepted: 04/20/2021] [Indexed: 06/13/2023]
10
Li S, Shi Z, Zhu Q, Tao L, Liang W, Zhao Z. Transcriptome sequencing and differential expression analysis of seed starch accumulation in Chinese chestnut Metaxenia. BMC Genomics 2021;22:617. [PMID: 34388974 PMCID: PMC8362260 DOI: 10.1186/s12864-021-07923-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2020] [Accepted: 08/04/2021] [Indexed: 11/21/2022]  Open
11
Comparative Analysis of the Complete Chloroplast Genomes of Four Chestnut Species (Castanea). FORESTS 2021. [DOI: 10.3390/f12070861] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
12
Zamora-Ballesteros C, Pinto G, Amaral J, Valledor L, Alves A, Diez JJ, Martín-García J. Dual RNA-Sequencing Analysis of Resistant (Pinus pinea) and Susceptible (Pinus radiata) Hosts during Fusarium circinatum Challenge. Int J Mol Sci 2021;22:5231. [PMID: 34063405 PMCID: PMC8156185 DOI: 10.3390/ijms22105231] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Revised: 05/11/2021] [Accepted: 05/13/2021] [Indexed: 12/13/2022]  Open
13
Schultes NP, Castañeda-Ruiz RF, Marra RE, Strzalkowski N, De-Wei L. Striatibotrys neoeucylindrosporus sp. nov., a Stachybotrys-like fungus from North America. Int J Syst Evol Microbiol 2021;71. [PMID: 33886447 DOI: 10.1099/ijsem.0.004778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
14
Pavese V, Moglia A, Gonthier P, Torello Marinoni D, Cavalet-Giorsa E, Botta R. Identification of Susceptibility Genes in Castanea sativa and Their Transcription Dynamics following Pathogen Infection. PLANTS 2021;10:plants10050913. [PMID: 34063239 PMCID: PMC8147476 DOI: 10.3390/plants10050913] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 04/26/2021] [Accepted: 04/28/2021] [Indexed: 02/07/2023]
15
Transformation of American Chestnut (Castanea dentata (Marsh.) Borkh) Using RITA® Temporary Immersion Bioreactors and We Vitro Containers. FORESTS 2020. [DOI: 10.3390/f11111196] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
16
Integrated Proteomic and Metabolomic Profiling of Phytophthora cinnamomi Attack on Sweet Chestnut (Castanea sativa) Reveals Distinct Molecular Reprogramming Proximal to the Infection Site and Away from It. Int J Mol Sci 2020;21:ijms21228525. [PMID: 33198329 PMCID: PMC7697766 DOI: 10.3390/ijms21228525] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Revised: 11/09/2020] [Accepted: 11/10/2020] [Indexed: 01/15/2023]  Open
17
Djami-Tchatchou AT, Matsaunyane LBT, Kalu CM, Ntushelo K. Gene expression and evidence of coregulation of the production of some metabolites of chilli pepper inoculated with Pectobacterium carotovorum ssp. carotovorum. FUNCTIONAL PLANT BIOLOGY : FPB 2019;46:1114-1122. [PMID: 31679560 DOI: 10.1071/fp18244] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2018] [Accepted: 07/12/2019] [Indexed: 06/10/2023]
18
Martínez MT, San-José MDC, Arrillaga I, Cano V, Morcillo M, Cernadas MJ, Corredoira E. Holm Oak Somatic Embryogenesis: Current Status and Future Perspectives. FRONTIERS IN PLANT SCIENCE 2019;10:239. [PMID: 30967881 PMCID: PMC6438927 DOI: 10.3389/fpls.2019.00239] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2018] [Accepted: 02/12/2019] [Indexed: 05/11/2023]
19
Zhu C, Shi F, Chen Y, Wang M, Zhao Y, Geng G. Transcriptome Analysis of Chinese Chestnut (Castanea mollissima Blume) in Response to Dryocosmus kuriphilus Yasumatsu Infestation. Int J Mol Sci 2019;20:ijms20040855. [PMID: 30781446 PMCID: PMC6412832 DOI: 10.3390/ijms20040855] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2019] [Revised: 02/01/2019] [Accepted: 02/10/2019] [Indexed: 12/28/2022]  Open
20
LaBonte NR, Woeste KE. Pooled whole-genome sequencing of interspecific chestnut (Castanea) hybrids reveals loci associated with differences in caching behavior of fox squirrels (Sciurus niger L.). Ecol Evol 2018;8:10638-10654. [PMID: 30519394 PMCID: PMC6262733 DOI: 10.1002/ece3.4336] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2018] [Revised: 06/07/2018] [Accepted: 06/10/2018] [Indexed: 12/30/2022]  Open
21
Zhang L, Wang Z, Shi G, Yang H, Wang X, Zhao H, Zhao S. Effects of drying methods on the nutritional aspects, flavor, and processing properties of Chinese chestnuts. Journal of Food Science and Technology 2018;55:3391-3398. [PMID: 30150797 DOI: 10.1007/s13197-018-3227-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Revised: 04/09/2018] [Accepted: 05/10/2018] [Indexed: 10/28/2022]
22
Zhu S, Wang Y, Xu X, Liu T, Wu D, Zheng X, Tang S, Dai Q. Potential use of high-throughput sequencing of soil microbial communities for estimating the adverse effects of continuous cropping on ramie (Boehmeria nivea L. Gaud). PLoS One 2018;13:e0197095. [PMID: 29750808 PMCID: PMC5947917 DOI: 10.1371/journal.pone.0197095] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2017] [Accepted: 04/26/2018] [Indexed: 01/09/2023]  Open
23
Lu X, Kong J, Meng X, Cao B, Luo K, Dai P, Luan S. Identification of SNP markers associated with tolerance to ammonia toxicity by selective genotyping from de novo assembled transcriptome in Litopenaeus vannamei. FISH & SHELLFISH IMMUNOLOGY 2018;73:158-166. [PMID: 29208499 DOI: 10.1016/j.fsi.2017.12.005] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2017] [Revised: 11/26/2017] [Accepted: 12/01/2017] [Indexed: 06/07/2023]
24
Rigling D, Prospero S. Cryphonectria parasitica, the causal agent of chestnut blight: invasion history, population biology and disease control. MOLECULAR PLANT PATHOLOGY 2018;19:7-20. [PMID: 28142223 PMCID: PMC6638123 DOI: 10.1111/mpp.12542] [Citation(s) in RCA: 189] [Impact Index Per Article: 31.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2016] [Revised: 12/19/2016] [Accepted: 01/26/2017] [Indexed: 05/25/2023]
25
Sharma V, Salwan R, Sharma PN, Gulati A. Integrated Translatome and Proteome: Approach for Accurate Portraying of Widespread Multifunctional Aspects of Trichoderma. Front Microbiol 2017;8:1602. [PMID: 28900417 PMCID: PMC5581810 DOI: 10.3389/fmicb.2017.01602] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2017] [Accepted: 08/07/2017] [Indexed: 12/31/2022]  Open
26
Ćalić I, Koch J, Carey D, Addo-Quaye C, Carlson JE, Neale DB. Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.). BMC Genomics 2017;18:547. [PMID: 28728575 PMCID: PMC5520234 DOI: 10.1186/s12864-017-3931-z] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2017] [Accepted: 07/07/2017] [Indexed: 01/12/2023]  Open
27
Ahmed J, Al-Attar H. Structural properties of high-pressure-treated chestnut flour dispersions. INTERNATIONAL JOURNAL OF FOOD PROPERTIES 2017. [DOI: 10.1080/10942912.2017.1311343] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
28
Transcriptome analysis of Cinnamomum longepaniculatum by high-throughput sequencing. ELECTRON J BIOTECHN 2017. [DOI: 10.1016/j.ejbt.2017.05.006] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
29
Li Y, Zhang T, Zhou J, Yang S, Fan M, Sun X, Zhang M, Xu S, Cha M, Hu X, Qi L, Lin S, Liu S, Hu D. Transcriptome analysis of muskrat scented glands degeneration mechanism. PLoS One 2017;12:e0176935. [PMID: 28472080 PMCID: PMC5417569 DOI: 10.1371/journal.pone.0176935] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2016] [Accepted: 04/19/2017] [Indexed: 12/22/2022]  Open
30
Ye DY, Qi YH, Cao SF, Wei BQ, Zhang HS. Histopathology combined with transcriptome analyses reveals the mechanism of resistance to Meloidogyne incognita in Cucumis metuliferus. JOURNAL OF PLANT PHYSIOLOGY 2017;212:115-124. [PMID: 28314173 DOI: 10.1016/j.jplph.2017.02.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2016] [Revised: 02/05/2017] [Accepted: 02/07/2017] [Indexed: 05/08/2023]
31
Zhao F, Durner J, Winkler JB, Traidl-Hoffmann C, Strom TM, Ernst D, Frank U. Pollen of common ragweed (Ambrosia artemisiifolia L.): Illumina-based de novo sequencing and differential transcript expression upon elevated NO2/O3. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2017;224:503-514. [PMID: 28284545 DOI: 10.1016/j.envpol.2017.02.032] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2016] [Revised: 12/15/2016] [Accepted: 02/14/2017] [Indexed: 05/28/2023]
32
Cipollini M, Dingley NR, Felch P, Maddox C. Evaluation of phenotypic traits and blight-resistance in an American chestnut backcross orchard in Georgia. Glob Ecol Conserv 2017. [DOI: 10.1016/j.gecco.2017.01.004] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]  Open
33
Lu X, Kong J, Luan S, Dai P, Meng X, Cao B, Luo K. Transcriptome Analysis of the Hepatopancreas in the Pacific White Shrimp (Litopenaeus vannamei) under Acute Ammonia Stress. PLoS One 2016;11:e0164396. [PMID: 27760162 PMCID: PMC5070816 DOI: 10.1371/journal.pone.0164396] [Citation(s) in RCA: 73] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Accepted: 09/23/2016] [Indexed: 01/08/2023]  Open
34
Khan A, Sovero V, Gemenet D. Genome-assisted Breeding For Drought Resistance. Curr Genomics 2016;17:330-42. [PMID: 27499682 PMCID: PMC4955035 DOI: 10.2174/1389202917999160211101417] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2015] [Revised: 09/17/2015] [Accepted: 09/19/2015] [Indexed: 11/30/2022]  Open
35
Liu T, Li X, Xie S, Wang L, Yang S. RNA-seq analysis of Paris polyphylla var. yunnanensis roots identified candidate genes for saponin synthesis. PLANT DIVERSITY 2016;38:163-170. [PMID: 30159461 PMCID: PMC6112097 DOI: 10.1016/j.pld.2016.05.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2016] [Revised: 04/28/2016] [Accepted: 05/04/2016] [Indexed: 06/08/2023]
36
Tsai CC, Wu KM, Chiang TY, Huang CY, Chou CH, Li SJ, Chiang YC. Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes. BMC Genomics 2016;17:212. [PMID: 26960548 PMCID: PMC4784368 DOI: 10.1186/s12864-016-2508-6] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2015] [Accepted: 02/22/2016] [Indexed: 11/10/2022]  Open
37
Zhang L, Ming R, Zhang J, Tao A, Fang P, Qi J. De novo transcriptome sequence and identification of major bast-related genes involved in cellulose biosynthesis in jute (Corchorus capsularis L.). BMC Genomics 2015;16:1062. [PMID: 26666317 PMCID: PMC4678609 DOI: 10.1186/s12864-015-2256-z] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2015] [Accepted: 11/30/2015] [Indexed: 12/26/2022]  Open
38
Bazakos C, Manioudaki ME, Sarropoulou E, Spano T, Kalaitzis P. 454 Pyrosequencing of Olive (Olea europaea L.) Transcriptome in Response to Salinity. PLoS One 2015;10:e0143000. [PMID: 26576008 PMCID: PMC4648586 DOI: 10.1371/journal.pone.0143000] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2015] [Accepted: 10/29/2015] [Indexed: 11/19/2022]  Open
39
Sherman A, Rubinstein M, Eshed R, Benita M, Ish-Shalom M, Sharabi-Schwager M, Rozen A, Saada D, Cohen Y, Ophir R. Mango (Mangifera indica L.) germplasm diversity based on single nucleotide polymorphisms derived from the transcriptome. BMC PLANT BIOLOGY 2015;15:277. [PMID: 26573148 PMCID: PMC4647706 DOI: 10.1186/s12870-015-0663-6] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2015] [Accepted: 11/04/2015] [Indexed: 05/29/2023]
40
Staton M, Zhebentyayeva T, Olukolu B, Fang GC, Nelson D, Carlson JE, Abbott AG. Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes. BMC Genomics 2015;16:744. [PMID: 26438416 PMCID: PMC4595192 DOI: 10.1186/s12864-015-1942-1] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2015] [Accepted: 09/19/2015] [Indexed: 01/03/2023]  Open
41
Tuan PA, Chung E, Thwe AA, Li X, Kim YB, Mariadhas VA, Al-Dhabi NA, Lee JH, Park SU. Transcriptional Profiling and Molecular Characterization of Astragalosides, Calycosin, and Calycosin-7-O-β-D-glucoside Biosynthesis in the Hairy Roots of Astragalus membranaceus in Response to Methyl Jasmonate. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2015;63:6231-6240. [PMID: 26072674 DOI: 10.1021/acs.jafc.5b01822] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
42
Plomion C, Aury JM, Amselem J, Alaeitabar T, Barbe V, Belser C, Bergès H, Bodénès C, Boudet N, Boury C, Canaguier A, Couloux A, Da Silva C, Duplessis S, Ehrenmann F, Estrada-Mairey B, Fouteau S, Francillonne N, Gaspin C, Guichard C, Klopp C, Labadie K, Lalanne C, Le Clainche I, Leplé JC, Le Provost G, Leroy T, Lesur I, Martin F, Mercier J, Michotey C, Murat F, Salin F, Steinbach D, Faivre-Rampant P, Wincker P, Salse J, Quesneville H, Kremer A. Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Mol Ecol Resour 2015;16:254-65. [PMID: 25944057 DOI: 10.1111/1755-0998.12425] [Citation(s) in RCA: 81] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2015] [Revised: 04/27/2015] [Accepted: 04/30/2015] [Indexed: 12/31/2022]
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Zou LQ, Kuang XJ, Sun C. Advances in Transcriptomic Studies and Ginsenoside Biosynthesis of American Ginseng. CHINESE HERBAL MEDICINES 2015. [DOI: 10.1016/s1674-6384(15)60028-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]  Open
44
Nejat N, Cahill DM, Vadamalai G, Ziemann M, Rookes J, Naderali N. Transcriptomics-based analysis using RNA-Seq of the coconut (Cocos nucifera) leaf in response to yellow decline phytoplasma infection. Mol Genet Genomics 2015;290:1899-910. [PMID: 25893418 DOI: 10.1007/s00438-015-1046-2] [Citation(s) in RCA: 57] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2015] [Accepted: 04/06/2015] [Indexed: 12/25/2022]
45
Huang S, Liu Z, Yao R, Li D, Feng H. Comparative transcriptome analysis of the petal degeneration mutant pdm in Chinese cabbage (Brassica campestris ssp. pekinensis) using RNA-Seq. Mol Genet Genomics 2015;290:1833-47. [PMID: 25860116 DOI: 10.1007/s00438-015-1041-7] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2014] [Accepted: 03/27/2015] [Indexed: 10/23/2022]
46
Liang M, Yang X, Li H, Su S, Yi H, Chai L, Deng X. De novo transcriptome assembly of pummelo and molecular marker development. PLoS One 2015;10:e0120615. [PMID: 25799271 PMCID: PMC4370633 DOI: 10.1371/journal.pone.0120615] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2014] [Accepted: 01/24/2015] [Indexed: 11/19/2022]  Open
47
Lesur I, Le Provost G, Bento P, Da Silva C, Leplé JC, Murat F, Ueno S, Bartholomé J, Lalanne C, Ehrenmann F, Noirot C, Burban C, Léger V, Amselem J, Belser C, Quesneville H, Stierschneider M, Fluch S, Feldhahn L, Tarkka M, Herrmann S, Buscot F, Klopp C, Kremer A, Salse J, Aury JM, Plomion C. The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release. BMC Genomics 2015;16:112. [PMID: 25765701 PMCID: PMC4350297 DOI: 10.1186/s12864-015-1331-9] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2014] [Accepted: 02/09/2015] [Indexed: 11/03/2022]  Open
48
Zhang L, Lin Q, Feng Y, Fan X, Zou F, Yuan DY, Zeng X, Cao H. Transcriptomic identification and expression of starch and sucrose metabolism genes in the seeds of Chinese chestnut (Castanea mollissima). JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2015;63:929-42. [PMID: 25537355 DOI: 10.1021/jf505247d] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
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Vijayakumar P, Raut AA, Kumar P, Sharma D, Mishra A. De novo assembly and analysis of crow lungs transcriptome. Genome 2015;57:499-506. [PMID: 25633965 DOI: 10.1139/gen-2014-0122] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
50
Transcriptome sequencing in a Tibetan barley landrace with high resistance to powdery mildew. ScientificWorldJournal 2014;2014:594579. [PMID: 25587568 PMCID: PMC4284937 DOI: 10.1155/2014/594579] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2014] [Revised: 12/01/2014] [Accepted: 12/01/2014] [Indexed: 12/01/2022]  Open
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