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Rafei R, Osman M, Kassem II, Dabboussi F, Weill FX, Hamze M. Spotlight on the epidemiology and antimicrobial susceptibility profiles of Vibrio species in the MENA region, 2000-2023. Future Microbiol 2024:1-21. [PMID: 39229784 DOI: 10.1080/17460913.2024.2392460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2024] [Accepted: 08/12/2024] [Indexed: 09/05/2024] Open
Abstract
Recent cholera outbreaks in many countries in the Middle East and North Africa (MENA) region have raised public health concerns and focused attention on the genus Vibrio. However, the epidemiology of Vibrio species in humans, water, and seafood is often anecdotal in this region. In this review, we screened the literature and provided a comprehensive assessment of the distribution and antibiotic resistance properties of Vibrio species in different clinical and environmental samples in the region. This review will contribute to understanding closely the real burden of Vibrio species and the spread of antibiotic-resistant strains in the MENA region. The overall objective is to engage epidemiologists, sanitarians and public health stakeholders to address this problem under the One-health ethos.
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Affiliation(s)
- Rayane Rafei
- Laboratoire Microbiologie, Santé et Environnement (LMSE), Doctoral School of Sciences & Technology, Faculty of Public Health, Lebanese University, Tripoli, 1300, Lebanon
| | - Marwan Osman
- Department of Neurosurgery, Yale University School of Medicine, New Haven, CT 06510, USA
| | - Issmat I Kassem
- Center for Food Safety, Department of Food Science & Technology, University of Georgia, 1109 Experiment Street, Griffin, GA 30223-1797, USA
| | - Fouad Dabboussi
- Laboratoire Microbiologie, Santé et Environnement (LMSE), Doctoral School of Sciences & Technology, Faculty of Public Health, Lebanese University, Tripoli, 1300, Lebanon
| | - François-Xavier Weill
- Institut Pasteur, Université Paris Cité, Unité des Bactéries pathogènes entériques, Centre National de Référence des vibrions et du choléra, Paris, F-75015, France
| | - Monzer Hamze
- Laboratoire Microbiologie, Santé et Environnement (LMSE), Doctoral School of Sciences & Technology, Faculty of Public Health, Lebanese University, Tripoli, 1300, Lebanon
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2
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Yibar A, Saticioglu IB, Ajmi N, Duman M. Molecular Characterization and Antibacterial Resistance Determination of Escherichia coli Isolated from Fresh Raw Mussels and Ready-to-Eat Stuffed Mussels: A Major Public Health Concern. Pathogens 2024; 13:532. [PMID: 39057759 PMCID: PMC11279604 DOI: 10.3390/pathogens13070532] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Revised: 06/06/2024] [Accepted: 06/21/2024] [Indexed: 07/28/2024] Open
Abstract
Our study focused exclusively on analyzing Escherichia coli (E. coli) contamination in fresh raw mussels and ready-to-eat (RTE) stuffed mussels obtained from authorized and regulated facilities. However, it is critical to recognize that such contamination represents a significant public health threat in regions where unauthorized harvesting and sales practices are prevalent. This study aimed to comprehensively assess the prevalence, molecular characteristics, and antibacterial resistance profiles of E. coli in fresh raw mussels and RTE stuffed mussels. E. coli counts in fresh raw mussel samples ranged from 1 to 2.89 log CFU/g before cooking, with a significant reduction observed post-cooking. RTE stuffed mussel samples predominantly exhibited negligible E. coli presence (<1 log CFU/g). A phylogenetic analysis revealed a dominance of phylogroup A, with variations in the distribution observed across different sampling months. Antibacterial resistance was prevalent among the E. coli isolates, notably showing resistance to ampicillin, streptomycin, and cefotaxime. Extended-spectrum β-lactamase (ESβL) production was rare, with only one positive isolate detected. A variety of antibacterial resistance genes, including tetB and sul1, were identified among the isolates. Notably, virulence factor genes associated with pathogenicity were absent. In light of these findings, it is imperative to maintain rigorous compliance with quality and safety standards at all stages of the mussel production process, encompassing harvesting, processing, cooking, and consumption. Continuous monitoring, implementation of rigorous hygiene protocols, and responsible antibacterial drug use are crucial measures in mitigating food safety risks and combating antibacterial resistance. Stakeholders, including seafood industry players, regulatory agencies, and healthcare professionals, are essential to ensure effective risk mitigation and safeguard public health in the context of seafood consumption.
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Affiliation(s)
- Artun Yibar
- Department of Food Hygiene and Technology, Faculty of Veterinary Medicine, Bursa Uludag University, Bursa 16059, Turkey;
| | - Izzet B. Saticioglu
- Department of Aquatic Animal Disease, Faculty of Veterinary Medicine, Bursa Uludag University, Bursa 16059, Turkey; (I.B.S.); (N.A.)
| | - Nihed Ajmi
- Department of Aquatic Animal Disease, Faculty of Veterinary Medicine, Bursa Uludag University, Bursa 16059, Turkey; (I.B.S.); (N.A.)
| | - Muhammed Duman
- Department of Aquatic Animal Disease, Faculty of Veterinary Medicine, Bursa Uludag University, Bursa 16059, Turkey; (I.B.S.); (N.A.)
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3
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Chahouri A, Radouane N, Yacoubi B, Moukrim A, Banaoui A. Microbiological assessment of marine and estuarine ecosystems using fecal indicator bacteria, Salmonella, Vibrio and antibiotic resistance pattern. MARINE POLLUTION BULLETIN 2022; 180:113824. [PMID: 35689939 DOI: 10.1016/j.marpolbul.2022.113824] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Revised: 05/18/2022] [Accepted: 06/02/2022] [Indexed: 06/15/2023]
Abstract
Marine and estuarine environments are often affected by microbiological contamination that adversely affects their use and severely impacts human health. To examine the influence of anthropogenic activities, this study used two different ecosystems in Agadir Bay, to compare fecal indicator bacteria (FIB) and bacterial pathogen profiles over two years. Vibrio target pathogens were detected at a high frequency (49.3%), while a low percentage (5.5%) was noted for Salmonella. Apart from those mentioned above, several other pathogenic bacteria were detected such as Cronobacter sakzakii, Pseudomonas fluorescens, and Aeromonas hydrophila. We also investigated the antimicrobial resistance of the pathogenic bacteria isolated. Salmonella strains were sensitive to all the antibiotics used, except ampicillin, amoxicillin + Ac clavulanic and chloramphenicol. And Vibrio strains were resistant to ampicillin, cephalothin, amikacin, and ciprofloxacin. This study highlights the limitations of FIB in assessing the microbiological quality and the importance of environmental surveys in understanding the distribution of pathogens.
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Affiliation(s)
- Abir Chahouri
- Aquatic System Laboratory: Marine and Continental Environment, Faculty of Sciences Agadir, Department of Biology, Ibn Zohr University, Agadir, Morocco.
| | - Nabil Radouane
- Laboratory of Functional Ecology and Environmental Engineering, Sidi Mohamed Ben Abdellah University, PO Box 2202, Route d'Imouzzer, Fez, Morocco; Department of Plant Protection, Phytopathology Unit, Ecole Nationale d'Agriculture de Meknès, BP S 40, Meknès, Morocco
| | - Bouchra Yacoubi
- Aquatic System Laboratory: Marine and Continental Environment, Faculty of Sciences Agadir, Department of Biology, Ibn Zohr University, Agadir, Morocco
| | | | - Ali Banaoui
- Aquatic System Laboratory: Marine and Continental Environment, Faculty of Sciences Agadir, Department of Biology, Ibn Zohr University, Agadir, Morocco
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4
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Mudadu A, Spanu C, Pantoja J, Dos Santos M, De Oliveira C, Salza S, Piras G, Uda M, Virgilio S, Giagnoni L, Pereira J, Tedde T. Association between Escherichia coli and Salmonella spp. food safety criteria in live bivalve molluscs from wholesale and retail markets. Food Control 2022. [DOI: 10.1016/j.foodcont.2022.108942] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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5
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Chahouri A, Yacoubi B, Moukrim A, Banaoui A. Integration assay of bacteriological risks in marine environment using salmonella spp and multimarker response in the bivalve Donax trunculus: Novel biomonitoring approach. CHEMOSPHERE 2022; 297:134149. [PMID: 35271906 DOI: 10.1016/j.chemosphere.2022.134149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Revised: 01/25/2022] [Accepted: 02/25/2022] [Indexed: 06/14/2023]
Abstract
Microbiological contamination is one of the riskiest forms of human contamination in seawater, which threaten the stability of ecosystems and human health. In this study, we study the accumulation of a pathogenic bacteria Salmonella spp; isolated from the marine environment, in the soft tissue of Donax trunculus (Mollusca, Bivalvia), a commonly used as a bioindicators species for aquatic ecosystems monitoring, under laboratory conditions during both exposure and recovery periods. These bacteria were added in seawater at three concentrations previously determined against sentinel specie at three exposure periods (24, 48 and 96 h). In a second series of experiments, exposed specimens were afterward transplanted to clean water to assess the recovery pattern. The mortality rate of bivalves was determined as biomarker of general stress. Our findings suggest that microbiological contamination by Salmonella spp was gradually incorporated into the body of D. trunculus causing a significant induction of enzymatic activity of acetylcholinesterase (AChE), Catalase (CAT), glutathione-S-transferase (GST) and malondialdehyde (MDA) levels, as a function of time and concentration. Exposure to a bacterial concentration of 5.104 bacteria/liter resulted in the mortality of more than 80% of the specimens. This study is to test the pathogenicity of Salmonella strains at concentrations close to those of the marine environment, and their effects on biomarkers, thus deducing the existence of an exponential relationship between bacterial concentrations and enzymatic response. The principal component analysis shows that the four biomarkers had similar variation with bacterial concentrations, while two groups were obtained to change following the exposure time (CAT-GST and AChE-MDA). This study provides new findings on the potential accumulation of pathogenic bacteria associated with neurotoxicity and oxidative stress in the wedge clam Donax trunculus.
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Affiliation(s)
- Abir Chahouri
- Aquatic System Laboratory: Marine and Continental Environment, Faculty of Sciences Agadir, Department of Biology, Ibn Zohr University, Agadir, Morocco.
| | - Bouchra Yacoubi
- Aquatic System Laboratory: Marine and Continental Environment, Faculty of Sciences Agadir, Department of Biology, Ibn Zohr University, Agadir, Morocco
| | | | - Ali Banaoui
- Aquatic System Laboratory: Marine and Continental Environment, Faculty of Sciences Agadir, Department of Biology, Ibn Zohr University, Agadir, Morocco
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Lozano-León A, García-Omil C, Rodríguez-Souto RR, Lamas A, Garrido-Maestu A. An Evaluation of the Pathogenic Potential, and the Antimicrobial Resistance, of Salmonella Strains Isolated from Mussels. Microorganisms 2022; 10:126. [PMID: 35056575 PMCID: PMC8777845 DOI: 10.3390/microorganisms10010126] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Revised: 12/30/2021] [Accepted: 01/05/2022] [Indexed: 11/27/2022] Open
Abstract
Salmonella spp. and antimicrobial resistant microorganisms are two of the most important health issues worldwide. In the present study, strains naturally isolated from mussels harvested in Galicia (one of the main production areas in the world), were genetically characterized attending to the presence of virulence and antimicrobial resistance genes. Additionally, the antimicrobial profile was also determined phenotypically. Strains presenting several virulence genes were isolated but lacked all the antimicrobial resistance genes analyzed. The fact that some of these strains presented multidrug resistance, highlighted the possibility of bearing different genes than those analyzed, or resistance based on completely different mechanisms. The current study highlights the importance of constant surveillance in order to improve the safety of foods.
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Affiliation(s)
- Antonio Lozano-León
- Laboratorio ASMECRUZ, Playa de Beluso s/n, 36939 Bueu, Spain; (A.L.-L.); (C.G.-O.); (R.R.R.-S.)
- Group CI8, Biomedical Research Center (CINBIO), Campus Universitario de Vigo, University of Vigo, 36310 Vigo, Spain
| | - Carlos García-Omil
- Laboratorio ASMECRUZ, Playa de Beluso s/n, 36939 Bueu, Spain; (A.L.-L.); (C.G.-O.); (R.R.R.-S.)
| | | | - Alexandre Lamas
- Department of Analytical Chemistry, Nutrition and Bromatology, University of Santiago de Compostela, 27002 Lugo, Spain;
| | - Alejandro Garrido-Maestu
- Food Quality and Safety Research Group, International Iberian Nanotechnology Laboratory, Av. Mestre José Veiga s/n, 4715-330 Braga, Portugal
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Bourouache M, Mimouni R, Ait Alla A, Hamadi F, El Boulani A, Bihadassen B, Laktib A, Moustaoui F, Aghrouch M. Occurrence and removal of intestinal parasites in two wastewater treatment plants in the south of Morocco. JOURNAL OF ENVIRONMENTAL HEALTH SCIENCE & ENGINEERING 2021; 19:1425-1434. [PMID: 34900277 PMCID: PMC8617139 DOI: 10.1007/s40201-021-00697-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2019] [Accepted: 06/21/2021] [Indexed: 06/14/2023]
Abstract
BACKGROUND Agadir city plans to reuse treated wastewater on a large scale to irrigate these green spaces. This study aims to evaluate the risk of intestinal parasites, to which human and animal populations are exposed during the reuse of treated wastewaters. METHODS Over 21 months, wastewater samples were collected in Bensergao and Mzar wastewater treatment plants, in Agadir city, southern Morocco. The occurrences and removal of intestinal parasites were inspected using the modified Bailenger method. RESULTS The biodiversity of helminths is higher than protozoa, while the protozoa cysts are more abundant and more prevalent. Generally, the highest parasitic loads were recorded during the hot season. For raw waters, the average concentration of protozoa cysts was 173.33 ± 70.81 cysts per L for Bensergao plant and 179.33 ± 129.22 cysts per L for Mzar plant. However, the helminths average concentration was 48.70 ± 39.91 eggs/larvae per L for Bensergao plant and 51.10 ± 31.76 eggs/larvae per L for Mzar plant. The purified water of the Mzar plant does not contain parasites, unlike the Bensergao plant where a small numbers of parasites were detected, included 2.33 ± 1.53 cysts per L for protozoa and 0.45 ± 0.58 eggs/larvae per L for helminths. CONCLUSIONS Considering parasitological risks, the purified waters of Bensergao plant cannot be used without risks to the public health and environment. In contrast, the purified waters and the purified waters disinfected by ultraviolet radiation from the Mzar plant can be used safely to water the green spaces of Agadir city.
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Affiliation(s)
- M. Bourouache
- Laboratory of Microbial Biotechnology and Plant Protection, Faculty of Sciences, Ibn Zohr University, Agadir, BP 8106, Morocco
| | - R. Mimouni
- Laboratory of Microbial Biotechnology and Plant Protection, Faculty of Sciences, Ibn Zohr University, Agadir, BP 8106, Morocco
| | - A. Ait Alla
- Laboratory of Microbial Biotechnology and Plant Protection, Faculty of Sciences, Ibn Zohr University, Agadir, BP 8106, Morocco
| | - F. Hamadi
- Laboratory of Microbial Biotechnology and Plant Protection, Faculty of Sciences, Ibn Zohr University, Agadir, BP 8106, Morocco
| | - A. El Boulani
- Laboratory of Microbial Biotechnology and Plant Protection, Faculty of Sciences, Ibn Zohr University, Agadir, BP 8106, Morocco
| | - B. Bihadassen
- Laboratory of Microbial Biotechnology and Plant Protection, Faculty of Sciences, Ibn Zohr University, Agadir, BP 8106, Morocco
| | - A. Laktib
- Laboratory of Microbial Biotechnology and Plant Protection, Faculty of Sciences, Ibn Zohr University, Agadir, BP 8106, Morocco
| | - F. Moustaoui
- Medical Analysis Laboratory, Hassan II Regional Hospital, Agadir, 80000 Morocco
| | - M. Aghrouch
- Medical Analysis Laboratory, Hassan II Regional Hospital, Agadir, 80000 Morocco
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Genomic population structure associated with repeated escape of Salmonella enterica ATCC14028s from the laboratory into nature. PLoS Genet 2021; 17:e1009820. [PMID: 34570761 PMCID: PMC8496778 DOI: 10.1371/journal.pgen.1009820] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2021] [Revised: 10/07/2021] [Accepted: 09/10/2021] [Indexed: 11/19/2022] Open
Abstract
Salmonella enterica serovar Typhimurium strain ATCC14028s is commercially available from multiple national type culture collections, and has been widely used since 1960 for quality control of growth media and experiments on fitness (“laboratory evolution”). ATCC14028s has been implicated in multiple cross-contaminations in the laboratory, and has also caused multiple laboratory infections and one known attempt at bioterrorism. According to hierarchical clustering of 3002 core gene sequences, ATCC14028s belongs to HierCC cluster HC20_373 in which most internal branch lengths are only one to three SNPs long. Many natural Typhimurium isolates from humans, domesticated animals and the environment also belong to HC20_373, and their core genomes are almost indistinguishable from those of laboratory strains. These natural isolates have infected humans in Ireland and Taiwan for decades, and are common in the British Isles as well as the Americas. The isolation history of some of the natural isolates confirms the conclusion that they do not represent recent contamination by the laboratory strain, and 10% carry plasmids or bacteriophages which have been acquired in nature by HGT from unrelated bacteria. We propose that ATCC14028s has repeatedly escaped from the laboratory environment into nature via laboratory accidents or infections, but the escaped micro-lineages have only a limited life span. As a result, there is a genetic gap separating HC20_373 from its closest natural relatives due to a divergence between them in the late 19th century followed by repeated extinction events of escaped HC20_373. Clades of closely related bacteria exist in nature. Individual isolates from such clades are often distinguishable by genomic sequencing because genomic sequence differences can be acquired over a few years due to neutral drift and natural selection. The evolution of laboratory strains is often largely frozen, physically due to storage conditions and genetically due to long periods of storage. Thus, laboratory strains can normally be readily distinguished from natural isolates because they show much less diversity. However, laboratory strain ATCC14028s shows modest levels of sequence diversity because it has been shipped around the world to multiple laboratories and is routinely used for analyses of laboratory evolution. Closely related natural isolates also exist, but their genetic diversity is not dramatically greater at the core genome level. Indeed, many scientists doubt that such isolates are natural, and interpret them as undetected contamination by the laboratory strain. We present data indicating that ATCC14028s has repeatedly escaped from the laboratory through inadvertent contamination of the environment, infection of technical staff and deliberate bioterrorism. The escapees survive in nature long enough that some acquire mobile genomic elements by horizontal gene transfer, but eventually they go extinct. As a result, even extensive global databases of natural isolates lack closely related isolates whose ancestors diverged from ATCC14028s within the last 100 years.
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Zahli R, Soliveri J, Abrini J, Copa-Patiño JL, Nadia A, Scheu AK, Nadia SS. Prevalence, typing and antimicrobial resistance of Salmonella isolates from commercial shellfish in the North coast of Morocco. World J Microbiol Biotechnol 2021; 37:170. [PMID: 34487261 DOI: 10.1007/s11274-021-03136-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Accepted: 08/26/2021] [Indexed: 10/20/2022]
Abstract
Salmonellosis is one of the most common foodborne illnesses in the world. The irrational use of antibiotics in medicine and in animal nutrition has greatly favored the emergence and spread of resistant strains of non-typhoid Salmonella. This study aims the determination of the prevalence of Salmonella in bivalve mollusks in Northern Morocco, as well as the molecular typing and antibiotic susceptibility testing of the strains isolated from positive samples. In total, 150 samples from shellfish composed of mussels (Mytilus galloprovincialis), clams (Callista chione and Ruditapes descussatus) and oysters (Magallana gigas). Isolated Salmonella were characterized by Molecular techniques PCR, MLST and MLVA, phylogenetically grouped by MLSA, and susceptibilities were determined for 30 antimicrobial drugs using microdilution method by the BD Phoenix Automated Microbiology System. Prevalence of Salmonella enterica subsp. enterica was 12.67%, grouped in four serovars identified as Chester, Hadar, Typhimurium and Kentucky. Five different MLST STs (sequence types) were detected, ST1954 being the most common, which was mostly found in Chester isolates. Forty-two percent of the isolates showed resistance to more than one antibiotic, especially trimethoprim, sulfa drugs, quinolones and β-lactam. There was a marked change in the serovars and antimicrobial resistance profiles of the Salmonella isolates in this study compared to those in previous studies.
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Affiliation(s)
- Rajae Zahli
- Biotechnology and Applied Microbiology Laboratory (BMA), Department of Biology, Abdelmalek Essadi University, Tétouan, Morocco.
| | - Juan Soliveri
- Department of Biomedicine and Biotechnology, Faculty of Farmacy, University of Alcalá, 28805, Madrid, Spain
| | - Jamal Abrini
- Biotechnology and Applied Microbiology Laboratory (BMA), Department of Biology, Abdelmalek Essadi University, Tétouan, Morocco
| | - José L Copa-Patiño
- Department of Biomedicine and Biotechnology, Faculty of Farmacy, University of Alcalá, 28805, Madrid, Spain
| | - Amajoud Nadia
- Regional Environmental Laboratory of the Urban Community of Tetouan, Tétouan, Morocco
| | - Ann-Karolin Scheu
- Department of Biomedicine and Biotechnology, Faculty of Farmacy, University of Alcalá, 28805, Madrid, Spain
| | - Skali Senhaji Nadia
- Biotechnology and Applied Microbiology Laboratory (BMA), Department of Biology, Abdelmalek Essadi University, Tétouan, Morocco
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10
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Marinopoulou A, Petridis D. A comparative study of the effect of different cooking methods on the quality and shucking of mussels. J FOOD PROCESS PRES 2021. [DOI: 10.1111/jfpp.15875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Anna Marinopoulou
- Food Process Engineering Laboratory Department of Food Science and Technology International Hellenic UniversityAlexandrian Campus Thessaloniki Greece
- Central Research Laboratory for the Physical and Chemical Testing of Foods Department of Food Science and Technology International Hellenic UniversityAlexandrian Campus Thessaloniki Greece
| | - Dimitris Petridis
- Central Research Laboratory for the Physical and Chemical Testing of Foods Department of Food Science and Technology International Hellenic UniversityAlexandrian Campus Thessaloniki Greece
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Achtman M, Zhou Z, Alikhan NF, Tyne W, Parkhill J, Cormican M, Chiou CS, Torpdahl M, Litrup E, Prendergast DM, Moore JE, Strain S, Kornschober C, Meinersmann R, Uesbeck A, Weill FX, Coffey A, Andrews-Polymenis H, Curtiss 3rd R, Fanning S. Genomic diversity of Salmonella enterica -The UoWUCC 10K genomes project. Wellcome Open Res 2021; 5:223. [PMID: 33614977 PMCID: PMC7869069 DOI: 10.12688/wellcomeopenres.16291.2] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/25/2021] [Indexed: 12/31/2022] Open
Abstract
Background: Most publicly available genomes of Salmonella enterica are from human disease in the US and the UK, or from domesticated animals in the US. Methods: Here we describe a historical collection of 10,000 strains isolated between 1891-2010 in 73 different countries. They encompass a broad range of sources, ranging from rivers through reptiles to the diversity of all S. enterica isolated on the island of Ireland between 2000 and 2005. Genomic DNA was isolated, and sequenced by Illumina short read sequencing. Results: The short reads are publicly available in the Short Reads Archive. They were also uploaded to EnteroBase, which assembled and annotated draft genomes. 9769 draft genomes which passed quality control were genotyped with multiple levels of multilocus sequence typing, and used to predict serovars. Genomes were assigned to hierarchical clusters on the basis of numbers of pair-wise allelic differences in core genes, which were mapped to genetic Lineages within phylogenetic trees. Conclusions: The University of Warwick/University College Cork (UoWUCC) project greatly extends the geographic sources, dates and core genomic diversity of publicly available S. enterica genomes. We illustrate these features by an overview of core genomic Lineages within 33,000 publicly available Salmonella genomes whose strains were isolated before 2011. We also present detailed examinations of HC400, HC900 and HC2000 hierarchical clusters within exemplar Lineages, including serovars Typhimurium, Enteritidis and Mbandaka. These analyses confirm the polyphyletic nature of multiple serovars while showing that discrete clusters with geographical specificity can be reliably recognized by hierarchical clustering approaches. The results also demonstrate that the genomes sequenced here provide an important counterbalance to the sampling bias which is so dominant in current genomic sequencing.
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Affiliation(s)
- Mark Achtman
- Warwick Medical School, University of Warwick, Coventry, CV4 7AL, UK
| | - Zhemin Zhou
- Warwick Medical School, University of Warwick, Coventry, CV4 7AL, UK
| | | | - William Tyne
- Warwick Medical School, University of Warwick, Coventry, CV4 7AL, UK
| | - Julian Parkhill
- Department of Veterinary Medicine, University of Cambridge, Cambridge, CB3 0ES, UK
| | - Martin Cormican
- National Salmonella, Shigella and Listeria Reference Laboratory, Galway, H91 YR71, Ireland
| | - Chien-Shun Chiou
- Central Regional Laboratory, Center for Diagnostics and Vaccine Development, Centers for Disease Control, Taichung, None, Taiwan
| | - Mia Torpdahl
- Statens Serum Institut, Copenhagen S, DK-2300, Denmark
| | - Eva Litrup
- Statens Serum Institut, Copenhagen S, DK-2300, Denmark
| | - Deirdre M. Prendergast
- Backweston complex, Department of Agriculture, Food and the Marine (DAFM), Celbridge, Co. Kildare, W23 X3PH, Ireland
| | - John E. Moore
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, BT9 7AD, UK
| | - Sam Strain
- Animal Health and Welfare NI, Dungannon, BT71 6JT, UK
| | - Christian Kornschober
- Institute for Medical Microbiology and Hygiene, Austrian Agency for Health and Food Safety (AGES), Graz, 8010, Austria
| | - Richard Meinersmann
- US National Poultry Research Center, USDA Agricultural Research Service, Athens, GA, 30605, USA
| | - Alexandra Uesbeck
- Institute for Medical Microbiology, Immunology, and Hygiene, University of Cologne, Cologne, 50935, Germany
| | - François-Xavier Weill
- Unité des bactéries pathogènes entériques, Institut Pasteur, Paris, cedex 15, France
| | - Aidan Coffey
- Cork Institute of Technology, Cork, T12P928, Ireland
| | - Helene Andrews-Polymenis
- Dept. of Microbial Pathogenesis and Immunology, College of Medicine Texas A&M University, Bryan, TX, 77807, USA
| | - Roy Curtiss 3rd
- Dept. of Infectious Diseases & Immunology, College of Veterinary Medicine, University of Florida, Gainesville, Florida, 32611, USA
| | - Séamus Fanning
- UCD-Centre for Food Safety, University College Dublin, Dublin, D04 N2E5, Ireland
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12
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Achtman M, Zhou Z, Alikhan NF, Tyne W, Parkhill J, Cormican M, Chiou CS, Torpdahl M, Litrup E, Prendergast DM, Moore JE, Strain S, Kornschober C, Meinersmann R, Uesbeck A, Weill FX, Coffey A, Andrews-Polymenis H, Curtiss 3rd R, Fanning S. Genomic diversity of Salmonella enterica -The UoWUCC 10K genomes project. Wellcome Open Res 2020; 5:223. [PMID: 33614977 PMCID: PMC7869069 DOI: 10.12688/wellcomeopenres.16291.1] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/15/2020] [Indexed: 01/25/2023] Open
Abstract
Background: Most publicly available genomes of Salmonella enterica are from human disease in the US and the UK, or from domesticated animals in the US. Methods: Here we describe a historical collection of 10,000 strains isolated between 1891-2010 in 73 different countries. They encompass a broad range of sources, ranging from rivers through reptiles to the diversity of all S. enterica isolated on the island of Ireland between 2000 and 2005. Genomic DNA was isolated, and sequenced by Illumina short read sequencing. Results: The short reads are publicly available in the Short Reads Archive. They were also uploaded to EnteroBase, which assembled and annotated draft genomes. 9769 draft genomes which passed quality control were genotyped with multiple levels of multilocus sequence typing, and used to predict serovars. Genomes were assigned to hierarchical clusters on the basis of numbers of pair-wise allelic differences in core genes, which were mapped to genetic Lineages within phylogenetic trees. Conclusions: The University of Warwick/University College Cork (UoWUCC) project greatly extends the geographic sources, dates and core genomic diversity of publicly available S. enterica genomes. We illustrate these features by an overview of core genomic Lineages within 33,000 publicly available Salmonella genomes whose strains were isolated before 2011. We also present detailed examinations of HC400, HC900 and HC2000 hierarchical clusters within exemplar Lineages, including serovars Typhimurium, Enteritidis and Mbandaka. These analyses confirm the polyphyletic nature of multiple serovars while showing that discrete clusters with geographical specificity can be reliably recognized by hierarchical clustering approaches. The results also demonstrate that the genomes sequenced here provide an important counterbalance to the sampling bias which is so dominant in current genomic sequencing.
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Affiliation(s)
- Mark Achtman
- Warwick Medical School, University of Warwick, Coventry, CV4 7AL, UK
| | - Zhemin Zhou
- Warwick Medical School, University of Warwick, Coventry, CV4 7AL, UK
| | | | - William Tyne
- Warwick Medical School, University of Warwick, Coventry, CV4 7AL, UK
| | - Julian Parkhill
- Department of Veterinary Medicine, University of Cambridge, Cambridge, CB3 0ES, UK
| | - Martin Cormican
- National Salmonella, Shigella and Listeria Reference Laboratory, Galway, H91 YR71, Ireland
| | - Chien-Shun Chiou
- Central Regional Laboratory, Center for Diagnostics and Vaccine Development, Centers for Disease Control, Taichung, None, Taiwan
| | - Mia Torpdahl
- Statens Serum Institut, Copenhagen S, DK-2300, Denmark
| | - Eva Litrup
- Statens Serum Institut, Copenhagen S, DK-2300, Denmark
| | - Deirdre M. Prendergast
- Backweston complex, Department of Agriculture, Food and the Marine (DAFM), Celbridge, Co. Kildare, W23 X3PH, Ireland
| | - John E. Moore
- Northern Ireland Public Health Laboratory, Department of Bacteriology, Belfast City Hospital, Belfast, BT9 7AD, UK
| | - Sam Strain
- Animal Health and Welfare NI, Dungannon, BT71 6JT, UK
| | - Christian Kornschober
- Institute for Medical Microbiology and Hygiene, Austrian Agency for Health and Food Safety (AGES), Graz, 8010, Austria
| | - Richard Meinersmann
- US National Poultry Research Center, USDA Agricultural Research Service, Athens, GA, 30605, USA
| | - Alexandra Uesbeck
- Institute for Medical Microbiology, Immunology, and Hygiene, University of Cologne, Cologne, 50935, Germany
| | - François-Xavier Weill
- Unité des bactéries pathogènes entériques, Institut Pasteur, Paris, cedex 15, France
| | - Aidan Coffey
- Cork Institute of Technology, Cork, T12P928, Ireland
| | - Helene Andrews-Polymenis
- Dept. of Microbial Pathogenesis and Immunology, College of Medicine Texas A&M University, Bryan, TX, 77807, USA
| | - Roy Curtiss 3rd
- Dept. of Infectious Diseases & Immunology, College of Veterinary Medicine, University of Florida, Gainesville, Florida, 32611, USA
| | - Séamus Fanning
- UCD-Centre for Food Safety, University College Dublin, Dublin, D04 N2E5, Ireland
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13
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Prabhakar P, Lekshmi M, Ammini P, Nayak BB, Kumar S. Salmonella Contamination of Seafood in Landing Centers and Retail Markets of Mumbai, India. J AOAC Int 2020; 103:1361-1365. [DOI: 10.1093/jaoacint/qsaa042] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2020] [Revised: 03/03/2020] [Accepted: 03/20/2020] [Indexed: 12/19/2022]
Abstract
Abstract
Background
Seafood contamination with Salmonella enterica is not only a public health concern, but can also lead to economic losses due to import rejections. Continuous monitoring of seafood for Salmonella is necessary for risk assessment and to establish suitable control measures.
Objective
The objective of this study was to determine the extent of Salmonella contamination of seafood in fish landing centers and retails markets.
Methods
In this study, we analyzed seafood samples from three fish landing centers and seven retail markets of Mumbai, India for S. enterica contamination. Salmonella was isolated using multiple selective enrichment broths and selective agars, and identified by conventional biochemical tests followed by polymerase chain reaction (PCR).
Results
Of 82 samples of seafood, comprising both finfish and shellfish, Salmonella was detected in 17 (20.7%) finfish samples. None of the shellfish samples (shrimps, clams, and cephalopods) were found to be contaminated with Salmonella. Samples from both landing centers and fish markets, as well as from pelagic and demersal sources, harbored Salmonella. Source-wise analysis showed that 11 of 57 (19.3%) samples from retail fish markets and 6 of 25 (24%) samples from fish landing centers were contaminated with Salmonella.
Conclusions
The study emphasizes the need to implement measures to prevent anthropogenic contamination of coastal waters and improve the hygiene of retail fish markets in Mumbai.
Highlights
Seafood from landing centers and retail markets, as well as from pelagic and demersalhabitats were similarly contaminated with Salmonella. Fish species widely consumed in the region of this study were found highly contaminated with Salmonella.
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Affiliation(s)
- Parmanand Prabhakar
- ICAR—Central Institute of Fisheries Education, Post Harvest Technology, QC Laboratory, Versova, Mumbai 400061, India
| | - Manjusha Lekshmi
- ICAR—Central Institute of Fisheries Education, Post Harvest Technology, QC Laboratory, Versova, Mumbai 400061, India
| | - Parvathi Ammini
- CSIR—National Institute of Oceanography, Regional Centre, Kochi 682018, India
| | - Binaya Bhusan Nayak
- ICAR—Central Institute of Fisheries Education, Post Harvest Technology, QC Laboratory, Versova, Mumbai 400061, India
| | - Sanath Kumar
- ICAR—Central Institute of Fisheries Education, Post Harvest Technology, QC Laboratory, Versova, Mumbai 400061, India
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14
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Prevalence of non-typhoidal Salmonella enterica in food products in the Middle East and North Africa: A systematic review and meta-analysis. Food Control 2020. [DOI: 10.1016/j.foodcont.2019.106908] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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15
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Bozcal E, Dagdeviren M. Bacterial metagenome analysis of Mytilus galloprovincialis collected from Istanbul and Izmir coastal stations of Turkey. ENVIRONMENTAL MONITORING AND ASSESSMENT 2020; 192:186. [PMID: 32072329 DOI: 10.1007/s10661-020-8129-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2019] [Accepted: 01/30/2020] [Indexed: 06/10/2023]
Abstract
Mytilus galloprovincialis is a marine mollusk belonging to the Bivalvia class. It has been distributed largely in Turkish shores and worldwide aquatic environments. Besides being known as an environmental pollution indicator, it is highly consumed as a food and has a high economic value. Due to their nutritional mechanisms by filtering water, they are affected by pollution in seawater and mussels can host-microbial diversity of environmental origin as well as pathogenic bacteria. Therefore, in this study, bacterial species found in Mediterranean mussels collected from the coastal stations of Istanbul [Rumeli Kavagi (RK), Kucukcekmece (KC)], and Izmir [(Foca (MF), Urla (MU)] were investigated and compared with microbiological and metagenomic analyses. According to microbiological analysis results, 34 mussel-associated Enterobacteriaceae and Vibrionaceae family members were identified. As a result of the culture-independent metagenomic analysis, taxonomic groups for each station were identified and compared based on Operational Taxonomic Unit data. For all stations, the most abundant bacterial genera were the unclassified bacterial genera. The total number of mussel-related total richness identified in all groups was 4889 (RK = 1605; KC = 1930; MF = 1508; and MU = 1125). According to the metagenomic data obtained in this study, different relative amounts of Lachnospiraceae and Bacteroidetes taxa groups were reported for all stations. The pathogenic bacterial genera identified by metagenomic analyses which may be significant for the public health are Arcobacter, Clostridium, Aeromonas, Vibrio, Escherichia_Shigella, Klebsiella, Campylobacter, Helicobacter, Pseudomonas, Morganella, Serratia, Corynebacterium, Enterococcus, Staphylococcus, Yersinia, Mycoplasma, Brucellaceae_unclassified, Pantoea, and Proteus.
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Affiliation(s)
- Elif Bozcal
- Department of Biology, Faculty of Science, Istanbul University, Vezneciler, 34134, Istanbul, Turkey.
| | - Melih Dagdeviren
- Department of Biology, Faculty of Science, Ege University, Bornova, 35040, Izmir, Turkey
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16
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Ashrafudoulla M, Mizan MFR, Park H, Byun KH, Lee N, Park SH, Ha SD. Genetic Relationship, Virulence Factors, Drug Resistance Profile and Biofilm Formation Ability of Vibrio parahaemolyticus Isolated From Mussel. Front Microbiol 2019; 10:513. [PMID: 30949142 PMCID: PMC6435529 DOI: 10.3389/fmicb.2019.00513] [Citation(s) in RCA: 51] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2019] [Accepted: 02/27/2019] [Indexed: 12/14/2022] Open
Abstract
The objective of this study was to investigate the virulence factors, genetic relationship, antibiotic resistance profile and the biofilm formation ability of Vibrio parahaemolyticus isolates on shrimp and mussel surfaces at 30°C. In this study, eight (n = 8) V. parahaemolyticus isolated from mussel were examined. We used the polymerase chain reaction (PCR) to examine the distribution of different genes, and Repetitive Extragenic Palindromic-PCR (REP-PCR) to compare the genetic relationship. Disk diffusion technique was used to assess antibiotic and multiple-antibiotic resistance. The biofilm formation assay, and field emission scanning electron microscopy (FE-SEM) were used to evaluate biofilm formation ability. Transmission Electron Microscope (TEM) was used to observe the morphological structure of bacterial cell. Our results indicated that the biofilm-associated genes, 16S rRNA, toxR, and tdh, were present in all the tested V. parahaemolyticus isolates (n = 8). Approximately, 62.5% (5 isolates among 8 isolates) isolates showed strong multiple-antibiotic resistance index with an average value of 0.56. All isolates (n = 8) showed strong genetic relationship and significant biofilm formation ability on shrimp and mussel surfaces. This study demonstrated that the presence of virulence factors, high multiple antibiotic resistance index (MARI) values, and effective biofilm formation ability of V. parahaemolyticus isolates could be a great threat to human health and economic values in future. It was also suggested that a high resistance rate to antibiotic could be ineffective for treating V. parahaemolyticus infections. The continuous monitoring of V. parahaemolyticus antibiotic, molecular and biofilm characteristics is needed to increase seafood safety.
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Affiliation(s)
- Md. Ashrafudoulla
- Department of Food Science and Technology, Advanced Food Safety Research Group, Brain Korea 21 Plus, Chung-Ang University, Anseong, South Korea
| | - Md. Furkanur Rahaman Mizan
- Department of Food Science and Technology, Advanced Food Safety Research Group, Brain Korea 21 Plus, Chung-Ang University, Anseong, South Korea
| | - Heedae Park
- Department of Food Science and Technology, Advanced Food Safety Research Group, Brain Korea 21 Plus, Chung-Ang University, Anseong, South Korea
| | - Kye-Hwan Byun
- Department of Food Science and Technology, Advanced Food Safety Research Group, Brain Korea 21 Plus, Chung-Ang University, Anseong, South Korea
| | - Nari Lee
- Food Safety Research Group, Korea Food Research Institute, Seongnam, South Korea
| | - Si Hong Park
- Food Science and Technology, Oregon State University, Corvallis, OR, United States
| | - Sang-Do Ha
- Department of Food Science and Technology, Advanced Food Safety Research Group, Brain Korea 21 Plus, Chung-Ang University, Anseong, South Korea
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17
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Bighiu MA, Norman Haldén A, Goedkoop W, Ottoson J. Assessing microbial contamination and antibiotic resistant bacteria using zebra mussels (Dreissena polymorpha). THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 650:2141-2149. [PMID: 30290355 DOI: 10.1016/j.scitotenv.2018.09.314] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2018] [Revised: 09/20/2018] [Accepted: 09/24/2018] [Indexed: 06/08/2023]
Abstract
Aquatic pollution with faecal bacteria and subsequent consumption of contaminated water or food is a worldwide issue that causes severe health effects (e.g. meningitis, salmonellosis, dysentery). In addition, the excessive use of antibiotics in animal husbandry and human medicine has enhanced the selective pressure on pathogenic bacteria, further increasing human health risks and detrimental effects on natural microbial communities. This urges the need to monitor faecal contamination using a time-integrated approach, as grab water samples can miss pathogen peaks. We tested the ability of zebra mussels (Dreissena polymorpha) to take up and depurate faecal indicator bacteria such as Escherichia coli and intestinal enterococci. Furthermore, we quantified the frequency of antibiotic resistant bacteria in water and mussels both in controlled laboratory tests and under in situ conditions downstream of a sewage treatment plant (STP). Laboratory results show that bacterial indicators in mussels were 132 times higher than their concentration in water, and that mussels retained bacteria up to 2 days after pulse exposure. Field results show decreasing bacterial concentrations in both water and mussels downstream the STP, with maximum E. coli concentrations ranging 173-9 cfu mL-1 in water and 2970-330 cfu g-1 in mussels. Similarly, enterococci ranged 59-4 cfu mL-1 and 1450-240 cfu g-1 in water and mussels, respectively. High proportions of antibiotic resistant E. coli were found in mussels (72%) and water (65%), and slightly lower proportion of resistant enterococci was found in mussels (47%) and in water (34%). Moreover, 33% of the bacteria isolated from mussels were resistant to multiple antibiotics, which emphasizes that resistance is a common feature in surface waters and highlights the need for safe water management. Our results show that zebra mussels provide an efficient, time-integrating tool for quantifying faecal indicators, including resistant and multidrug resistant bacteria.
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Affiliation(s)
- Maria Alexandra Bighiu
- Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences (SLU), Sweden.
| | - Anna Norman Haldén
- Department of Biomedical Sciences and Veterinary Public Health, SLU, Sweden
| | - Willem Goedkoop
- Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences (SLU), Sweden
| | - Jakob Ottoson
- Department of Risk Benefit Assessment, National Food Agency, Sweden
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18
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Abioye OE, Okoh AI. Limpet ( Scutellastra cochlear) Recovered From Some Estuaries in the Eastern Cape Province, South Africa Act as Reservoirs of Pathogenic Vibrio Species. Front Public Health 2018; 6:237. [PMID: 30234084 PMCID: PMC6128111 DOI: 10.3389/fpubh.2018.00237] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2018] [Accepted: 08/08/2018] [Indexed: 12/19/2022] Open
Abstract
Limpet (Scutellastra cochlear) serves as seafood recipe and an important member of the aquatic food chain. It is an abundant mollusc in some aquatic environment in South Africa. In this study, we investigated the potential of the molluscs harvested from the Buffalo, Swartkops, and Kowie estuaries in the Eastern Cape Province, South Africa to serve as transient or maintenance reservoir of Vibrio species. The mollusc and source water samples were collected monthly from the rivers between December 2016 and November 2017. The reservoir category of the limpet samples recovered was determined by employing the combination of MPN-PCR method and statistical analysis (comparison of mean and proportion tests). The densities of Vibrio spp. in limpet and their source water samples were determined using MPN-PCR methods. Presumptive isolates were recovered by processing the samples with thiosulfate-citrate-bile salts-sucrose agar and where necessary, samples were enriched with alkaline peptone water. The presumptive isolates were identified using PCR methods with emphasis on six Vibrio species of public health importance. Vibrio spp. were detected in all the limpet samples but not in all the water samples. The densities of Vibrio spp. in the limpet samples were more than the densities of Vibrio species in their source water and these were significant at P < 0.05. In like manner, five out of the six key Vibrio pathogens targeted in this study were more prevalent in limpet samples than in source water samples. Based on our findings, we concluded that our method though could be improved on, is efficient for the determination of reservoir types of bacterial-carrying organisms. We also concluded that the limpet found in the estuaries are not just a transient but a maintenance reservoir of Vibrio spp. which could cause vibrio-related infections.
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Affiliation(s)
- Oluwatayo E Abioye
- SAMRC Microbial Water Quality Monitoring Centre, University of Fort Hare, Alice, South Africa.,Applied and Environmental Microbiology Research Group, Department Of Biochemistry and Microbiology, University of Fort Hare, Alice, South Africa.,Department of Microbiology, Obafemi Awolowo University, Ile-Ife, Nigeria
| | - Anthony I Okoh
- SAMRC Microbial Water Quality Monitoring Centre, University of Fort Hare, Alice, South Africa.,Applied and Environmental Microbiology Research Group, Department Of Biochemistry and Microbiology, University of Fort Hare, Alice, South Africa
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19
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Rubini S, Galletti G, D’Incau M, Govoni G, Boschetti L, Berardelli C, Barbieri S, Merialdi G, Formaglio A, Guidi E, Bergamini M, Piva S, Serraino A, Giacometti F. Occurrence of Salmonella enterica subsp. enterica in bivalve molluscs and associations with Escherichia coli in molluscs and faecal coliforms in seawater. Food Control 2018. [DOI: 10.1016/j.foodcont.2017.08.035] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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20
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Fonteneau L, Jourdan Da Silva N, Fabre L, Ashton P, Torpdahl M, Müller L, Bouchrif B, El Boulani A, Valkanou E, Mattheus W, Friesema I, Herrera Leon S, Varela Martínez C, Mossong J, Severi E, Grant K, Weill FX, Gossner CM, Bertrand S, Dallman T, Le Hello S. Multinational outbreak of travel-related Salmonella Chester infections in Europe, summers 2014 and 2015. Euro Surveill 2017; 22:30463. [PMID: 28230522 PMCID: PMC5322187 DOI: 10.2807/1560-7917.es.2017.22.7.30463] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2016] [Accepted: 02/06/2017] [Indexed: 02/04/2023] Open
Abstract
Between 2014 and 2015, the European Centre for Disease Prevention and Control was informed of an increase in numbers of Salmonella enterica serotype Chester cases with travel to Morocco occurring in six European countries. Epidemiological and microbiological investigations were conducted. In addition to gathering information on the characteristics of cases from the different countries in 2014, the epidemiological investigation comprised a matched case-case study involving French patients with salmonellosis who travelled to Morocco that year. A univariate conditional logistic regression was performed to quantify associations. The microbiological study included a whole genome sequencing (WGS) analysis of clinical and non-human isolates of S. Chester of varied place and year of isolation. A total of 162 cases, mostly from France, followed by Belgium, the Netherlands, Spain, Denmark and Sweden were reported, including 86 (53%) women. The median age per country ranged from 3 to 38 years. Cases of S. Chester were more likely to have eaten in a restaurant and visited the coast of Morocco. The results of WGS showed five multilocus sequence types (ST), with 96 of 153 isolates analysed clustering into a tight group that corresponded to a novel ST, ST1954. Of these 96 isolates, 46 (48%) were derived from food or patients returning from Morocco and carried two types of plasmids containing either qnrS1 or qnrB19 genes. This European-wide outbreak associated with travel to Morocco was likely a multi-source outbreak with several food vehicles contaminated by multidrug-resistant S. Chester strains.
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Affiliation(s)
- Laure Fonteneau
- Santé publique France, the French national public health agency, Saint-Maurice, France
- European Programme for Intervention Epidemiology Training (EPIET), European Centre for Disease Prevention and Control (ECDC), Stockholm, Sweden
| | | | - Laetitia Fabre
- Institut Pasteur, French National Reference Center for E. coli, Shigella and Salmonella, Paris, France
| | - Philip Ashton
- Public Health England, Gastrointestinal Bacterial Reference Unit, London, England
| | | | | | - Brahim Bouchrif
- Institut Pasteur du Maroc, Sécurité alimentaire et environnement, Casablanca, Morocco
| | | | - Eleni Valkanou
- NRL Salmonella & AMR, Veterinary Laboratory of Chalkida, Greece
| | | | - Ingrid Friesema
- Netherlands National Institute for Public Health and the Environment (RIVM), the Netherlands
| | | | | | | | - Ettore Severi
- European Centre for Disease Prevention and Control, Stockholm, Sweden
| | - Kathie Grant
- Public Health England, Gastrointestinal Bacterial Reference Unit, London, England
| | - François-Xavier Weill
- Institut Pasteur, French National Reference Center for E. coli, Shigella and Salmonella, Paris, France
| | - Céline M Gossner
- European Centre for Disease Prevention and Control, Stockholm, Sweden
- School of Public Health and Primary Care (CAPHRI), Maastricht University Medical Center (MUMC+), Maastricht, the Netherlands
| | | | - Tim Dallman
- Public Health England, Gastrointestinal Bacterial Reference Unit, London, England
| | - Simon Le Hello
- Institut Pasteur, French National Reference Center for E. coli, Shigella and Salmonella, Paris, France
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21
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Escalante-Maldonado O, Kayali AY, Yamazaki W, Vuddhakul V, Nakaguchi Y, Nishibuchi M. Improvement of the quantitation method for the tdh (+) Vibrio parahaemolyticus in molluscan shellfish based on most-probable- number, immunomagnetic separation, and loop-mediated isothermal amplification. Front Microbiol 2015; 6:270. [PMID: 25914681 PMCID: PMC4391040 DOI: 10.3389/fmicb.2015.00270] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2015] [Accepted: 03/18/2015] [Indexed: 11/18/2022] Open
Abstract
Vibrio parahaemolyticus is a marine microorganism that can cause seafood-borne gastroenteritis in humans. The infection can be spread and has become a pandemic through the international trade of contaminated seafood. Strains carrying the tdh gene encoding the thermostable direct hemolysin (TDH) and/or the trh gene encoding the TDH-related hemolysin (TRH) are considered to be pathogenic with the former gene being the most frequently found in clinical strains. However, their distribution frequency in environmental isolates is below 1%. Thus, very sensitive methods are required for detection and quantitation of tdh+ strains in seafood. We previously reported a method to detect and quantify tdh+V. parahaemolyticus in seafood. This method consists of three components: the most-probable-number (MPN), the immunomagnetic separation (IMS) targeting all established K antigens, and the loop-mediated isothermal amplification (LAMP) targeting the tdh gene. However, this method faces regional issues in tropical zones of the world. Technicians have difficulties in securing dependable reagents in high-temperature climates where we found MPN underestimation in samples having tdh+ strains as well as other microorganisms present at high concentrations. In the present study, we solved the underestimation problem associated with the salt polymyxin broth enrichment for the MPN component and with the immunomagnetic bead-target association for the IMS component. We also improved the supply and maintenance of the dependable reagents by introducing a dried reagent system to the LAMP component. The modified method is specific, sensitive, quick and easy and applicable regardless of the concentrations of tdh+V. parahaemolyticus. Therefore, we conclude this modified method is useful in world tropical, sub-tropical, and temperate zones.
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Affiliation(s)
| | - Ahmad Y Kayali
- Department of Pathogenic Microbiology, Graduate School of Medicine, Kyoto University Kyoto, Japan
| | - Wataru Yamazaki
- Department of Veterinary Science, Faculty of Agriculture, University of Miyazaki Miyazaki, Japan
| | - Varaporn Vuddhakul
- Department of Microbiology, Faculty of Science, Prince of Songkla University Hat Yai, Thailand
| | - Yoshitsugu Nakaguchi
- Division of Human-Nature Dynamics, Center for Southeast Asian Studies, Kyoto University Kyoto, Japan
| | - Mitsuaki Nishibuchi
- Division of Human-Nature Dynamics, Center for Southeast Asian Studies, Kyoto University Kyoto, Japan
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