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Gyadi T, Bharti A, Basack S, Kumar P, Lucchi E. Influential factors in anaerobic digestion of rice-derived food waste and animal manure: A comprehensive review. BIORESOURCE TECHNOLOGY 2024; 413:131398. [PMID: 39236907 DOI: 10.1016/j.biortech.2024.131398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2024] [Revised: 08/28/2024] [Accepted: 08/29/2024] [Indexed: 09/07/2024]
Abstract
Utilization of organic community wastes towards deriving sustainable renewable energy and adequate disposal of the residual has been an important topic of investigation. Anaerobic digestion and co-digestion of rice-derived food waste and animal manure for sustainable biogas generation is crucial from the view-point of community consumption. This paper presents an extensive review of the important and recent contributions in the related areas. The critical physico-chemical parameters involved in such digestion process are analyzed, including temperature, carbon-nitrogen ratio, microorganisms, pH, substrate characteristics, organic loading rate, hydraulic retention time, volatile fatty acids, ammonia, and light/heavy metal ions. Studies implied that the optimum yield of biogas production could be achieved only when the values of the parameters exist in the specific ranges. Few recent studies highlighted the use of emerging techniques including micro-aerobic system, additives, laser radiation, bio-electrochemical field, among others for efficiency enhancement of the digestion process and optimum yield. The entire study provided a set of important conclusions and future research directives are as well proposed.
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Affiliation(s)
- Tado Gyadi
- Department of Civil Engineering, North Eastern Regional Institute of Science and Technology, Nirjuli, Arunachal Pradesh, India
| | - Ajay Bharti
- Department of Civil Engineering, North Eastern Regional Institute of Science and Technology, Nirjuli, Arunachal Pradesh, India
| | - Sudip Basack
- Regent Education and Research Foundation, Affiliated: MAKA University of Technology, Kolkata 700 121, India; Department of Civil Engineering, Graphic Era Deemed to be University, Clement City, Dehradun 248002, India
| | - Pradeep Kumar
- Department of Botany, University of Lucknow, Uttar Pradesh, India
| | - Elena Lucchi
- Dipartimento di Ingegneria Civile e Architettura (DICAr), University of Pavia, Via Ferrata 3, Pavia 27100, Italy.
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Al Zahra W, Ikhsan Shiddieqy M, Anisa R, Yani A, Priyo Purwanto B. The dynamics of nitrous oxide and methane emissions from various types of dairy manure at smallholder dairy farms as affected by storage periods. WASTE MANAGEMENT (NEW YORK, N.Y.) 2024; 183:10-20. [PMID: 38704922 DOI: 10.1016/j.wasman.2024.04.039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Revised: 04/06/2024] [Accepted: 04/22/2024] [Indexed: 05/07/2024]
Abstract
Storing manure emits greenhouse gas (GHG) emissions, including nitrous oxide (N2O) and methane (CH4). However, the emissions from types of manure stored at smallholder dairy farms remains unknown. Hence, the study aims to analyse the dynamics of N2O and CH4 from different types of dairy manure as affected by storage periods. We collected samples from fresh manure (FM-DF1), manure from communal ponds in an urban dairy farm (IP-DF1, FP-DF1, MS-DF1), fresh manure from an urban dairy farm (FM-DF2), and fresh (FM-DF3), separated (FS-DF3), and fermented manure (FR-DF3) from a peri-urban dairy farm, and stored them for eight weeks and analyse them using the closed chamber method. The changes of manure composition including total solids (TS), nitrogen (N), ammonia-nitrogen (N-NH3), and carbon (C) were analysed. Results indicated an increase TS in all treatments except for MS-DF1, while N, N-NH3, and C content decreased in all treatments. The N2O emissions formed at the start, peaked in the middle, and declined towards the end storage period. The CH4 emissions peaked at the start and decreased until the end storage period. Treatment FM-DF2 yield highest cumulative of N2O (0.82 g/m2) and CH4 (41.63 g/m2) compared to other fresh manure treatment. A mixed model analysis detected a significant interaction (p < 0.05) between manure types and storage periods. In conclusion, manure types and storage periods affect the emissions. Changes in manure concentration during storage and animal diets are two important factors influencing emissions. Strategies to reduce emissions include reducing moisture content in manure, shortening storage periods, and improving feed quality.
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Affiliation(s)
- Windi Al Zahra
- Department of Animal Production and Technology, Faculty of Animal Science, IPB University, P.O. Box 16680, Bogor, West Java, Indonesia.
| | - Mohammad Ikhsan Shiddieqy
- Research Centre for Animal Husbandry, National Research and Innovation Agency (BRIN), P.O Box 16911, Cibinong, West Java, Indonesia
| | - Rahma Anisa
- Department of Statistics, Faculty of Mathematics and Natural Sciences, IPB University, P.O Box 16680, Bogor, West Java, Indonesia
| | - Ahmad Yani
- Department of Animal Production and Technology, Faculty of Animal Science, IPB University, P.O. Box 16680, Bogor, West Java, Indonesia
| | - Bagus Priyo Purwanto
- College of Vocational Studies, IPB University, P.O Box 16128 Bogor, West Java, Indonesia
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3
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Truong D, Changey F, Rondags E, Framboisier X, Etienne M, Guedon E. Evaluation of short-circuited electrodes in combination with dark fermentation for promoting biohydrogen production process. Bioelectrochemistry 2024; 157:108631. [PMID: 38199186 DOI: 10.1016/j.bioelechem.2023.108631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Revised: 12/15/2023] [Accepted: 12/19/2023] [Indexed: 01/12/2024]
Abstract
Short-circuited electrodes, in combination with dark fermentation, were evaluated in a biohydrogen production process. The system is based on an innovative design of a non-compartmented electromicrobial bioreactor with a conductive tubular membrane as cathode and a graphite felt as anode. In particular, the electrode specialization occurred when the bioreactor was inoculated with manure as the whole medium and when a vacuum was applied in the tubular membrane, for allowing continuous extraction of gaseous species (H2, CH4, CO2) from the bioreactor. This specialization of the electrodes as anode and cathode was further confirmed by microbial ecology analysis of biofilms and by cyclic voltammetry measurements. In these experimental conditions, the potential of the electrochemical system (short-circuited electrodes) reached values as low as -320 mV vs. SHE, associated with a significant bioH2 production. Moreover, a higher bioH2 production occurred and a potential of the electrochemical system as low as -429 mV vs SHE was temporarily observed, when additional heat treatments of the whole manure were applied in order to remove methanogen microorganisms (i.e., hydrogen consumers). In the bioreactor, the higher production of bioH2 would be promoted by electrofermentation from the current flow observed between short-circuited anode and cathode.
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Affiliation(s)
- Delphine Truong
- Université de Lorraine, CNRS, LRGP, 54000 Nancy, France; Université de Lorraine, CNRS, LCPME, 54000 Nancy, France
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Kumar A, Sharma S, Dindhoria K, Thakur A, Kumar R. Insight into physico-chemical properties and microbial community structure of biogas slurry from household biogas plants of sub-Himalaya for its implications in improved biogas production. Int Microbiol 2024:10.1007/s10123-024-00530-w. [PMID: 38760649 DOI: 10.1007/s10123-024-00530-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Revised: 04/21/2024] [Accepted: 05/07/2024] [Indexed: 05/19/2024]
Abstract
Numerous metagenomics studies, conducted in both full-scale anaerobic digesters and household biogas plants, have shed light on the composition and activity of microbial flora essential for optimizing the performance of biogas reactors, underscoring the significance of microbial community composition in biogas plant efficiency. Although the efficiency of household biogas plants in the sub-Himalayan region has been reported, there is no literature evidence on the microbial community structure of such household biogas plants in the sub-Himalayan region. The current study evaluated the physico-chemical properties and bacterial community structure from the slurry samples of household biogas plants prevalent in the sub-Himalayan region. The slurry samples were observed to be rich in nutrients; however, their carbon and nitrogen contents were higher than the recommended standard values of liquid-fermented organic manure. The species richness and diversity indices (Chao1, Shannon, and Simpson) of household biogas plants were quite similar to the advanced biogas reactors operating at mesophilic conditions. 16S rRNA gene amplicon sequencing reveals microbial diversity, showing a higher abundance of Firmicutes (70.9%) and Euryarchaeota (9.52%) in advanced biogas reactors compared to household biogas plants. Microbial analysis shows a lack of beneficial microbes for anaerobic digestion, which might be the reason for inefficient biogas production in household biogas plants of the sub-Himalayan region. The lack of efficient bacterial biomass may also be attributed to the digester design, feedstock, and ambient temperatures. This study emphasized the establishment of efficient microbial consortia for enhanced degradation rates that may increase the methane yield in biogas plants.
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Affiliation(s)
- Aman Kumar
- Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, 176061, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Sonia Sharma
- Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, 176061, India
| | - Kiran Dindhoria
- Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, 176061, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Aman Thakur
- Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, 176061, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Rakshak Kumar
- Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, 176061, India.
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
- Department of Molecular Biology & Bioinformatics, Tripura University (A Central University), Suryamaninagar, Tripura, 799022, India.
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Gaur S, Kaur M, Kalra R, Rene ER, Goel M. Application of microbial resources in biorefineries: Current trend and future prospects. Heliyon 2024; 10:e28615. [PMID: 38628756 PMCID: PMC11019186 DOI: 10.1016/j.heliyon.2024.e28615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2023] [Revised: 03/21/2024] [Accepted: 03/21/2024] [Indexed: 04/19/2024] Open
Abstract
The recent growing interest in sustainable and alternative sources of energy and bio-based products has driven the paradigm shift to an integrated model termed "biorefinery." Biorefinery framework implements the concepts of novel eco-technologies and eco-efficient processes for the sustainable production of energy and value-added biomolecules. The utilization of microbial resources for the production of various value-added products has been documented in the literatures. However, the appointment of these microbial resources in integrated resource management requires a better understanding of their status. The main of aim of this review is to provide an overview on the defined positioning and overall contribution of the microbial resources, i.e., algae, fungi and bacteria, for various bioprocesses and generation of multiple products from a single biorefinery. By utilizing waste material as a feedstock, biofuels can be generated by microalgae while sequestering environmental carbon and producing value added compounds as by-products. In parallel, fungal biorefineries are prolific producers of lignocellulose degrading enzymes along with pharmaceutically important novel products. Conversely, bacterial biorefineries emerge as a preferred platform for the transformation of standard cells into proficient bio-factories, developing chassis and turbo cells for enhanced target compound production. This comprehensive review is poised to offer an intricate exploration of the current trends, obstacles, and prospective pathways of microbial biorefineries, for the development of future biorefineries.
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Affiliation(s)
- Suchitra Gaur
- Sustainable Agriculture Program, The Energy and Resources Institute, TERI-Gram, Gurugram, 122001, Haryana, India
| | - Mehak Kaur
- Sustainable Agriculture Program, The Energy and Resources Institute, TERI-Gram, Gurugram, 122001, Haryana, India
| | - Rishu Kalra
- Sustainable Agriculture Program, The Energy and Resources Institute, TERI-Gram, Gurugram, 122001, Haryana, India
| | - Eldon R. Rene
- Department of Water Supply, Sanitation and Environmental Engineering, IHE Delft Institute for Water Education, Westvest 7, Delft, 2601DA, the Netherlands
| | - Mayurika Goel
- Sustainable Agriculture Program, The Energy and Resources Institute, TERI-Gram, Gurugram, 122001, Haryana, India
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Finn DR, Rohe L, Krause S, Guliyev J, Loewen A, Tebbe CC. Methanogenesis in biogas reactors under inhibitory ammonia concentration requires community-wide tolerance. Appl Microbiol Biotechnol 2023; 107:6717-6730. [PMID: 37672072 PMCID: PMC10567828 DOI: 10.1007/s00253-023-12752-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 08/11/2023] [Accepted: 08/26/2023] [Indexed: 09/07/2023]
Abstract
Ammonia (NH3) inhibition represents a major limitation to methane production during anaerobic digestion of organic material in biogas reactors. This process relies on co-operative metabolic interactions between diverse taxa at the community-scale. Despite this, most investigations have focused singularly on how methanogenic Archaea respond to NH3 stress. With a high-NH3 pre-adapted and un-adapted community, this study investigated responses to NH3 inhibition both at the community-scale and down to individual taxa. The pre-adapted community performed methanogenesis under inhibitory NH3 concentrations better than the un-adapted. While many functionally important phyla were shared between the two communities, only taxa from the pre-adapted community were robust to NH3. Functionally important phyla were mostly comprised of sensitive taxa (≥ 50%), yet all groups, including methanogens, also possessed tolerant individuals (10-50%) suggesting that potential mechanisms for tolerance are non-specific and widespread. Hidden Markov Model-based phylogenetic analysis of methanogens confirmed that NH3 tolerance was not restricted to specific taxonomic groups, even at the genus level. By reconstructing covarying growth patterns via network analyses, methanogenesis by the pre-adapted community was best explained by continued metabolic interactions (edges) between tolerant methanogens and other tolerant taxa (nodes). However, under non-inhibitory conditions, sensitive taxa re-emerged to dominate the pre-adapted community, suggesting that mechanisms of NH3 tolerance can be disadvantageous to fitness without selection pressure. This study demonstrates that methanogenesis under NH3 inhibition depends on broad-scale tolerance throughout the prokaryotic community. Mechanisms for tolerance seem widespread and non-specific, which has practical significance for the development of robust methanogenic biogas communities. KEY POINTS: • Ammonia pre-adaptation allows for better methanogenesis under inhibitory conditions. • All functionally important prokaryote phyla have some ammonia tolerant individuals. • Methanogenesis was likely dependent on interactions between tolerant individuals.
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Affiliation(s)
- Damien R Finn
- Thünen Institute for Biodiversity, Johann Heinrich von Thünen Institute, 38116, Braunschweig, Germany.
| | - Lena Rohe
- Thünen Institute for Climate-Smart Agriculture, Johann Heinrich von Thünen Institute, 38116, Braunschweig, Germany
| | - Sascha Krause
- School of Ecological and Environmental Sciences, East China Normal University, Shanghai, 200062, China
| | - Jabrayil Guliyev
- Faculty of Resource Management, University of Applied Sciences and Arts (HAWK), 37085, Göttingen, Germany
| | - Achim Loewen
- Faculty of Resource Management, University of Applied Sciences and Arts (HAWK), 37085, Göttingen, Germany
| | - Christoph C Tebbe
- Thünen Institute for Biodiversity, Johann Heinrich von Thünen Institute, 38116, Braunschweig, Germany
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Bing RG, Willard DJ, Crosby JR, Adams MWW, Kelly RM. Whither the genus Caldicellulosiruptor and the order Thermoanaerobacterales: phylogeny, taxonomy, ecology, and phenotype. Front Microbiol 2023; 14:1212538. [PMID: 37601363 PMCID: PMC10434631 DOI: 10.3389/fmicb.2023.1212538] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Accepted: 07/20/2023] [Indexed: 08/22/2023] Open
Abstract
The order Thermoanaerobacterales currently consists of fermentative anaerobic bacteria, including the genus Caldicellulosiruptor. Caldicellulosiruptor are represented by thirteen species; all, but one, have closed genome sequences. Interest in these extreme thermophiles has been motivated not only by their high optimal growth temperatures (≥70°C), but also by their ability to hydrolyze polysaccharides including, for some species, both xylan and microcrystalline cellulose. Caldicellulosiruptor species have been isolated from geographically diverse thermal terrestrial environments located in New Zealand, China, Russia, Iceland and North America. Evidence of their presence in other terrestrial locations is apparent from metagenomic signatures, including volcanic ash in permafrost. Here, phylogeny and taxonomy of the genus Caldicellulosiruptor was re-examined in light of new genome sequences. Based on genome analysis of 15 strains, a new order, Caldicellulosiruptorales, is proposed containing the family Caldicellulosiruptoraceae, consisting of two genera, Caldicellulosiruptor and Anaerocellum. Furthermore, the order Thermoanaerobacterales also was re-assessed, using 91 genome-sequenced strains, and should now include the family Thermoanaerobacteraceae containing the genera Thermoanaerobacter, Thermoanaerobacterium, Caldanaerobacter, the family Caldanaerobiaceae containing the genus Caldanaerobius, and the family Calorimonaceae containing the genus Calorimonas. A main outcome of ANI/AAI analysis indicates the need to reclassify several previously designated species in the Thermoanaerobacterales and Caldicellulosiruptorales by condensing them into strains of single species. Comparative genomics of carbohydrate-active enzyme inventories suggested differentiating phenotypic features, even among strains of the same species, reflecting available nutrients and ecological roles in their native biotopes.
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Affiliation(s)
- Ryan G. Bing
- Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, United States
| | - Daniel J. Willard
- Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, United States
| | - James R. Crosby
- Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, United States
| | - Michael W. W. Adams
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, United States
| | - Robert M. Kelly
- Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, United States
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Wirth R, Bagi Z, Shetty P, Szuhaj M, Cheung TTS, Kovács KL, Maróti G. Inter-kingdom interactions and stability of methanogens revealed by machine-learning guided multi-omics analysis of industrial-scale biogas plants. THE ISME JOURNAL 2023:10.1038/s41396-023-01448-3. [PMID: 37286740 DOI: 10.1038/s41396-023-01448-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 05/23/2023] [Accepted: 05/26/2023] [Indexed: 06/09/2023]
Abstract
Multi-omics analysis is a powerful tool for the detection and study of inter-kingdom interactions, such as those between bacterial and archaeal members of complex biogas-producing microbial communities. In the present study, the microbiomes of three industrial-scale biogas digesters, each fed with different substrates, were analysed using a machine-learning guided genome-centric metagenomics framework complemented with metatranscriptome data. This data permitted us to elucidate the relationship between abundant core methanogenic communities and their syntrophic bacterial partners. In total, we detected 297 high-quality, non-redundant metagenome-assembled genomes (nrMAGs). Moreover, the assembled 16 S rRNA gene profiles of these nrMAGs showed that the phylum Firmicutes possessed the highest copy number, while the representatives of the archaeal domain had the lowest. Further investigation of the three anaerobic microbial communities showed characteristic alterations over time but remained specific to each industrial-scale biogas plant. The relative abundance of various microorganisms as revealed by metagenome data was independent from corresponding metatranscriptome activity data. Archaea showed considerably higher activity than was expected from their abundance. We detected 51 nrMAGs that were present in all three biogas plant microbiomes with different abundances. The core microbiome correlated with the main chemical fermentation parameters, and no individual parameter emerged as a predominant shaper of community composition. Various interspecies H2/electron transfer mechanisms were assigned to hydrogenotrophic methanogens in the biogas plants that ran on agricultural biomass and wastewater. Analysis of metatranscriptome data revealed that methanogenesis pathways were the most active of all main metabolic pathways.
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Affiliation(s)
- Roland Wirth
- Institute of Plant Biology, Biological Research Centre, Szeged, Hungary
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Zoltán Bagi
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Prateek Shetty
- Institute of Plant Biology, Biological Research Centre, Szeged, Hungary
| | - Márk Szuhaj
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | | | - Kornél L Kovács
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Gergely Maróti
- Institute of Plant Biology, Biological Research Centre, Szeged, Hungary.
- Faculty of Water Sciences, University of Public Service, Baja, Hungary.
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Liu S, Zhou A, Fan Y, Duan Y, Liu Z, He Z, Liu W, Yue X. Using heat-activated persulfate to accelerate short-chain fatty acids production from waste activated sludge fermentation triggered by sulfate-reducing microbial consortium. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 861:160795. [PMID: 36493824 DOI: 10.1016/j.scitotenv.2022.160795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2022] [Revised: 12/04/2022] [Accepted: 12/05/2022] [Indexed: 06/17/2023]
Abstract
Persulfate has been applied extensively for waste activated sludge (WAS) decomposition due to the strong oxidizing sulfate radical generated as a product. However, the efficiency is not improved without activation to produce free radicals. In this study, a novel coupling strategy of heat-activated persulfate (Heat_PS) pretreatment and sulfate-reducing bacteria (SRB) triggering was explored to enhance short-chain fatty acids (SCFAs) produced by WAS fermentation. The remaining sulfate acts as an essential acceptor of electrons for the metabolism of synergistic SRB, thereby boosting WAS acidification by energetic cooperation with anaerobic fermenters. The results showed that SCFAs yield in the Heat_PS + SRB group peaked at 431.89 mg COD/gVSS, with the proportion of acetate reaching 57.8 %. This was 6.33 and 1.75 times higher than that in raw and single Heat_PS treated WAS, respectively. Carbon balance revealed a conversion rate of 26.1 % of carbon content in WAS to SCFAs, with 4.5 % lower CO2 equivalents emitted than that in raw WAS fermentation by the assessments of environmental impacts. This was partially attributed to the strong decomposition of WAS by SO4•- and •OH oxidation from heat-activated PS and the SRB trigger. In addition, the synergistic relationship among acidogenic/fermentative bacteria and SRB consortia was further verified by the positive correlation among Desulfovibrio, the hydrolytic Escherichia-Shigella, Morganella and the fermetative Macellibacteroides and Bacteroides, as revealed by molecular ecological networks (MENs) analysis. The results of this study may highlight the cooperation of the synergistic micribial consortia as an additional perspective for the recovery of value-added biological metabolites from complex biotransformation.
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Affiliation(s)
- Shuli Liu
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan 030024, China
| | - Aijuan Zhou
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan 030024, China; Shanxi Engineer Research Institute of Sludge Disposition and Resources, Taiyuan University of Technology, Taiyuan 030024, China.
| | - Yaxin Fan
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan 030024, China
| | - Yanqing Duan
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan 030024, China; Department of Environmental and Safety Engineering, Taiyuan Institute of Technology, Taiyuan 030008, China.
| | - Zhihong Liu
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan 030024, China
| | - Zhangwei He
- School of Environment and Municipal Engineering, Xi'An University of Architecture and Technology, Xi'An 710055, China
| | - Wenzong Liu
- School of Civil and Environmental Engineering, Harbin Institute of Technology Shenzhen, Shenzhen 51805, China
| | - Xiuping Yue
- College of Environmental Science and Engineering, Taiyuan University of Technology, Taiyuan 030024, China; Shanxi Engineer Research Institute of Sludge Disposition and Resources, Taiyuan University of Technology, Taiyuan 030024, China
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10
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A Review of Basic Bioinformatic Techniques for Microbial Community Analysis in an Anaerobic Digester. FERMENTATION-BASEL 2023. [DOI: 10.3390/fermentation9010062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Biogas production involves various types of intricate microbial populations in an anaerobic digester (AD). To understand the anaerobic digestion system better, a broad-based study must be conducted on the microbial population. Deep understanding of the complete metagenomics including microbial structure, functional gene form, similarity/differences, and relationships between metabolic pathways and product formation, could aid in optimization and enhancement of AD processes. With advancements in technologies for metagenomic sequencing, for example, next generation sequencing and high-throughput sequencing, have revolutionized the study of microbial dynamics in anaerobic digestion. This review includes a brief introduction to the basic process of metagenomics research and includes a detailed summary of the various bioinformatics approaches, viz., total investigation of data obtained from microbial communities using bioinformatics methods to expose metagenomics characterization. This includes (1) methods of DNA isolation and sequencing, (2) investigation of anaerobic microbial communities using bioinformatics techniques, (3) application of the analysis of anaerobic microbial community and biogas production, and (4) restriction and prediction of bioinformatics analysis on microbial metagenomics. The review has been concluded, giving a summarized insight into bioinformatic tools and also promoting the future prospects of integrating humungous data with artificial intelligence and neural network software.
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Xu W, He X, Wang C, Zhao Z. Effect of granular activated carbon adsorption and size of microbial aggregates in inoculum on stimulating direct interspecies electron transfer during anaerobic digestion of fat, oil, and grease. BIORESOURCE TECHNOLOGY 2023; 368:128289. [PMID: 36372383 DOI: 10.1016/j.biortech.2022.128289] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2022] [Revised: 11/01/2022] [Accepted: 11/03/2022] [Indexed: 06/16/2023]
Abstract
To investigate the effect of granular activated carbon (GAC) adsorption and size of microbial aggregates in inoculum on stimulating direct interspecies electron transfer (DIET) during anaerobic digestion of fat, oil, and grease (FOG), seed sludge was divided into two inocula (big (>0.85 mm)/small (0.15-0.85 mm)) for FOG digestion with/without GAC. More long-chain fatty acids (LCFAs) were adsorbed on GAC in the reactor with small aggregates than that with big aggregates, corresponding to 57 % and 10 % decreased methane production, respectively. Adsorption of unsaturated LCFAs (e.g., oleic acid) on GAC was found to reduce LCFA bioavailability, hinder DIET via GAC, and change community structure. Compared to pre-adsorption of oleic acid on GAC, pre-attachment of microbes on GAC resulted in 5.6-fold higher methane yield for oleic acid digestion. Together, competition of LCFA adsorption between GAC and microbial aggregates is essential for enhanced methane recovery from FOG digestion via GAC-induced DIET.
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Affiliation(s)
- Weijia Xu
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, China
| | - Xia He
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, China; Guangxi Key Laboratory of Environmental Pollution Control Theory and Technology, Guilin University of Technology, Guilin 541006, China.
| | - Chun Wang
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, China
| | - Zihao Zhao
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, China
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12
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He X, Xu W, Lu J, Wu J, Guo Z, Wei X, Wang C. Enhanced direct interspecies electron transfer and methane production during anaerobic digestion of fat, oil, and grease by coupling carbon-based conductive materials and exogenous hydrogen. BIORESOURCE TECHNOLOGY 2022; 364:128083. [PMID: 36216280 DOI: 10.1016/j.biortech.2022.128083] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Revised: 10/01/2022] [Accepted: 10/04/2022] [Indexed: 06/16/2023]
Abstract
To investigate the combination of carbon-based conductive materials and exogenous hydrogen (EH2) on methane recovery from fat, oil, and grease (FOG), granular activated carbon (GAC) and carbon cloth (CC) were chosen to collaborate with EH2, resulting in increased methane production by 59 % and 84 %, respectively. Further digestion of long chain fatty acids (LCFAs) confirms that enhanced direct interspecies electron transfer (DIET) was achieved in the reactors with GAC/CC + EH2 than those with GAC/CC only. Other evidences (such as increased microbial population and rapid degradation of volatile fatty acids) were found to support the role of GAC/CC + EH2 in promotion of DIET. Significant change of microbial community was observed using GAC/CC + EH2, which was mainly attributed to the enrichment of electrogenic species (such as Spirochaetaceae, Syntrophomonas palmitatica, and Methanosaeta), leading to some changes in metabolic pathways during acidogenesis and methanogenesis. Together, enhanced DIET was achieved by GAC/CC + EH2, thus improving the methane recovery from FOG.
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Affiliation(s)
- Xia He
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, China
| | - Weijia Xu
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, China
| | - Jian Lu
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, Shandong 264003, China.
| | - Jun Wu
- Yantai Research Institute, Harbin Engineering University, Yantai, Shandong 264006, China
| | - Zhenyu Guo
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, China
| | - Xuerui Wei
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, China
| | - Chun Wang
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, China
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13
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Kumar R, Kumar R, Brar SK, Kaur G. Next-generation -omics approaches to drive carboxylate production by acidogenic fermentation of food waste: a review. Bioengineered 2022; 13:14987-15002. [PMID: 37105768 DOI: 10.1080/21655979.2023.2180583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/29/2023] Open
Abstract
Acidogenic fermentation of food waste using mixed microbial cultures can produce carboxylates [or volatile fatty acids (VFA)] as high-valued bioproducts via a complex interplay of microorganisms during different stages of this process. However, the present fermentation systems are incapable of reaching the industrially relevant VFA production yields of ≥50 g/L primarly due to the complex process operation, competitive metabolic pathways, and limited understanding of microbial interplays. Recent reports have demonstrated the significant roles played by microbial communities from different phyla, which work together to control the process kinetics of various stages underlying acidogenic fermentation. In order to fully delineate the abundance, structure, and functionality of these microbial communities, next-generation high-throughput meta-omics technologies are required. In this article, we review the potential of metagenomics and metatranscriptomics approaches to enable microbial community engineering. Specifically, a deeper analysis of taxonomic relationships, shifts in microbial communities, and differences in the genetic expression of key pathway enzymes under varying operational and environmental parameters of acidogenic fermentation could lead to the identification of species-level functionalities for both cultivable and non-cultivable microbial fractions. Furthermore, it could also be used for successful gene sequence-guided microbial isolation and consortium development for bioaugmentation to allow VFA production with high concentrations and purity. Such highly controlled and engineered microbial systems could pave the way for tailored and high-yielding VFA synthesis, thereby creating a petrochemically competitive waste-to-value chain and promoting the circular bioeconomy.Research HighlightsMixed microbial mediated acidogenic fermentation of food waste.Metagenomics and metatranscriptomics based microbial community analysis.Omics derived function-associated microbial isolation and consortium engineering.High-valued sustainable carboxylate bio-products, i.e. volatile fatty acids.
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Affiliation(s)
- Reema Kumar
- Department of Civil Engineering, Lassonde School of Engineering, York University, Toronto, Ontario, Canada
| | - Rajat Kumar
- Department of Biology, Hong Kong Baptist University, Kowloon Tong, Hong Kong
| | - Satinder K Brar
- Department of Civil Engineering, Lassonde School of Engineering, York University, Toronto, Ontario, Canada
| | - Guneet Kaur
- Department of Civil Engineering, Lassonde School of Engineering, York University, Toronto, Ontario, Canada
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14
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Zhan Y, Cao X, Xiao Y, Wei X, Wu S, Zhu J. Start-up of co-digestion of poultry litter and wheat straw in anaerobic sequencing batch reactor by gradually increasing organic loading rate: Methane production and microbial community analysis. BIORESOURCE TECHNOLOGY 2022; 354:127232. [PMID: 35483532 DOI: 10.1016/j.biortech.2022.127232] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Revised: 04/22/2022] [Accepted: 04/23/2022] [Indexed: 05/23/2023]
Abstract
Anaerobic co-digestion (ACoD) of poultry litter (PL) and wheat straw (WS) in an anaerobic sequencing batch reactor (ASBR) for continuous bio-energy generation was started up for the first time by gradually increasing the organic loading rate (OLR). A steady-state was reached with a daily biogas production of (13.06 ± 0.21) L and methane content of (54.38 ± 0.53) %. The subsequent regular operation achieved a daily methane yield of (100.41-188.65) mL CH4/g VS added and a total chemical oxygen demand (tCOD) removal rate of (70.3-85.9) % in the effluent under different operating parameters. The overall microbial community became more uniform, and the dominant aceticlastic methanogen of Methanosaeta was enriched after the start-up. While the microbial community was largely stable in the overall structure since the regular operation. Therefore, the start-up of the ACoD of PL and WS was successful with stable and continuous methane production.
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Affiliation(s)
- Yuanhang Zhan
- Department of Biological and Agricultural Engineering, University of Arkansas, Fayetteville, AR 72701, USA.
| | - Xiaoxia Cao
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, Belfast BT9 5DL, UK
| | - Yiting Xiao
- Department of Biological and Agricultural Engineering, University of Arkansas, Fayetteville, AR 72701, USA
| | - Xiaoyuan Wei
- Department of Animal Science, University of Arkansas, Fayetteville, AR 72701, USA
| | - Sarah Wu
- Department of Chemical and Biological Engineering, University of Idaho, Moscow, ID 83844, USA
| | - Jun Zhu
- Department of Biological and Agricultural Engineering, University of Arkansas, Fayetteville, AR 72701, USA
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15
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Delineating the Drivers and Functionality of Methanogenic Niches within an Arid Landfill. Appl Environ Microbiol 2022; 88:e0243821. [PMID: 35404071 PMCID: PMC9088289 DOI: 10.1128/aem.02438-21] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Microbial communities mediate the transformation of organic matter within landfills into methane (CH4). Yet their ecological role in CH4 production is rarely evaluated. To characterize the microbiome associated with this biotransformation, the overall community and methanogenic Archaea were surveyed in an arid landfill using leachate collected from distinctly aged landfill cells (i.e., younger, intermediate, and older). We hypothesized that distinct methanogenic niches exist within an arid landfill, driven by geochemical gradients that developed under extended and age-dependent waste biodegradation stages. Using 16S rRNA and mcrA gene amplicon sequencing, we identified putative methanogenic niches as follows. The order Methanomicrobiales was the most abundant order in leachate from younger cells, where leachate temperature and propionate concentrations were measured at 41.8°C ± 1.7°C and 57.1 ± 10.7 mg L−1. In intermediate-aged cells, the family Methanocellaceae was identified as a putative specialist family under intermediate-temperature and -total dissolved solid (TDS) conditions, wherein samples had a higher alpha diversity index and near CH4 concentrations. In older-aged cells, accumulating metals and TDS supported Methanocorpusculaceae, “Candidatus Bathyarchaeota,” and “Candidatus Verstraetearchaeota” operational taxonomic units (OTUs). Consistent with the mcrA data, we assayed methanogenic activity across the age gradient through stable isotopic measurements of δ13C of CH4 and δ13C of CO2. The majority (80%) of the samples’ carbon fractionation was consistent with hydrogenotrophic methanogenesis. Together, we report age-dependent geochemical gradients detected through leachate in an arid landfill seemingly influencing CH4 production, niche partitioning, and methanogenic activity. IMPORTANCE Microbiome analysis is becoming common in select municipal and service ecosystems, including wastewater treatment and anaerobic digestion, but its potential as a microbial-status-informative tool to promote or mitigate CH4 production has not yet been evaluated in landfills. Methanogenesis mediated by Archaea is highly active in solid-waste microbiomes but is commonly neglected in studies employing next-generation sequencing techniques. Identifying methanogenic niches within a landfill offers detail into operations that positively or negatively impact the commercial production of methane known as biomethanation. We provide evidence that the geochemistry of leachate and its microbiome can be a variable accounting for ecosystem-level (coarse) variation of CH4 production, where we demonstrate through independent assessments of leachate and gas collection that the functional variability of an arid landfill is linked to the composition of methanogenic Archaea.
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16
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Kong Z, Li L, Wu J, Rong C, Wang T, Chen R, Sano D, Li YY. Unveiling the characterization and development of prokaryotic community during the start-up and long-term operation of a pilot-scale anaerobic membrane bioreactor for the treatment of real municipal wastewater. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 813:152643. [PMID: 34963601 DOI: 10.1016/j.scitotenv.2021.152643] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Revised: 12/16/2021] [Accepted: 12/19/2021] [Indexed: 06/14/2023]
Abstract
The anaerobic membrane bioreactor (AnMBR) is a promising sustainable process and technology for the treatment of municipal wastewater from the perspective of carbon neutrality. In this study, a large pilot-scale AnMBR was constructed and the microbial community development of the anaerobic digested sludge in the AnMBR was determined during the treatment of municipal wastewater. The AnMBR system was conducted for 217 days during a long-term operation with the feed of real municipal wastewater. The characterization and dynamics of the microorganisms revealed that a stable prokaryotic community was gradually achieved. In the community of methane-producing archaea (or methanogens), the acetotrophic methanogen Methanosaeta was significantly enriched at an ambient temperature of 25 °C with an overwhelming relative abundance in the entire community. The abundance of Methanosaeta was even higher than the most abundant bacterial phyla Chloroflexi, Firmicutes, Proteobacteria and Bacteroidetes. This phenomenon is quite different from that found in other typical anaerobic systems. The massive enrichment of methanogens is the key to maintaining stable methane production in the treatment of municipal wastewater by the AnMBR. The interspecies cooperation of major functional bacterial groups including protein/carbohydrate/cellulose-degrading (genera Anaerovorax, Aminomonas, Levilinea, Flexilinea and Ruminococcus etc.), sulfate-reducing (Desulfovibrio and Desulfomicrobium etc.) and syntrophic (Syntrophorhabdus and Syntrophus etc.) bacteria with acetotrophic and hydrogenotrophic archaea enhances the stability of reactor operation and help to acclimate the entire prokaryotic community to the characteristics of real municipal wastewater.
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Affiliation(s)
- Zhe Kong
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou 215009, China; National and Local Joint Engineering Laboratory of Municipal Sewage Resource Utilization Technology, Suzhou University of Science and Technology, Suzhou 215009, China; Jiangsu Collaborative Innovation Center of Water Treatment Technology and Material, Suzhou University of Science and Technology, Suzhou 215009, China; Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, Aoba Ward, Sendai, Miyagi 980-8579, Japan.
| | - Lu Li
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou 215009, China; Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, Aoba Ward, Sendai, Miyagi 980-8579, Japan
| | - Jiang Wu
- Center for Material Cycles and Waste Management Research, National Institute for Environmental Studies, Tsukuba 305-8506, Japan
| | - Chao Rong
- Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, Aoba Ward, Sendai, Miyagi 980-8579, Japan
| | - Tianjie Wang
- Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, Aoba Ward, Sendai, Miyagi 980-8579, Japan
| | - Rong Chen
- International S&T Cooperation Center for Urban Alternative Water Resources Development, Key Lab of Environmental Engineering, Shaanxi Province, Xi'an University of Architecture and Technology, No. 13 Yanta Road, Xi'an 710055, PR China
| | - Daisuke Sano
- Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, Aoba Ward, Sendai, Miyagi 980-8579, Japan
| | - Yu-You Li
- Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, Aoba Ward, Sendai, Miyagi 980-8579, Japan.
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17
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Mercado JV, Koyama M, Nakasaki K. Short-term changes in the anaerobic digestion microbiome and biochemical pathways with changes in organic load. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 813:152585. [PMID: 34953835 DOI: 10.1016/j.scitotenv.2021.152585] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2021] [Revised: 12/16/2021] [Accepted: 12/17/2021] [Indexed: 06/14/2023]
Abstract
Fluctuations in organic loading rate are frequently experienced in practical-scale anaerobic digestion systems. These impose shocks to the microbiome leading to process instability and failure. This study elucidated the short-term changes in biochemical pathways and the contributions of microbial groups involved in anaerobic digestion with varying organic load shocks. A mixture of starch and hipolypeptone corresponding to a carbon-to‑nitrogen ratio of 25 was used as substrate. Batch vial reactors were run using acclimatized sludge fed with organic load varying from 0 to 5 g VS/L. Methane yield decreased with increasing organic load. The microbiome alpha diversity represented as the number of operational taxonomic units (OTUs) and the Shannon index both decreased with organic load indicating microbiome specialization. The biochemical pathways predicted using PICRUSt2 were analyzed along with the corresponding contributions of microbial groups leading to a proposed pathway of substrate utilization. Genus Trichococcus (order Lactobacillales) increased in contribution to starch degradation pathways with increase in organic load while genus Macellibacteroides (order Bacteroidales) was prominent in contribution to bacterial anaerobic digestion pathways. Strictly acetoclastic Methanosaeta increased in prominence over hydrogenotrophic Methanolinea with increase in organic load. Results from this study provide better understanding of how anaerobic digesters respond to organic load shocks.
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Affiliation(s)
- Jericho Victor Mercado
- School of Environment and Society, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8550, Japan
| | - Mitsuhiko Koyama
- School of Environment and Society, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8550, Japan
| | - Kiyohiko Nakasaki
- School of Environment and Society, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8550, Japan.
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18
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Harirchi S, Wainaina S, Sar T, Nojoumi SA, Parchami M, Parchami M, Varjani S, Khanal SK, Wong J, Awasthi MK, Taherzadeh MJ. Microbiological insights into anaerobic digestion for biogas, hydrogen or volatile fatty acids (VFAs): a review. Bioengineered 2022; 13:6521-6557. [PMID: 35212604 PMCID: PMC8973982 DOI: 10.1080/21655979.2022.2035986] [Citation(s) in RCA: 45] [Impact Index Per Article: 22.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Revised: 12/20/2021] [Accepted: 01/17/2022] [Indexed: 11/02/2022] Open
Abstract
In the past decades, considerable attention has been directed toward anaerobic digestion (AD), which is an effective biological process for converting diverse organic wastes into biogas, volatile fatty acids (VFAs), biohydrogen, etc. The microbial bioprocessing takes part during AD is of substantial significance, and one of the crucial approaches for the deep and adequate understanding and manipulating it toward different products is process microbiology. Due to highly complexity of AD microbiome, it is critically important to study the involved microorganisms in AD. In recent years, in addition to traditional methods, novel molecular techniques and meta-omics approaches have been developed which provide accurate details about microbial communities involved AD. Better understanding of process microbiomes could guide us in identifying and controlling various factors in both improving the AD process and diverting metabolic pathway toward production of selective bio-products. This review covers various platforms of AD process that results in different final products from microbiological point of view. The review also highlights distinctive interactions occurring among microbial communities. Furthermore, assessment of these communities existing in the anaerobic digesters is discussed to provide more insights into their structure, dynamics, and metabolic pathways. Moreover, the important factors affecting microbial communities in each platform of AD are highlighted. Finally, the review provides some recent applications of AD for the production of novel bio-products and deals with challenges and future perspectives of AD.
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Affiliation(s)
- Sharareh Harirchi
- Swedish Centre for Resource Recovery, University of Borås, 50190Borås, Sweden
| | - Steven Wainaina
- Swedish Centre for Resource Recovery, University of Borås, 50190Borås, Sweden
| | - Taner Sar
- Swedish Centre for Resource Recovery, University of Borås, 50190Borås, Sweden
| | - Seyed Ali Nojoumi
- Microbiology Research Center, Pasteur Institute of Iran, Tehran, Iran
- Department of Mycobacteriology and Pulmonary Research, Pasteur Institute of Iran, Tehran, Iran
| | - Milad Parchami
- Swedish Centre for Resource Recovery, University of Borås, 50190Borås, Sweden
| | - Mohsen Parchami
- Swedish Centre for Resource Recovery, University of Borås, 50190Borås, Sweden
| | - Sunita Varjani
- Paryavaran Bhavan, Gujarat Pollution Control Board, Gandhinagar, Gujarat, India
| | - Samir Kumar Khanal
- Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, Hawaii, USA
| | - Jonathan Wong
- Department of Biology, Institute of Bioresource and Agriculture and, Hong Kong Baptist University, Hong Kong
| | - Mukesh Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Taicheng Road 3#, Yangling, Shaanxi, 712100, China
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19
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Wang Y, Mairinger W, Raj SJ, Yakubu H, Siesel C, Green J, Durry S, Joseph G, Rahman M, Amin N, Hassan MZ, Wicken J, Dourng D, Larbi E, Adomako LAB, Senayah AK, Doe B, Buamah R, Tetteh-Nortey JNN, Kang G, Karthikeyan A, Roy S, Brown J, Muneme B, Sene SO, Tuffuor B, Mugambe RK, Bateganya NL, Surridge T, Ndashe GM, Ndashe K, Ban R, Schrecongost A, Moe CL. Quantitative assessment of exposure to fecal contamination in urban environment across nine cities in low-income and lower-middle-income countries and a city in the United States. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 763:143007. [PMID: 34718001 DOI: 10.1016/j.scitotenv.2020.143007] [Citation(s) in RCA: 48] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2020] [Revised: 10/08/2020] [Accepted: 10/08/2020] [Indexed: 05/23/2023]
Abstract
BACKGROUND During 2014 to 2019, the SaniPath Exposure Assessment Tool, a standardized set of methods to evaluate risk of exposure to fecal contamination in the urban environment through multiple exposure pathways, was deployed in 45 neighborhoods in ten cities, including Accra and Kumasi, Ghana; Vellore, India; Maputo, Mozambique; Siem Reap, Cambodia; Atlanta, United States; Dhaka, Bangladesh; Lusaka, Zambia; Kampala, Uganda; Dakar, Senegal. OBJECTIVE Assess and compare risk of exposure to fecal contamination via multiple pathways in ten cities. METHODS In total, 4053 environmental samples, 4586 household surveys, 128 community surveys, and 124 school surveys were collected. E. coli concentrations were measured in environmental samples as an indicator of fecal contamination magnitude. Bayesian methods were used to estimate the distributions of fecal contamination concentration and contact frequency. Exposure to fecal contamination was estimated by the Monte Carlo method. The contamination levels of ten environmental compartments, frequency of contact with those compartments for adults and children, and estimated exposure to fecal contamination through any of the surveyed environmental pathways were compared across cities and neighborhoods. RESULTS Distribution of fecal contamination in the environment and human contact behavior varied by city. Universally, food pathways were the most common dominant route of exposure to fecal contamination across cities in low-income and lower-middle-income countries. Risks of fecal exposure via water pathways, such as open drains, flood water, and municipal drinking water, were site-specific and often limited to smaller geographic areas (i.e., neighborhoods) instead of larger areas (i.e., cities). CONCLUSIONS Knowledge of the relative contribution to fecal exposure from multiple pathways, and the environmental contamination level and frequency of contact for those "dominant pathways" could provide guidance for Water, Sanitation, and Hygiene (WASH) programming and investments and enable local governments and municipalities to improve intervention strategies to reduce the risk of exposure to fecal contamination.
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Affiliation(s)
- Yuke Wang
- Center for Global Safe Water, Sanitation, and Hygiene, Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA.
| | - Wolfgang Mairinger
- Center for Global Safe Water, Sanitation, and Hygiene, Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA
| | - Suraja J Raj
- Center for Global Safe Water, Sanitation, and Hygiene, Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA
| | - Habib Yakubu
- Center for Global Safe Water, Sanitation, and Hygiene, Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA
| | - Casey Siesel
- Center for Global Safe Water, Sanitation, and Hygiene, Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA
| | - Jamie Green
- Center for Global Safe Water, Sanitation, and Hygiene, Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA
| | - Sarah Durry
- Center for Global Safe Water, Sanitation, and Hygiene, Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA
| | - George Joseph
- Water Global Practice, The World Bank, Washington, DC, USA
| | - Mahbubur Rahman
- Environmental Interventions Unit, Infectious Disease Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh
| | - Nuhu Amin
- Environmental Interventions Unit, Infectious Disease Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh
| | | | | | | | - Eugene Larbi
- Training Research and Networking for Development (TREND), Accra, Ghana
| | | | | | - Benjamin Doe
- Training Research and Networking for Development (TREND), Accra, Ghana
| | - Richard Buamah
- Department of Civil Engineering, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
| | | | - Gagandeep Kang
- Wellcome Research Laboratory, Christian Medical College, Vellore, India
| | - Arun Karthikeyan
- Wellcome Research Laboratory, Christian Medical College, Vellore, India
| | - Sheela Roy
- Wellcome Research Laboratory, Christian Medical College, Vellore, India
| | - Joe Brown
- School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA, USA
| | - Bacelar Muneme
- Water Supply and Mapping, WE Consult, Maputo, Mozambique
| | - Seydina O Sene
- Initiative Prospective Agricole et Rurale (IPAR), Dakar, Senegal
| | - Benedict Tuffuor
- Training Research and Networking for Development (TREND), Accra, Ghana
| | - Richard K Mugambe
- Department of Disease Control and Environmental Health, Makerere University School of Public Health, Kampala, Uganda
| | - Najib Lukooya Bateganya
- Department of Environment and Public Health, Kampala Capital City Authority, Kampala, Uganda
| | - Trevor Surridge
- Deutsche Gesellschaft für Internationale Zusammenarbeit (GIZ) GmbH, Lusaka, Zambia
| | | | - Kunda Ndashe
- Department of Environmental Health, Faculty of Health Science, Lusaka Apex Medical University, Lusaka, Zambia
| | - Radu Ban
- Bill & Melinda Gates Foundation, Seattle, WA, USA
| | | | - Christine L Moe
- Center for Global Safe Water, Sanitation, and Hygiene, Hubert Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, GA, USA
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20
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Enhanced ex-situ biomethanation of hydrogen and carbon dioxide in a trickling filter bed reactor. Biochem Eng J 2022. [DOI: 10.1016/j.bej.2021.108311] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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21
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Braga Nan L, Trably E, Santa-Catalina G, Bernet N, Delgenes JP, Escudie R. Microbial community redundance in biomethanation systems lead to faster recovery of methane production rates after starvation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 804:150073. [PMID: 34517312 DOI: 10.1016/j.scitotenv.2021.150073] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Revised: 08/11/2021] [Accepted: 08/28/2021] [Indexed: 06/13/2023]
Abstract
The Power-to-Gas concept corresponds to the use of the electric energy surplus to produce H2 by water electrolysis, that can be further converted to methane by biomethanation. However, the fluctuant production of renewable energy sources can lead to discontinuous H2 injections into the reactors, that may interfere with the adaptation of the microbial community to high H2 partial pressures. In this study, the response of the microbial community to H2 and organic feed starvation was evaluated in in-situ and ex-situ biomethanation. The fed-batch reactors were fed with acetate or glucose and H2, and one or four weeks of starvation periods were investigated. Methane productivity was mostly affected by the four-week starvation period. However, both in-situ and ex-situ biomethanation reactors recovered their methane production rate after starvation within approximately one-week of normal operation, while the anaerobic digestion (AD) reactors did not recover their performances even after 3 weeks of normal operation. The recovery failure of the AD reactors was probably related to a slow growth of the syntrophic and methanogen microorganisms, that led to a VFA accumulation. On the contrary, the faster recovery of both biomethanation reactors was related to the replacement of Methanoculleus sp. by Methanobacterium sp., restoring the methane production in the in-situ and ex-situ biomethanation reactors. This study has shown that biomethanation processes can respond favourably to the intermittent H2 addition without compromising their CH4 production performance.
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Affiliation(s)
- L Braga Nan
- INRAE, Univ. Montpellier, LBE, 102 AV. des Etangs, 11100 Narbonne, France
| | - E Trably
- INRAE, Univ. Montpellier, LBE, 102 AV. des Etangs, 11100 Narbonne, France
| | - G Santa-Catalina
- INRAE, Univ. Montpellier, LBE, 102 AV. des Etangs, 11100 Narbonne, France
| | - N Bernet
- INRAE, Univ. Montpellier, LBE, 102 AV. des Etangs, 11100 Narbonne, France
| | - J-P Delgenes
- INRAE, Univ. Montpellier, LBE, 102 AV. des Etangs, 11100 Narbonne, France
| | - R Escudie
- INRAE, Univ. Montpellier, LBE, 102 AV. des Etangs, 11100 Narbonne, France.
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22
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A biogeographic 16S rRNA survey of bacterial communities of ureolytic biomineralization from California public restrooms. PLoS One 2022; 17:e0262425. [PMID: 35030221 PMCID: PMC8759634 DOI: 10.1371/journal.pone.0262425] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Accepted: 12/24/2021] [Indexed: 11/29/2022] Open
Abstract
In this study, we examined the total bacterial community associated with ureolytic biomineralization from urine drainage systems. Biomineral samples were obtained from 11 California Department of Transportation public restrooms fitted with waterless, low-flow, or conventional urinals in 2019. Following high throughput 16S rRNA Illumina sequences processed using the DADA2 pipeline, the microbial diversity assessment of 169 biomineral and urine samples resulted in 3,869 reference sequences aggregated as 598 operational taxonomic units (OTUs). Using PERMANOVA testing, we found strong, significant differences between biomineral samples grouped by intrasystem sampling location and urinal type. Biomineral microbial community profiles and alpha diversities differed significantly when controlling for sampling season. Observational statistics revealed that biomineral samples obtained from waterless urinals contained the largest ureC/16S gene copy ratios and were the least diverse urinal type in terms of Shannon indices. Waterless urinal biomineral samples were largely dominated by the Bacilli class (86.1%) compared to low-flow (41.3%) and conventional samples (20.5%), and had the fewest genera that account for less than 2.5% relative abundance per OTU. Our findings are useful for future microbial ecology studies of urine source-separation technologies, as we have established a comparative basis using a large sample size and study area.
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Kumar A, Verma LM, Sharma S, Singh N. Overview on agricultural potentials of biogas slurry (BGS): applications, challenges, and solutions. BIOMASS CONVERSION AND BIOREFINERY 2022; 13:1-41. [PMID: 35004124 PMCID: PMC8725965 DOI: 10.1007/s13399-021-02215-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 11/29/2021] [Accepted: 12/07/2021] [Indexed: 06/01/2023]
Abstract
The residual slurry obtained from the anaerobic digestion (AD) of biogas feed substrates such as livestock dung is known as BGS. BGS is a rich source of nutrients and bioactive compounds having an important role in establishing diverse microbial communities, accelerating nutrient use efficiency, and promoting overall soil and plant health management. However, challenges such as lower C/N transformation rates, ammonia volatilization, high pH, and bulkiness limit their extensive applications. Here we review the strategies of BGS valorization through microbial and organomineral amendments. Such cohesive approaches can serve dual purposes viz. green organic inputs for sustainable agriculture practices and value addition of biomass waste. The literature survey has been conducted to identify the knowledge gaps and critically analyze the latest technological interventions to upgrade the BGS for potential applications in agriculture fields. The major points are as follows: (1) Bio/nanotechnology-inspired approaches could serve as a constructive platform for integrating BGS with other organic materials to exploit microbial diversity dynamics through multi-substrate interactions. (2) Advancements in next-generation sequencing (NGS) pave an ideal pathway to study the complex microflora and translate the potential information into bioprospecting of BGS to ameliorate existing bio-fertilizer formulations. (3) Nanoparticles (NPs) have the potential to establish a link between syntrophic bacteria and methanogens through direct interspecies electron transfer and thereby contribute towards improved efficiency of AD. (4) Developments in techniques of nutrient recovery from the BGS facilities' negative GHGs emissions and energy-efficient models for nitrogen removal. (5) Possibilities of formulating low-cost substrates for mass-multiplication of beneficial microbes, bioprospecting of such microbes to produce bioactive compounds of anti-phytopathogenic activities, and developing BGS-inspired biofertilizer formulations integrating NPs, microbial inoculants, and deoiled seed cakes have been examined.
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Affiliation(s)
- Ajay Kumar
- Centre for Rural Development and Technology, Indian Institute of Technology Delhi, Hauz Khas, New Delhi 110016 India
- Department of Biotechnology, Mewar Institute of Management, Vasundhara, Ghaziabad, UP 201012 India
| | - Lahur Mani Verma
- Centre for Rural Development and Technology, Indian Institute of Technology Delhi, Hauz Khas, New Delhi 110016 India
| | - Satyawati Sharma
- Centre for Rural Development and Technology, Indian Institute of Technology Delhi, Hauz Khas, New Delhi 110016 India
| | - Neetu Singh
- Department of Biotechnology, Mewar Institute of Management, Vasundhara, Ghaziabad, UP 201012 India
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Wu K, Xu W, Wang C, Lu J, He X. Saponification with calcium has different impacts on anaerobic digestion of saturated/unsaturated long chain fatty acids. BIORESOURCE TECHNOLOGY 2022; 343:126134. [PMID: 34655784 DOI: 10.1016/j.biortech.2021.126134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Revised: 10/07/2021] [Accepted: 10/11/2021] [Indexed: 06/13/2023]
Abstract
Little is known about the influence of the saturation degree of long chain fatty acids (LCFAs) on the bio-methane potential of calcium-LCFAs salts. In this study, palmitic acid and oleic acid were chosen as the model compounds to investigate the impact of saponification between calcium and saturated/unsaturated LCFAs on the methane recovery from LCFAs in anaerobic digestion. A 2.2-fold enhancement of methane yield was obtained due to the formation of calcium palmitate, which was primarily attributed to the enhanced bio-aggregation and significant change of microbial community. However, saponification between calcium and oleic acid decreased the methane recovery from oleic acid digestion. Only partial saponification with excess oleic acid led to 4% increment of methane production. The low bio-accessibility of calcium oleate and the little change of microbial community may be responsible for the small difference of methane recovery due to the formation of calcium oleate.
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Affiliation(s)
- Kun Wu
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, PR China
| | - Weijia Xu
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, PR China
| | - Chun Wang
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, PR China
| | - Jian Lu
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS); Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai Shandong 264003, PR China
| | - Xia He
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, PR China.
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Banerjee A, Show BK, Chaudhury S, Balachandran S. Biological pretreatment for enhancement of biogas production. COST EFFECTIVE TECHNOLOGIES FOR SOLID WASTE AND WASTEWATER TREATMENT 2022:101-114. [DOI: 10.1016/b978-0-12-822933-0.00020-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/19/2023]
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Kim NK, Lee SH, Kim Y, Park HD. Current understanding and perspectives in anaerobic digestion based on genome-resolved metagenomic approaches. BIORESOURCE TECHNOLOGY 2022; 344:126350. [PMID: 34813924 DOI: 10.1016/j.biortech.2021.126350] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 11/09/2021] [Accepted: 11/11/2021] [Indexed: 06/13/2023]
Abstract
Anaerobic digestion (AD) is a technique that can be used to treat high concentrations of various organic wastes using a consortium of functionally diverse microorganisms under anaerobic conditions. Methane gas, a beneficial by-product of the AD process, is a renewable energy source that can replace fossil fuels following purification. However, detailed functional roles and metabolic interactions between microbial populations involved in organic waste removal and methanogenesis are yet to be known. Recent metagenomic approaches based on advanced high-throughput sequencing techniques have enabled the exploration of holistic microbial taxonomy and functionality of complex microbial populations involved in the AD process. Gene-centric and genome-centric analyses based on metagenome-assembled genomes are a platform that can be used to study the composition of microbial communities and their roles during AD. This review looks at how these up-to-date metagenomic analyses can be applied to promote our understanding and improved the development of the AD process.
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Affiliation(s)
- Na-Kyung Kim
- School of Civil, Environmental and Architectural Engineering, Korea University, Seoul, South Korea
| | - Sang-Hoon Lee
- School of Civil, Environmental and Architectural Engineering, Korea University, Seoul, South Korea
| | - Yonghoon Kim
- School of Civil, Environmental and Architectural Engineering, Korea University, Seoul, South Korea
| | - Hee-Deung Park
- School of Civil, Environmental and Architectural Engineering, Korea University, Seoul, South Korea.
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Jiang Q, Xin Y, Jiang Y, Huang L, Shen P. Improving the efficiency of anaerobic digestion of Molasses alcohol wastewater using Cassava alcohol wastewater as a mixed feedstock. BIORESOURCE TECHNOLOGY 2022; 344:126179. [PMID: 34695583 DOI: 10.1016/j.biortech.2021.126179] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2021] [Revised: 10/17/2021] [Accepted: 10/18/2021] [Indexed: 06/13/2023]
Abstract
Cassava alcohol wastewater (CAW) was utilized as a mixed feedstock to explore whether the addition of CAW could improve the anaerobic digestion of Molasses alcohol wastewater (MAW). The result showed that the rate of removal of the soluble chemical oxygen demand in the M treatment mixed with CAW was 70.13 ± 0.16%, which was significantly higher than that of the C treatment (only MAW), which was 61.23 ± 0.36%. Co-digestion in the M treatment resulted in higher methane production, achieving 23.89% increase in methane yield compared to C treatment. The addition of CAW helps to alleviate the accumulation of volatile fatty acids (397.06 ± 141.82 mg·L-1), enhance the stability of system and promote the establishment of stable and active microbial communities. Microbial community structure analysis indicated that hydrolytic bacteria such as Bacteroidetes, Firmicutes, and Proteobacteria, and acetoclastic methanogens, including Methanosaeta and Methanosarcina were more abundant in the co-digests.
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Affiliation(s)
- Qiong Jiang
- College of Life Science and Technology, Guangxi University, State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi Research Center for Microbial and Enzyme Engineering Technology, Nanning 530004, Guangxi, China
| | - Yuan Xin
- College of Life Science and Technology, Guangxi University, State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi Research Center for Microbial and Enzyme Engineering Technology, Nanning 530004, Guangxi, China
| | - Yanbo Jiang
- Guangxi Beitou Environmental Protection & Water Group Co., Ltd, Nanning 530029, Guangxi, China
| | - Luodong Huang
- College of Life Science and Technology, Guangxi University, State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi Research Center for Microbial and Enzyme Engineering Technology, Nanning 530004, Guangxi, China
| | - Peihong Shen
- College of Life Science and Technology, Guangxi University, State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi Research Center for Microbial and Enzyme Engineering Technology, Nanning 530004, Guangxi, China.
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Tsigkou K, Terpou A, Treu L, Kougias PG, Kornaros M. Thermophilic anaerobic digestion of olive mill wastewater in an upflow packed bed reactor: Evaluation of 16S rRNA amplicon sequencing for microbial analysis. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 301:113853. [PMID: 34624575 DOI: 10.1016/j.jenvman.2021.113853] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Revised: 09/21/2021] [Accepted: 09/24/2021] [Indexed: 06/13/2023]
Abstract
Olive mill wastewater, a by-product of olive oil production after the operation of three-phase decanters, was used in a thermophilic anaerobic digester targeting efficient bioconversion of its organic load into biogas. An active anaerobic inoculum originating from a mesophilic reactor, was acclimatized under thermophilic conditions and was filled into a high-rate upflow packed bed reactor. Its performance was tested towards the treatment efficacy of olive mill wastewater under thermophilic conditions reaching the minimum hydraulic retention time of 4.2 d with promising results. As analysis of the microbial communities is considered to be the key for the development of anaerobic digestion optimization techniques, the present work focused on characterizing the microbial community and its variation during the reactor's runs, via 16S rRNA amplicon sequencing. Identification of new microbial species and taxonomic groups determination is of paramount importance as these representatives determine the bioprocess outcome. The current study results may contribute to further olive mill wastewater exploitation as a potential source for efficient biogas production.
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Affiliation(s)
- Konstantina Tsigkou
- Department of Chemical Engineering, University of Patras, 1 Karatheodori Str., University Campus, 26504, Patras, Greece
| | - Antonia Terpou
- Department of Agricultural Development, Agri-food, and Natural Resources Management, School of Agricultural Development, Nutrition & Sustainability, National and Kapodistrian University of Athens, GR-34400, Psachna, Greece
| | - Laura Treu
- Department of Biology, University of Padova, 35131, Padova, Italy
| | - Panagiotis G Kougias
- Soil and Water Resources Institute, Hellenic Agricultural Organisation DEMETER, 57001, Thermi, Thessaloniki, Greece
| | - Michael Kornaros
- Department of Chemical Engineering, University of Patras, 1 Karatheodori Str., University Campus, 26504, Patras, Greece.
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Dargode PS, More PP, Gore SS, Asodekar BR, Sharma MB, Lali AM. Microbial consortia adaptation to substrate changes in anaerobic digestion. Prep Biochem Biotechnol 2021; 52:924-936. [PMID: 34895061 DOI: 10.1080/10826068.2021.2009859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
Renewable natural gas (RNG) produced from anaerobic digestion (AD) of agricultural residues is emerging a serious biofuel alternative. Complex nature of lignocellulosic biomass residues coupled with complex biochemical transformations involving a large spectrum of microbial communities make anaerobic digestion of biomass difficult to understand and control. The present work aims at studying adaptation of microbial consortia in AD to substrates changes and correlating these to biogas generation. The double edged study deals with (a) using a common starting culture inoculum on different fractions of pretreated lignocellulosic biomass (LBM) fractions; and (b) using different starter inocula for gas generation from simple glucose substrate. Taxonomic analysis using 16S amplicon sequencing is shown to highlight changes in microbial community structure and predominance, majorly in hydrolytic bacterial populations. Observed variations in the rate of digestion with different starter inocula could be related to differences in microbial community structure and relative abundance. Results with different treated biomass fractions as substrates indicated that AD performance could be related to abundance of substrate-specific microbial communities. The work is a step to a deeper understanding of AD processes that may lead to better control and operation of AD for super-scale production of RNG from biomass feedstocks.
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Affiliation(s)
- Priyanka S Dargode
- DBT-ICT Centre for Energy Biosciences, Institute of Chemical Technology (Formerly UDCT), Mumbai, India
| | - Pooja P More
- DBT-ICT Centre for Energy Biosciences, Institute of Chemical Technology (Formerly UDCT), Mumbai, India
| | - Suhas S Gore
- DBT-ICT Centre for Energy Biosciences, Institute of Chemical Technology (Formerly UDCT), Mumbai, India
| | - Bhupal R Asodekar
- DBT-ICT Centre for Energy Biosciences, Institute of Chemical Technology (Formerly UDCT), Mumbai, India
| | - Manju B Sharma
- DBT-ICT Centre for Energy Biosciences, Institute of Chemical Technology (Formerly UDCT), Mumbai, India
| | - Arvind M Lali
- Institute of Chemical Technology (Formerly UDCT), Mumbai, India
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30
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Porath‐Krause A, Strauss AT, Henning JA, Seabloom EW, Borer ET. Pitfalls and pointers: An accessible guide to marker gene amplicon sequencing in ecological applications. Methods Ecol Evol 2021. [DOI: 10.1111/2041-210x.13764] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Anita Porath‐Krause
- Department of Ecology, Evolution, and Behavior University of Minnesota St. Paul MN USA
| | - Alexander T. Strauss
- Department of Ecology, Evolution, and Behavior University of Minnesota St. Paul MN USA
| | - Jeremiah A. Henning
- Department of Ecology, Evolution, and Behavior University of Minnesota St. Paul MN USA
| | - Eric W. Seabloom
- Department of Ecology, Evolution, and Behavior University of Minnesota St. Paul MN USA
| | - Elizabeth T. Borer
- Department of Ecology, Evolution, and Behavior University of Minnesota St. Paul MN USA
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31
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Rahman MS, Hoque MN, Puspo JA, Islam MR, Das N, Siddique MA, Hossain MA, Sultana M. Microbiome signature and diversity regulates the level of energy production under anaerobic condition. Sci Rep 2021; 11:19777. [PMID: 34611238 PMCID: PMC8492712 DOI: 10.1038/s41598-021-99104-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Accepted: 09/13/2021] [Indexed: 02/08/2023] Open
Abstract
The microbiome of the anaerobic digester (AD) regulates the level of energy production. To assess the microbiome diversity and composition in different stages of anaerobic digestion, we collected 16 samples from the AD of cow dung (CD) origin. The samples were categorized into four groups (Group-I, Group-II, Group-III and Group-IV) based on the level of energy production (CH4%), and sequenced through whole metagenome sequencing (WMS). Group-I (n = 2) belonged to initial time of energy production whereas Group-II (n = 5), Group-III (n = 5), and Group-IV (n = 4) had 21-34%, 47-58% and 71-74% of CH4, respectively. The physicochemical analysis revealed that level of energy production (CH4%) had significant positive correlation with digester pH (r = 0.92, p < 0.001), O2 level (%) (r = 0.54, p < 0.05), and environmental temperature (°C) (r = 0.57, p < 0.05). The WMS data mapped to 2800 distinct bacterial, archaeal and viral genomes through PathoScope (PS) and MG-RAST (MR) analyses. We detected 768, 1421, 1819 and 1774 bacterial strains in Group-I, Group-II, Group-III and Group-IV, respectively through PS analysis which were represented by Firmicutes, Bacteroidetes, Proteobacteria, Actinobacteria, Spirochaetes and Fibrobacteres phyla (> 93.0% of the total abundances). Simultaneously, 343 archaeal strains were detected, of which 95.90% strains shared across four metagenomes. We identified 43 dominant species including 31 bacterial and 12 archaeal species in AD microbiomes, of which only archaea showed positive correlation with digester pH, CH4 concentration, pressure and temperature (Spearman correlation; r > 0.6, p < 0.01). The indicator species analysis showed that the species Methanosarcina vacuolate, Dehalococcoides mccartyi, Methanosarcina sp. Kolksee and Methanosarcina barkeri were highly specific for energy production. The correlation network analysis showed that different strains of Euryarcheota and Firmicutes phyla exhibited significant correlation (p = 0.021, Kruskal-Wallis test; with a cutoff of 1.0) with the highest level (74.1%) of energy production (Group-IV). In addition, top CH4 producing microbiomes showed increased genomic functional activities related to one carbon and biotin metabolism, oxidative stress, proteolytic pathways, membrane-type-1-matrix-metalloproteinase (MT1-MMP) pericellular network, acetyl-CoA production, motility and chemotaxis. Importantly, the physicochemical properties of the AD including pH, CH4 concentration (%), pressure, temperature and environmental temperature were found to be positively correlated with these genomic functional potentials and distribution of ARGs and metal resistance pathways (Spearman correlation; r > 0.5, p < 0.01). This study reveals distinct changes in composition and diversity of the AD microbiomes including different indicator species, and their genomic features that are highly specific for energy production.
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Affiliation(s)
- M. Shaminur Rahman
- grid.8198.80000 0001 1498 6059Department of Microbiology, University of Dhaka, Dhaka, 1000 Bangladesh
| | - M. Nazmul Hoque
- grid.8198.80000 0001 1498 6059Department of Microbiology, University of Dhaka, Dhaka, 1000 Bangladesh ,grid.443108.a0000 0000 8550 5526Department of Gynecology, Obstetrics and Reproductive Health, Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur, 1706 Bangladesh
| | - Joynob Akter Puspo
- grid.8198.80000 0001 1498 6059Department of Microbiology, University of Dhaka, Dhaka, 1000 Bangladesh
| | - M. Rafiul Islam
- grid.8198.80000 0001 1498 6059Department of Microbiology, University of Dhaka, Dhaka, 1000 Bangladesh
| | - Niloy Das
- grid.8198.80000 0001 1498 6059Department of Microbiology, University of Dhaka, Dhaka, 1000 Bangladesh ,Surge Engineering (www.surgeengineering.com), Dhaka, 1205 Bangladesh
| | - Mohammad Anwar Siddique
- grid.8198.80000 0001 1498 6059Department of Microbiology, University of Dhaka, Dhaka, 1000 Bangladesh
| | - M. Anwar Hossain
- grid.8198.80000 0001 1498 6059Department of Microbiology, University of Dhaka, Dhaka, 1000 Bangladesh ,Present Address: Jashore University of Science and Technology, Jashore, 7408 Bangladesh
| | - Munawar Sultana
- grid.8198.80000 0001 1498 6059Department of Microbiology, University of Dhaka, Dhaka, 1000 Bangladesh
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Chai A, Wong YS, Ong SA, Aminah Lutpi N, Sam ST, Kee WC, Ng HH. Haldane-Andrews substrate inhibition kinetics for pilot scale thermophilic anaerobic degradation of sugarcane vinasse. BIORESOURCE TECHNOLOGY 2021; 336:125319. [PMID: 34049168 DOI: 10.1016/j.biortech.2021.125319] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Revised: 05/14/2021] [Accepted: 05/17/2021] [Indexed: 05/25/2023]
Abstract
A pilot scale anaerobic degradation of sugarcane vinasse was carried out at various hydraulic retention time (HRT) in the Anaerobic Suspended Growth Closed Bioreactor (ASGCB) under thermophilic temperature. The performance and kinetics were evaluated through the Haldane-Andrews model to investigate the substrate inhibition potential of sugarcane vinasse. All parameters show great performance between HRT 35 and 25 days: chemical oxygen demand (COD) reduction efficiency (81.6 to 86.8%), volatile fatty acids (VFA) reduction efficiency (92.4 to 98.5%), maximum methane yield (70%) and maximum biogas production (19.35 L/day). Furthermore, steady state values from various HRT were obtained in the kinetic evaluation for: rXmax (1.20 /day), Ks (19.95 gCOD/L), Ki (7.00 gCOD/L) and [Formula: see text] (0.33 LCH4/gCOD reduction). This study shows that anaerobic degradation of sugarcane vinasse through ASGCB could perform well at high HRT and provides a low degree of substrate inhibition as compared to existing studies from literature.
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Affiliation(s)
- Audrey Chai
- Faculty of Civil Engineering Technology, Universiti Malaysia Perlis, 02600 Arau, Perlis, Malaysia
| | - Yee-Shian Wong
- Faculty of Civil Engineering Technology, Universiti Malaysia Perlis, 02600 Arau, Perlis, Malaysia; Water Research and Environmental Sustainability Growth, Centre of Excellence (WAREG), Universiti Malaysia Perlis (UniMAP), Perlis, Malaysia.
| | - Soon-An Ong
- Faculty of Civil Engineering Technology, Universiti Malaysia Perlis, 02600 Arau, Perlis, Malaysia; Water Research and Environmental Sustainability Growth, Centre of Excellence (WAREG), Universiti Malaysia Perlis (UniMAP), Perlis, Malaysia
| | - Nabilah Aminah Lutpi
- Faculty of Civil Engineering Technology, Universiti Malaysia Perlis, 02600 Arau, Perlis, Malaysia; Water Research and Environmental Sustainability Growth, Centre of Excellence (WAREG), Universiti Malaysia Perlis (UniMAP), Perlis, Malaysia
| | - Sung-Ting Sam
- Faculty of Chemical Engineering Technology, Universiti Malaysia Perlis, 02600 Arau, Perlis, Malaysia
| | - Wei-Chin Kee
- Faculty of Civil Engineering Technology, Universiti Malaysia Perlis, 02600 Arau, Perlis, Malaysia
| | - Hock-Hoo Ng
- Fermpro Sdn Bhd, Lot 2 Kawasan Perindustrian Chuping, 02450 Kangar, Perlis, Malaysia
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Janesch E, Pereira J, Neubauer P, Junne S. Phase Separation in Anaerobic Digestion: A Potential for Easier Process Combination? FRONTIERS IN CHEMICAL ENGINEERING 2021. [DOI: 10.3389/fceng.2021.711971] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The flexibilization of bioenergy production has the potential to counteract partly other fluctuating renewable energy sources (such as wind and solar power). As a weather-independent energy source, anaerobic digestion (AD) can offer on-demand energy supply through biogas production. Separation of the stages in anaerobic digestion represents a promising strategy for the flexibilization of the fermentative part of biogas production. Segregation in two reactor systems facilitates monitoring and control of the provision of educts to the second methanogenic stage, thus controlling biogas production. Two-stage operation has proven to reach similar or even higher methane yields and biogas purities than single-stage operation in many different fields of application. It furthermore allows methanation of green hydrogen and an easier combination of material and energy use of many biogenic raw and residual biomass sources. A lot of research has been conducted in recent years regarding the process phase separation in multi-stage AD operation, which includes more than two stages. Reliable monitoring tools, coupled with effluent recirculation, bioaugmentation and simulation have the potential to overcome the current drawbacks of a sophisticated and unstable operation. This review aims to summarize recent developments, new perspectives for coupling processes for energy and material use and a system integration of AD for power-to-gas applications. Thereby, cell physiological and engineering aspects as well as the basic economic feasibility are discussed. As conclusion, monitoring and control concepts as well as suitable separation technologies and finally the data basis for techno-economic and ecologic assessments have to be improved.
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Cazaudehore G, Monlau F, Gassie C, Lallement A, Guyoneaud R. Methane production and active microbial communities during anaerobic digestion of three commercial biodegradable coffee capsules under mesophilic and thermophilic conditions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 784:146972. [PMID: 33892320 DOI: 10.1016/j.scitotenv.2021.146972] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Revised: 03/15/2021] [Accepted: 04/01/2021] [Indexed: 06/12/2023]
Abstract
Biodegradable plastics market is increasing these last decades, including for coffee capsules. Anaerobic digestion, as a potential end-of-life scenario for plastic waste, has to be investigated. For this purpose, mesophilic (38 °C) and thermophilic (58 °C) anaerobic digestion tests on three coffee capsules made up with biodegradable plastic (Beanarella®, Launay® or Tintoretto®) and spent coffee (control) were compared by their methane production and the microbial communities active during the process. Mesophilic biodegradation of the capsules was slow and did not reach completion after 100 days, methane production ranged between 67 and 127 NL (CH4) kg-1 (VS). Thermophilic anaerobic digestion resulted in a better biodegradation and reached completion around 100 days, methane productions were between 257 and 294 NL (CH4) kg-1 (VS). The microbial populations from the reactors fed with plastics versus spent coffee grounds were significantly different, under both the mesophilic and the thermophilic conditions. However, the different biodegradable plastics only had a small impact on the main microbial community composition at a similar operational temperature and sampling time. Interestingly, the genus Tepidimicrobium was identified as a potential key microorganisms involved in the thermophilic conversion of biodegradable plastic in methane.
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Affiliation(s)
- G Cazaudehore
- APESA, Pôle Valorisation, Cap Ecologia, 64230 Lescar, France; Université de Pau et des Pays de l'Adour/E2S UPPA/CNRS, IPREM UMR5254, Institut des Sciences Analytiques et de Physicochimie pour l'Environnement et les Matériaux, Chimie et Microbiologie de l'Environnement, 64000 Pau, France
| | - F Monlau
- APESA, Pôle Valorisation, Cap Ecologia, 64230 Lescar, France
| | - C Gassie
- Université de Pau et des Pays de l'Adour/E2S UPPA/CNRS, IPREM UMR5254, Institut des Sciences Analytiques et de Physicochimie pour l'Environnement et les Matériaux, Chimie et Microbiologie de l'Environnement, 64000 Pau, France
| | - A Lallement
- APESA, Pôle Valorisation, Cap Ecologia, 64230 Lescar, France
| | - R Guyoneaud
- Université de Pau et des Pays de l'Adour/E2S UPPA/CNRS, IPREM UMR5254, Institut des Sciences Analytiques et de Physicochimie pour l'Environnement et les Matériaux, Chimie et Microbiologie de l'Environnement, 64000 Pau, France.
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Kakuk B, Bagi Z, Rákhely G, Maróti G, Dudits D, Kovács KL. Methane production from green and woody biomass using short rotation willow genotypes for bioenergy generation. BIORESOURCE TECHNOLOGY 2021; 333:125223. [PMID: 33940504 DOI: 10.1016/j.biortech.2021.125223] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Revised: 04/21/2021] [Accepted: 04/22/2021] [Indexed: 06/12/2023]
Abstract
Short rotation plantations of willow genotypes, harvested in vegetative growth phases, were tested as an alternative biomass for methane production. The substrate characteristics, maximal methane yields (K) and highest methane production rates (µmax) were determined. Leaves and stems from diploid Energo (EN) and tetraploid (PP) plants, harvested in June were superior methane sources to woody tissue. This could be related to the lower lignin contents in green willow. Fermentation of pooled biomasses from tetraploid genotypes harvested in June-August was more efficient than methane production from diploid tissues. Microbial community analyses by 16S rRNA genes showed a dominance of the order Clostridiales. In field study, based on Energo plantation, the maximum in green biomass accumulation was in early month 9 of the vegetation period. A theoretical calculation showed similar or better energy potential per unit area for willow than in the case of maize silage. This study encourages the use of green willow biomass as feedstock in biomethanation processes due to its relatively low production costs and uncomplicated agricultural practice.
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Affiliation(s)
- Balázs Kakuk
- Department of Medical Biology, University of Szeged, Hungary; Department of Biotechnology, University of Szeged, Hungary
| | - Zoltán Bagi
- Department of Biotechnology, University of Szeged, Hungary
| | - Gábor Rákhely
- Department of Biotechnology, University of Szeged, Hungary; Environmental Research Institute, University of Szeged, Szeged, Hungary
| | - Gergely Maróti
- Institute of Plant Biology, Biological Research Center, Szeged, Hungary
| | - Dénes Dudits
- Institute of Plant Biology, Biological Research Center, Szeged, Hungary.
| | - Kornél L Kovács
- Department of Biotechnology, University of Szeged, Hungary; Department of Oral Biology and Experimental Dental Research, University of Szeged, Szeged, Hungary.
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Enhancement of Biogas Production via Co-Digestion of Wastewater Treatment Sewage Sludge and Brewery Spent Grain: Physicochemical Characterization and Microbial Community. SUSTAINABILITY 2021. [DOI: 10.3390/su13158225] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The present study intends to evaluate a synergy towards enhanced biogas production by co-digesting municipal sewage sludge (SS) with brewery spent grain (BSG). To execute this, physicochemical and metagenomics analysis was conducted on the sewage sludge substrate. The automatic methane potential test system II (AMPTS II) biochemical methane potential (BMP) batch setup was operated at 35 ± 5 °C, pH range of 6.5–7.5 for 30 days’ digestion time on AMPTS II and 150 days on semi-continuous setup, where the organic loading rate (OLR) was guided by pH and the volatile fatty acids to total alkalinity (VFA/TA) ratio. Metagenomics analysis revealed that Proteobacteria was the most abundant phyla, consisting of hydrolytic and fermentative bacteria. The archaea community of hydrogenotrophic methanogen genus was enriched by methanogens. The highest BMP was obtained with co-digestion of SS and BSG, and 9.65 g/kg of VS. This not only increased biogas production by 104% but also accelerated the biodegradation of organic matters. However, a significant reduction in the biogas yield, from 10.23 NL/day to 2.02 NL/day, was observed in a semi-continuous process. As such, it can be concluded that different species in different types of sludge can synergistically enhance the production of biogas. However, the operating conditions should be optimized and monitored at all times. The anaerobic co-digestion of SS and BSG might be considered as a cost-effective solution that could contribute to the energy self-efficiency of wastewater treatment works (WWTWs) and sustainable waste management. It is recommended to upscale co-digestion of the feed for the pilot biogas plant. This will also go a long way in curtailing and minimizing the impacts of sludge disposal in the environment.
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Gaspari M, Treu L, Zhu X, Palù M, Angelidaki I, Campanaro S, Kougias PG. Microbial dynamics in biogas digesters treating lipid-rich substrates via genome-centric metagenomics. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 778:146296. [PMID: 33714811 DOI: 10.1016/j.scitotenv.2021.146296] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2021] [Revised: 02/24/2021] [Accepted: 03/02/2021] [Indexed: 06/12/2023]
Abstract
Co-digestion with lipid-rich substrates is a likely strategy in biogas plants, due to their high energy content. However, the process stability is vulnerable to inhibition due to the sudden increase of fatty-acid concentration. Therefore, techniques that promote the adaptation of the microorganisms to the presence of lipids have been proposed. In this frame, the initial hypothesis of the work was that a gradual change in feedstock composition would enable us to elucidate the microbial organisation as a result of deterministic (i.e. chemical composition of influent) and stochastic (e.g. interspecies interactions) factors. This study investigates the response of the biogas microbiome to gradual increment of the Organic Loading Rate by supplementing the influent feedstock with Na-Oleate. The results showed that as a response to the feedstock shifts three clusters describing microbes behaviours were formed. The dynamics and the functional role of the formed microbial clusters were unveiled, providing explanations for their abundance and behavior. Process monitoring indicated that the reactors responded immediately to lipid supplementation and they managed to stabilize their performance in a short period of time. The dominance of Candidatus Methanoculleus thermohydrogenotrophicum in the biogas reactors fed exclusively with cattle manure indicated that the predominant methanogenic pathway was hydrogenotrophic. Additionally, the abundance of this methanogen was further enhanced upon lipid supplementation and its growth was supported by syntrophic bacteria capable to metabolize fatty acids. However, with the shift back to the original feedstock (i.e. solely cattle manure), the microbial dynamicity significantly altered with a remarkable increment in the abundance of a propionate degrader affiliated to the order of Bacteroidales, which became the predominant microorganism of the consortium.
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Affiliation(s)
- Maria Gaspari
- Department of Hydraulics, Soil Science and Agricultural Engineering, Faculty of Agriculture, Aristotle University of Thessaloniki, GR-54124 Thessaloniki, Greece; Soil and Water Resources Institute, Hellenic Agricultural Organisation Demeter, Thermi, Thessaloniki 57001, Greece
| | - Laura Treu
- Department of Biology, University of Padova, 35131 Padova, Italy
| | - Xinyu Zhu
- Department of Environmental Engineering, Technical University of Denmark, Kgs. Lyngby DK-2800, Denmark
| | - Matteo Palù
- Department of Biology, University of Padova, 35131 Padova, Italy
| | - Irini Angelidaki
- Department of Environmental Engineering, Technical University of Denmark, Kgs. Lyngby DK-2800, Denmark
| | | | - Panagiotis G Kougias
- Soil and Water Resources Institute, Hellenic Agricultural Organisation Demeter, Thermi, Thessaloniki 57001, Greece
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Kakuk B, Wirth R, Maróti G, Szuhaj M, Rakhely G, Laczi K, Kovács KL, Bagi Z. Early response of methanogenic archaea to H 2 as evaluated by metagenomics and metatranscriptomics. Microb Cell Fact 2021; 20:127. [PMID: 34217274 PMCID: PMC8254922 DOI: 10.1186/s12934-021-01618-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2021] [Accepted: 06/24/2021] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The molecular machinery of the complex microbiological cell factory of biomethane production is not fully understood. One of the process control elements is the regulatory role of hydrogen (H2). Reduction of carbon dioxide (CO2) by H2 is rate limiting factor in methanogenesis, but the community intends to keep H2 concentration low in order to maintain the redox balance of the overall system. H2 metabolism in methanogens becomes increasingly important in the Power-to-Gas renewable energy conversion and storage technologies. RESULTS The early response of the mixed mesophilic microbial community to H2 gas injection was investigated with the goal of uncovering the first responses of the microbial community in the CH4 formation and CO2 mitigation Power-to-Gas process. The overall microbial composition changes, following a 10 min excessive bubbling of H2 through the reactor, was investigated via metagenome and metatranscriptome sequencing. The overall composition and taxonomic abundance of the biogas producing anaerobic community did not change appreciably 2 hours after the H2 treatment, indicating that this time period was too short to display differences in the proliferation of the members of the microbial community. There was, however, a substantial increase in the expression of genes related to hydrogenotrophic methanogenesis of certain groups of Archaea. As an early response to H2 exposure the activity of the hydrogenotrophic methanogenesis in the genus Methanoculleus was upregulated but the hydrogenotrophic pathway in genus Methanosarcina was downregulated. The RT-qPCR data corroborated the metatranscriptomic RESULTS: H2 injection also altered the metabolism of a number of microbes belonging in the kingdom Bacteria. Many Bacteria possess the enzyme sets for the Wood-Ljungdahl pathway. These and the homoacetogens are partners for syntrophic community interactions between the distinct kingdoms of Archaea and Bacteria. CONCLUSIONS External H2 regulates the functional activity of certain Bacteria and Archaea. The syntrophic cross-kingdom interactions in H2 metabolism are important for the efficient operation of the Power-to-Gas process. Therefore, mixed communities are recommended for the large scale Power-to-Gas process rather than single hydrogenotrophic methanogen strains. Fast and reproducible response from the microbial community can be exploited in turn-off and turn-on of the Power-to-Gas microbial cell factories.
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Affiliation(s)
- Balázs Kakuk
- Institute of Medical Biology, University of Szeged, Szeged, Hungary
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Roland Wirth
- Department of Biotechnology, University of Szeged, Szeged, Hungary
- Institute of Plant Biology, Biological Research Center, Szeged, Hungary
| | - Gergely Maróti
- Institute of Plant Biology, Biological Research Center, Szeged, Hungary
| | - Márk Szuhaj
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Gábor Rakhely
- Department of Biotechnology, University of Szeged, Szeged, Hungary
- Institute of Biophysics, Biological Research Center, Szeged, Hungary
| | - Krisztián Laczi
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Kornél L Kovács
- Department of Biotechnology, University of Szeged, Szeged, Hungary.
- Department of Oral Biology and Experimental Dental Research, University of Szeged, Szeged, Hungary.
| | - Zoltán Bagi
- Department of Biotechnology, University of Szeged, Szeged, Hungary.
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He X, Guo Z, Lu J, Zhang P. Carbon-based conductive materials accelerated methane production in anaerobic digestion of waste fat, oil and grease. BIORESOURCE TECHNOLOGY 2021; 329:124871. [PMID: 33631454 DOI: 10.1016/j.biortech.2021.124871] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2021] [Revised: 02/10/2021] [Accepted: 02/12/2021] [Indexed: 06/12/2023]
Abstract
Little is known about the effect of carbon-based conductive material (CM) addition on the anaerobic co-digestion of fat, oil and grease (FOG) and waste activated sludge (WAS). In this study, three types of carbon-based CMs (nano-graphite (NG), granular activated carbon (GAC), and carbon cloth (CC)) and nine dosages were evaluated for their influences on co-digestion performance. The best dosage was achieved at 0.2 g/L NG, 10 g/L GAC, and 1 cm × 5 cm CC with 13-22% incremental methane production, 25-55% increased VS removal and 28-32% enhanced COD conversion efficiency compared to the control. The highest total amount of bacteria/archaea was found in CC (1 cm × 5 cm), followed by GAC at 10 g/L and NG at 0.2 g/L, which were all higher than those of the control. Microbial community analysis revealed that direct interspecies electron transfer (DIET)-mediated syntrophic acetate oxidation (SAO) enabling faster acetate conversion might be responsible for the enhancement of methane production.
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Affiliation(s)
- Xia He
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, China
| | - Zhenyu Guo
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, China
| | - Jian Lu
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, Shandong 264003, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, 7 Nanhai Road, Qingdao 266071, China.
| | - Ping Zhang
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi 541006, China
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Hashemi S, Hashemi SE, Lien KM, Lamb JJ. Molecular Microbial Community Analysis as an Analysis Tool for Optimal Biogas Production. Microorganisms 2021; 9:microorganisms9061162. [PMID: 34071282 PMCID: PMC8226781 DOI: 10.3390/microorganisms9061162] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2021] [Revised: 05/17/2021] [Accepted: 05/26/2021] [Indexed: 11/16/2022] Open
Abstract
The microbial diversity in anaerobic digestion (AD) is important because it affects process robustness. High-throughput sequencing offers high-resolution data regarding the microbial diversity and robustness of biological systems including AD; however, to understand the dynamics of microbial processes, knowing the microbial diversity is not adequate alone. Advanced meta-omic techniques have been established to determine the activity and interactions among organisms in biological processes like AD. Results of these methods can be used to identify biomarkers for AD states. This can aid a better understanding of system dynamics and be applied to producing comprehensive models for AD. The paper provides valuable knowledge regarding the possibility of integration of molecular methods in AD. Although meta-genomic methods are not suitable for on-line use due to long operating time and high costs, they provide extensive insight into the microbial phylogeny in AD. Meta-proteomics can also be explored in the demonstration projects for failure prediction. However, for these methods to be fully realised in AD, a biomarker database needs to be developed.
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Affiliation(s)
- Seyedbehnam Hashemi
- Department of Energy and Process Engineering & Enersense, Norwegian University of Science and Technology (NTNU), 7034 Trondheim, Norway; (S.H.); (S.E.H.); (K.M.L.)
| | - Sayed Ebrahim Hashemi
- Department of Energy and Process Engineering & Enersense, Norwegian University of Science and Technology (NTNU), 7034 Trondheim, Norway; (S.H.); (S.E.H.); (K.M.L.)
| | - Kristian M. Lien
- Department of Energy and Process Engineering & Enersense, Norwegian University of Science and Technology (NTNU), 7034 Trondheim, Norway; (S.H.); (S.E.H.); (K.M.L.)
| | - Jacob J. Lamb
- Department of Energy and Process Engineering & Enersense, Norwegian University of Science and Technology (NTNU), 7034 Trondheim, Norway; (S.H.); (S.E.H.); (K.M.L.)
- Department of Electronic Systems, Norwegian University of Science and Technology (NTNU), 7034 Trondheim, Norway
- Correspondence:
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Knisz J, Shetty P, Wirth R, Maróti G, Karches T, Dalkó I, Bálint M, Vadkerti E, Bíró T. Genome-level insights into the operation of an on-site biological wastewater treatment unit reveal the importance of storage time. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 766:144425. [PMID: 33418265 DOI: 10.1016/j.scitotenv.2020.144425] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Revised: 12/07/2020] [Accepted: 12/08/2020] [Indexed: 06/12/2023]
Abstract
On-site wastewater treatment systems are gaining popularity in areas where centralized wastewater treatment is not available. In the current case study a domestic activated sludge system was investigated, where treated effluent was stored in a short-term (1 week turn-over time) and a long-term (over 2-3 months) storage tank and was then used for irrigation. This design provided a unique opportunity to assess the chemical and microbial changes of the effluent upon storage. Long-term storage greatly improved both the chemical quality and the degradation efficiency of most organic micropollutants examined, including petroleum hydrocarbons and the pesticide diethyltoluamide. Taxonomic profile of the core microbiome of the effluent was also influenced upon storage. Relative abundance values of the members of Azoarcus and Thauera genera, which are important in degrading polycyclic aromatic hydrocarbons compounds, clearly indicated the biodegrading activity of these microbes across samples. The abundance of xenobiotics degradation functions correlated with the observed organic micropollutant degradation values indicating efficient microbial decomposition of these contaminants. Functions related to infectious diseases also had the highest abundance in the short-term storage tank corresponding well with the relative abundance of indicator organisms and implying to the significance of storage time in the elimination of pathogens. Based on these results, small, on-site wastewater treatment systems could benefit from long-term storage of wastewater effluent.
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Affiliation(s)
- J Knisz
- Faculty of Water Sciences, National University of Public Service, Bajcsy-Zsilinszky u. 12-14., 6500 Baja, Hungary
| | - P Shetty
- Institute of Plant Biology, Biological Research Center, Temesvári krt. 62, 6726 Szeged, Hungary
| | - R Wirth
- Institute of Plant Biology, Biological Research Center, Temesvári krt. 62, 6726 Szeged, Hungary
| | - G Maróti
- Faculty of Water Sciences, National University of Public Service, Bajcsy-Zsilinszky u. 12-14., 6500 Baja, Hungary; Institute of Plant Biology, Biological Research Center, Temesvári krt. 62, 6726 Szeged, Hungary
| | - T Karches
- Faculty of Water Sciences, National University of Public Service, Bajcsy-Zsilinszky u. 12-14., 6500 Baja, Hungary
| | - I Dalkó
- Faculty of Water Sciences, National University of Public Service, Bajcsy-Zsilinszky u. 12-14., 6500 Baja, Hungary
| | - M Bálint
- Bálint Analitika Ltd, Fehérvári út 144, 1116 Budapest, Hungary
| | - E Vadkerti
- Faculty of Water Sciences, National University of Public Service, Bajcsy-Zsilinszky u. 12-14., 6500 Baja, Hungary
| | - T Bíró
- Faculty of Water Sciences, National University of Public Service, Bajcsy-Zsilinszky u. 12-14., 6500 Baja, Hungary.
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Szilágyi Á, Bodor A, Tolvai N, Kovács KL, Bodai L, Wirth R, Bagi Z, Szepesi Á, Markó V, Kakuk B, Bounedjoum N, Rákhely G. A comparative analysis of biogas production from tomato bio-waste in mesophilic batch and continuous anaerobic digestion systems. PLoS One 2021; 16:e0248654. [PMID: 33730081 PMCID: PMC7968646 DOI: 10.1371/journal.pone.0248654] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 03/02/2021] [Indexed: 12/22/2022] Open
Abstract
Annually, agricultural activity produces an enormous amount of plant biomass by-product. Many studies have reported the biomethane potential of agro-industrial wastes, but only a few studies have investigated applying the substrates in both batch and continuous mode. Tomato is one of the most popular vegetables globally; its processing releases a substantial amount of by-product, such as stems and leaves. This study examined the BMP of tomato plant (Solanum lycopersicum Mill. L. cv. Alfred) waste. A comparative test revealed that the BMPs of corn stover, tomato waste,and their combination were approximately the same, around 280 mL methane/g Volatile Solid. In contrast, the relative biogas production decreased in the presence of tomato waste in a continuous mesophilic anaerobic digestion system; the daily biogas productions were 860 ± 80, 290 ± 50, and 570 ± 70 mL biogas/gVolatile Solid/day in the case of corn stover, tomato waste, and their mixture, respectively. The methane content of biogas was around 46–48%. The fermentation parameters of the continuous AD experiments were optimal in all cases; thus, TW might have an inhibitory effect on the microbial community. Tomato plant materials contain e.g. flavonoids, glycoalkaloids (such as tomatine and tomatidine), etc. known as antimicrobial and antifungal agents. The negative effect of tomatine on the biogas yield was confirmed in batch fermentation experiments. Metagenomic analysis revealed that the tomato plant waste caused significant rearrangements in the microbial communities in the continuously operated reactors. The results demonstrated that tomato waste could be a good mono-substrate in batch fermentations or a co-substrate with corn stover in a proper ratio in continuous anaerobic fermentations for biogas production. These results also point to the importance of running long-term continuous fermentations to test the suitability of a novel biomass substrate for industrial biogas production.
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Affiliation(s)
- Árpád Szilágyi
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Attila Bodor
- Department of Biotechnology, University of Szeged, Szeged, Hungary
- Institute of Environmental Sciences, University of Szeged, Szeged, Hungary
- Institute of Biophysics, Biological Research Centre, Szeged, Hungary
| | - Norbert Tolvai
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Kornél L. Kovács
- Department of Biotechnology, University of Szeged, Szeged, Hungary
- Institute of Biophysics, Biological Research Centre, Szeged, Hungary
- Department of Oral Biology and Experimental Dental Research, University of Szeged, Szeged, Hungary
| | - László Bodai
- Department of Biochemistry and Molecular Biology, University of Szeged, Szeged, Hungary
| | - Roland Wirth
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Zoltán Bagi
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Ágnes Szepesi
- Department of Plant Biology, University of Szeged, Szeged, Hungary
| | - Viktória Markó
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Balázs Kakuk
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Naila Bounedjoum
- Department of Biotechnology, University of Szeged, Szeged, Hungary
| | - Gábor Rákhely
- Department of Biotechnology, University of Szeged, Szeged, Hungary
- Institute of Environmental Sciences, University of Szeged, Szeged, Hungary
- Institute of Biophysics, Biological Research Centre, Szeged, Hungary
- * E-mail:
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Wongfaed N, Kongjan P, Suksong W, Prasertsan P, O-Thong S. Strategies for recovery of imbalanced full-scale biogas reactor feeding with palm oil mill effluent. PeerJ 2021; 9:e10592. [PMID: 33505799 PMCID: PMC7797170 DOI: 10.7717/peerj.10592] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Accepted: 11/26/2020] [Indexed: 11/24/2022] Open
Abstract
Background Full-scale biogas production from palm oil mill effluent (POME) was inhibited by low pH and highly volatile fatty acid (VFA) accumulation. Three strategies were investigated for recovering the anaerobic digestion (AD) imbalance on biogas production, namely the dilution method (tap water vs. biogas effluent), pH adjustment method (NaOH, NaHCO3, Ca(OH)2, oil palm ash), and bioaugmentation (active methane-producing sludge) method. The highly economical and feasible method was selected and validated in a full-scale application. Results The inhibited sludge from a full-scale biogas reactor could be recovered within 30–36 days by employing various strategies. Dilution of the inhibited sludge with biogas effluent at a ratio of 8:2, pH adjustment with 0.14% w/v NaOH, and 8.0% w/v oil palm ash were considered to be more economically feasible than other strategies tested (dilution with tap water, or pH adjustment with 0.50% w/v Ca(OH)2, or 1.25% NaHCO3 and bioaugmentation) with a recovery time of 30–36 days. The recovered biogas reactor exhibited a 35–83% higher methane yield than self-recovery, with a significantly increased hydrolysis constant (kH) and specific methanogenic activity (SMA). The population of Clostridium sp., Bacillus sp., and Methanosarcina sp. increased in the recovered sludge. The imbalanced full-scale hybrid cover lagoon reactor was recovered within 15 days by dilution with biogas effluent at a ratio of 8:2 and a better result than the lab-scale test (36 days). Conclusion Dilution of the inhibited sludge with biogas effluent could recover the imbalance of the full-scale POME-biogas reactor with economically feasible and high biogas production performance.
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Affiliation(s)
- Nantharat Wongfaed
- Biotechnology Program, Faculty of Science, Thaksin University, Phatthalung, Thailand
| | - Prawit Kongjan
- Department of Science, Faculty of Science and Technology, Prince of Songkla University, Pattani, Thailand
| | - Wantanasak Suksong
- School of Bioresources and Technology, King Mongkut's University of Technology, Thonburi, Bangkok, Thailand
| | - Poonsuk Prasertsan
- Research and Development Office, Prince of Songkla University, Songkhla, Thailand
| | - Sompong O-Thong
- Biotechnology Program, Faculty of Science, Thaksin University, Phatthalung, Thailand.,International College, Thaksin University, Songkhla, Thailand
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Muturi SM, Muthui LW, Njogu PM, Onguso JM, Wachira FN, Opiyo SO, Pelle R. Metagenomics survey unravels diversity of biogas microbiomes with potential to enhance productivity in Kenya. PLoS One 2021; 16:e0244755. [PMID: 33395690 PMCID: PMC7781671 DOI: 10.1371/journal.pone.0244755] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Accepted: 12/16/2020] [Indexed: 12/27/2022] Open
Abstract
The obstacle to optimal utilization of biogas technology is poor understanding of biogas microbiomes diversities over a wide geographical coverage. We performed random shotgun sequencing on twelve environmental samples. Randomized complete block design was utilized to assign the twelve treatments to four blocks, within eastern and central regions of Kenya. We obtained 42 million paired-end reads that were annotated against sixteen reference databases using two ENVO ontologies, prior to β-diversity studies. We identified 37 phyla, 65 classes and 132 orders. Bacteria dominated and comprised 28 phyla, 42 classes and 92 orders, conveying substrate's versatility in the treatments. Though, Fungi and Archaea comprised 5 phyla, the Fungi were richer; suggesting the importance of hydrolysis and fermentation in biogas production. High β-diversity within the taxa was largely linked to communities' metabolic capabilities. Clostridiales and Bacteroidales, the most prevalent guilds, metabolize organic macromolecules. The identified Cytophagales, Alteromonadales, Flavobacteriales, Fusobacteriales, Deferribacterales, Elusimicrobiales, Chlamydiales, Synergistales to mention but few, also catabolize macromolecules into smaller substrates to conserve energy. Furthermore, δ-Proteobacteria, Gloeobacteria and Clostridia affiliates syntrophically regulate PH2 and reduce metal to provide reducing equivalents. Methanomicrobiales and other Methanomicrobia species were the most prevalence Archaea, converting formate, CO2(g), acetate and methylated substrates into CH4(g). Thermococci, Thermoplasmata and Thermoprotei were among the sulfur and other metal reducing Archaea that contributed to redox balancing and other metabolism within treatments. Eukaryotes, mainly fungi were the least abundant guild, comprising largely Ascomycota and Basidiomycota species. Chytridiomycetes, Blastocladiomycetes and Mortierellomycetes were among the rare species, suggesting their metabolic and substrates limitations. Generally, we observed that environmental and treatment perturbations influenced communities' abundance, β-diversity and reactor performance largely through stochastic effect. Understanding diversity of biogas microbiomes over wide environmental variables and its' productivity provided insights into better management strategies that ameliorate biochemical limitations to effective biogas production.
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Affiliation(s)
- Samuel Mwangangi Muturi
- Department of Biological Sciences, University of Eldoret, Eldoret, Kenya
- Institute for Bioteschnology Research, Jomo Kenyatta University of Agriculture and Technology, Juja, Kenya
| | - Lucy Wangui Muthui
- Biosciences Eastern and Central Africa—International Livestock Research Institute (BecA-ILRI) Hub, Nairobi, Kenya
| | - Paul Mwangi Njogu
- Institute for Energy and Environmental Technology, Jomo Kenyatta University of Agriculture and Technology, Juja, Kenya
| | - Justus Mong’are Onguso
- Institute for Bioteschnology Research, Jomo Kenyatta University of Agriculture and Technology, Juja, Kenya
| | | | - Stephen Obol Opiyo
- OARDC, Molecular and Cellular Imaging Center-Columbus, Ohio State University, Columbus, Ohio, United States of America
- The University of Sacread Heart, Gulu, Uganda
| | - Roger Pelle
- Biosciences Eastern and Central Africa—International Livestock Research Institute (BecA-ILRI) Hub, Nairobi, Kenya
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45
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Temperature and Inoculum Origin Influence the Performance of Ex-Situ Biological Hydrogen Methanation. Molecules 2020; 25:molecules25235665. [PMID: 33271799 PMCID: PMC7730501 DOI: 10.3390/molecules25235665] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Revised: 11/27/2020] [Accepted: 11/29/2020] [Indexed: 11/16/2022] Open
Abstract
The conversion of H2 into methane can be carried out by microorganisms in a process so-called biomethanation. In ex-situ biomethanation H2 and CO2 gas are exogenous to the system. One of the main limitations of the biomethanation process is the low gas-liquid transfer rate and solubility of H2 which are strongly influenced by the temperature. Hydrogenotrophic methanogens that are responsible for the biomethanation reaction are also very sensitive to temperature variations. The aim of this work was to evaluate the impact of temperature on batch biomethanation process in mixed culture. The performances of mesophilic and thermophilic inocula were assessed at 4 temperatures (24, 35, 55 and 65 °C). A negative impact of the low temperature (24 °C) was observed on microbial kinetics. Although methane production rate was higher at 55 and 65 °C (respectively 290 ± 55 and 309 ± 109 mL CH4/L.day for the mesophilic inoculum) than at 24 and 35 °C (respectively 156 ± 41 and 253 ± 51 mL CH4/L.day), the instability of the system substantially increased, likely because of a strong dominance of only Methanothermobacter species. Considering the maximal methane production rates and their stability all along the experiments, an optimal temperature range of 35 °C or 55 °C is recommended to operate ex-situ biomethanation process.
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Beraud-Martínez LK, Gómez-Gil B, Franco-Nava MÁ, Almazán-Rueda P, Betancourt-Lozano M. A metagenomic assessment of microbial communities in anaerobic bioreactors and sediments: Taxonomic and functional relationships. Anaerobe 2020; 68:102296. [PMID: 33207267 DOI: 10.1016/j.anaerobe.2020.102296] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2020] [Revised: 10/20/2020] [Accepted: 11/11/2020] [Indexed: 02/04/2023]
Abstract
The present study used metagenomic sequencing, metagenome assembly and physical-chemical analysis to describe taxonomically and functionally 3 anaerobic bioreactors treating manure (LI), brewery (BR) and cornmeal (CO) wastes, and an anaerobic estuarine sediment (ES). Proteobacteria, Firmicutes, Euryarchaeota and Bacteroidetes were the most abundant Phyla in all metagenomes. A bacteria/archaea ratio of 3.4 was found in the industrial full-scale anaerobic bioreactors BR and CO, while ratios greater than 10 were found for LI and ES. Canonical correspondence analysis showed that environmental variables such as chemical oxygen demand, lipid content, and ammonium nitrogen influenced the ordination of taxonomic groups. Mesotoga prima was linked to high-temperature conditions, particularly in the BR bioreactor, along with the presence of heat shock proteins genes. Likewise, the hydrogenotrophic methanogen, Methanoregula formicica, was associated with high ammonium concentration in LI bioreactor. The interactions of microbes with specific methanogenic pathways were identified using Clusters of Orthologous Groups (COG) functions, while metagenome-assembled genomes (MAGs) further confirmed relationships between taxa and functions. Our results provide valuable information to understand microbial processes in anaerobic environments.
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Affiliation(s)
- Liov Karel Beraud-Martínez
- Centro de Investigación en Alimentación y Desarrollo (CIAD), A. C. Unit for Aquaculture, Avenida Sábalo-Cerritos SS/n, Mazatlán, Sinaloa, 82112, Mexico
| | - Bruno Gómez-Gil
- Centro de Investigación en Alimentación y Desarrollo (CIAD), A. C. Unit for Aquaculture, Avenida Sábalo-Cerritos SS/n, Mazatlán, Sinaloa, 82112, Mexico
| | - Miguel Ángel Franco-Nava
- Tecnológico Nacional de México, Campus Mazatlán. Calle Corsario 1 No. 203 Col. Urías, A.P. 757, Mazatlán, Sinaloa, 82070, Mexico
| | - Pablo Almazán-Rueda
- Centro de Investigación en Alimentación y Desarrollo (CIAD), A. C. Unit for Aquaculture, Avenida Sábalo-Cerritos SS/n, Mazatlán, Sinaloa, 82112, Mexico
| | - Miguel Betancourt-Lozano
- Centro de Investigación en Alimentación y Desarrollo (CIAD), A. C. Unit for Aquaculture, Avenida Sábalo-Cerritos SS/n, Mazatlán, Sinaloa, 82112, Mexico.
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47
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Ziganshina EE, Belostotskiy DE, Bulynina SS, Ziganshin AM. Effect of magnetite on anaerobic digestion of distillers grains and beet pulp: Operation of reactors and microbial community dynamics. J Biosci Bioeng 2020; 131:290-298. [PMID: 33172764 DOI: 10.1016/j.jbiosc.2020.10.003] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Revised: 10/08/2020] [Accepted: 10/09/2020] [Indexed: 10/23/2022]
Abstract
It has been previously shown that magnetite (Fe3O4) nanoparticles stimulate the anaerobic digestion process in several anaerobic reactors. Here we evaluate the effect of magnetite nanoparticles on the efficiency of anaerobic digestion of distillers grains with solubles and sugar beet pulp in mesophilic batch experiments. The addition of magnetite nanopowder had a positive effect on the anaerobic digestion process. CH4 was produced faster in the presence of 50 mg of Fe3O4 per 1 g of added total solids than from treatments without addition of Fe3O4. These results demonstrate that the addition of magnetite enhances the methanogenic decomposition of organic acids. Microbial community structure and dynamics were investigated based on bacterial and archaeal 16S rRNA genes, as well as mcrA genes encoding the methyl-CoM reductase. Depending on the reactor, Bacteroides, midas_1138, Petrimonas, unclassified Rikenellaceae (class Bacteroidia), Ruminiclostridium, Proteiniclasticum, Herbinix, and Intestinibacter (class Clostridia) were the main representatives of the bacterial communities. The archaeal communities in well-performed anaerobic reactors were mainly represented by representatives of the genera Methanosarcina and Methanobacterium. Based on our findings, Fe3O4 nanoparticles, when used properly, will improve biomethane production.
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Affiliation(s)
- Elvira E Ziganshina
- Department of Microbiology, Kazan (Volga Region) Federal University, Kazan 420008, Republic of Tatarstan, Russia
| | - Dmitry E Belostotskiy
- Department of Microbiology, Kazan (Volga Region) Federal University, Kazan 420008, Republic of Tatarstan, Russia
| | - Svetlana S Bulynina
- Department of Microbiology, Kazan (Volga Region) Federal University, Kazan 420008, Republic of Tatarstan, Russia
| | - Ayrat M Ziganshin
- Department of Microbiology, Kazan (Volga Region) Federal University, Kazan 420008, Republic of Tatarstan, Russia.
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48
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Influence of Granular Activated Carbon on Anaerobic Co-Digestion of Sugar Beet Pulp and Distillers Grains with Solubles. Processes (Basel) 2020. [DOI: 10.3390/pr8101226] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Anaerobic digestion is an important technology to receive energy from various types of biomass. In this work, the impact of granular activated carbon (GAC) on the mesophilic anaerobic co-digestion of sugar beet pulp and distillers grains was investigated. After a short period, anaerobic reactors began to produce biomethane and were ready for completion within 19–24 days. The addition of GAC to reactors (5–10 g L−1) significantly enhanced the methane production rate and consumption of produced volatile fatty acids. Thus, the maximum methane production rate increased by 13.7% in the presence of GAC (5 g L−1). Bacterial and archaeal community structure and dynamics were investigated, based on 16S rRNA genes analysis. The abundant classes of bacteria in GAC-free and GAC-containing reactors were Clostridia, Bacteroidia, Actinobacteria, and Synergistia. Methanogenic communities were mainly represented by the genera Methanosarcina, Methanoculleus, Methanothrix, and Methanomassiliicoccus in GAC-free and GAC-containing reactors. Our results indicate that the addition of granular activated carbon at appropriate dosages has a positive effect on anaerobic co-digestion of by-products of the processing of sugar beet and ethanol distillation process.
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49
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Hao J, de Los Reyes Iii FL, He X. Fat, oil, and grease (FOG) deposits yield higher methane than FOG in anaerobic co-digestion with waste activated sludge. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2020; 268:110708. [PMID: 32510442 DOI: 10.1016/j.jenvman.2020.110708] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2019] [Revised: 04/21/2020] [Accepted: 05/04/2020] [Indexed: 06/11/2023]
Abstract
The formation of fat, oil, and grease (FOG) deposits in sewers is a global challenge for the maintenance of sewer collection systems. Tons of FOG deposits (FDs) are removed from sewer systems every year and present an opportunity for increased methane production via anaerobic co-digestion with waste activated sludge (WAS) at water resource recovery facilities with existing anaerobic digesters. We hypothesized that FDs have higher biomethane potential than that of FOG (e.g., FOG collected in grease interceptors), because of the reduction of inhibition of long chain fatty acids due to saponification. In this study, substantially enhanced methane production was found in anaerobic co-digestion of WAS with FDs within the substrate to inoculum (S/I) ratio range of 0.25-1.2, and the maximum ultimate methane production (685.7 ± 24.1 mL/gVSadded, at S/I = 0.5) was 4.0 times higher than in the control (with WAS only) after 42 days of incubation. Although the lag phase period was longer in FD co-digestion (S/I = 0.5) than in FOG co-digestion (S/I = 0.5) under the same organic loading (gVS) and two times the COD loading, the daily methane production rate became higher after Day 15 in FD co-digestion. Significantly higher cumulative methane production (10.2%, p < 0.05) was obtained in FD co-digestion than in FOG co-digestion after 42-days. Microbial community analysis revealed higher levels of Geobacter in FD co-digestion, possibly suggesting a role for direct interspecies electron transfer (DIET) between Methanosaeta and Geobacter. This work provides fundamental insights supporting anaerobic co-digestion of FDs with WAS, demonstrating the advantages of FDs compared to FOG as co-substrate for enhanced biomethane recovery.
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Affiliation(s)
- Jiahou Hao
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi, 541006, China
| | - Francis L de Los Reyes Iii
- Department of Civil, Construction, and Environmental Engineering, North Carolina State University, Raleigh, NC, 27695, USA
| | - Xia He
- College of Environmental Science and Engineering, Guilin University of Technology, Guangxi, 541006, China.
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50
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Blumer-Schuette SE. Insights into Thermophilic Plant Biomass Hydrolysis from Caldicellulosiruptor Systems Biology. Microorganisms 2020; 8:E385. [PMID: 32164310 PMCID: PMC7142884 DOI: 10.3390/microorganisms8030385] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2020] [Revised: 03/06/2020] [Accepted: 03/07/2020] [Indexed: 11/16/2022] Open
Abstract
Plant polysaccharides continue to serve as a promising feedstock for bioproduct fermentation. However, the recalcitrant nature of plant biomass requires certain key enzymes, including cellobiohydrolases, for efficient solubilization of polysaccharides. Thermostable carbohydrate-active enzymes are sought for their stability and tolerance to other process parameters. Plant biomass degrading microbes found in biotopes like geothermally heated water sources, compost piles, and thermophilic digesters are a common source of thermostable enzymes. While traditional thermophilic enzyme discovery first focused on microbe isolation followed by functional characterization, metagenomic sequences are negating the initial need for species isolation. Here, we summarize the current state of knowledge about the extremely thermophilic genus Caldicellulosiruptor, including genomic and metagenomic analyses in addition to recent breakthroughs in enzymology and genetic manipulation of the genus. Ten years after completing the first Caldicellulosiruptor genome sequence, the tools required for systems biology of this non-model environmental microorganism are in place.
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