Transcriptome and key genes expression related to carbon fixation pathways in Chlorella PY-ZU1 cells and their growth under high concentrations of CO2

Improvement of cell growth in green algae Chlamydomonas reinhardtii through co-cultivation with yeast Saccharomyces cerevisiae

PURPOSE

CO2 fixation methods using green algae have attracted considerable attention because they can be applied for the fixation of dilute CO2 in the atmosphere. However, green algae generally exhibit low CO2 fixation efficiency under atmospheric conditions. Therefore, it is a challenge to improve the CO2 fixation efficiency of green algae under atmospheric conditions. Co-cultivation of certain microalgae with heterotrophic microorganisms can increase the growth potential of microalgae under atmospheric conditions. The objective of this study was to determine the culture conditions under which the growth potential of green algae Chlamydomonas reinhardtii is enhanced by co-culturing with the yeast Saccharomyces cerevisiae, and to identify the cause of the enhanced growth potential.

RESULTS

When C. reinhardtii and S. cerevisiae were co-cultured with an initial green algae to yeast inoculum ratio of 1:3, the cell concentration of C. reinhardtii reached 133 × 105 cells/mL on day 18 of culture, which was 1.5 times higher than that of the monoculture. Transcriptome analysis revealed that the expression levels of 363 green algae and 815 yeast genes were altered through co-cultivation. These included genes responsible for ammonium transport and CO2 enrichment mechanism in green algae and the genes responsible for glycolysis and stress responses in yeast.

CONCLUSION

We successfully increased C. reinhardtii growth potential by co-culturing it with S. cerevisiae. The main reasons for this are likely to be an increase in inorganic nitrogen available to green algae via yeast metabolism and an increase in energy available for green algae growth instead of CO2 enrichment.

De novo transcriptome and lipidome analysis of Desmodesmus abundans under model flue gas reveals adaptive changes after ten years of acclimation to high CO2

Microalgae's ability to mitigate flue gas is an attractive technology that can valorize gas components through biomass conversion. However, tolerance and growth must be ideal; therefore, acclimation strategies are suggested. Here, we compared the transcriptome and lipidome of Desmodesmus abundans strains acclimated to high CO2 (HCA) and low CO2 (LCA) under continuous supply of model flue gas (MFG) and incomplete culture medium (BG11-N-S). Initial growth and nitrogen consumption from MFG were superior in strain HCA, reaching maximum productivity a day before strain LCA. However, similar productivities were attained at the end of the run, probably because maximum photobioreactor capacity was reached. RNA-seq analysis during exponential growth resulted in 16,435 up-regulated and 4,219 down-regulated contigs in strain HCA compared to LCA. Most differentially expressed genes (DEGs) were related to nucleotides, amino acids, C fixation, central carbon metabolism, and proton pumps. In all pathways, a higher number of up-regulated contigs with a greater magnitude of change were observed in strain HCA. Also, cellular component GO terms of chloroplast and photosystems, N transporters, and secondary metabolic pathways of interest, such as starch and triacylglycerols (TG), exhibited this pattern. RT-qPCR confirmed N transporters expression. Lipidome analysis showed increased glycerophospholipids in strain HCA, while LCA exhibited glycerolipids. Cell structure and biomass composition also revealed strains differences. HCA possessed a thicker cell wall and presented a higher content of pigments, while LCA accumulated starch and lipids, validating transcriptome and lipidome data. Overall, results showed significant differences between strains, where characteristic features of adaptation and tolerance to high CO2 might be related to the capacity to maintain a higher flux of internal C, regulate intracellular acidification, active N transporters, and synthesis of essential macromolecules for photosynthetic growth.

Transcriptome analysis of the effects of different carbon dioxide concentrations on paramylon accumulation in Euglena gracilis Z

Appropriate concentration of carbon dioxide (CO2) will promote algae growth and metabolism. Building upon this finding, the present study investigated the impact of different CO2 concentrations (5% and 20%) on the carbon sequestration capacity of E. gracilis through aeration culturing, employing a combination of physiological analyses and transcriptome analysis. The results demonstrated that under 5% CO2 concentration, the cell density of E. gracilis was 1.79 times higher than that achieved in an air culture condition, and the paramylon content of E. gracilis was found to be 6.18 times higher than that of the air group. Based on transcriptome analysis, the carbon metabolism of E. gracilis was discussed. Significant up-regulation expression of genes associated with carbon synthesis was validated by an increase in paramylon content. This study revealed that under 5% CO2 conditions, E. gracilis exhibited elevated growth rate and enhanced photosynthetic carbon assimilation efficiency.

De novo biosynthesis of 2-hydroxyterephthalic acid, the monomer for high-performance hydroxyl modified PBO fiber, by enzymatic Kolbe-Schmitt reaction with CO2 fixation

BACKGROUND

High-performance poly(p-phenylenebenzobisoxazole) (PBO) fiber, with excellent mechanical properties (stiffness, strength, and toughness), high thermal stability combined and light weight, are widely employed in automotive and aerospace composites, body armor and sports goods. Hydroxyl modified PBO (HPBO) fiber shows better photostability and interfacial shear strength. 2-Hydroxyterephthalic acid (2-HTA), the monomer for the HPBO fiber, is usually synthesized by chemical method, which has poor space selectivity and high energy consumption. The enzymatic Kolbe-Schmitt reaction, which carboxylates phenolic substrates to generate hydroxybenzoic acids with bicarbonate/CO2, was applied in de novo biosynthesis of 2-HTA with CO2 fixation.

RESULTS

The biosynthesis of 2-HTA was achieved by the innovative application of hydroxybenzoic acid (de)carboxylases to carboxylation of 3-hydroxybenzoic acid (3-HBA) at the para-position of the benzene carboxyl group, known as enzymatic Kolbe-Schmitt reaction. 2,3-Dihydroxybenzoic acid decarboxylase from Aspergillus oryzae (2,3-DHBD_Ao) were expressed in recombinant E. coli and showed highest activity. The yield of 2-HTA was 108.97 ± 2.21 μg/L/mg protein in the whole-cell catalysis. In addition, two amino acid substitutions, F27G and T62A, proved to be of great help in improving 2,3-DHBD activity. The double site mutation F27G/T62A increased the production of 2-HTA in the whole-cell catalysis by 24.7-fold, reaching 2.69 ± 0.029 mg/L/mg protein. Moreover, de novo biosynthetic pathway of 2-HTA was constructed by co-expression of 2,3-DHBD_Ao and 3-hydroxybenzoate synthase Hyg5 in S. cerevisiae S288C with Ura3, Aro7 and Trp3 knockout. The engineered strain synthesized 45.40 ± 0.28 μg/L 2-HTA at 36 h in the CO2 environment.

CONCLUSIONS

De novo synthesis of 2-HTA has been achieved, using glucose as a raw material to generate shikimic acid, chorismic acid, and 3-HBA, and finally 2-HTA. We demonstrate the strong potential of hydroxybenzoate (de)carboxylase to produce terephthalic acid and its derivatives with CO2 fixation.

Transcriptional insights into Chlorella sp. ABC-001: a comparative study of carbon fixation and lipid synthesis under different CO2 conditions

BACKGROUND

Microalgae's low tolerance to high CO2 concentrations presents a significant challenge for its industrial application, especially when considering the utilization of industrial exhaust gas streams with high CO2 content-an economically and environmentally attractive option. Therefore, the objectives of this study were to investigate the metabolic changes in carbon fixation and lipid accumulation of microalgae under ambient air and high CO2 conditions, deepen our understanding of the molecular mechanisms driving these processes, and identify potential target genes for metabolic engineering in microalgae. To accomplish these goals, we conducted a transcriptomic analysis of the high CO2-tolerant strain, Chlorella sp. ABC-001, under two different carbon dioxide levels (ambient air and 10% CO2) and at various growth phases.

RESULTS

Cells cultivated with 10% CO2 exhibited significantly better growth and lipid accumulation rates, achieving up to 2.5-fold higher cell density and twice the lipid content by day 7. To understand the relationship between CO2 concentrations and phenotypes, transcriptomic analysis was conducted across different CO2 conditions and growth phases. According to the analysis of differentially expressed genes and gene ontology, Chlorella sp. ABC-001 exhibited the development of chloroplast organelles during the early exponential phase under high CO2 conditions, resulting in improved CO2 fixation and enhanced photosynthesis. Cobalamin-independent methionine synthase expression was also significantly elevated during the early growth stage, likely contributing to the methionine supply required for various metabolic activities and active proliferation. Conversely, the cells showed sustained repression of carbonic anhydrase and ferredoxin hydrogenase, involved in the carbon concentrating mechanism, throughout the cultivation period under high CO2 conditions. This study also delved into the transcriptomic profiles in the Calvin cycle, nitrogen reductase, and lipid synthesis. Particularly, Chlorella sp. ABC-001 showed high expression levels of genes involved in lipid synthesis, such as glycerol-3-phosphate dehydrogenase and phospholipid-diacylglycerol acyltransferase. These findings suggest potential targets for metabolic engineering aimed at enhancing lipid production in microalgae.

CONCLUSIONS

We expect that our findings will help understand the carbon concentrating mechanism, photosynthesis, nitrogen assimilation, and lipid accumulation metabolisms of green algae according to CO2 concentrations. This study also provides insights into systems metabolic engineering of microalgae for improved performance in the future.

Phenol phycoremediation by Haematococcus pluvialis coupled with enhanced astaxanthin and lipid production under rac-GR24 supplementation for enhanced biodiesel production

The present study evaluated the impact of rac-GR24 on biomass and astaxanthin production under phenol stress coupled with biodiesel recovery from Haematococcus pluvialis. Phenol supplementation showed negative impact on growth, where the lowest biomass productivity of 0.027 g L^-1 day^-1 was recorded at 10 µM phenol, while 0.4 µM rac-GR24 supplementation showed the highest recorded biomass productivity of 0.063 g L^-1 day^-1. Coupling 0.4 µM rac-GR24 at different phenol concentrations confirmed the potential of rac-GR24 to mitigate the toxic effect of phenol by enhancing yield of PSII yield, RuBISCo activity, and antioxidant efficiency, which resulted in improved phenol phycoremediation efficiency. In addition, results suggested a synergistic action by rac-GR24 supplementation under phenol treatment where rac-GR24 enhanced lipid accumulation, while phenol enhanced astaxanthin production. Dual supplementation of rac-GR24 and phenol showed the highest recorded FAMEs content, which was 32.6% higher than the control, with improved biodiesel quality. The suggested approach could enhance the economic feasibility of triple-purpose application of microalgae in wastewater treatment, astaxanthin recovery, and biodiesel production.

Antagonism toxicity of CuO nanoparticles and mild ocean acidification to marine algae

The toxicity of CuO nanoparticles (NPs) to marine microalgae (Emiliania huxleyi) under ocean acidification (OA) conditions (pHs 8.10, 7.90, 7.50) was investigated. CuO NPs (5.0 mg/L) caused significant toxicity (e.g., 48-h growth inhibition, 20%) under normal pH (8.10), and severe OA (pH 7.50) increased the toxicity of CuO NPs (e.g., 48-h growth inhibition, 68%). However, toxicity antagonism was observed with a growth inhibition (48 h) decreased to 37% after co-exposure to CuO NPs and mild OA (pH 7.90), which was attributed to the released Cu²⁺ ions from CuO NPs. Based on biological responses as obtained from RNA-sequencing, the dissolved Cu²⁺ ions (0.078 mg/L) under mild OA were found to increase algae division (by 17%) and photosynthesis (by 28%) through accelerating photosynthetic electron transport and promoting ATP synthesis. In addition, mild OA enhanced EPS secretion by 41% and further increased bioavailable Cu²⁺ ions, thus mitigating OA-induced toxicity. In addition, excess Cu²⁺ ions could be transformed into less toxic Cu₂S and Cu₂O based on X-ray absorption near-edge spectroscopy (XANES) and high-resolution transmission electron microscopy (HR-TEM), which could additionally regulate the antagonism effect of CuO NPs and mild OA. The information advances our knowledge in nanotoxicity to marine organisms under global climate change.

Analysis of photosynthetic pigments pathway produced by CO2-toxicity-induced Scenedesmus obliquus

The coal-to-gas process produces carbon dioxide, which increases global warming, and its wastewater treatment generates sludge with high organic toxicity. Scenedesmus obliquus is a potential solution to such environmental problems, and photosynthetic pigments are the focus of this study. The optimal concentration of CO₂ for the growth of Scenedesmus obliquus was found to be 30 % after increasing the concentration of CO₂ (0.05 %-100 %). The accumulation of photosynthetic pigments during cultivation could reach 31.74 ± 1.33 mg/L, 11.21 ± 0.42 mg/L, and 5.59 ± 0.19 mg/L respectively, and the organic toxicity of sludge extract could be reduced by 44.97 %. Upregulation of A0A383VSL5, A0A383WMQ3, and A0A2Z4THB7 as photo systemic oxygen release proteins and propylene phosphate isomerase resulted in oxygen-evolving proteins in photosystem II, electron transport in photosystem I, and intermediates in carbon fixation. This is achieved by increasing the intracellular antennae protein and carbon fixation pathway, allowing Scenedesmus obliquus to both tolerate and fix CO₂ and reduce the organic toxicity of sludge. These findings provide insights into the innovative strategy underlining the fixation of CO₂, treatment and disposal of industrial residual sludge, and the enhancement of microalgal biomass production.

The effects of acetate and glucose on carbon fixation and carbon utilization in mixotrophy of Haematococcus pluvialis

The culture method using sodium acetate and glucose, widely used as organic carbon sources in the mixotrophy of Haematococcus pluvialis, was compared with its autotrophy. In the 12-day culture, mixotrophy using sodium acetate and glucose increased by 40.4% and 77.1%, respectively, compared to autotrophy, but the mechanisms for the increasing biomass were different. The analysis of the mechanism was divided into autotrophic and heterotrophic metabolism. The mixotrophy with glucose increased the biomass by directly supplying the substrate and ATP to the TCA cycle while inhibiting photosynthesis. Gene expressions related to glycolysis and carbon fixation pathway were confirmed in autotrophy and mixotrophy with glucose and acetate. The metabolism predicted in the mixotrophy with acetate and glucose was proposed via autotrophic and heterotrophic metabolism analysis. The mechanism of Haematococcus pluvialis under mixotrophic conditions with high CO₂ concentration was confirmed through this study.

CO2 bio-mitigation using genetically modified algae and biofuel production towards a carbon net-zero society

CO₂ sequestration carried by biological methodologies shows enhanced potential and has the advantage that biomass produced from the captured CO₂ can be used for different applications. Bio-mitigation of carbons through a micro-algal system addresses a promising and feasible option. This review mostly focused on the role of algae, particular mechanisms, bioreactors in algae cultivation, and genetically modified algae in CO₂ fixation and energy generation systems. A combination of CO₂ bio-mitigation and biofuel production might deliver an extremely promising alternative to current CO₂ mitigation systems. Bio mitigation in which the excess carbon is captured and bio fixation which the carbon is captured by algae or autotrophs and used for producing biofuel. This review revealed that steps for biofuel production from algae include factors affecting, harvesting techniques, oil extraction and transesterification. This review helps environmentalists and researchers to assess the effect of algae-based biorefinery on the green environment.

Multiscale modelling of mixotrophic algal growth in pilot-scale photobioreactors and its application to microalgal cultivation using wastewater

This multiscale model quantifies transport and reaction processes in mixotrophic microalgal growth at three characteristic length scales, namely, macro (photobioreactor), meso (algal cell), micro (organelles). The macro and the meso scale equations capture the temporal dynamics of the transport of CO₂, O₂, H⁺, organic carbon and nitrogen sources in the photobioreactor and the cell, respectively, while the micro scale quantifies the reaction rates of CO₂ fixation and photorespiration in the chloroplast, and mitochondrial respiration. Our model is validated using our experiments (R² = 0.96-0.99) on urea, CO₂ (0.04-5%), and acetic acid-mediated mixotrophic cultivation of Chlorella sorokiniana for 138 h using municipal wastewater (with and without media) at 11,000 lx light in 25-liter pilot-scale bubble-column photobioreactors, which produces 0.47-2.74 g/L biomass with 22.8-29.6% lipids, while reducing the COD, ammonium, phosphate, nickel, and H⁺ concentrations by 65-89%. The alga assimilates the ammonium and the phosphates present in wastewater into amino acids and ATP, respectively. Our simulations quantify the autotrophic and heterotrophic components of mixotrophic biomass yield to find the optimal inlet CO₂ concentration (of 3%) that synergizes autotrophic CO₂ sequestration with heterotrophic assimilation of organic carbon, thereby maximizing both autotrophic and heterotrophic growths. Super-optimal levels of inlet CO₂ acidify the stroma of the chloroplast, inhibit RuBisCo's enzymatic activity for CO₂ fixation in the Calvin Cycle, decelerate carrier-mediated uptake of acetate, and reduce biomass yields. Our harvesting process drastically reduces the algal harvesting time to less than 29 min. This multiscale reaction-transport model provides a useful tool for further scaling up this pilot-scale technology that synergistically integrates CO₂ sequestration and wastewater treatment with rapid microalgal cultivation (using municipal wastewater without autoclaving) and cost-effective harvesting.

Time-resolved transcriptome analysis of Scenedesmus obliquus HTB1 under 10% CO2 condition

Certain microalgal species can grow under high CO₂ concentrations providing potential for mitigating CO₂ pollution in flue gas produced by power plants. Microalga Scenedesmus obliquus strain HTB1 was isolated from the Chesapeake Bay and grow rapidly in a high level of CO₂ . However, little is known about the molecular responses of HTB1 to high CO₂ levels. Here, we investigated how HTB1 responds to 10% CO₂ using the time-resolved transcriptome analysis. Gene expression profiles indicated that HTB1 responds quickly (in 2 h) and becomes adaptive within 12 h when exposed to 10% CO₂ . Interestingly, certain genes of light-harvesting, chlorophyll synthesis and carbon fixation (i.e. rbcS) were up-regulated at 10% CO₂ , and these functional responses are consistent with the increased photosynthesis efficiency and algal biomass under 10% CO₂ . Nitrate assimilation was strongly enhanced, with amino acid biosynthesis and aminoacyl tRNA biosynthesis genes being markedly up-regulated, indicating that HTB1 actively takes up nitrogen and accelerates protein synthesis at 10% CO₂ . Carbon metabolism including fatty acid biosynthesis and TCA cycle was enhanced at 10% CO₂ , supporting the earlier observation of increased lipid content of Scenedesmus sp. under high CO₂ levels. Interestingly, key genes like RuBisCO (rbcL) and carbonic anhydrase in carboxysomes did not respond actively to 10% CO₂ , implying that exposure to 10% CO₂ has little impact on the carbon concentrating mechanisms and CO₂ fixation of the Calvin cycle. It appears that HTB1 can grow rapidly at 10% CO₂ without significant metabolic changes in carbon fixation and ATP synthesis.

Supplementation with rac-GR24 Facilitates the Accumulation of Biomass and Astaxanthin in Two Successive Stages of Haematococcus pluvialis Cultivation

The unicellular freshwater green alga Haematococcus pluvialis has attracted much research attention due to its biosynthetic ability for large amounts of astaxanthin, a blood-red ketocarotenoid that is used in cosmetics, nutraceuticals, and pharmaceuticals. Recently, numerous studies have investigated the functions of natural astaxanthin; however, the high cost of the production of astaxanthin from H. pluvialis cultures restricts its commercial viability. There is an urgent need to fulfill commercial demands by increasing astaxanthin accumulation from H. pluvialis cultures. In this study, we discovered that treatment of H. pluvialis cultures at the beginning of the macrozooid stage (day 0) with 1 μM rac-GR24, a synthetic analogue of strigolactones (a class of phytohormones), led to significant increases in biomass [up to a maximum dry cell weight (DCW) of 0.53 g/L] during the macrozooid stage and astaxanthin (from 0.63 to 5.32% of DCW) during the hematocyst stage. We elucidated that this enhancement of biomass accumulation during the macrozooid stage by rac-GR24 is due to its increasing CO₂ utilization efficiency in photosynthesis and carbohydrate biosynthesis. We also found that rac-GR24 stimulated the overproduction of nicotinamide adenine dinucleotide phosphate (NADPH) and antioxidant enzymes in H. pluvialis cultures, which alleviated the oxidative damage caused by reactive oxygen species generated during the hematocyst stage due to the exhaustion of nitrogen supplies. Moreover, rac-GR24 treatment of H. pluvialis synergistically altered the activity of the pathways of fatty acid biosynthesis and astaxanthin esterification, which resulted in larger amounts of astaxanthin being generated by rac-GR24-treated cultures than by controls. In summary, we have developed a feasible and economic rac-GR24-assisted strategy that increases the amounts of biomass and astaxanthin generated by H. pluvialis cultures, and have provided novel insights into the mechanistic roles of rac-GR24 to achieve these effects.

Combined effect of CO2 concentration and low-cost urea repletion/starvation in Chlorella vulgaris for ameliorating growth metrics, total and non-polar lipid accumulation and fatty acid composition

Different CO₂ concentration such as 0.03, 5, 10 and 15% and low-cost urea repletion/starvation in Chlorella vulgaris on growth, total and non-polar lipid content and fatty acid composition was studied. Chlorella vulgaris grown at 0.03% CO₂ apparently revealed inferior biomass yield 0.55 g/L on 14th day compared to CO₂ supplemented cells. In the case of CO₂ supply, 15% CO₂ has unveiled higher biomass yield at about 1.83 g/L on day 12 whereas biomass yield for 5 and 10% CO₂ supplemented cells was 1.61 and 1.73 g/L, respectively on 12th day of cultivation. The biomass productivity (g) per liter per day was 32 mg in control condition whereas it was 125, 134 and 144 mg/L/d in 5, 10 and 15% CO₂ supplied cells, respectively. Lipid content of the strain grown at control, 5, 10 and 15% CO₂ was 21.2, 22.1, 23.4 and 24.6%, respectively and however, without CO₂ addition in low-cost urea repleted and urea depleted medium grown cells revealed 21.2 and 24.2%, respectively. Interestingly, strain grown at 15% CO₂ supply in urea deplete medium yielded 28.7% lipid and contribution of non-polar lipids in total lipids is 69.7%. Further, the fatty acid composition of the strain grown in 15% CO₂ supply in urea depleted medium showed C16:0, C16:1, C18:1 and C18:3 in the level of 30.12, 9.98, 23.43, and 11.97%, respectively compared to control and urea amended condition.

Resourceful treatment of harsh high-nitrogen rare earth element tailings (REEs) wastewater by carbonate activated Chlorococcum sp. microalgae

The discharge of rare earth element (REE) tailings wastewater results in serious ecological deterioration and health risk, due to high ammonia nitrogen, and strong acidity. The low C/N ratio makes it recalcitrant to biodegradation. Recently it has been shown that microalgal technology has a promising potential for the simultaneous harsh wastewater treatment and resource recovery. However, the low nitrogen removal rate and less biomass of microalgae restricted its development. In this work, Chlorococcum sp. was successfully isolated from the rare earth mine effluent. The microalgae was capable of enhancing nitrogen contaminants removal from REEs wastewater due to the carbonate addition, which simulated the activity increase of carbonic anhydrase (CA). The total inorganic nitrogen (TIN) removal rate reached 4.45 mg/L h^-1, which compared to other microalgal species, the nitrogen removal rate and biomass yield were 7.8- and 4.9-fold higher, respectively. Notably, high lipid contents (mainly triglycerides, 43.85% of dry weight) and a high biomass yield were obtained. Meanwhile, the microalgae had an excellent settleability attributed to higher extracellular polymeric substance (EPS) formation, leading to easier resource harvest. These results were further confirmed in a continuous-flow photobioreactor with a stable operation for more than 30 days, indicating its potential for application.

Screening and application of Chlorella strains on biosequestration of the power plant exhaust gas evolutions of biomass growth and accumulation of toxic agents

To use microalgae for the biosequestration of carbon dioxide (CO₂) emitted from the coal-fired power plants, the screening of high CO₂ tolerant microalgae and their accumulation of toxic agents have attracted significant research attention. This study evaluated 10 Chlorella strains for high CO₂ tolerance using combined growth rates and growth periods subjected to logistic parameters. We selected LAMB 31 with high r (0.89 ± 0.10 day^-1), high k (6.51 ± 0.19), and medium Tp (5.17 ± 0.15 day) as a candidate for CO₂ biosequestration. Correspondingly, six genes involving carbon fixation and metabolism processes were upregulated in LAMB 31 under high CO₂ conditions, verifying its high CO₂ tolerant ability. LAMB 31 cultures exposed to exhaust gas of power plant under different flow rates grew well, but the high flow rate (0.6 L/h) showed inhibition effects compared with low flow rates (0.2 and 0.3 L/h) at the end of the culturing period. The toxic agents in the exhaust gas including sulfur, arsenic, and mercury accumulated in LAMB 31 biomass but were deemed safe for use in the production of both human food and animal feed based on the National Food Safety Standard in China. This study showed a complete process involving high CO₂ tolerant microalgae screening, high CO₂ tolerant verification, and in situ application in a power plant. Data results provide valuable information as the basis for future research studies in microalgae application on CO₂ mitigation at emission sources.

The responses of harmful dinoflagellate Karenia mikimotoi to simulated ocean acidification at the transcriptional level

The HAB-forming, toxic dinoflagellate Karenia mikimotoi, previously found to benefit from ocean acidification (OA), was cultivated to investigate its transcriptional response to simulated OA for 30 generations. Batch cultures were grown under two CO₂ concentrations, 450 (control) and 1100 (simulated OA) μatm, and physiological parameters [growth, pigments, catalase (CAT), glutathione reductase (GR), and superoxide dismutase (SOD) activity], as well as transcriptomes (obtained via RNA-seq), were compared. Chlorophyll a (Chl a) and carotenoid (Caro) contents, as well as CAT and GR activities, were significantly increased under OA conditions. Transcriptomic analysis revealed 2,490 differentially expressed unigenes in response to OA, which comprised 1.54% of all unigenes. A total of 1,121 unigenes were upregulated, and 1,369 unigenes were downregulated in OA compared to control conditions. The downregulated expression of bicarbonate transporter and carbonic anhydrase genes was a landmark of OA acclimation. Key genes involved in energy metabolism, e.g., photosynthesis, tricarboxylic acid cycle, oxidative phosphorylation, and nitrogen metabolism, were highly upregulated under OA, contributing to increases in the Chl a (55.05%) and Caro (28.37%). The enhanced antioxidant enzyme activities (i.e. CAT, GR) and upregulated genes (i.e. glutathione peroxidase, ascorbate peroxidase, heat shock protein, 20S proteasome, aldehyde dehydrogenase, and apolipoprotein) benefit cells against the potential lower pH stress condition under OA. In addition, the downregulation of four genes associated with motility suggested that the preserved energy could further boost growth. In conclusion, the present study suggests that K. mikimotoi exhibits efficient gene expression regulation for the utilization of energy and resistance to OA-induced stress. Taken together, K. mikimotoi appeared as a tolerant species in response to OA. Thus, more extensive algal blooms that threaten marine organisms are likely in the future. These findings expand current knowledge on the gene expression of HAB-forming species in response to future OA.

Performance intensification of CO2 absorption and microalgae conversion (CAMC) hybrid system via low temperature plasma (LTP) treatment

CO₂ absorption and microalgae conversion (CAMC) hybrid system is a promising alternative for simultaneous carbon capture and utilization. It can not only overcome the challenge of high energy consumption solvent thermal regeneration in chemical CO₂ absorption, but also enhance the carbon conversion efficiency in biological conversion process. However, the discordance between CO₂ absorption and bio-conversion rate has become the key to limiting the development of CAMC system. Therefore, in this study, low temperature plasma (LTP) mutation breeding technology was used to training Chlorella strains by combining undirected mutagenesis and directional screening. Then, the mutagenic microalgae were cultivated and evaluated in CAMC system. It was found that compared with original Chlorella L166, the OD₆₈₀ of mutant strain L166-M₃ in CAMC system increased 7.8%, and the maximum specific growth rate improved 27.5%. The carbon sequestration rate of wild Chlorella L166 increased from 82.9% to 93.7% after mutation treatment, the activity of RubisCO, and the content of NADPH produced by photoreaction increased 37.2% and 17.2%. In addition, lipid production of L166-M₃ increased to 6.89 mg/L, which was 15.4% higher than original Chlorella L166. It could be observed that LTP mutation breeding could be used as a potential method for training algae species and improve the overall performance of CAMC system.

Enhanced biomass production through a repeated sequential auto-and heterotrophic culture mode in Chlorella protothecoides

A repeated sequential auto-and heterotrophic (RSAH) culture mode was designed to enhancebiomass ofChlorella protothecoides. Based on the result that the photosynthesis system may receive damage if the light period is more than 16 h, autotrophy was applied in the 16 h of the light cycle and mixotrophy using acetic acid and glucose in the 8 h of dark cycle. In the dark cycle, an organic carbon source was added according to the Monod equation to maintain activation of the TCA cycle and organic carbon source-to-cell conversion. When acetic acid and glucose were used as organic carbon sources, this culture method was found to be 32.3% and 12.6% higher in biomass, 2.59 and 2.67 times higher in the organic carbon source-to-cell conversion factor, and 2.17 and 2.32 times higher in ATP/ADP ratio, respectively, compared to mixotrophy. Through this new culture method, economic feasibility and carbon reduction capabilities in large-scale cultures can be achieved.

Chlorella vulgaris cultivation in simulated wastewater for the biomass production, nutrients removal and CO2 fixation simultaneously

Chlorella vulgaris (C. vulgaris) was promising microalgae to simultaneously achieve biomass production, carbon dioxide (CO₂) fixation, nutrients removal and proteins production especially under different conditions of CO₂ gas and wastewaters. Results presented that maximal specific growth rate of C. vulgaris was 0.21-0.35 d^-1 and 0.33-0.43 d^-1 at 0.038% and 10% CO₂ respectively, and corresponding maximal CO₂ fixation rate was attended with 4.51-14.26 and 56.26-85.72 mg CO₂·L^-1·d^-1. C. vulgaris showed good wastewater removal efficiency of nitrogen and phosphorus at 10% CO₂ with 96.12%-99.61% removal rates. Nitrogen fixation amount achieved 41.86 mg L^-1 when the initial NH₄Cl concentration was set at 60 mg L^-1 at 10% CO₂. Improved total protein (25.01-365.49 mg) and amino acids (24.56-196.44 mg) contents of C. vulgaris biomass was observed with the increasing of added CO₂ and ammonium concentrations. Moreover, the developed kinetic function of C. vulgaris growth depends on both phosphorus quota and nitrogen quota with correlation coefficient (R²) ranged from 0.68 to 0.97. Computed maximal consumed nutrients concentrations (ΔC_max) based on Logistic function are positively related to initial NH₄⁺-N concentrations, which indicated that adding ammonium could stimulate the utilization of both phosphorus and nitrogen.

The molecular mechanisms of Chlorella sp. responding to high CO2: A study based on comparative transcriptome analysis between strains with high- and low-CO2 tolerance

High CO₂ acclimation for microalgae has attracted large research attention owing to the usefulness of microalgae in bio-sequestration of CO₂ from the emission source. In this study, one high CO₂ tolerant (LAMB 31) and non-tolerant (LAMB 122) Chlorella sp. strains were transferred from air to 40% CO₂, during which four time points were chosen for comparative transcriptome analysis. Gene changes started in the lag phase (T1) of population growth with more genes (7889) upregulated in LAMB 31 than in LAMB 122 (1092). Further function enrichments indicated: In LAMB 31, up-regulation of genes in cyclic electron transportation, F-type ATPase and Calvin cycle were associated with the enhancement of carbon fixation abilities; upregulation of genes in phosphorylation together with V-ATPase, which contributed to cytoplasmatic pH stability; Lastly, enhancement of carbon metabolisms including TCA cycle and glycolysis accelerated the consumption of cellular organic carbon. Most of the genes in these pathways and processes showed downregulation in LAMB 122. This study disclosed the most complete transcriptional molecular mechanisms of Chlorella sp. responding to high CO₂ by combining CO₂ fixation, transportation, and metabolic processes. The results provided valuable genetic information for future screening and breeding of microalgae with high-CO₂ tolerance for more efficient CO₂ bio-sequestration.

Mechanism analysis for the process-dependent driven mode of NaHCO3 in algal antibiotic removal: efficiency, degradation pathway and metabolic response

This work provided a comprehensive perspective to investigate the performance of NaHCO₃-driving effect and mechanism including the antibiotic removal, degradation pathway and metabolites analysis, and the algal physiological response during the removal process. Cefuroxime sodium was selected as the target antibiotic. Our results showed that NaHCO₃ did not facilitate self-decomposition of the target antibiotic, while drove the improvement on the removal capacity of every algal cell, which then attributed to the total removal efficiency. After 24 h, there was an improvement on the removal rate of the target antibiotic (from 10.21% to 92.89%) when NaHCO₃ was added. The degradation pathway of the target antibiotic was confirmed by the formation of three main products (M1, M2 and M3), and the degradation process, that from M1 to M2 and M2 to M3, was accelerated by the existence of NaHCO₃. Besides, a 4-stage model illustrated the relationship between NaHCO₃ and antibiotic removal process. Moreover, algal culture that supplemented with NaHCO₃ demonstrated a better growth capacity. A large increase in the content of chlorophyll a and a moderate increase in the activity of two carbon metabolic enzymes (RuBisCO and CA) might be viewed as a positive response of the algae during the NaHCO₃-driving process.

Using polyethylene glycol to promote Nannochloropsis oceanica growth with 15 vol% CO2

CO₂ capture with microalgae has been put forward in response to global concern on greenhouse gas emission. However, the short residence time and slow diffusion of CO₂ in water limits the growth of microalgae. In order to improve CO₂ transfer from gas phase to liquid phase and utilization by algal cells, polyethylene glycol 200 (PEG 200) was used as CO₂ absorbent to promote growth of Nannochloropsis oceanica with the bubbling of 15 vol% CO₂. Total inorganic carbon (TIC) absorbed in culture medium remained constant at 5.6 mM when 15 vol% CO₂ was bubbled continuously. PEG 200 in the medium provided additional CO₂ absorption from 0.6 to 4.8 mM when PEG 200 concentration increased from 0.5 to 4 mM. The specific growth rate of N. oceanica reached the maximum (1.41 d^-1) with 1 mM PEG 200 in culture medium, which was 21.5% higher than the specific growth rate without PEG 200. About 79% of the increase in biomass was attributed to the increased TIC with more CO₂ dissolution in culture medium because of PEG 200, and about 21% was attributed to PEG 200 itself utilized as an organic carbon source. In conclusion, PEG 200 as a CO₂ absorbent can effectively capture flue-gas CO₂ for algal growth.

Transcriptional analyses reveal the molecular mechanism governing shade tolerance in the invasive plant Solidago canadensis

Solidago canadensis is an invasive plant that is capable of adapting to variable light conditions. To elucidate the shade tolerance mechanism in S. canadensis at the molecular level, transcriptome analyses were performed for leaves growing under natural light and three shade level conditions. Many differentially expressed genes (DEGs) were found in the comparative analysis, including those involved in photosynthesis, antioxidant, and secondary metabolism of phenol- and flavonoid-related pathways. Most genes encoding proteins involved in photosynthesis, such as photosystem I reaction center subunit (Psa), photosystem II core complex protein (Psb), and light-harvesting chlorophyll protein (Lhca and Lhcb), and reactive oxygen species (ROS) scavenging-related enzymes, such as superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT), were upregulated with the shade levels. Furthermore, most of the DEGs related to secondary metabolite synthesis were also upregulated in the shade conditions. Our study indicates that S. canadensis can respond to shade stress by modulating the expression of several photosynthesis-related, free radical scavenging-related, and secondary metabolism-related genes; thus, this species has the ability to adapt to different light conditions.

Stabilized and Immobilized Carbonic Anhydrase on Electrospun Nanofibers for Enzymatic CO2 Conversion and Utilization in Expedited Microalgal Growth

Carbonic anhydrases convert CO₂ to bicarbonate at a high turnover rate up to 10⁶ s^-1, but their actual applications in CO₂ conversion processes are hampered by their poor stability. This study reports highly loaded and stabilized bovine carbonic anhydrase (bCA) upon being immobilized onto electrospun polymer nanofibers in the form of enzyme precipitate coating (EPC). The EPC protocol, consisting of enzyme covalent attachment, precipitation, and cross-linking, maintained 65.3% of initial activity even after being incubated in aqueous solution at room temperature under shaking at 200 rpm for 868 days. EPC also showed strong resistance to the treatment of the metal chelation agent, ethylenediaminetetraacetic acid, and molecular dynamic simulation was carried out to elucidate the prevention of metal leaching from the active site of bCA upon being cross-linked in the form of EPC. Highly stable EPC with high bCA loading was employed for the conversion of bubbling CO₂ to bicarbonate, and the bicarbonate solution was utilized as a carbon source for expedited microalgae growth in a separate bioreactor. The addition of EPC in the bubbling CO₂ reactor resulted in 134 and 231% accelerated microalgae growths compared to the controls with and without 25 mM sodium bicarbonate, respectively. EPC with high enzyme loading and unprecedentedly successful stabilization of enzyme stability has a great potential to be used for the development of various enzyme-mediated CO₂ conversion and utilization technologies.

Modification and improvement of microalgae strains for strengthening CO2 fixation from coal-fired flue gas in power plants

Biological CO₂ capture using microalgae is a promising new method for reducing CO₂ emission of coal-fired flue gas. The strain of microalgae used in this process plays a vital role in determining the rate of CO₂ fixation and characteristics of biomass production. High requirements are put forward for algae strains due to high CO₂ concentration and diverse pollutants in flue gas. CO₂ can directly diffuse into the cytoplasm of cells by extra- and intracellular CO₂ osmotic pressure under high CO₂ concentrations. The flue gas pollutants, such as SO_x, NO_x and fly ashes, have negative effects on the growth of microalgae. This work reviewed the state-of-the-art advances on microalgae strains used for CO₂ fixation, focusing on the modification and improvement of strains that are used for coal-fired flue gas. Methods such as genetic engineering, random mutagenesis, and adaptive evolution have the potential to facilitate photosynthesis, improve growth rate and reduce CO₂ emission.

Bio-fixation of flue gas from thermal power plants with algal biomass: Overview and research perspectives

Rate of energy production is reflecting growth of nations and most of energy produced from the coal and natural gas-based thermal power plants (TPPs). Flue gas (point sources of emission) are main exhaustible form of gases that come from thermal power plants and are continuously promoting climate change and various environmental problems in global scenario. The present available technologies of flue gas treatment are energy and cost-intensive process. Among the available techniques for fixation of flue-gases at sustainable part, microalgal bio-fixation of flue gas is an alternative promising and competent technology with assurance of eco-friendly path of low energy and low-cost solution for pollution abetment with production of value added products. According to mechanism involves during photosynthetic process of microalgae, it utilizes atmospheric CO₂ and CO₂ from flue gases for their growth. Past, present and future treatment technologies for flue gas with their challenges are discussed. Recent experimental studies and commercially available bioreactors are very particular for bio-fixation of flue gas from thermal power plants are also reviewed with their future perspectives. The commercial viability of process with specific microalgal strains and utilized biomass for further value-added products are suggested with future limitations.

Transcriptome sequencing of a toxic dinoflagellate, Karenia mikimotoi subjected to stress from solar ultraviolet radiation

Solar ultraviolet radiation (UVR) is a stress factor in aquatic environments and may act directly or indirectly on orgnisms in the upper layers of the water column. However, UVR effects are usually species-specific and difficult to extrapolate. Here we use the HAB-forming, toxic dinoflagellate Karenia mikimotoi (which was found to be relatively resistant in previous studies) to investigate its transcriptional responses to a one-week UVR exposure. For this, batch cultures of K. mikimotoi were grown with and without UVR, and their transcriptomes (generated via RNAseq technology) were compared. RNA-seq generated 45.31 million reads, which were further assembled to 202600 unigenes (>300bp). Among these, ca. 61% were annotated with NCBI, NR, GO, KOG, PFAM, Swiss-Prot, and KEGG database. Transcriptomic analysis revealed 722 differentially expressed unigenes (DEGs, defined as being within a |log2 fold change| ≥ 2 and padj < 0.05) responding to solar UVR, which were only 0.36% of all unigenes. 716 unigenes were down-regulated, and only 6 unigenes were up-regulated in the UVR compared to non-UVR treatment. KEGG pathway further analysis revealed DEGs were involved in the different pathway; genes involved in the ribosome, endocytosis and steroid biosynthesis pathways were highly down-regulated, but this was not the case for those involved in the energy metabolisms (including photosynthesis, oxidative phosphorylation) which may contribute to the sustainable growth observed in UVR treatment. The up-regulated expression of both zinc-finger proteins (ZFPs) and ribosomal protein L11 (RPL11) may be one of the acclimated mechanisms against UVR. In addition, this work identified down-regulated genes involved in fatty acid degradation and the hydrophobic branched chain amino acids (e.g., Valine, leucine, and isoleucine), which act as structural components of cell membranes modulating lipid homeostasis or turnover. In conclusion, the present study suggests that the toxic dinoflagellate K. mikimotoi has limited transcriptomic regulation but confirms that it appears as a tolerant species in response to solar UVR. These findings expand current knowledge of gene expression in HAB-forming species in response to natural environment factors such as solar radiation.

Characterization and optimization of endogenous lipid accumulation in Chlorella vulgaris SDEC-3M ability to rapidly accumulate lipid for reversing nightly lipid loss

BACKGROUND

During inevitable light/dark cycle, lipid productivity of outdoor microalgae photoautotrophic cultivation is lowered by nightly biomass and lipid loss. To minimize, or even reverse the nightly lipid loss, it was expected that lipid accumulation would not cease, even if at night. Without relying on photosynthesis and organic matter in media, endogenous lipid accumulation that consumes energy and carbon sources derived from cells themselves, namely endogenous accumulation, is the only way for lipid production. The main aims of the present study was to characteristic endogenously accumulated lipid, confirm feasibility to reverse nightly lipid loss, and determine optimal conditions and its quality suitability for biodiesel feedstock production under stress conditions.

RESULTS

Chlorella vulgaris SDEC-3M ability to rapidly accumulated lipid under stress conditions was cultivated for 12 h in darkness, and the effects of various conditions on lipid accumulation and biomass loss were analyzed. Under non-stress conditions, lipid contents dropped. Under certain stress conditions, conversely, the lipid contents were substantially improved so that net nightly endogenous lipid accumulation was observed. Under the optimal conditions (aeration mode with 0.10 vvm and 15% CO₂, 5-10 mg L^-1 of NO₃ ^--N, 30-35 °C, approximate 2500 mg L^-1 of biomass), the lipid content was doubled and increased lipid was approximately 180 mg L^-1. Among stress conditions, N-deficiency had the most significant effect on endogenous lipid accumulation, and the optimum results were characterized under relatively low-N concentrations. Higher consistency between loss in carbohydrate and gain in lipid confirmed accumulated lipid endogenously conversed from carbohydrate. Based on the analyses of fatty acids profiles and prediction of kinematic viscosity, specific gravity, cloud point, cetane number and iodine value, it was confirmed that the quality of lipid obtained under optimal conditions complied with biodiesel quality standards.

CONCLUSION

Via triggering endogenous lipid accumulation by stress conditions, even in darkness, SDEC-3M can synthesize enough lipid suitable for biodiesel feedstock. It implies that the lipid accumulation phase in two-phase strategy can be scheduled at night, and following biomass production stage in light, which should be a solution to improve the lipid yield and quality of large-scale outdoor photoautotrophic microalgae cultivation for biodiesel production.

Exploring stress tolerance mechanism of evolved freshwater strain Chlorella sp. S30 under 30 g/L salt

Enhancement of stress tolerance to high concentration of salt and CO₂ is beneficial for CO₂ capture by microalgae. Adaptive evolution was performed for improving the tolerance of a freshwater strain, Chlorella sp. AE10, to 30 g/L salt. A resulting strain denoted as Chlorella sp. S30 was obtained after 46 cycles (138 days). The stress tolerance mechanism was analyzed by comparative transcriptomic analysis. Although the evolved strain could tolerate 30 g/L salt, high salinity caused loss to photosynthesis, oxidative phosphorylation, fatty acid biosynthesis and tyrosine metabolism. The related genes of antioxidant enzymes, CO₂ fixation, amino acid biosynthesis, central carbon metabolism and ABC transporter proteins were up-regulated. Besides the up-regulation of several genes in Calvin-Benson cycle, they were also identified in C4 photosynthetic pathway and crassulacean acid metabolism pathway. They were essential for the survival and CO₂ fixation of Chlorella sp. S30 under 30 g/L salt and 10% CO₂.