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For: Helen D, Kim H, Tytgat B, Anne W. Highly diverse nirK genes comprise two major clades that harbour ammonium-producing denitrifiers. BMC Genomics 2016;17:155. [PMID: 26923558 DOI: 10.1186/s12864-016-2465-0] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2015] [Accepted: 02/12/2016] [Indexed: 01/09/2023]  Open
Number Cited by Other Article(s)
1
Ming Y, Abdullah Al M, Zhang D, Zhu W, Liu H, Cai L, Yu X, Wu K, Niu M, Zeng Q, He Z, Yan Q. Insights into the evolutionary and ecological adaption strategies of nirS- and nirK-type denitrifying communities. Mol Ecol 2024:e17507. [PMID: 39158107 DOI: 10.1111/mec.17507] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2024] [Revised: 07/19/2024] [Accepted: 08/07/2024] [Indexed: 08/20/2024]
2
Zhao Z, Zhao Y, Marotta F, Xamxidin M, Li H, Xu J, Hu B, Wu M. The microbial community structure and nitrogen cycle of high-altitude pristine saline lakes on the Qinghai-Tibetan plateau. Front Microbiol 2024;15:1424368. [PMID: 39132143 PMCID: PMC11312105 DOI: 10.3389/fmicb.2024.1424368] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2024] [Accepted: 06/18/2024] [Indexed: 08/13/2024]  Open
3
Aralappanavar VK, Mukhopadhyay R, Yu Y, Liu J, Bhatnagar A, Praveena SM, Li Y, Paller M, Adyel TM, Rinklebe J, Bolan NS, Sarkar B. Effects of microplastics on soil microorganisms and microbial functions in nutrients and carbon cycling - A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;924:171435. [PMID: 38438042 DOI: 10.1016/j.scitotenv.2024.171435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Revised: 03/01/2024] [Accepted: 03/01/2024] [Indexed: 03/06/2024]
4
Wei C, Su F, Yue H, Song F, Li H. Spatial distribution characteristics of denitrification functional genes and the environmental drivers in Liaohe estuary wetland. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024;31:1064-1078. [PMID: 38030842 DOI: 10.1007/s11356-023-30938-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Accepted: 11/03/2023] [Indexed: 12/01/2023]
5
Huang J, Zhao W, Ju J, Liu S, Ye J, Long Y. The existence of ferric hydroxide links the carbon and nitrogen cycles by promoting nitrite-coupled methane anaerobic oxidation. WATER RESEARCH 2023;243:120192. [PMID: 37454463 DOI: 10.1016/j.watres.2023.120192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Revised: 06/04/2023] [Accepted: 06/06/2023] [Indexed: 07/18/2023]
6
Zhao R, Le Moine Bauer S, Babbin AR. "Candidatus Subterrananammoxibiaceae," a New Anammox Bacterial Family in Globally Distributed Marine and Terrestrial Subsurfaces. Appl Environ Microbiol 2023;89:e0080023. [PMID: 37470485 PMCID: PMC10467342 DOI: 10.1128/aem.00800-23] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2023] [Accepted: 06/29/2023] [Indexed: 07/21/2023]  Open
7
Bösch Y, Pold G, Saghaï A, Karlsson M, Jones CM, Hallin S. Distribution and Environmental Drivers of Fungal Denitrifiers in Global Soils. Microbiol Spectr 2023;11:e0006123. [PMID: 37222601 PMCID: PMC10269876 DOI: 10.1128/spectrum.00061-23] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Accepted: 05/05/2023] [Indexed: 05/25/2023]  Open
8
Torregrosa-Crespo J, Miralles-Robledillo JM, Bernabeu E, Pire C, Martínez-Espinosa RM. Denitrification in hypersaline and coastal environments. FEMS Microbiol Lett 2023;370:fnad066. [PMID: 37422443 PMCID: PMC10423024 DOI: 10.1093/femsle/fnad066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 06/09/2023] [Accepted: 07/05/2023] [Indexed: 07/10/2023]  Open
9
Le Moine Bauer S, Lu GS, Goulaouic S, Puzenat V, Schouw A, Barreyre T, Pawlowsky-Glahn V, Egozcue JJ, Martelat JE, Escartin J, Amend JP, Nomikou P, Vlasopoulos O, Polymenakou P, Jørgensen SL. Structure and metabolic potential of the prokaryotic communities from the hydrothermal system of Paleochori Bay, Milos, Greece. Front Microbiol 2023;13:1060168. [PMID: 36687571 PMCID: PMC9852839 DOI: 10.3389/fmicb.2022.1060168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2022] [Accepted: 12/01/2022] [Indexed: 01/09/2023]  Open
10
Mishra S, Wang W, Xia S, Lin L, Yang X. Spatial pattern of functional genes abundance reveals the importance of PhoD gene harboring bacterial community for maintaining plant growth in the tropical forest of Southwestern China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022;842:156863. [PMID: 35750182 DOI: 10.1016/j.scitotenv.2022.156863] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Revised: 06/08/2022] [Accepted: 06/17/2022] [Indexed: 06/15/2023]
11
Li S, Jiang Z, Ji G. Effect of sulfur sources on the competition between denitrification and DNRA. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022;305:119322. [PMID: 35447253 DOI: 10.1016/j.envpol.2022.119322] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Revised: 04/13/2022] [Accepted: 04/14/2022] [Indexed: 06/14/2023]
12
Wang Z, Jimenez-Fernandez O, Osenbrück K, Schwientek M, Schloter M, Fleckenstein JH, Lueders T. Streambed microbial communities in the transition zone between groundwater and a first-order stream as impacted by bidirectional water exchange. WATER RESEARCH 2022;217:118334. [PMID: 35397370 DOI: 10.1016/j.watres.2022.118334] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Revised: 03/15/2022] [Accepted: 03/19/2022] [Indexed: 06/14/2023]
13
Wang Y, Li D, Song X, Cao X, Xu Z, Huang W, Wang Y, Wang Z, Sand W. Intensifying anoxic ammonium removal by manganese ores and granular active carbon fillings in constructed wetland-microbial fuel cells: Metagenomics reveals functional genes and microbial mechanisms. BIORESOURCE TECHNOLOGY 2022;352:127114. [PMID: 35390482 DOI: 10.1016/j.biortech.2022.127114] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Revised: 03/31/2022] [Accepted: 04/01/2022] [Indexed: 06/14/2023]
14
Soils and sediments host Thermoplasmata archaea encoding novel copper membrane monooxygenases (CuMMOs). THE ISME JOURNAL 2022;16:1348-1362. [PMID: 34987183 PMCID: PMC9038741 DOI: 10.1038/s41396-021-01177-5] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Revised: 12/02/2021] [Accepted: 12/10/2021] [Indexed: 01/22/2023]
15
G Fortin S, Song B, C Anderson I. Microbially mediated nitrogen removal and retention in the York River Estuary. FEMS Microbiol Ecol 2021;97:6354774. [PMID: 34410371 DOI: 10.1093/femsec/fiab118] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Accepted: 08/16/2021] [Indexed: 11/14/2022]  Open
16
Bernabeu E, Miralles-Robledillo JM, Giani M, Valdés E, Martínez-Espinosa RM, Pire C. In Silico Analysis of the Enzymes Involved in Haloarchaeal Denitrification. Biomolecules 2021;11:biom11071043. [PMID: 34356667 PMCID: PMC8301774 DOI: 10.3390/biom11071043] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Revised: 07/02/2021] [Accepted: 07/09/2021] [Indexed: 12/18/2022]  Open
17
Gazitúa MC, Vik DR, Roux S, Gregory AC, Bolduc B, Widner B, Mulholland MR, Hallam SJ, Ulloa O, Sullivan MB. Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters. THE ISME JOURNAL 2021;15:981-998. [PMID: 33199808 PMCID: PMC8115048 DOI: 10.1038/s41396-020-00825-6] [Citation(s) in RCA: 56] [Impact Index Per Article: 18.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Revised: 09/30/2020] [Accepted: 10/27/2020] [Indexed: 01/29/2023]
18
Hetz SA, Horn MA. Burkholderiaceae Are Key Acetate Assimilators During Complete Denitrification in Acidic Cryoturbated Peat Circles of the Arctic Tundra. Front Microbiol 2021;12:628269. [PMID: 33613495 PMCID: PMC7892595 DOI: 10.3389/fmicb.2021.628269] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Accepted: 01/18/2021] [Indexed: 01/23/2023]  Open
19
Luo ZH, Narsing Rao MP, Chen H, Hua ZS, Li Q, Hedlund BP, Dong ZY, Liu BB, Guo SX, Shu WS, Li WJ. Genomic Insights of "Candidatus Nitrosocaldaceae" Based on Nine New Metagenome-Assembled Genomes, Including "Candidatus Nitrosothermus" Gen Nov. and Two New Species of "Candidatus Nitrosocaldus". Front Microbiol 2021;11:608832. [PMID: 33488549 PMCID: PMC7819960 DOI: 10.3389/fmicb.2020.608832] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Accepted: 12/09/2020] [Indexed: 01/11/2023]  Open
20
Yu J, Pavia MJ, Deem LM, Crow SE, Deenik JL, Penton CR. DNA-Stable Isotope Probing Shotgun Metagenomics Reveals the Resilience of Active Microbial Communities to Biochar Amendment in Oxisol Soil. Front Microbiol 2020;11:587972. [PMID: 33329461 PMCID: PMC7717982 DOI: 10.3389/fmicb.2020.587972] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Accepted: 10/08/2020] [Indexed: 12/03/2022]  Open
21
Podlesnaya GV, Potapov SA, Krasnopeev AY, Shtykova YR, Tomberg IV, Timoshkin OA, Belykh OI. Diversity of Denitrifying Bacteria in Biofilms Formed on Stony Substrates of the Lake Baikal Littoral Zone. Microbiology (Reading) 2020. [DOI: 10.1134/s0026261720030133] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
22
Seeley ME, Song B, Passie R, Hale RC. Microplastics affect sedimentary microbial communities and nitrogen cycling. Nat Commun 2020;11:2372. [PMID: 32398678 PMCID: PMC7217880 DOI: 10.1038/s41467-020-16235-3] [Citation(s) in RCA: 450] [Impact Index Per Article: 112.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2019] [Accepted: 04/14/2020] [Indexed: 11/09/2022]  Open
23
Hu J, Zhou Y, Lei Z, Liu G, Hua Y, Zhou W, Wan X, Zhu D, Zhao J. Effects of Potamogeton crispus decline in the rhizosphere on the abundance of anammox bacteria and nirS denitrifying bacteria. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2020;260:114018. [PMID: 31991343 DOI: 10.1016/j.envpol.2020.114018] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2019] [Revised: 01/17/2020] [Accepted: 01/17/2020] [Indexed: 05/23/2023]
24
Hernández-Del Amo E, Ramió-Pujol S, Gich F, Trias R, Bañeras L. Changes in the Potential Activity of Nitrite Reducers and the Microbial Community Structure After Sediment Dredging and Plant Removal in the Empuriabrava FWS-CW. MICROBIAL ECOLOGY 2020;79:588-603. [PMID: 31486865 DOI: 10.1007/s00248-019-01425-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Accepted: 08/08/2019] [Indexed: 06/10/2023]
25
Wu YW, Yang SH, Hwangbo M, Chu KH. Analysis of Zobellella denitrificans ZD1 draft genome: Genes and gene clusters responsible for high polyhydroxybutyrate (PHB) production from glycerol under saline conditions and its CRISPR-Cas system. PLoS One 2019;14:e0222143. [PMID: 31513626 PMCID: PMC6742469 DOI: 10.1371/journal.pone.0222143] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2019] [Accepted: 08/22/2019] [Indexed: 01/25/2023]  Open
26
Diamond S, Andeer PF, Li Z, Crits-Christoph A, Burstein D, Anantharaman K, Lane KR, Thomas BC, Pan C, Northen TR, Banfield JF. Mediterranean grassland soil C-N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms. Nat Microbiol 2019;4:1356-1367. [PMID: 31110364 PMCID: PMC6784897 DOI: 10.1038/s41564-019-0449-y] [Citation(s) in RCA: 96] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2018] [Accepted: 04/03/2019] [Indexed: 12/15/2022]
27
Vuono DC, Read RW, Hemp J, Sullivan BW, Arnone JA, Neveux I, Blank RR, Loney E, Miceli D, Winkler MKH, Chakraborty R, Stahl DA, Grzymski JJ. Resource Concentration Modulates the Fate of Dissimilated Nitrogen in a Dual-Pathway Actinobacterium. Front Microbiol 2019;10:3. [PMID: 30723459 PMCID: PMC6349771 DOI: 10.3389/fmicb.2019.00003] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2018] [Accepted: 01/07/2019] [Indexed: 11/30/2022]  Open
28
Liu B, Zhang X, Bakken LR, Snipen L, Frostegård Å. Rapid Succession of Actively Transcribing Denitrifier Populations in Agricultural Soil During an Anoxic Spell. Front Microbiol 2019;9:3208. [PMID: 30671037 PMCID: PMC6331397 DOI: 10.3389/fmicb.2018.03208] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2018] [Accepted: 12/11/2018] [Indexed: 12/25/2022]  Open
29
Stewart LJ, Thaqi D, Kobe B, McEwan AG, Waldron KJ, Djoko KY. Handling of nutrient copper in the bacterial envelope. Metallomics 2019;11:50-63. [DOI: 10.1039/c8mt00218e] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
30
Calderoli PA, Espínola FJ, Dionisi HM, Gil MN, Jansson JK, Lozada M. Predominance and high diversity of genes associated to denitrification in metagenomes of subantarctic coastal sediments exposed to urban pollution. PLoS One 2018;13:e0207606. [PMID: 30496195 PMCID: PMC6264515 DOI: 10.1371/journal.pone.0207606] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2018] [Accepted: 11/02/2018] [Indexed: 11/20/2022]  Open
31
Maeda K, Miyatake F, Asano R, Nakajima KI, Maeda T, Iwabuchi K. Response of the denitrifier community and its relationship with multiple N2O emission peaks after mature compost addition into dairy manure compost with forced aeration. CHEMOSPHERE 2018;206:310-319. [PMID: 29754055 DOI: 10.1016/j.chemosphere.2018.04.169] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2018] [Revised: 04/09/2018] [Accepted: 04/27/2018] [Indexed: 06/08/2023]
32
Chutivisut P, Isobe K, Powtongsook S, Pungrasmi W, Kurisu F. Distinct Microbial Community Performing Dissimilatory Nitrate Reduction to Ammonium (DNRA) in a High C/NO3- Reactor. Microbes Environ 2018;33:264-271. [PMID: 30089740 PMCID: PMC6167113 DOI: 10.1264/jsme2.me17193] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
33
Aanderud ZT, Saurey S, Ball BA, Wall DH, Barrett JE, Muscarella ME, Griffin NA, Virginia RA, Barberán A, Adams BJ. Stoichiometric Shifts in Soil C:N:P Promote Bacterial Taxa Dominance, Maintain Biodiversity, and Deconstruct Community Assemblages. Front Microbiol 2018;9:1401. [PMID: 30018601 PMCID: PMC6037766 DOI: 10.3389/fmicb.2018.01401] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2018] [Accepted: 06/07/2018] [Indexed: 11/13/2022]  Open
34
Nitrogen Cycle Evaluation (NiCE) Chip for Simultaneous Analysis of Multiple N Cycle-Associated Genes. Appl Environ Microbiol 2018. [PMID: 29427421 DOI: 10.1128/aem.02615‐17] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
35
Nitrogen Cycle Evaluation (NiCE) Chip for Simultaneous Analysis of Multiple N Cycle-Associated Genes. Appl Environ Microbiol 2018;84:AEM.02615-17. [PMID: 29427421 DOI: 10.1128/aem.02615-17] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2017] [Accepted: 01/28/2018] [Indexed: 01/20/2023]  Open
36
Touceda-González M, Prieto-Fernández Á, Renella G, Giagnoni L, Sessitsch A, Brader G, Kumpiene J, Dimitriou I, Eriksson J, Friesl-Hanl W, Galazka R, Janssen J, Mench M, Müller I, Neu S, Puschenreiter M, Siebielec G, Vangronsveld J, Kidd PS. Microbial community structure and activity in trace element-contaminated soils phytomanaged by Gentle Remediation Options (GRO). ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2017;231:237-251. [PMID: 28802993 DOI: 10.1016/j.envpol.2017.07.097] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2016] [Revised: 07/28/2017] [Accepted: 07/28/2017] [Indexed: 06/07/2023]
37
Arshad A, Dalcin Martins P, Frank J, Jetten MSM, Op den Camp HJM, Welte CU. Mimicking microbial interactions under nitrate-reducing conditions in an anoxic bioreactor: enrichment of novel Nitrospirae bacteria distantly related to Thermodesulfovibrio. Environ Microbiol 2017;19:4965-4977. [PMID: 29105249 DOI: 10.1111/1462-2920.13977] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2017] [Revised: 10/26/2017] [Accepted: 10/28/2017] [Indexed: 11/29/2022]
38
Santana MM, Gonzalez JM, Cruz C. Nitric Oxide Accumulation: The Evolutionary Trigger for Phytopathogenesis. Front Microbiol 2017;8:1947. [PMID: 29067010 PMCID: PMC5641340 DOI: 10.3389/fmicb.2017.01947] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2017] [Accepted: 09/22/2017] [Indexed: 01/08/2023]  Open
39
Yang JA, Yang SH, Kim J, Kwon KK, Oh HM. Comparative genome analysis of the Flavobacteriales bacterium strain UJ101, isolated from the gut of Atergatis reticulatus. J Microbiol 2017;55:583-591. [PMID: 28664513 DOI: 10.1007/s12275-017-7172-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2017] [Revised: 06/07/2017] [Accepted: 06/19/2017] [Indexed: 12/19/2022]
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Reyes C, Schneider D, Lipka M, Thürmer A, Böttcher ME, Friedrich MW. Nitrogen Metabolism Genes from Temperate Marine Sediments. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2017;19:175-190. [PMID: 28283802 PMCID: PMC5405112 DOI: 10.1007/s10126-017-9741-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2016] [Accepted: 02/05/2017] [Indexed: 05/26/2023]
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Capturing Compositional Variation in Denitrifying Communities: a Multiple-Primer Approach That Includes Epsilonproteobacteria. Appl Environ Microbiol 2017;83:AEM.02753-16. [PMID: 28087525 DOI: 10.1128/aem.02753-16] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2016] [Accepted: 01/03/2017] [Indexed: 11/20/2022]  Open
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Lennon EFE, Houlton BZ. Coupled molecular and isotopic evidence for denitrifier controls over terrestrial nitrogen availability. THE ISME JOURNAL 2017;11:727-740. [PMID: 27935591 PMCID: PMC5322299 DOI: 10.1038/ismej.2016.147] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2016] [Revised: 09/09/2016] [Accepted: 09/16/2016] [Indexed: 11/08/2022]
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Lee JA, Francis CA. Spatiotemporal Characterization of San Francisco Bay Denitrifying Communities: a Comparison of nirK and nirS Diversity and Abundance. MICROBIAL ECOLOGY 2017;73:271-284. [PMID: 27709247 DOI: 10.1007/s00248-016-0865-y] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2016] [Accepted: 09/16/2016] [Indexed: 06/06/2023]
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Decleyre H, Heylen K, Tytgat B, Willems A. Erratum to: Highly diverse nirK genes comprise two major clades that harbour ammonium-producing denitrifiers. BMC Genomics 2016;17:527. [PMID: 27473854 PMCID: PMC4966868 DOI: 10.1186/s12864-016-2812-1] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
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