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Hernández-Ospina DA, Osorio-González CS, Miri S, Kaur Brar S. New perspectives on the anaerobic degradation of BTEX: Mechanisms, pathways, and intermediates. CHEMOSPHERE 2024; 361:142490. [PMID: 38821131 DOI: 10.1016/j.chemosphere.2024.142490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Revised: 05/27/2024] [Accepted: 05/29/2024] [Indexed: 06/02/2024]
Abstract
Aromatic hydrocarbons like benzene, toluene, xylene, and ethylbenzene (BTEX) can escape into the environment from oil and gas operations and manufacturing industries posing significant health risks to humans and wildlife. Unlike conventional clean-up methods used, biological approaches such as bioremediation can provide a more energy and labour-efficient and environmentally friendly option for sensitive areas such as nature reserves and cities, protecting biodiversity and public health. BTEX contamination is often concentrated in the subsurface of these locations where oxygen is rapidly depleted, and biodegradation relies on anaerobic processes. Thus, it is critical to understand the anaerobic biodegradation characteristics as it has not been explored to a major extent. This review presents novel insights into the degradation mechanisms under anaerobic conditions and presents a detailed description and interconnection between them. BTEX degradation can follow four activation mechanisms: hydroxylation, carboxylation, methylation, and fumarate addition. Hydroxylation is one of the mechanisms that explains the transformation of benzene into phenol, toluene into benzyl alcohol or p-cresol, and ethylbenzene into 1-phenylethanol. Carboxylation to benzoate is thought to be the primary mechanism of degradation for benzene. Despite being poorly understood, benzene methylation has been also reported. Moreover, fumarate addition is the most widely reported mechanism, present in toluene, ethylbenzene, and xylene degradation. Further research efforts are required to better elucidate new and current alternative catabolic pathways. Likewise, a comprehensive analysis of the enzymes involved as well as the development of advance tools such as omic tools can reveal bottlenecks degradation steps and create more effective on-site strategies to address BTEX pollution.
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Affiliation(s)
- Diego A Hernández-Ospina
- Department of Civil Engineering, Lassonde School of Engineering, York University, North York, Toronto, Ontario, Canada, M3J 1P3
| | - Carlos S Osorio-González
- Department of Civil Engineering, Lassonde School of Engineering, York University, North York, Toronto, Ontario, Canada, M3J 1P3
| | - Saba Miri
- Department of Civil Engineering, Lassonde School of Engineering, York University, North York, Toronto, Ontario, Canada, M3J 1P3
| | - Satinder Kaur Brar
- Department of Civil Engineering, Lassonde School of Engineering, York University, North York, Toronto, Ontario, Canada, M3J 1P3.
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2
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Dai Y, Li J, Wang S, Cai X, Zhao X, Cheng X, Huang Q, Yang X, Luo C, Zhang G. Unveiling the synergistic mechanism of autochthonous fungal bioaugmentation and ammonium nitrogen biostimulation for enhanced phenanthrene degradation in oil-contaminated soils. JOURNAL OF HAZARDOUS MATERIALS 2024; 465:133293. [PMID: 38141301 DOI: 10.1016/j.jhazmat.2023.133293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Revised: 11/22/2023] [Accepted: 12/14/2023] [Indexed: 12/25/2023]
Abstract
Autochthonous bioaugmentation and nutrient biostimulation are promising bioremediation methods for polycyclic aromatic hydrocarbons (PAHs) in contaminated agricultural soils, but little is known about their combined working mechanism. In this study, a microcosm trial was conducted to explore the combined mechanism of autochthonous fungal bioaugmentation and ammonium nitrogen biostimulation, using DNA stable-isotope-probing (DNA-SIP) and microbial network analysis. Both treatments significantly improved phenanthrene (PHE) removal, with their combined application producing the best results. The microbial community composition was notably altered by all bioremediation treatments, particularly the PHE-degrading bacterial and fungal taxa. Fungal bioaugmentation removed PAHs through extracellular enzyme secretion but reduced soil microbial diversity and ecological stability, while nitrogen biostimulation promoted PAH dissipation by stimulating indigenous soil degrading microbes, including fungi and key bacteria in the soil co-occurrence networks, ensuring the ecological diversity of soil microorganisms. The combination of both approaches proved to be the most effective strategy, maintaining a high degradation efficiency and relatively stable soil biodiversity through the secretion of lignin hydrolytic enzymes by fungi, and stimulating the reproduction of soil native degrading microbes, especially the key degraders in the co-occurrence networks. Our findings provide a fresh perspective of the synergy between fungal bioaugmentation and nitrogen biostimulation, highlighting the potential of this combined bioremediation approach for in situ PAH-contaminated soils.
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Affiliation(s)
- Yeliang Dai
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China
| | - Jibing Li
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China.
| | - Shuang Wang
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China
| | - Xixi Cai
- Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China
| | - Xuan Zhao
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China
| | - Xianghui Cheng
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China
| | - Qihui Huang
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou 510632, China
| | - Xiumin Yang
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Chunling Luo
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China.
| | - Gan Zhang
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China
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3
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Amato A, Becci A, Bollero A, Cerrillo-Gonzalez MDM, Cuesta-Lopez S, Ener S, Dirba I, Gutfleisch O, Innocenzi V, Montes M, Sakkas K, Sokolova I, Vegliò F, Villen-Guzman M, Vicente-Barragan E, Yakoumis I, Beolchini F. Life Cycle Assessment of Rare Earth Elements-Free Permanent Magnet Alternatives: Sintered Ferrite and Mn-Al-C. ACS SUSTAINABLE CHEMISTRY & ENGINEERING 2023; 11:13374-13386. [PMID: 37711764 PMCID: PMC10498492 DOI: 10.1021/acssuschemeng.3c02984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Revised: 08/21/2023] [Indexed: 09/16/2023]
Abstract
Permanent magnets are fundamental constituents in key sectors such as energy and transport, but also robotics, automatization, medicine, etc. High-performance magnets are based on rare earth elements (RE), included in the European list of critical raw materials list. The volatility of their market increased the research over the past decade to develop RE-free magnets to fill the large performance/cost gap existing between ferrites and RE-based magnets. The improvement of hard ferrites and Mn-Al-C permanent magnets plays into this important technological role in the near future. The possible substitution advantage was widely discussed in the literature considering both magnetic properties and economic aspects. To evaluate further sustainability aspects, the present paper gives a life cycle assessment quantifying the environmental gain resulting from the production of RE-free magnets based on traditional hexaferrite and Mn-Al-C. The analysis quantified an advantage of both magnets that overcomes the 95% in all the considered impact categories (such as climate change, ozone depletion, human toxicity) compared to RE-based technologies. The benefit also includes the health and safety of working time aspects, proving possible reduction of worker risks by 3-12 times. The results represent the fundamentals for the development of green magnets that are able to significantly contribute to an effective sustainable transition.
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Affiliation(s)
- Alessia Amato
- Department
of Life and Environmental Sciences, Università
Politecnica delle Marche, Ancona 60131, Italy
| | - Alessandro Becci
- Department
of Life and Environmental Sciences, Università
Politecnica delle Marche, Ancona 60131, Italy
| | - Alberto Bollero
- Group
of Permanent Magnets and Applications, IMDEA
Nanoscience, Madrid 28049, Spain
| | | | - Santiago Cuesta-Lopez
- Fundación
ICAMCYL, International Center for Advanced Materials and Raw Materials
of Castilla y León, 24009 León, Spain
| | - Semih Ener
- Department
Functional Materials, Material Science Faculty, Technical University of Darmstadt, 64287 Darmstadt, Germany
| | - Imants Dirba
- Department
Functional Materials, Material Science Faculty, Technical University of Darmstadt, 64287 Darmstadt, Germany
| | - Oliver Gutfleisch
- Department
Functional Materials, Material Science Faculty, Technical University of Darmstadt, 64287 Darmstadt, Germany
| | - Valentina Innocenzi
- SmartWaste
Engineering S.r.l., Piazzale
Monteluco di Roio, 67100 L’Aquila, Italy
| | - Myriam Montes
- Fundación
ICAMCYL, International Center for Advanced Materials and Raw Materials
of Castilla y León, 24009 León, Spain
| | | | - Irina Sokolova
- Fundación
ICAMCYL, International Center for Advanced Materials and Raw Materials
of Castilla y León, 24009 León, Spain
| | - Francesco Vegliò
- SmartWaste
Engineering S.r.l., Piazzale
Monteluco di Roio, 67100 L’Aquila, Italy
| | - Maria Villen-Guzman
- Department
of Chemical Engineering, Faculty of Sciences, Universidad de Málaga, 29071 Malaga, Spain
| | - Eva Vicente-Barragan
- Fundación
ICAMCYL, International Center for Advanced Materials and Raw Materials
of Castilla y León, 24009 León, Spain
| | - Iakovos Yakoumis
- MNLT
Innovations PC, Kifisias
Ave. 125−127, 11524 Athens, Greece
| | - Francesca Beolchini
- Department
of Life and Environmental Sciences, Università
Politecnica delle Marche, Ancona 60131, Italy
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Omenna EC, Omage K, Ezaka E, Azeke MA. Tolerance, taxonomic and phylogenetic studies of some bacterial isolates involved in bioremediation of crude oil polluted soil in the southern region of Nigeria. Heliyon 2023; 9:e15639. [PMID: 37151690 PMCID: PMC10161795 DOI: 10.1016/j.heliyon.2023.e15639] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 04/14/2023] [Accepted: 04/17/2023] [Indexed: 05/09/2023] Open
Abstract
Indigenous bacteria play vital roles in the bioremediation of crude oil polluted soils. The effectiveness of the bioremediation process depends on the tolerance, characteristics and biodiversity of the bacteria isolates. Bacteria strains were isolated from crude-oil polluted sites in different locations in the southern region of Nigeria namely: Azikoro and Otukpoti (Bayelsa state); Ologbo and Benin (Edo State) and non-polluted soil was collected from Ibadan (Oyo state). Tolerance study was conducted for 96 h s. Isolation and characterization of the most effective isolate from each location was done using cultural, physico-chemical and molecular methods. The tolerance level of the isolates from the different oil-polluted soils and their comparative growth performance on crude oil supplemented media decreases in the order: Azikoro - Ologbo - Otukpoti - Benin. MATS analysis showed that cell surfaces of Azikoro, Ologbo and Otukpoti strains exhibited 58-63 % adhesion to n-hexadecane and are hydrophobic strains while Benin strain possess 38% adhesion to n-hexadecane and are hydrophilic. The cell surfaces of isolates from Azikoro, Ologbo and Otukpoti are highly Lewis-acidic while that from Benin is highly Lewis-basic. Isolates from Benin-3, Ologbo-1, and Otukpoti-1 were shown to be gram positive while that from Azikoro was gram negative. 16S rDNA fingerprinting confirmed the identities of the isolates as follows: Paenalcaligenes suwonesis with accession numbers NR-133804.1 from Azikoro spillage site (93.77%); Lactobacillus nagelii with accession number NR-158108.1 (91.30%) from Benin spillage site; Lactobacillus fermentum with accession number NR-104927.1 (96.70%) from Ologbo and Otukpoti spillage sites. Phylogenetic analysis putatively categorized the isolates from Otukpoti and Ologbo in close association belonging to same homology while Benin isolate is a subgroup. The characteristics and biodiversity of all the isolated bacteria from the regions possibly justifies their involvement in the bioremediation of petroleum hydrocarbons.
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Affiliation(s)
| | - Kingsley Omage
- Department of Biochemistry, College of Basic Medical Sciences, Igbinedion University Okada, Edo State, Nigeria
- Division of Endocrinology, Diabetology and Nephrology, Department of Internal Medicine, University Hospital Tübingen, Germany
- Corresponding author. Department of Biochemistry, College of Basic Medical Sciences, Igbinedion University Okada, Edo State, Nigeria.
| | - Emmanuel Ezaka
- Institute of Agricultural Research and Training, Obafemi Awolowo University, Nigeria
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Basim Y, Mohebali G, Jorfi S, Nabizadeh R, Moghadam MA, Ghadiri A, Haghighi Fard NJ. Bacterial strains diversity in contaminated soils and their potential for bioremediation of total petroleum hydrocarbons in south west of Iran. JOURNAL OF ENVIRONMENTAL HEALTH SCIENCE & ENGINEERING 2022; 20:601-608. [PMID: 36406594 PMCID: PMC9672257 DOI: 10.1007/s40201-020-00592-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Accepted: 12/08/2020] [Indexed: 06/16/2023]
Abstract
PURPOSE The main purpose of this research was investigating of bioremediation potential oily contaminated soils using native bacterial strains in an oil field. METHODS In this research, total bacterial consortium were identified in oily soils with sandy loam texture as case and non-contaminated soils as controls during six months. The dominant strains present on contaminated soil were identified by DNA extraction using 16S rDNA gene sequencing via NGS technique and compared with bacteria present in non-contaminated soil as control samples. Furthermore, quantitative variations of bacterial count along with total petroleum hydrocarbons (TPH) removal was performed in oily (case) samples to investigate the relation between TPH removal and changes in bacterial density. The TPH values were determined with gas chromatography equipped with a flame ionization detector (GC-FID). RESULTS The dominant identified bacteria in oily soil were as follows: Halomonas, Moraxellaceae, Thalassobacillus, Zhihengliuella and Enterobacteriaceae which varied significantly from those identified in control soil. The bacterial diversity was higher in contaminated soil and a TPH removal of 50.9% was observed over a period of six months monitoring. CONCLUSION Indigenous bacteria in oil-contaminated soils of an oilfield in south west of Iran were found to be able to degrade Total Petroleum Hydrocarbons. Our results showed that bioremediation of oil-contaminated soils can be implemented without need to amplification of heterogeneous bacteria. Considering sandy loam texture of soil samples, the identified strains of bacteria could be introduced as sufficient consortium for biodegradation of this soils with similar texture.
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Affiliation(s)
- Yalda Basim
- Environmental Technologies Research Center, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Ghasemali Mohebali
- Microbiology and Biotechnology Research Group, Research Institute of Petroleum Industry, Tehran, Iran
| | - Sahand Jorfi
- Environmental Technologies Research Center, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Ramin Nabizadeh
- Department of Environmental Health Engineering, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran
| | | | - Ata Ghadiri
- Department of Immunology, School of Medicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
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Ghaedrahmat Z, Ghafari S, Almasi H, Baboli Z, Neisi A. Effective bioremediation of petroleum‐contaminated saline soil using halotolerant
Bacillus
strains isolated from the Persian Gulf. J Basic Microbiol 2022; 62:1429-1439. [DOI: 10.1002/jobm.202200144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2022] [Revised: 08/24/2022] [Accepted: 09/10/2022] [Indexed: 11/11/2022]
Affiliation(s)
- Zeinab Ghaedrahmat
- Department of Environmental Health Engineering Shoushtar Faculty of Medical Sciences Shoushtar Iran
| | - Shokouh Ghafari
- Infectious Diseases Research Center, Birjand University of Medical Sciences, Deparment of Microbiogy Birjand University of Medical Sciences Birjand Iran
| | - Halime Almasi
- Department of Environmental Health Engineering Shoushtar Faculty of Medical Sciences Shoushtar Iran
| | - Zeynab Baboli
- Department of Environmental Health Engineering Behbahan Faculty of Medical Sciences Behbahan Iran
| | - Abdolkazem Neisi
- Department of Environmental Health Engineering, School of Health, Ahvaz Jundishapur University of Medical Sciences; Environmental Technology Research Center Ahvaz jundishapur University of Medical Sciences Ahvaz Iran
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Abbasi M, Kafilzadeh F, Sabokbar A, Haddadi A. Biodegradation of Phenanthrene Polluted Soil through Native Strains in the Darkhouvin Oil Field. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2097272] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
Affiliation(s)
- Maryam Abbasi
- Department of Microbiology, Karaj Branch, Islamic Azad University, Karaj, Iran
| | - Farshid Kafilzadeh
- Department of Biology, Jahrom Branch, Islamic Azad University, Jahrom, Iran
| | - Azar Sabokbar
- Department of Microbiology, Karaj Branch, Islamic Azad University, Karaj, Iran
| | - Azam Haddadi
- Department of Microbiology, Karaj Branch, Islamic Azad University, Karaj, Iran
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Biostimulation and Bioaugmentation of Soils Contaminated with Decachlorobiphenyl (PCB-209) Using Native Bacterial Strains Individually and in Consortia. SUSTAINABILITY 2022. [DOI: 10.3390/su14159068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Historically, microorganisms have proven to be efficient alternatives for the removal of PCBs, since these contaminants continue to be a major problem for human health and the environment. In this work, the removal of decachlorobiphenyl (PCB-209) was evaluated using native bacterial strains individually and in consortia through biostimulation and bioaugmentation processes. Bacillus sp. DCB13, Staphylococcus sp. DCB28, and Acinetobacter sp. DCB104 were biostimulated in a minimal medium that initially contained biphenyl and later PCB-209 for adaptation as a carbon source. The removal potential of PCB-209 by bacterial strains was evaluated in a bioaugmentation process under aerobic conditions. Using a completely randomized design, ten different treatments were evaluated. Finally, the bacterial growth (CFU/g of soil) and the chemical characteristics of the bioaugmented soil were determined, as was the content of PCB-209 removed by gas chromatography–mass spectrometry. Strains DCB13, DCB28, and DCB104 showed cell growth (>3.4 × 105 CFU/mL) during 120 h of biostimulation, with a marked difference between treatments with biphenyl compared with those where PCB-209 was added. Strains DCB13 and DCB104 (3.4 × 105 CFU/mL and 2.0 × 106 CFU/mL, respectively) grew better with PCB-209, while DCB28 grew better with biphenyl (4.5 × 106 CFU/mL). In bioaugmented soils contaminated with PCB-209, the strains showed maximum growth when inoculated in a consortium (>2.0 × 104 CFU/g). The results showe that the range of the bacterial elimination of PCB-209 in the treatments was from 9.58 to 17.33 mg/kg. The highest elimination potential of PCB-209 was obtained when the bacterial strains were inoculated in a consortium. These findings open a wide perspective for the use of native bacteria for the cleaning and restoration of soils contaminated by toxic chemicals.
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Narayan Thorat B, Kumar Sonwani R. Current technologies and future perspectives for the treatment of complex petroleum refinery wastewater: A review. BIORESOURCE TECHNOLOGY 2022; 355:127263. [PMID: 35526717 DOI: 10.1016/j.biortech.2022.127263] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2022] [Revised: 04/28/2022] [Accepted: 05/01/2022] [Indexed: 06/14/2023]
Abstract
Petroleum refinery wastewater (PRW) is a complex mixture of hydrocarbons, sulphides, ammonia, oils, suspended and dissolved solids, and heavy metals. As these pollutants are toxic and recalcitrant, it is essential to address the above issue with efficient, economical, and eco-friendly technologies. In this review, initially, an overview of the characteristics of wastewater discharged from different petroleum refinery units is discussed. Further, various pre-treatment and post-treatment strategies for complex PRW are introduced. A segregated approach has been proposed to treat the crude desalting, sour, spent caustic, and oily wastewater of petroleum refineries. The combined systems (e.g., ozonation + moving bed biofilm reactor and photocatalysis + packed bed biofilm reactor) for the treatment of low biodegradability index wastewater (BOD5/COD < 0.2) were discussed to construct a perspective map and implement the proposed system efficiently. The economic, toxicity, and biodegradability aspects are also introduced, along with research gaps and future scope.
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Affiliation(s)
- Bhaskar Narayan Thorat
- Department of Chemical Engineering, Institute of Chemical Technology, Mumbai-Indian Oil Odisha Campus, Bhubaneswar, Odisha 751013, India
| | - Ravi Kumar Sonwani
- Department of Chemical Engineering, Institute of Chemical Technology, Mumbai-Indian Oil Odisha Campus, Bhubaneswar, Odisha 751013, India; Department of Chemical Engineering, Indian Institute of Petroleum and Energy (IIPE), Visakhapatnam, Andhra Pradesh 530003, India.
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A Review on Biotechnological Approaches Applied for Marine Hydrocarbon Spills Remediation. Microorganisms 2022; 10:microorganisms10071289. [PMID: 35889007 PMCID: PMC9324126 DOI: 10.3390/microorganisms10071289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Revised: 06/18/2022] [Accepted: 06/21/2022] [Indexed: 12/04/2022] Open
Abstract
The increasing demand for petroleum products generates needs for innovative and reliable methods for cleaning up crude oil spills. Annually, several oil spills occur around the world, which brings numerous ecological and environmental disasters on the surface of deep seawaters like oceans. Biological and physico-chemical remediation technologies can be efficient in terms of spill cleanup and microorganisms—mainly bacteria—are the main ones responsible for petroleum hydrocarbons (PHCs) degradation such as crude oil. Currently, biodegradation is considered as one of the most sustainable and efficient techniques for the removal of PHCs. However, environmental factors associated with the functioning and performance of microorganisms involved in hydrocarbon-degradation have remained relatively unclear. This has limited our understanding on how to select and inoculate microorganisms within technologies of cleaning and to optimize physico-chemical remediation and degradation methods. This review article presents the latest discoveries in bioremediation techniques such as biostimulation, bioaugmentation, and biosurfactants as well as immobilization strategies for increasing the efficiency. Besides, environmental affecting factors and microbial strains engaged in bioremediation and biodegradation of PHCs in marines are discussed.
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Sattar S, Siddiqui S, Shahzad A, Bano A, Naeem M, Hussain R, Khan N, Jan BL, Yasmin H. Comparative Analysis of Microbial Consortiums and Nanoparticles for Rehabilitating Petroleum Waste Contaminated Soils. Molecules 2022; 27:molecules27061945. [PMID: 35335306 PMCID: PMC8951462 DOI: 10.3390/molecules27061945] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Revised: 02/25/2022] [Accepted: 02/27/2022] [Indexed: 11/22/2022] Open
Abstract
Nano-bioremediation application is an ecologically and environmentally friendly technique to overcome the catastrophic situation in soil because of petroleum waste contamination. We evaluated the efficiency of oil-degrading bacterial consortium and silver nanoparticles (AgNPs) with or without fertilizer to remediate soils collected from petroleum waste contaminated oil fields. Physicochemical characteristics of control soil and petroleum contaminated soils were assessed. Four oil-degrading strains, namely Bacillus pumilus (KY010576), Exiguobacteriaum aurantiacum (KY010578), Lysinibacillus fusiformis (KY010586), and Pseudomonas putida (KX580766), were selected based on their in vitrohydrocarbon-degrading efficiency. In a lab experiment, contaminated soils were treated alone and with combined amendments of the bacterial consortium, AgNPs, and fertilizers (ammonium nitrate and diammonium phosphate). We detected the degradation rate of total petroleum hydrocarbons (TPHs) of the soil samples with GC-FID at different intervals of the incubation period (0, 5, 20, 60, 240 days). The bacterial population (CFU/g) was also monitored during the entire period of incubation. The results showed that 70% more TPH was degraded with a consortium with their sole application in 20 days of incubation. There was a positive correlation between TPH degradation and the 100-fold increase in bacterial population in contaminated soils. This study revealed that bacterial consortiums alone showed the maximum increase in the degradation of TPHs at 20 days. The application of nanoparticles and fertilizer has non-significant effects on the consortium degradation potential. Moreover, fertilizer alone or in combination with AgNPs and consortium slows the rate of degradation of TPHs over a short period. Still, it subsequently accelerates the rate of degradation of TPHs, and a negligible amount remains at the end of the incubation period.
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Affiliation(s)
- Shehla Sattar
- National Centre of Excellence in Geology, University of Peshawar, Peshawar 25130, Pakistan; (S.S.); (R.H.)
- Department of Environmental Sciences, University of Swabi, Swabi 23561, Pakistan
- Correspondence: (S.S.); (H.Y.)
| | - Samina Siddiqui
- National Centre of Excellence in Geology, University of Peshawar, Peshawar 25130, Pakistan; (S.S.); (R.H.)
| | - Asim Shahzad
- Department of Botany, Mohi-ud-Din Islamic University, Nerian Sharif 12080, Pakistan;
- College of Geography and Environment, Henan University, Jinming Ave, Kaifeng 475004, China
| | - Asghari Bano
- Department of Bio-Sciences, Quaid Avenue University of Wah, Wah 47000, Pakistan;
| | - Muhammad Naeem
- Department of Biotechnology, Mohi-ud-Din Islamic University, Nerian Sharif 12080, Pakistan;
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Rahib Hussain
- National Centre of Excellence in Geology, University of Peshawar, Peshawar 25130, Pakistan; (S.S.); (R.H.)
- College of Earth and Environmental Sciences, University of the Punjab, Lahore 54590, Pakistan
| | - Naeem Khan
- Department of Agronomy, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA;
| | - Basit Latief Jan
- Department of Clinical Pharmacy, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia;
| | - Humaira Yasmin
- Department of Biosciences, COMSATS University Islamabad (CUI), Islamabad 45550, Pakistan
- Correspondence: (S.S.); (H.Y.)
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Jayaramaiah RH, Egidi E, Macdonald CA, Wang J, Jeffries TC, Megharaj M, Singh BK. Soil initial bacterial diversity and nutrient availability determine the rate of xenobiotic biodegradation. Microb Biotechnol 2022; 15:318-336. [PMID: 34689422 PMCID: PMC8719800 DOI: 10.1111/1751-7915.13946] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 09/28/2021] [Accepted: 09/29/2021] [Indexed: 01/23/2023] Open
Abstract
Understanding the relative importance of soil microbial diversity, plants and nutrient management is crucial to implement an effective bioremediation approach to xenobiotics-contaminated soils. To date, knowledge on the interactive effects of soil microbiome, plant and nutrient supply on influencing biodegradation potential of soils remains limited. In this study, we evaluated the individual and interactive effects of soil initial bacterial diversity, nutrient amendments (organic and inorganic) and plant presence on the biodegradation rate of pyrene, a polycyclic aromatic hydrocarbon. Initial bacterial diversity had a strong positive impact on soil biodegradation potential, with soil harbouring higher bacterial diversity showing ~ 2 times higher degradation rates than soils with lower bacterial diversity. Both organic and inorganic nutrient amendments consistently improved the degradation rate in lower diversity soils and had negative (inorganic) to neutral (organic) effect in higher diversity soils. Interestingly, plant presence/type did not show any significant effect on the degradation rate in most of the treatments. Structural equation modelling demonstrated that initial bacterial diversity had a prominent role in driving pyrene biodegradation rates. We provide novel evidence that suggests that soil initial microbial diversity, and nutrient amendments should be explicitly considered in the design and employment of bioremediation management strategies for restoring natural habitats disturbed by organic pollutants.
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Affiliation(s)
- Ramesha H. Jayaramaiah
- Hawkesbury Institute for the EnvironmentWestern Sydney UniversityPenrithNSW2751Australia
| | - Eleonora Egidi
- Hawkesbury Institute for the EnvironmentWestern Sydney UniversityPenrithNSW2751Australia
- Global Centre for Land‐based InnovationWestern Sydney UniversityPenrithNSW2751Australia
| | - Catriona A. Macdonald
- Hawkesbury Institute for the EnvironmentWestern Sydney UniversityPenrithNSW2751Australia
| | - Jun‐Tao Wang
- Hawkesbury Institute for the EnvironmentWestern Sydney UniversityPenrithNSW2751Australia
- Global Centre for Land‐based InnovationWestern Sydney UniversityPenrithNSW2751Australia
| | - Thomas C. Jeffries
- Global Centre for Land‐based InnovationWestern Sydney UniversityPenrithNSW2751Australia
- School of ScienceWestern Sydney UniversityPenrithNSW2751Australia
| | - Mallavarapu Megharaj
- Global Centre for Environmental RemediationThe University of NewcastleCallaghanNSW2308Australia
| | - Brajesh K. Singh
- Hawkesbury Institute for the EnvironmentWestern Sydney UniversityPenrithNSW2751Australia
- Global Centre for Land‐based InnovationWestern Sydney UniversityPenrithNSW2751Australia
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Ahmad M, Wang P, Li JL, Wang R, Duan L, Luo X, Irfan M, Peng Z, Yin L, Li WJ. Impacts of bio-stimulants on pyrene degradation, prokaryotic community compositions, and functions. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 289:117863. [PMID: 34352636 DOI: 10.1016/j.envpol.2021.117863] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Revised: 07/26/2021] [Accepted: 07/27/2021] [Indexed: 06/13/2023]
Abstract
Bio-stimulation of the indigenous microbial community is considered as an effective strategy for the bioremediation of polluted environments. This examination explored the near effects of various bio-stimulants on pyrene degradation, prokaryotic community compositions, and functions using 16S rRNA amplicon sequencing and qPCR. At first, the results displayed significant differences (p < 0.05) between the prokaryotic community structures of the control group, PYR (contains pyrene only), and bio-stimulants amended groups. Among the bio-stimulants, biochar, oxalic acid, salicylate, NPK, and ammonium sulfate augmented the pyrene degradation potential of microbial communities. Moreover, the higher abundance of genera, such as Flavobacterium, Hydrogenophaga, Mycobacterium, Rhodococcus, Flavihumibacter, Pseudomonas, Novosphingobium, etc., across the treatments indicated that these genera play a vital role in pyrene metabolism. Based on the higher abundance of GP-RHD and nidA genes, we speculated that Gram-positive prokaryotic communities are more competent in pyrene dissipation than Gram-negative. Furthermore, the marked abundance of nifH, and pqqC genes in the NPK and SA treatments, respectively, suggested that different bio-stimulants might enrich certain bacterial assemblages. Besides, the significant distinctions (p < 0.05) between the bacterial consortia of HA (humic acid) and SA (sodium acetate) groups from NPK, OX (oxalic acid), UR (urea), NH4, and SC (salicylate) groups also suggested that different bio-stimulants might induce distinct ecological impacts influencing the succession of prokaryotic communities in distinct directions. This work provides new insight into the bacterial degradation of pyrene using the bio-stimulation technique. It suggests that it is equally important to investigate the community structure and functions along with studying their impacts on degradation when devising a bio-stimulation technology.
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Affiliation(s)
- Manzoor Ahmad
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Pandeng Wang
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Jia-Ling Li
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Renfei Wang
- Division of Biosciences, University College London, Gower Street, London, WC1E 6BT, UK
| | - Li Duan
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Xiaoqing Luo
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Muhammad Irfan
- Department of Oral Biology, College of Dentistry, University of Florida, Gainesville, FL, United States
| | - Ziqi Peng
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Lingzi Yin
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China
| | - Wen-Jun Li
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China; State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, PR China.
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14
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Wang B, Gao J, Xu J, Fu X, Han H, Li Z, Wang L, Zhang F, Tian Y, Peng R, Yao Q. Optimization and reconstruction of two new complete degradation pathways for 3-chlorocatechol and 4-chlorocatechol in Escherichia coli. JOURNAL OF HAZARDOUS MATERIALS 2021; 419:126428. [PMID: 34171665 DOI: 10.1016/j.jhazmat.2021.126428] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 05/11/2021] [Accepted: 06/16/2021] [Indexed: 06/13/2023]
Abstract
Chlorinated aromatic compounds are a serious environmental concern because of their widespread occurrence throughout the environment. Although several microorganisms have evolved to gain the ability to degrade chlorinated aromatic compounds and use them as carbon sources, they still cannot meet the diverse needs of pollution remediation. In this study, the degradation pathways for 3-chlorocatechol (3CC) and 4-chlorocatechol (4CC) were successfully reconstructed by the optimization, synthesis, and assembly of functional genes from different strains. The addition of a 13C-labeled substrate and functional analysis of different metabolic modules confirmed that the genetically engineered strains can metabolize chlorocatechol similar to naturally degrading strains. The strain containing either of these artificial pathways can degrade catechol, 3CC, and 4CC completely, although differences in the degradation efficiency may be noted. Proteomic analysis and scanning electron microscopy observation showed that 3CC and 4CC have toxic effects on Escherichia coli, but the engineered bacteria can significantly eliminate these inhibitory effects. As core metabolic pathways for the degradation of chloroaromatics, the two chlorocatechol degradation pathways constructed in this study can be used to construct pollution remediation-engineered bacteria, and the related technologies may be applied to construct complete degradation pathways for complex organic hazardous materials.
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Affiliation(s)
- Bo Wang
- Shanghai Key laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai, PR China
| | - Jianjie Gao
- Shanghai Key laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai, PR China
| | - Jing Xu
- Shanghai Key laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai, PR China
| | - Xiaoyan Fu
- Shanghai Key laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai, PR China
| | - Hongjuan Han
- Shanghai Key laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai, PR China
| | - Zhenjun Li
- Shanghai Key laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai, PR China
| | - Lijuan Wang
- Shanghai Key laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai, PR China
| | - Fujian Zhang
- Shanghai Key laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai, PR China
| | - Yongsheng Tian
- Shanghai Key laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai, PR China.
| | - Rihe Peng
- Shanghai Key laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai, PR China.
| | - Quanhong Yao
- Shanghai Key laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai, PR China.
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Sonwani RK, Kim KH, Zhang M, Tsang YF, Lee SS, Giri BS, Singh RS, Rai BN. Construction of biotreatment platforms for aromatic hydrocarbons and their future perspectives. JOURNAL OF HAZARDOUS MATERIALS 2021; 416:125968. [PMID: 34492879 DOI: 10.1016/j.jhazmat.2021.125968] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2020] [Revised: 04/05/2021] [Accepted: 04/22/2021] [Indexed: 06/13/2023]
Abstract
Aromatic hydrocarbons (AHCs) are one of the major environmental pollutants introduced from both natural and anthropogenic sources. Many AHCs are well known for their toxic, carcinogenic, and mutagenic impact on human health and ecological systems. Biodegradation is an eco-friendly and cost-effective option as microorganisms (e.g., bacteria, fungi, and algae) can efficiently breakdown or transform such pollutants into less harmful and simple metabolites (e.g., carbon dioxide (aerobic), methane (anaerobic), water, and inorganic salts). This paper is organized to offer a state-of-the-art review on the biodegradation of AHCs (monocyclic aromatic hydrocarbons (MAHs) and polycyclic aromatic hydrocarbons (PAHs)) and associated mechanisms. The recent progress in biological treatment using suspended and attached growth bioreactors for the biodegradation of AHCs is also discussed. In addition, various substrate growth and inhibition models are introduced along with the key factors governing their biodegradation kinetics. The growth and inhibition models have helped gain a better understanding of substrate inhibition in biodegradation. Techno-economic analysis (TEA) and life cycle assessment (LCA) aspects are also described to assess the technical, economical, and environmental impacts of the biological treatment system.
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Affiliation(s)
- Ravi Kumar Sonwani
- Department of Chemical Engineering & Technology Indian Institute of Technology (BHU), Varanasi 221005, Uttar Pradesh, India
| | - Ki-Hyun Kim
- Department of Civil and Environmental Engineering, Hanyang University, 222 Wangsimni-Ro, Seoul 04763, Republic of Korea.
| | - Ming Zhang
- Department of Environmental Engineering, China Jiliang University, Hangzhou 310018, China
| | - Yiu Fai Tsang
- Department of Science and Environmental Studies, The Education University of Hong Kong, Tai Po, New Territories 999077, Hong Kong
| | - Sang Soo Lee
- Department of Environmental Engineering, Yonsei University, Wonju 26493, Republic of Korea
| | - Balendu Shekher Giri
- Department of Chemical Engineering & Technology Indian Institute of Technology (BHU), Varanasi 221005, Uttar Pradesh, India
| | - Ram Sharan Singh
- Department of Chemical Engineering & Technology Indian Institute of Technology (BHU), Varanasi 221005, Uttar Pradesh, India
| | - Birendra Nath Rai
- Department of Chemical Engineering & Technology Indian Institute of Technology (BHU), Varanasi 221005, Uttar Pradesh, India
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16
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de Almeida FF, Freitas D, Motteran F, Fernandes BS, Gavazza S. Bioremediation of polycyclic aromatic hydrocarbons in contaminated mangroves: Understanding the historical and key parameter profiles. MARINE POLLUTION BULLETIN 2021; 169:112553. [PMID: 34091245 DOI: 10.1016/j.marpolbul.2021.112553] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Revised: 04/26/2021] [Accepted: 05/24/2021] [Indexed: 06/12/2023]
Abstract
Sensitive biomes, such as coastal ecosystems, have become increasingly susceptible to environmental impacts caused by oil logistics and storing, which, although more efficient nowadays, still cause spills. Thus, bioremediation techniques attract attention owing to their low impact on the environment. Among petroleum-based compounds, polycyclic aromatic hydrocarbons (PAHs) are known for their potential impact and persistence in the environment. Therefore, PAH bioremediation is notably a technique capable of reducing these polluting compounds in the environment. However, there is a lack of understanding of microbial growth process conditions, leading to a less efficient choice of bioremediation methods. This article provides a review of the bioremediation processes in mangroves contaminated with oils and PAHs and an overview of some physicochemical and biological factors. Special attention was given to the lack of approach regarding experiments that have been conducted in situ and that considered the predominance of the anaerobic condition of mangroves.
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Affiliation(s)
- Felipe Filgueiras de Almeida
- Department of Civil Engineering, Federal University of Pernambuco (UFPE), Acadêmico Hélio Ramos Avenue, s/n, 50740-530 Recife, PE, Brazil
| | - Danúbia Freitas
- Department of Civil Engineering, Federal University of Pernambuco (UFPE), Acadêmico Hélio Ramos Avenue, s/n, 50740-530 Recife, PE, Brazil
| | - Fabrício Motteran
- Department of Civil Engineering, Federal University of Pernambuco (UFPE), Acadêmico Hélio Ramos Avenue, s/n, 50740-530 Recife, PE, Brazil
| | - Bruna Soares Fernandes
- Department of Civil Engineering, Federal University of Pernambuco (UFPE), Acadêmico Hélio Ramos Avenue, s/n, 50740-530 Recife, PE, Brazil
| | - Sávia Gavazza
- Department of Civil Engineering, Federal University of Pernambuco (UFPE), Acadêmico Hélio Ramos Avenue, s/n, 50740-530 Recife, PE, Brazil.
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Pandya DK, Kumar MA. Chemo-metric engineering designs for deciphering the biodegradation of polycyclic aromatic hydrocarbons. JOURNAL OF HAZARDOUS MATERIALS 2021; 411:125154. [PMID: 33858107 DOI: 10.1016/j.jhazmat.2021.125154] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Revised: 01/07/2021] [Accepted: 01/13/2021] [Indexed: 06/12/2023]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are non-polar organic compounds that are omnipresent in the environment and released due to anthropogenic activities through emissions and discharges. PAHs, being xenobiotic and exerts health impacts, thus they attract serious concern by the environmentalists. The stringent regulations and the need of sustainable development urges the hunt for a technically feasible and cost-effective wastewater treatment. Although the conventional physico-chemical treatment are widely preferred, they cause secondary pollution problems and demand subsequent treatment options. This comprehensive review intends to address the (a) different PAHs and their associated toxicity, (b) the remedial strategies, particularly biodegradation. The biological wastewater treatment techniques that involve microbial systems are highly influenced by the different physio-chemical and environmental parameters. Therefore, suitable optimization techniques are prerequisite for effective functioning of the biological treatment that sustains judiciously and interpreted in a lesser time. Here we have aimed to discuss (a) different chemo-metric tools involved in the design of experiments (DoE), (b) design equations and models, (c) tools for evaluating the model's adequacy and (d) plots for graphically interpreting the chemo-metric designs. However, to best of our knowledge, this is a first review to discuss the PAHs biodegradation that are tailored by chemo-metric designs. The associated challenges, available opportunities and techno-economic aspects of PAHs degradation using chemo-metric engineering designs are explained. Additionally, the review highlights how well these DoE tools can be suited for the sustainable socio-industrial sectors. Concomitantly, the futuristic scope and prospects to undertake new areas of research exploration were emphasized to unravel the least explored chemo-metric designs.
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Affiliation(s)
- Darshita Ketan Pandya
- Analytical and Environmental Science Division & Centralized Instrument Facility, CSIR-Central Salt & Marine Chemicals Research Institute, Bhavnagar 364002, Gujarat, India
| | - Madhava Anil Kumar
- Analytical and Environmental Science Division & Centralized Instrument Facility, CSIR-Central Salt & Marine Chemicals Research Institute, Bhavnagar 364002, Gujarat, India; Academy of Scientific and Innovative Research, Ghaziabad 201002, Uttar Pradesh, India.
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18
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Morales M, Sentchilo V, Hadadi N, van der Meer JR. Genome-wide gene expression changes of Pseudomonas veronii 1YdBTEX2 during bioaugmentation in polluted soils. ENVIRONMENTAL MICROBIOME 2021; 16:8. [PMID: 33926576 PMCID: PMC8082905 DOI: 10.1186/s40793-021-00378-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Accepted: 04/10/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND Bioaugmentation aims to use the capacities of specific bacterial strains inoculated into sites to enhance pollutant biodegradation. Bioaugmentation results have been mixed, which has been attributed to poor inoculant growth and survival in the field, and, consequently, moderate catalytic performance. However, our understanding of biodegradation activity mostly comes from experiments conducted under laboratory conditions, and the processes occurring during adaptation and invasion of inoculants into complex environmental microbiomes remain poorly known. The main aim of this work was thus to study the specific and different cellular reactions of an inoculant for bioaugmentation during adaptation, growth and survival in natural clean and contaminated non-sterile soils, in order to better understand factors limiting bioaugmentation. RESULTS As inoculant we focused on the monoaromatic compound-degrading bacterium Pseudomonas veronii 1YdBTEX2. The strain proliferated in all but one soil types in presence and in absence of exogenously added toluene. RNAseq and differential genome-wide gene expression analysis illustrated both a range of common soil responses such as increased nutrient scavenging and recycling, expression of defense mechanisms, as well as environment-specific reactions, notably osmoprotection and metal homeostasis. The core metabolism of P. veronii remained remarkably constant during exponential growth irrespective of the environment, with slight changes in cofactor regeneration pathways, possibly needed for balancing defense reactions. CONCLUSIONS P. veronii displayed a versatile global program, enabling it to adapt to a variety of soil environments in the presence and even in absence of its target pollutant toluene. Our results thus challenge the widely perceived dogma of poor survival and growth of exogenous inoculants in complex microbial ecosystems such as soil and provide a further basis to developing successful bioaugmentation strategies.
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Affiliation(s)
- Marian Morales
- Department of Fundamental Microbiology, University of Lausanne, 1015, Lausanne, Switzerland
| | - Vladimir Sentchilo
- Department of Fundamental Microbiology, University of Lausanne, 1015, Lausanne, Switzerland
| | - Noushin Hadadi
- Department of Fundamental Microbiology, University of Lausanne, 1015, Lausanne, Switzerland
| | - Jan Roelof van der Meer
- Department of Fundamental Microbiology, University of Lausanne, 1015, Lausanne, Switzerland.
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A salt resistant biosurfactant produced by moderately halotolerant Pseudomonas aeruginosa (AHV-KH10) and its application for bioremediation of diesel-contaminated sediment in saline environment. Biodegradation 2021; 32:327-341. [PMID: 33860410 DOI: 10.1007/s10532-021-09941-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Accepted: 03/31/2021] [Indexed: 10/21/2022]
Abstract
A halotolerant bacterial strain was isolated from oily-contaminated sites of Persian Gulf, which characterized as Pseudomonas aeruginosa (AHV-KH10) by 16S rRNA gene sequencing. This strain was used for bioremediation of diesel-contaminated sediments. Biosurfactant production was initially screened by using oil displacement test and drop-collapse method, followed by measurement of surface tension (ST) of growth medium. Produced biosurfactant was a rhamnolipid type biosurfactant and lowered the ST to 33.4 mN/m at the given critical micelle concentration (CMC) of 75 mg/L. Addition of 3 CMC rhamnolipid, inoculums size of 15 mL, biodegradation in slurry phase and salinity level of 6% led totally to a diesel biodegradation rate of 70% for initial concentration of 1000 mg/kg after 35 days. The maximum diesel removal occurred at the salinity content of 6% indicating the moderately halo-tolerant characteristics of isolated strain. Evaluation of bacterial growth showed a biomass yield of 0.33 mg VSS/mg diesel in selected conditions. The field performance of Pseudomonas aeruginosa AHV-KH10 was proved through the removal of the TPH content in unwashed sediment, which varied from 2390 to 1875 mg/kg within four months.
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20
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Ugochukwu UC, Okonkwo F, Sokari W, Eneh C, Ezogu L. Bioremediation Strategy Based on Risk Assessment of Exposure to Residual Polycyclic Aromatic Hydrocarbons. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021; 280:111650. [PMID: 33213994 DOI: 10.1016/j.jenvman.2020.111650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Revised: 09/09/2020] [Accepted: 11/05/2020] [Indexed: 06/11/2023]
Abstract
In this study, application of risk assessment was the basis for the selection of an optimum treatment option for the potential bioremediation of a hydrocarbon polluted environment. This approach was applied in a hydrocarbon polluted swampy terrain in the Niger Delta of Nigeria and could actually be applied to any other hydrocarbon polluted environment. Three nutrient sources namely compost, liquid organic fertilizer and NPK were employed in the laboratory biostimulation of the biodegradation of the hydrocarbons experiments using three levels of concentration for each nutrient as 5, 10 and 20% (w/w). Total petroleum hydrocarbon (TPH) and polycyclic aromatic hydrocarbons (PAH) were the analytes used in assessing the biodegradation potential of the various treatments. The residual concentration of these analytes post biodegradation was measured by means of gas chromatography-flame ionization detector and gas chromatography-mass spectrometry. Results indicate that compost and liquid organic fertilizer at 5% (w/w) were very poor in biostimulating the biodegradation of the hydrocarbons (less than 20% biodegradation of TPH and 3-30% biodegradation of the PAHs). NPK performed better than the other two sources of nutrients as it effected 74-84% TPH biodegradation and 39-90% PAHs biodegradation. On screening the three NPK treatment options using risk assessment, the 5% w/w NPK treatment option was rejected as its associated residual PAHs posed risks that exceeded the risk threshold of 10^-6 whereas the other two (10 and 20% w/w NPK) were successful with risk values less than the threshold. However, the 10% w/w NPK treatment offers a cheaper option between the two hence it is selected as the optimum bioremediation option based on risk management.
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Affiliation(s)
| | - Faith Okonkwo
- SHELL Centre for Environmental Management & Control, University of Nigeria, Enugu Campus, Enugu State, Nigeria
| | - Wilson Sokari
- SHELL Centre for Environmental Management & Control, University of Nigeria, Enugu Campus, Enugu State, Nigeria
| | - Cynthia Eneh
- SHELL Centre for Environmental Management & Control, University of Nigeria, Enugu Campus, Enugu State, Nigeria
| | - Lewis Ezogu
- Department of Microbiology, University of Nigeria, Nsukka, Enugu State, Nigeria
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21
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Verasoundarapandian G, Wong CY, Shaharuddin NA, Gomez-Fuentes C, Zulkharnain A, Ahmad SA. A Review and Bibliometric Analysis on Applications of Microbial Degradation of Hydrocarbon Contaminants in Arctic Marine Environment at Metagenomic and Enzymatic Levels. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:ijerph18041671. [PMID: 33572432 PMCID: PMC7916232 DOI: 10.3390/ijerph18041671] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/26/2020] [Revised: 02/04/2021] [Accepted: 02/05/2021] [Indexed: 12/20/2022]
Abstract
The globe is presently reliant on natural resources, fossil fuels, and crude oil to support the world’s energy requirements. Human exploration for oil resources is always associated with irreversible effects. Primary sources of hydrocarbon pollution are instigated through oil exploration, extraction, and transportation in the Arctic region. To address the state of pollution, it is necessary to understand the mechanisms and processes of the bioremediation of hydrocarbons. The application of various microbial communities originated from the Arctic can provide a better interpretation on the mechanisms of specific microbes in the biodegradation process. The composition of oil and consequences of hydrocarbon pollutants to the various marine environments are also discussed in this paper. An overview of emerging trends on literature or research publications published in the last decade was compiled via bibliometric analysis in relation to the topic of interest, which is the microbial community present in the Arctic and Antarctic marine environments. This review also presents the hydrocarbon-degrading microbial community present in the Arctic, biodegradation metabolic pathways (enzymatic level), and capacity of microbial degradation from the perspective of metagenomics. The limitations are stated and recommendations are proposed for future research prospects on biodegradation of oil contaminants by microbial community at the low temperature regions of the Arctic.
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Affiliation(s)
| | - Chiew-Yen Wong
- School of Health Sciences, International Medical University, Kuala Lumpur 57000, Malaysia;
- National Antarctic Research Center, Universiti Malaya, Kuala Lumpur 50603, Malaysia
| | - Noor Azmi Shaharuddin
- Department of Biochemistry, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; (G.V.); (N.A.S.)
| | - Claudio Gomez-Fuentes
- Department of Chemical Engineering, Universidad de Magallanes, Avda. Bulnes 01855, Punta Arenas, Chile;
- Center for Research and Antarctic Environmental Monitoring (CIMAA), Universidad de Magallanes, Avda. Bulnes 01855, Punta Arenas, Chile
| | - Azham Zulkharnain
- Department of Bioscience and Engineering, Shibaura Institute of Technology, Saitama-shi 337-8570, Saitama, Japan;
| | - Siti Aqlima Ahmad
- Department of Biochemistry, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; (G.V.); (N.A.S.)
- National Antarctic Research Center, Universiti Malaya, Kuala Lumpur 50603, Malaysia
- Center for Research and Antarctic Environmental Monitoring (CIMAA), Universidad de Magallanes, Avda. Bulnes 01855, Punta Arenas, Chile
- Correspondence:
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Dell'Anno A, Beolchini F, Corinaldesi C, Amato A, Becci A, Rastelli E, Hekeu M, Regoli F, Astarita E, Greco S, Musco L, Danovaro R. Assessing the efficiency and eco-sustainability of bioremediation strategies for the reclamation of highly contaminated marine sediments. MARINE ENVIRONMENTAL RESEARCH 2020; 162:105101. [PMID: 32846320 DOI: 10.1016/j.marenvres.2020.105101] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Revised: 07/29/2020] [Accepted: 08/03/2020] [Indexed: 06/11/2023]
Abstract
Coastal sediments subjected to high anthropogenic impacts can accumulate large amounts of polycyclic aromatic hydrocarbons (PAHs) and metals, demanding effective and eco-sustainable remediation solutions. In this study, we carried out bioremediation experiments on marine sediments highly contaminated with PAHs and metals. In particular, we investigated the effects of biostimulation (by the addition of inorganic nutrients), bioaugmentation (by the addition of fungi belonging to Aspergillus sp.) and microbial fuel cell-based strategies on PAH degradation and on changes in metal partitioning. Results reported here indicate that all biotreatments determined a significant decrease of PAH concentrations (at least 60%) in a relatively short time interval (few weeks) and that biostimulation was the most effective approach (>90%). Biostimulation determined a faster degradation rate of high than low molecular weight PAHs, indicating a preferential biodegradation of specific PAH congeners. At the same time, the biotreatments changed the partitioning of metals, including their solubilization, suggesting the need of parallel environmental risk assessment. Our findings also suggest that ex situ biotreatments can have a lower carbon footprint than current management options of contaminated sediments (i.e., landfill disposal and/or disposal in confined aquatic facilities), but integration with other strategies for metal removal (e.g. through bioleaching) from sediments is needed for their safe re-use. Overall, results presented here provide new insights into the development of effective and eco-sustainable bioremediation strategies for the reclamation of highly contaminated marine sediments.
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Affiliation(s)
- A Dell'Anno
- Dipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, Via Brecce Bianche, 60131, Ancona, Italy.
| | - F Beolchini
- Dipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, Via Brecce Bianche, 60131, Ancona, Italy
| | - C Corinaldesi
- Dipartimento di Scienze e Ingegneria della Materia, dell'Ambiente ed Urbanistica, Università Politecnica delle Marche, Via Brecce Bianche, 60131, Ancona, Italy
| | - A Amato
- Dipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, Via Brecce Bianche, 60131, Ancona, Italy
| | - A Becci
- Dipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, Via Brecce Bianche, 60131, Ancona, Italy
| | - E Rastelli
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Napoli, Italy
| | - M Hekeu
- Dipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, Via Brecce Bianche, 60131, Ancona, Italy
| | - F Regoli
- Dipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, Via Brecce Bianche, 60131, Ancona, Italy
| | - E Astarita
- Dipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, Via Brecce Bianche, 60131, Ancona, Italy
| | - S Greco
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Napoli, Italy
| | - L Musco
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Napoli, Italy
| | - R Danovaro
- Dipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, Via Brecce Bianche, 60131, Ancona, Italy; Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Napoli, Italy
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Nejad YS, Jaafarzadeh N, Ahmadi M, Abtahi M, Ghafari S, Jorfi S. Remediation of oily sludge wastes using biosurfactant produced by bacterial isolate Pseudomonas balearica strain Z8. JOURNAL OF ENVIRONMENTAL HEALTH SCIENCE & ENGINEERING 2020; 18:531-539. [PMID: 33312581 PMCID: PMC7721957 DOI: 10.1007/s40201-020-00480-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Accepted: 04/24/2020] [Indexed: 06/12/2023]
Abstract
Biological treatment of oily sludge wastes was studied using an isolated halo-tolerant strain Pseudomonas balearica strain Z8. An oily sludge sample was obtained from oil fields of south waste of Iran and was fully characterized. The initial TPH content was 44,500 mg kg-1. The ability of Pseudomonas balearica strain Z8 in production of biosurfactant was investigated using oil displacement method. Results demonstrated that isolated strain is a biosurfactant producing bacteria. The CMC and emulsification index [E24] of produced biosurfactant were 90 mg L-1 and 44% for crude oil. Effect of operational parameters including nitrogen source, sludge/water ratio and temperature were investigated against the time. The most TPH removal of 35% was observed for nitrogen source of NH4Cl, sludge/ water ratio of 1:7 and temperature of 40 °C.
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Affiliation(s)
- Yaser Soltani Nejad
- Department of Environmental Health Engineering, School of Health, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Neematollah Jaafarzadeh
- Department of Environmental Health Engineering, School of Health, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
- Environmental Technologies Research Center, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Mehdi Ahmadi
- Department of Environmental Health Engineering, School of Health, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
- Environmental Technologies Research Center, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Mehrnoosh Abtahi
- Department of Environmental Health Engineering, School of Public Health and Safety, Shahid Beheshti University of Medical Sciences, Tehran, Iran
- Environmental and Occupational Hazards Control Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Shokouh Ghafari
- Infectious Diseases Research Center, Birjand University of Medical Sciences, Birjand, Iran
| | - Sahand Jorfi
- Environmental Technologies Research Center, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
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Dehvari M, Ghafari S, Haghighifard NJ, Jorfi S. Petroleum Contaminated Seawater Detoxification in Microcosm by Halotolerant Consortium Isolated from Persian Gulf. Curr Microbiol 2020; 78:95-106. [PMID: 33159563 DOI: 10.1007/s00284-020-02267-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Accepted: 10/21/2020] [Indexed: 11/29/2022]
Abstract
Bioremediation of a petroleum contaminated seawater from Persian Gulf was investigated and efficiency of natural attenuation by native halotolerant bacterial consortium, biostimulation by addition of macro nutrients (nitrogen and phosphorus) and surfactant and bioaugmentation by application of halotolerant hydrocarbon degrading strains were evaluated. Biodegradation rates in defined conditions were studied for 30 days. Four pure isolates including Bacillus sp. PG-1, Pseudomonas aeruginosa PG-2, Paenibacillus lautus PG-3, and Pseudomonas putida PG-4 were used to preparation of bacterial consortium. Results indicated that the bioaugmentation yielded the best TPH removal efficiency of 56.24%, followed by biostimulation with surfactant addition (removal of 31.52%). The most bacterial density was also observed for bioaugmentation bioreactor. Toxicity of reaction medium was evaluated by oxygen consumption rate inhibition, dehydrogenase activity inhibition and growth rate inhibition methods in which, the least toxicity rates of 27%, 25% and 31% were observed for bioaugmentation based bioreactor, respectively. Simultaneous bioaugmentation and biostimulation can efficiently reduce the crude oil content in the surface of seawater using halotolerant strains.
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Affiliation(s)
| | - Shokouh Ghafari
- Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | | | - Sahand Jorfi
- Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran.
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Wei Z, Wang JJ, Gaston LA, Li J, Fultz LM, DeLaune RD, Dodla SK. Remediation of crude oil-contaminated coastal marsh soil: Integrated effect of biochar, rhamnolipid biosurfactant and nitrogen application. JOURNAL OF HAZARDOUS MATERIALS 2020; 396:122595. [PMID: 32298868 DOI: 10.1016/j.jhazmat.2020.122595] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2020] [Revised: 03/11/2020] [Accepted: 03/25/2020] [Indexed: 06/11/2023]
Abstract
Decontamination of oil spills from coastal wetland soils requires a delicate approach. A microcosm study was carried out to investigate the impact of integrated application of biochar, rhamnolipid (RL) biosurfactant and nitrogen (N) on petroleum hydrocarbon remediation in a Louisiana coastal saline marsh and their impact on soil microbial community. The soil was artificially contaminated with crude oil and subjected to treatments of different combinations of sugarcane residue biochar, RL, and coated urea. Total petroleum hydrocarbons (TPH) in the contaminated soil were analyzed periodically using gas chromatograph and associated soil bacterial community was studied using 16 s rRNA sequencing technologies. Results showed that integrated application of biochar + RL, biochar + N, and biochar + N+RL reduced 32.3%, 73.2%, 80.9% of TPH, respectively, and exhibited synergic interaction with higher efficiency than application individually. Combined treatments showed distinct functions that biochar increased the sorption of aromatic compounds, while RL and N enhanced the degradation of heavy and light aliphatic compounds. All remediation treatments caused reduction of soil bacterial diversity while RL and N shifted the microbial community to higher abundances of Proteobacteria and Bacteroidetes, respectively. Overall, the findings of this study demonstrate the positivity of applying integrated biochar, biosurfactant, and N treatment in oil remediation in wetland soils.
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Affiliation(s)
- Zhuo Wei
- School of Plant, Environment and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA 70803, USA
| | - Jim J Wang
- School of Plant, Environment and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA 70803, USA.
| | - Lewis A Gaston
- School of Plant, Environment and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA 70803, USA
| | - Jifeng Li
- Department of Life Sciences, Louisiana State University. Baton Rouge, LA 70803, USA
| | - Lisa M Fultz
- School of Plant, Environment and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA 70803, USA
| | - Ronald D DeLaune
- Department of Oceanography and Coastal Sciences, Louisiana State University, Baton Rouge, LA 70803, USA
| | - Syam K Dodla
- Red River Research Station, Louisiana State University Agricultural Center, Bossier City, LA 71112, USA
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26
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Hu X, Li D, Qiao Y, Song Q, Guan Z, Qiu K, Cao J, Huang L. Salt tolerance mechanism of a hydrocarbon-degrading strain: Salt tolerance mediated by accumulated betaine in cells. JOURNAL OF HAZARDOUS MATERIALS 2020; 392:122326. [PMID: 32092654 DOI: 10.1016/j.jhazmat.2020.122326] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Revised: 02/15/2020] [Accepted: 02/15/2020] [Indexed: 06/10/2023]
Abstract
Rhodococcus sp. HX-2 could degrade diesel oil in the presence of 1%-10 % NaCl. The compatible solute betaine accumulated in cells with increasing NaCl concentration, and this was found to be the main mechanism of resistance of HX-2 to high salt concentration. Exogenously added betaine can be transported into cells, which improved cell growth and the percentage degradation of diesel oil in the presence of high [NaCl] in solution and in soil. Scanning electron microscopy data suggested that addition of exogenous betaine facilitated salt tolerance by stimulating exopolysaccharide production. Fourier-transform infrared analysis suggested that surface hydroxyl, amide and phosphate groups may be related to tolerance of high-salt environments. Four betaine transporter-encoding genes (H0, H1, H3, H5) and the betaine producer gene betB were induced in Rhodococcus sp. HX-2 by NaCl stress. The maximal induction of H0, H1, H3 and H5 transcription depended on high salinity plus the presence of betaine. These results demonstrate that salt tolerance is mediated by accumulated betaine in Rhodococcus sp. HX-2 cells, and the potential of this strain for application in bioremediation of hydrocarbon pollution in saline environments.
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Affiliation(s)
- Xin Hu
- College of Chemistry and Chemical Engineering, Tianjin Key Laboratory of Organic Solar Cells and Photochemical Conversion, Tianjin Key Laboratory of Drug Targeting and Bioimaging, Tianjin University of Technology, Tianjin, 300384, China
| | - Dahui Li
- College of Chemistry and Chemical Engineering, Tianjin Key Laboratory of Organic Solar Cells and Photochemical Conversion, Tianjin Key Laboratory of Drug Targeting and Bioimaging, Tianjin University of Technology, Tianjin, 300384, China
| | - Yue Qiao
- College of Chemistry and Chemical Engineering, Tianjin Key Laboratory of Organic Solar Cells and Photochemical Conversion, Tianjin Key Laboratory of Drug Targeting and Bioimaging, Tianjin University of Technology, Tianjin, 300384, China
| | - Qianqian Song
- College of Chemistry and Chemical Engineering, Tianjin Key Laboratory of Organic Solar Cells and Photochemical Conversion, Tianjin Key Laboratory of Drug Targeting and Bioimaging, Tianjin University of Technology, Tianjin, 300384, China
| | - Zhiguo Guan
- College of Chemistry and Chemical Engineering, Tianjin Key Laboratory of Organic Solar Cells and Photochemical Conversion, Tianjin Key Laboratory of Drug Targeting and Bioimaging, Tianjin University of Technology, Tianjin, 300384, China
| | - Kaixuan Qiu
- College of Chemistry and Chemical Engineering, Tianjin Key Laboratory of Organic Solar Cells and Photochemical Conversion, Tianjin Key Laboratory of Drug Targeting and Bioimaging, Tianjin University of Technology, Tianjin, 300384, China
| | - Jiachang Cao
- College of Chemistry and Chemical Engineering, Tianjin Key Laboratory of Organic Solar Cells and Photochemical Conversion, Tianjin Key Laboratory of Drug Targeting and Bioimaging, Tianjin University of Technology, Tianjin, 300384, China
| | - Lei Huang
- College of Chemistry and Chemical Engineering, Tianjin Key Laboratory of Organic Solar Cells and Photochemical Conversion, Tianjin Key Laboratory of Drug Targeting and Bioimaging, Tianjin University of Technology, Tianjin, 300384, China.
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27
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Removal of Diesel Oil in Soil Microcosms and Implication for Geophysical Monitoring. WATER 2019. [DOI: 10.3390/w11081661] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Bioremediation of soils polluted with diesel oil is one of the methods already applied on a large scale. However, several questions remain open surrounding the operative conditions and biological strategies to be adopted to optimize the removal efficiency. This study aimed to investigate the environmental factors that influence geophysical properties in soil polluted with diesel oils, in particular, during the biodegradation of this contaminant by an indigenous microbial population. With this aim, aerobic degradation was performed in soil column microcosms with a high concentration of diesel oil (75 g kg−1 of soil); the dielectric permittivity and electrical conductivity were measured. In one of the microcosms, the addition of glucose was also tested. Biostimulation was performed with a Mineral Salt Medium for Bacteria. The sensitivity of the dielectric permittivity versus temperature was analyzed. A theoretical approach was adopted to estimate the changes in the bulk dielectric permittivity of a mixture of sandy soil-water-oil-gas, according to the variations in the oil content. The sensitivity of the dielectric permittivity to the temperature effects was analyzed. The results show that (1) biostimulation can give good removal efficiency; (2) the addition of glucose as a primary carbon source does not improve the diesel oil removal; (3) a limited amount of diesel oil was removed by adsorption and volatilization effects; and (4) the diesel oil efficiency removal was in the order of 70% after 200 days, with different removal percentages for oil components; the best results were obtained for molecules with a low retention time. This study is preparatory to the adoption of geophysical methods to monitor the biological process on a larger scale. Altogether, these results will be useful to apply the process on a larger scale, where geophysical methods will be adopted for monitoring.
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28
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Gharibzadeh F, Kalantary RR, Esrafili A, Ravanipour M, Azari A. Desorption kinetics and isotherms of phenanthrene from contaminated soil. JOURNAL OF ENVIRONMENTAL HEALTH SCIENCE & ENGINEERING 2019; 17:171-181. [PMID: 31297207 PMCID: PMC6582045 DOI: 10.1007/s40201-019-00338-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2018] [Accepted: 01/07/2019] [Indexed: 06/10/2023]
Abstract
BACKGROUND Prediction of polycyclic aromatic hydrocarbons (PAHs) desorption from soil to estimate available fraction regarding to initial concentration of the contaminant is of great important in soil pollution management, which has poorly been understood until now. In the present study estimation of fast desorption fraction which is considered as available fraction was conducted by evaluating desorption kinetics of phenanthrene (a three ring PAH) from artificially contaminated soils through the mathematical models. METHODS Desorption rate of phenanthrene (PHE) was investigated by using the nonionic surfactant Tween80 in a series of batch experiments. The effects of reaction time from 5 to 1440 min and initial PHE concentration in the range of 100-1600 mg/kg were studied. RESULTS Available fractions of the contaminant were achieved within the first hour of desorption process as the system reached to equilibrium conditions. Experimental data were examined by using kinetic models including pseudo-first-order, pseudo-second-order in four linearized forms, and fractional power. Among the models tested, experimental data were well described by pseudo-second-order model type (III) and (IV) and fractional power equation. Fast desorption rates, as Available fractions were determined 79%, 46%, 40%, 39%, and 35% for initial PHE concentrations of 100, 400, 800, 1200, and 1600 mg/kg respectively. Among the evaluated isotherm models, including Freundlich, Langmuir in four linearized forms, and Temkin, the equilibrium data were well fitted by the first one. CONCLUSION Applying the nonionic surfactant Tween80 is a useful method to determine available fraction of the contaminant. This method will provide the management of contaminated sites by choosing a proper technique for remediation and predicting achievable treatment efficiency.
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Affiliation(s)
- Farzaneh Gharibzadeh
- Students’ Scientific Research Center (SSRC), Tehran University of Medical Sciences, Tehran, Iran
- Department of Environmental Health Engineering, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran
| | - Roshanak Rezaei Kalantary
- Research Center for Environmental Health Technology (RCEHT), Iran University of Medical Sciences, Tehran, Iran
- Department of Environmental Health Engineering, Faculty of Public Health, Iran University of Medical Sciences, Tehran, Iran
| | - Ali Esrafili
- Research Center for Environmental Health Technology (RCEHT), Iran University of Medical Sciences, Tehran, Iran
- Department of Environmental Health Engineering, Faculty of Public Health, Iran University of Medical Sciences, Tehran, Iran
| | - Masoumeh Ravanipour
- Department of Environmental Health Engineering, Faculty of Public Health, Bushehr University of Medical Sciences, Bushehr, Iran
| | - Ali Azari
- Students’ Scientific Research Center (SSRC), Tehran University of Medical Sciences, Tehran, Iran
- Department of Environmental Health Engineering, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran
- Department of Environmental Health Engineering, Faculty of Health, Kashan University of Medical Sciences, Kashan, Iran
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29
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Madrid F, Rubio-Bellido M, Villaverde J, Peña A, Morillo E. Natural and assisted dissipation of polycyclic aromatic hydrocarbons in a long-term co-contaminated soil with creosote and potentially toxic elements. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 660:705-714. [PMID: 30743956 DOI: 10.1016/j.scitotenv.2018.12.376] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Revised: 12/10/2018] [Accepted: 12/24/2018] [Indexed: 05/20/2023]
Abstract
An enhanced bioremediation strategy was applied to an industrial soil co-contaminated with Polycyclic Aromatic Hydrocarbons (PAHs) and Potentially Toxic Elements (PTEs). Hydroxypropyl-β-cyclodextrin (HPBCD) and a natural mixture of two rhamnolipids (RL) were added to increase PAHs bioavailability, and combined with a microbial consortium (MC) to biodegrade soil PAHs. Bioavailability of only six PAHs (3-, 4-ring PAHs) increased when using HPBCD, with a maximum increase about 2.8-fold higher. The highest dose of HPBCD (5%) enhanced PAH degradation, with the best results for 4-ring PAHs with treatments of HPBCD + MC (up to 48% degradation for pyrene and 43% for fluoranthene), whereas dissipation for 5-ring PAHs was very low and for 6-ring was negligible. The use of RL increased the bioavailability of 13 of the 16 PAHs studied, reaching up to 60-fold higher values for phenanthrene or 18-fold higher for acenaphtene. RL addition did not show degradation improvement in any situation, and even inhibited the scarce degradation observed in the control treatment. The high increase in availability of both PAHs and mainly PTEs when using RL as amendment could make them toxic for microorganisms. In fact, Microtox Acute Toxicity test using Aliivibrio fischeri and the absence of colony forming units (CFUs) of indigenous bacteria demonstrated the extremely high levels of toxicity in RL treated soil.
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Affiliation(s)
- F Madrid
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS-CSIC), Apdo. 1052, 41080 Sevilla, Spain
| | - M Rubio-Bellido
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS-CSIC), Apdo. 1052, 41080 Sevilla, Spain
| | - J Villaverde
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS-CSIC), Apdo. 1052, 41080 Sevilla, Spain
| | - A Peña
- Instituto Andaluz de Ciencias de la Tierra (CSIC-UGR), Avda. de las Palmeras 4, 18100, Armilla, Granada, Spain
| | - E Morillo
- Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS-CSIC), Apdo. 1052, 41080 Sevilla, Spain.
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Pino-Herrera DO, Pechaud Y, Huguenot D, Esposito G, van Hullebusch ED, Oturan MA. Removal mechanisms in aerobic slurry bioreactors for remediation of soils and sediments polluted with hydrophobic organic compounds: An overview. JOURNAL OF HAZARDOUS MATERIALS 2017; 339:427-449. [PMID: 28715703 DOI: 10.1016/j.jhazmat.2017.06.013] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2017] [Revised: 06/04/2017] [Accepted: 06/06/2017] [Indexed: 06/07/2023]
Abstract
Hydrophobic organic compound (HOC)-contaminated soils are a great environmental and public health concern nowadays. Further research is necessary to develop environmental friendly biotechnologies that allows public and private sectors to implement efficient and adaptable treatment approaches. Aerobic soil-slurry bioreactor technology has emerged as an effective and feasible technique with a high remediation potential, especially for silt and clay soil fractions, which often contain the highest pollutant concentration levels and are usually difficult to remove by implementing conventional methods. However, the mechanisms involved in the HOC removal in bioslurry reactor are still not completely understood. Gas-liquid and solid-liquid mass transfer, mass transport and biodegradation phenomena are the main known processes taking place in slurry bioreactors. This review compiles the most up-to-date information available about these phenomena and tries to link them, enlightening the possible interactions between parameters. It gathers the basic information needed to understand the complex bioremediation technology and raises awareness of some considerations that should be made.
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Affiliation(s)
- Douglas O Pino-Herrera
- Université Paris-Est, Laboratoire Géomatériaux et Environnement (EA 4508), UPEM, Marne-la-Vallée, 77454, France
| | - Yoan Pechaud
- Université Paris-Est, Laboratoire Géomatériaux et Environnement (EA 4508), UPEM, Marne-la-Vallée, 77454, France.
| | - David Huguenot
- Université Paris-Est, Laboratoire Géomatériaux et Environnement (EA 4508), UPEM, Marne-la-Vallée, 77454, France
| | - Giovanni Esposito
- University of Cassino and Southern Lazio, Department of Civil Engineering, Via di Biasio, 43, Cassino, 03043 FR, Italy
| | - Eric D van Hullebusch
- Université Paris-Est, Laboratoire Géomatériaux et Environnement (EA 4508), UPEM, Marne-la-Vallée, 77454, France; IHE Delft Institute for Water Education, Department of Environmental Engineering and Water Technology, Westvest 7, 2611 AX Delft, The Netherlands
| | - Mehmet A Oturan
- Université Paris-Est, Laboratoire Géomatériaux et Environnement (EA 4508), UPEM, Marne-la-Vallée, 77454, France
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Jorfi S, Pourfadakari S, Ahmadi M, Akbari H. Thermally activated persulfate treatment and mineralization of a recalcitrant high TDS petrochemical wastewater. POLISH JOURNAL OF CHEMICAL TECHNOLOGY 2017. [DOI: 10.1515/pjct-2017-0031] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Thermally activated persulfate efficiency for the treatment of a recalcitrant high TDS wastewater was investigated. The specific character of studied wastewater was high TDS content of around 23820 mg/L and BOD5/COD ratio of 0.07. Effective operational parameters including initial pH values of 3–9, reaction temperature of 40–80°C and persulfate concentrations of 0.5–5 g/L for COD removal were investigated in batch mode experiments. Removal efficiency was pH and temperature dependent. The COD and TOC removal of 94.3% and 82.8% were obtained at persulfate concentration of 4 g/L, initial pH value of 5 and temperature of 70°C after 180 min for initial COD concentration of 1410 mg/L. The pseudo first-order kinetic model was best fitted with COD removal (R2 = 0.94).
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Affiliation(s)
- Sahand Jorfi
- Ahvaz Jundishapur University of Medical Sciences , Environmental Technologies Research Center , Ahvaz , Iran (Islamic Republic of)
- Ahvaz Jundishapur University of Medical Sciences , Department of Environmental Health Engineering, School of Health , Ahvaz , Iran (Islamic Republic of)
| | - Sudabeh Pourfadakari
- Ahvaz Jundishapur University of Medical Sciences , Department of Environmental Health Engineering, School of Health , Ahvaz , Iran (Islamic Republic of)
| | - Mehdi Ahmadi
- Ahvaz Jundishapur University of Medical Sciences , Environmental Technologies Research Center , Ahvaz , Iran (Islamic Republic of)
- Ahvaz Jundishapur University of Medical Sciences , Department of Environmental Health Engineering, School of Health , Ahvaz , Iran (Islamic Republic of)
| | - Hamideh Akbari
- Zahedan University of Medical Sciences , Department of Environmental Health Engineering, School of Health , Zahedan , Iran (Islamic Republic of)
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Eskandary S, Tahmourespour A, Hoodaji M, Abdollahi A. The synergistic use of plant and isolated bacteria to clean up polycyclic aromatic hydrocarbons from contaminated soil. JOURNAL OF ENVIRONMENTAL HEALTH SCIENCE & ENGINEERING 2017; 15:12. [PMID: 28638622 PMCID: PMC5474056 DOI: 10.1186/s40201-017-0274-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2016] [Accepted: 05/30/2017] [Indexed: 06/08/2023]
Abstract
BACKGROUND Biological methods of polycyclic aromatic hydrocarbons (PAH) contamination elimination typically involve the transformation of contaminants to non-toxic materials by microorganisms and plants and appear to be the most effective methods available. METHODS In this study, Bacillus licheniformis and Bacillus mojavensis isolated from oil-contaminated soils were inoculated onto Festuca arundinacea seeds before planting in the pot and 3 weeks after planting by syringe injection into the rhizospheric zone in order to study the elimination of PAHs from Festuca's rhizosphere in the greenhouse. Some physical and chemical properties of the soil, PAH concentrations, seeds germination percentage, root and shoot biomasses of the treated samples were examined. RESULTS The results showed that the treated samples inoculated with both bacteria had a significantly higher percentage of seed germination and root and shoot biomass compared to other treatments. The concentration of some PAHs reduced significantly (Pvalue < 0.05) in the rhizosphere of the treated samples inoculated with both bacteria compared to in contaminated soils. Concentrations of some PAHs (eg. Naphthalene, Phenanthrene, Benzo[a]anthracene and Dibenzo[a,h]anthracene) even reached below the detection limit of the method. The PAHs concentrations in the treated samples inoculated with bacteria was decreased significantly (Pvalue < 0.05). Therefore, the results showed the high efficiency of the Festuca and bacterial inoculation in eliminating PAHs from the soil. CONCLUSION According to the results, the partnership of Festuca with B. licheniformis and B. mojavensis isolates displayed positive effect on PAHs dissipation and can be effective cleanup technology with high performance.
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Affiliation(s)
- S. Eskandary
- Isfahan(Khorasgan) Branch, Islamic Azad University, Arghavanieh Bv, Jey street, Isfahan, Iran
| | - A. Tahmourespour
- Isfahan(Khorasgan) Branch, Islamic Azad University, Arghavanieh Bv, Jey street, Isfahan, Iran
| | - M. Hoodaji
- Isfahan(Khorasgan) Branch, Islamic Azad University, Arghavanieh Bv, Jey street, Isfahan, Iran
| | - A. Abdollahi
- Isfahan(Khorasgan) Branch, Islamic Azad University, Arghavanieh Bv, Jey street, Isfahan, Iran
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Gharibzadeh F, Rezaei Kalantary R, Nasseri S, Esrafili A, Azari A. Reuse of polycyclic aromatic hydrocarbons (PAHs) contaminated soil washing effluent by bioaugmentation/biostimulation process. Sep Purif Technol 2016. [DOI: 10.1016/j.seppur.2016.05.022] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Shahzad A, Saddiqui S, Bano A. The response of maize (Zea mays L.) plant assisted with bacterial consortium and fertilizer under oily sludge. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2016; 18:521-526. [PMID: 26587972 DOI: 10.1080/15226514.2015.1115964] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
The objective of this study was to evaluate the role of PGPR consortium and fertilizer alone and in combination on the physiology of maize grown under oily sludge stress environment as well on the soil nutrient status. Consortium was prepared from Bacillus cereus (Acc KR232400), Bacillus altitudinis (Acc KF859970), Comamonas (Delftia) belonging to family Comamonadacea (Acc KF859971) and Stenotrophomonasmaltophilia (Acc KF859973). The experiment was conducted in pots with complete randomized design with four replicates and kept in field. Oily sludge was mixed in ml and Ammonium nitrate and Diammonium phosphate (DAP) were added at 70 ug/g and 7 ug/g at sowing. The plant was harvested at 21 d for estimation of protein, proline and antioxidant enzymes superoxide dismutase (SOD) and peroxidase (POD). To study the degradation, total petroleum hydrocarbon was extracted by soxhelt extraction and extract was analyzed by GC-FID at different period after incubation. Combined application of consortium and fertilizer enhanced the germination %, protein and, proline content by 90,130 and 99% higher than untreated maize plants. Bioavailability of macro and micro nutrient was also enhanced with consortium and fertilizer in oily sludge. The consortium and fertilizer in combined treatment decreased the superoxide dismutase (SOD), peroxidase dismutase (POD) of the maize leaves grown in oily sludge. Degradation of total petroleum hydrocarbon (TPHs) was 59% higher in combined application of consortium and fertilizer than untreated maize at 3 d. The bacterial consortium can enhanced the maize tolerance to oily sludge and enhanced degradation of total petroleum hydrocarbon (TPHs). The maize can be considered as tolerant plant species to remediate oily sludge contaminated soils.
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Affiliation(s)
- Asim Shahzad
- a Quaid-i-Azam University , Islamabad , Pakistan
| | - Samina Saddiqui
- b National Center for Excellence in Geology , University of Peshawar , Pakistan
| | - Asghari Bano
- a Quaid-i-Azam University , Islamabad , Pakistan
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Bargiela R, Gertler C, Magagnini M, Mapelli F, Chen J, Daffonchio D, Golyshin PN, Ferrer M. Degradation Network Reconstruction in Uric Acid and Ammonium Amendments in Oil-Degrading Marine Microcosms Guided by Metagenomic Data. Front Microbiol 2015; 6:1270. [PMID: 26635742 PMCID: PMC4656828 DOI: 10.3389/fmicb.2015.01270] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2015] [Accepted: 10/30/2015] [Indexed: 11/13/2022] Open
Abstract
Biostimulation with different nitrogen sources is often regarded as a strategy of choice in combating oil spills in marine environments. Such environments are typically depleted in nitrogen, therefore limiting the balanced microbial utilization of carbon-rich petroleum constituents. It is fundamental, yet only scarcely accounted for, to analyze the catabolic consequences of application of biostimulants. Here, we examined such alterations in enrichment microcosms using sediments from chronically crude oil-contaminated marine sediment at Ancona harbor (Italy) amended with natural fertilizer, uric acid (UA), or ammonium (AMM). We applied the web-based AromaDeg resource using as query Illumina HiSeq meta-sequences (UA: 27,893 open reading frames; AMM: 32,180) to identify potential catabolic differences. A total of 45 (for UA) and 65 (AMM) gene sequences encoding key catabolic enzymes matched AromaDeg, and their participation in aromatic degradation reactions could be unambiguously suggested. Genomic signatures for the degradation of aromatics such as 2-chlorobenzoate, indole-3-acetate, biphenyl, gentisate, quinoline and phenanthrene were common for both microcosms. However, those for the degradation of orcinol, ibuprofen, phenylpropionate, homoprotocatechuate and benzene (in UA) and 4-aminobenzene-sulfonate, p-cumate, dibenzofuran and phthalate (in AMM), were selectively enriched. Experimental validation was conducted and good agreement with predictions was observed. This suggests certain discrepancies in action of these biostimulants on the genomic content of the initial microbial community for the catabolism of petroleum constituents or aromatics pollutants. In both cases, the emerging microbial communities were phylogenetically highly similar and were composed by very same proteobacterial families. However, examination of taxonomic assignments further revealed different catabolic pathway organization at the organismal level, which should be considered for designing oil spill mitigation strategies in the sea.
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Affiliation(s)
- Rafael Bargiela
- Systems Biotechnology, Department of Biocatalysis, Institute of Catalysis, Consejo Superior de Investigaciones Científicas Madrid, Spain
| | | | | | - Francesca Mapelli
- Department of Food, Environmental and Nutritional Sciences, University of Milan Milan, Italy
| | | | - Daniele Daffonchio
- Department of Food, Environmental and Nutritional Sciences, University of Milan Milan, Italy ; Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology Thuwal, Saudi Arabia
| | | | - Manuel Ferrer
- Systems Biotechnology, Department of Biocatalysis, Institute of Catalysis, Consejo Superior de Investigaciones Científicas Madrid, Spain
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