Airborne simultaneous spectroscopic detection of laser-induced water Raman backscatter and fluorescence from chlorophyll a and other naturally occurring pigments

Good vibrations: Raman spectroscopy enables insights into plant biochemical composition

Non-invasive techniques are needed to enable an integrated understanding of plant metabolic responses to environmental stresses. Raman spectroscopy is one such technique, allowing non-destructive chemical characterisation of samples in situ and in vivo and resolving the chemical composition of plant material at scales from microns to metres. Here, we review Raman band assignments of pigments, structural and non-structural carbohydrates, lipids, proteins and secondary metabolites in plant material and consider opportunities this technology raises for studies in vascular plant physiology.

Label-free detection of thalassemia and other ROS impairing diseases

Pathogenesis of different diseases showed that some of them, especially thalassemia (T) and rheumatoid arthritis (RA) have an implicit association with oxidative stress and altered levels of reactive oxygen species (ROS). Introducing ROS level and the balance between ROS and antioxidants as essential metrics, an attempt was made to classify T and RA from normal individuals (treated as controls)(C) using synchronous fluorescence spectroscopy (SFS) and Raman line intensity of water. This non-invasive and label-free approach was backed up by a categorization algorithm that helped in the prediction of disease types from serum samples. The predictive system constituted principal component analysis (PCA) with four parameters, namely spectral intensity ratios of reduced nicotinamide adenine dinucleotide (NADH) to tryptophan (Trp) (NADH/Trp), kynurenine (Kyn) to tryptophan (Kyn/Trp), kynurenine to NADH (Kyn/NADH), and logarithmic changes in Raman line intensity of water (Rline), with the index headers containing the disease types. Rline has a positive correlation with both Kyn/Trp and Kyn/NADH and a negative correlation with NADH/Trp ratio, implying its direct or indirect association with oxidative stress. In addition to the classification of T, RA, and C a sub-classification of T into beta major and E-beta in their post and pre-splenectomized surgical stages could also be realized. Furthermore, receiver operating characteristic (ROC) analysis was deployed to ascertain that the misclassification error (ME) was negligible for the disease types. Graphical Abstract A schematic representation of the workflow converging into the categorical classification of disease classes.

Short-range remote sensing of water quality by a handheld fluorosensor system

Laser-induced fluorescence is a powerful measurement method for determining the concentration of organic pollutants as well as the amount of algae in water. It can be applied in remote sensing of natural waters and has the advantages of high speed and sensitivity. In this paper, we present a compact handheld fluorosensor system for water quality assessment. The power of the technique is demonstrated in measurements at a river system in South China.

Ultrafast Simultaneous Raman-Fluorescence Spectroscopy

Raman and fluorescence spectroscopies offer complementary approaches in bioanalytical chemistry, particularly in microbiological assays. The former method is used to detect lipids, metabolites, and nonspecific proteins and nucleic acids in a label-free manner, while the latter is used to investigate targeted proteins, nucleic acids, and their interactions via labeling or transfection. Despite their complementarity, these regimes are seldom used in conjunction due to fluorescent signals overwhelming inherently weak Raman signals by more than several orders of magnitude. Here we report a multimodal spectrometer that simultaneously performs Raman and fluorescence spectroscopies at high speed. It is made possible by Fourier-transform-coherent anti-Stokes Raman scattering (FT-CARS) and Fourier-transform-two-photon excitation (FT-TPE) measurements powered by a femtosecond pulse laser coupled to a homemade rapid-scan Michelson interferometer, operating at 24 000 spectra per second. As a proof-of-principle demonstration, we validate the ultrafast fluoRaman spectrometer by measuring coumarin dyes in organic solvents. To show its potential for applications that require rapid fluoRaman spectroscopy, we also demonstrate fluoRaman flow cytometry of Haematococcus pluvialis cells under varying culture conditions with a high throughput of ∼10 events per second to perform large-scale single-cell analysis of their metabolic stress response.

Remote sensing of solar-induced chlorophyll fluorescence (SIF) in vegetation: 50 years of progress

Remote sensing of solar-induced chlorophyll fluorescence (SIF) is a rapidly advancing front in terrestrial vegetation science, with emerging capability in space-based methodologies and diverse application prospects. Although remote sensing of SIF - especially from space - is seen as a contemporary new specialty for terrestrial plants, it is founded upon a multi-decadal history of research, applications, and sensor developments in active and passive sensing of chlorophyll fluorescence. Current technical capabilities allow SIF to be measured across a range of biological, spatial, and temporal scales. As an optical signal, SIF may be assessed remotely using highly-resolved spectral sensors and state-of-the-art algorithms to distinguish the emission from reflected and/or scattered ambient light. Because the red to far-red SIF emission is detectable non-invasively, it may be sampled repeatedly to acquire spatio-temporally explicit information about photosynthetic light responses and steady-state behaviour in vegetation. Progress in this field is accelerating with innovative sensor developments, retrieval methods, and modelling advances. This review distills the historical and current developments spanning the last several decades. It highlights SIF heritage and complementarity within the broader field of fluorescence science, the maturation of physiological and radiative transfer modelling, SIF signal retrieval strategies, techniques for field and airborne sensing, advances in satellite-based systems, and applications of these capabilities in evaluation of photosynthesis and stress effects. Progress, challenges, and future directions are considered for this unique avenue of remote sensing.

Sun-Induced Chlorophyll Fluorescence II: Review of Passive Measurement Setups, Protocols, and Their Application at the Leaf to Canopy Level

Imaging and non-imaging spectroscopy employed in the field and from aircraft is frequently used to assess biochemical, structural, and functional plant traits, as well as their dynamics in an environmental matrix. With the increasing availability of high-resolution spectroradiometers, it has become feasible to measure fine spectral features, such as those needed to estimate sun-induced chlorophyll fluorescence (F), which is a signal related to the photosynthetic process of plants. The measurement of F requires highly accurate and precise radiance measurements in combination with very sophisticated measurement protocols. Additionally, because F has a highly dynamic nature (compared with other vegetation information derived from spectral data) and low signal intensity, several environmental, physiological, and experimental aspects have to be considered during signal acquisition and are key for its reliable interpretation. The European Cooperation in Science and Technology (COST) Action ES1309 OPTIMISE has produced three articles addressing the main challenges in the field of F measurements. In this paper, which is the second of three, we review approaches that are available to measure F from the leaf to the canopy scale using ground-based and airborne platforms. We put specific emphasis on instrumental aspects, measurement setups, protocols, quality checks, and data processing strategies. Furthermore, we review existing techniques that account for atmospheric influences on F retrieval, address spatial scaling effects, and assess quality checks and the metadata and ancillary data required to reliably interpret retrieved F signals.

Characterization of the Light Field and Apparent Optical Properties in the Ocean Euphotic Layer Based on Hyperspectral Measurements of Irradiance Quartet

Although the light fields and apparent optical properties (AOPs) within the ocean euphotic layer have been studied for many decades through extensive measurements and theoretical modeling, there is virtually a lack of simultaneous high spectral resolution measurements of plane and scalar downwelling and upwelling irradiances (the so-called irradiance quartet). We describe a unique dataset of hyperspectral irradiance quartet, which was acquired under a broad range of environmental conditions within the water column from the near-surface depths to about 80 m in the Gulf of California. This dataset enabled the characterization of a comprehensive suite of AOPs for realistic non-uniform vertical distributions of seawater inherent optical properties (IOPs) and chlorophyll-a concentration (Chl) in the common presence of inelastic radiative processes within the water column, in particular Raman scattering by water molecules and chlorophyll-a fluorescence. In the blue and green spectral regions, the vertical patterns of AOPs are driven primarily by IOPs of seawater with weak or no discernible effects of inelastic processes. In the red, the light field and AOPs are strongly affected or totally dominated by inelastic processes of Raman scattering by water molecules, and additionally by chlorophyll-a fluorescence within the fluorescence emission band. The strongest effects occur in the chlorophyll-a fluorescence band within the chlorophyll-a maximum layer, where the average cosines of the light field approach the values of uniform light field, irradiance reflectance is exceptionally high approaching 1, and the diffuse attenuation coefficients for various irradiances are exceptionally low, including the negative values for the attenuation of upwelling plane and scalar irradiances. We established the empirical relationships describing the vertical patterns of some AOPs in the red spectral region as well as the relationships between some AOPs which can be useful in common experimental situations when only the downwelling plane irradiance measurements are available. We also demonstrated the applicability of irradiance quartet data in conjunction with Gershun’s equation for estimating the absorption coefficient of seawater in the blue-green spectral region, in which the effects of inelastic processes are weak or negligible.

Analysing the effect of paddy rice variety on fluorescence characteristics for nitrogen application monitoring

Paddy rice is one of the most important cereal crops worldwide, so it is very important to accurately monitor its growth status and photosynthetic efficiency. The nitrogen (N) level is a key factor closely related to crop growth. In this study, laser-induced fluorescence (LIF) technology combined with multi-variate analysis was applied to investigate the effect of paddy rice variety on N fertilizer level monitoring. Principal components analysis was conducted to extract the variables of the main fluorescence characteristics to identify N levels. Experimental results demonstrated that no nitrogen fertilizer can be completely identified for each paddy rice variety. In addition, other N levels can also be well classified based on the fluorescence characteristics. The relationship between the fluorescence ratio (F735/F685 : F735, and F685 denote the fluorescence intensity at 735 nm, and 685 nm, respectively) and leaf N content of different paddy rice varieties is also discussed. Experimental results revealed that LIF technology is an effective method of monitoring the N fertilizer and leaf biochemical components of paddy rice.

Spaceborne Lidar in the Study of Marine Systems

Satellite passive ocean color instruments have provided an unbroken ∼20-year record of global ocean plankton properties, but this measurement approach has inherent limitations in terms of spatial-temporal sampling and ability to resolve vertical structure within the water column. These limitations can be addressed by coupling ocean color data with measurements from a spaceborne lidar. Airborne lidars have been used for decades to study ocean subsurface properties, but recent breakthroughs have now demonstrated that plankton properties can be measured with a satellite lidar. The satellite lidar era in oceanography has arrived. Here, we present a review of the lidar technique, its applications in marine systems, a perspective on what can be accomplished in the near future with an ocean- and atmosphere-optimized satellite lidar, and a vision for a multiplatform virtual constellation of observational assets that would enable a three-dimensional reconstruction of global ocean ecosystems.

"Standoff Biofinder" for Fast, Noncontact, Nondestructive, Large-Area Detection of Biological Materials for Planetary Exploration

We developed a prototype instrument called the Standoff Biofinder, which can quickly locate biological material in a 500 cm(2) area from a 2 m standoff distance with a detection time of 0.1 s. All biogenic materials give strong fluorescence signals when excited with UV and visible lasers. In addition, the luminescence decay time of biogenic compounds is much shorter (<100 ns) than the micro- to millisecond decay time of transition metal ions and rare-earth ions in minerals and rocks. The Standoff Biofinder takes advantage of the short lifetime of biofluorescent materials to obtain real-time fluorescence images that show the locations of biological materials among luminescent minerals in a geological context. The Standoff Biofinder instrument will be useful for locating biological material during future NASA rover, lander, and crewed missions. Additionally, the instrument can be used for nondestructive detection of biological materials in unique samples, such as those obtained by sample return missions from the outer planets and asteroids. The Standoff Biofinder also has the capacity to detect microbes and bacteria on space instruments for planetary protection purposes.

KEY WORDS

Standoff Biofinder-Luminescence-Time-resolved fluorescence-Biofluorescence-Planetary exploration-Planetary protection-Noncontact nondestructive biodetection. Astrobiology 16, 715-729.

The characterization of plant species using first-derivative fluorescence spectra

Plants are one of the most important parts of the ecological system and demand a reliable method for accurate classification. In this study, the first-derivative fluorescence spectral curves (FDFSCs) based on laser-induced fluorescence technology were proposed for the characterization of plant species. The measurement system is mainly composed of a spectrometer, an excitation light source (the two excitation wavelengths are 460 and 556 nm, respectively), and an intensified charge-coupled device camera. FDFSCs were calculated from the deviation between the fluorescence values at each wavelength, plus and minus one band, divided by the wavelength range. Principal component analysis was utilized to analyze the FDFSCs by extracting the main attributes and reducing the dimensionality of variables. A support vector machine was used to evaluate FDFSC performance for the identification of plant species. Plant species that are difficult to distinguished by the naked eye, can be identified effectively using the proposed FDFSCs. For the 556 nm and 460 nm excitation wavelengths, the overall identification rates of the six plant species evaluated were 93.3% and 91.7%, respectively. Experimental results demonstrated that the combination of the FDFSCs with multivariate analysis could provide a simple and reliable method for the characterization of plant species.

Locating and classifying fluorescent tags behind turbid layers using time-resolved inversion

The use of fluorescent probes and the recovery of their lifetimes allow for significant advances in many imaging systems, in particular, medical imaging systems. Here we propose and experimentally demonstrate reconstructing the locations and lifetimes of fluorescent markers hidden behind a turbid layer. This opens the door to various applications for non-invasive diagnosis, analysis, flowmetry and inspection. The method is based on a time-resolved measurement that captures information about both fluorescence lifetime and spatial position of the probes. To reconstruct the scene, the method relies on a sparse optimization framework to invert time-resolved measurements. This wide-angle technique does not rely on coherence, and does not require the probes to be directly in line of sight of the camera, making it potentially suitable for long-range imaging.

Vegetation identification based on characteristics of fluorescence spectral spatial distribution

The PCIFSD were firstly utilized in plant species analysis. Plant species can be effortless distinguished using PCIFSD in this paper.

Development of a UV laser-induced fluorescence lidar for monitoring blue-green algae in Lake Suwa

We developed a UV (355 nm) laser-induced fluorescence (LIF) lidar for monitoring the real-time status of blue-green algae. Since the fluorescence spectrum of blue-green algae excited by 355 nm showed the specific fluorescence at 650 nm, the lidar was designed to be able to detect the 650 nm fluorescence as a surveillance method for the algae. The usefulness was confirmed by observation at Lake Suwa over four years (2005-2008). The detection limit of the LIF lidar was 16.65 mg/L for the blue-green algae, which is the range of concentrations in the safe level set by the World Health Organization.

Aquatic laser fluorescence analyzer: field evaluation in the northern Gulf of Mexico

The new Aquatic Laser Fluorescence Analyzer (ALFA) provides spectral and temporal measurements of laser-stimulated emission (LSE) for assessment of phytoplankton pigments, community structure, photochemical efficiency (PY), and chromophoric dissolved organic matter (CDOM). The instrument was deployed in the Northern Gulf of Mexico to evaluate the ALFA analytical capabilities across the estuarine-marine gradient. The robust relationships between the pigment fluorescence and independent pigment measurements were used to validate the ALFA analytical algorithms and calibrate the instrument. The maximal PY magnitudes, PYm = PY(1-1.35·10⁻⁴PAR⁻¹, were estimated using the underway measurements of PY and photosynthetically active radiation (PAR). The chlorophyll (Chl) spatial patterns were calculated using the ratio of Chl fluorescence to PY to eliminate the effect of non-photochemical quenching on the underway Chl assessments. These measurements have provided rich information about spatial distributions of Chl, PYm, CDOM, and phytoplankton community structure, and demonstrated the utility of the ALFA instrument for oceanographic studies and bio-environmental surveys. The data suggest that the fluorescence measurements with 514 nm excitation can provide informative data for characterization of the CDOM-rich fresh, estuarine, and coastal aquatic environments.

An instrument design for non-contact detection of biomolecules and minerals on Mars using fluorescence

We discuss fluorescence as a method to detect polycyclic aromatic hydrocarbons and other organic molecules, as well as minerals on the surface of Mars. We present an instrument design that is adapted from the ChemCam instrument which is currently on the Mars Science Lander Rover Curiosity and thus most of the primary components are currently flight qualified for Mars surface operations, significantly reducing development costs. The major change compared to ChemCam is the frequency multipliers of the 1064 nm laser to wavelengths suitable for fluorescence excitation (266 nm, 355 nm, and 532 nm). We present fluorescence spectrum for a variety of organics and minerals relevant to the surface of Mars. Preliminary results show minerals already known on Mars, such as perchlorate, fluoresce strongest when excited by 355 nm. Also we demonstrate that polycyclic aromatic hydrocarbons, such as those present in Martian meteorites, are highly fluorescent at wavelengths in the ultraviolet (266 nm, 355 nm), but not as much in the visible (532 nm). We conclude that fluorescence can be an important method for Mars applications and standoff detection of organics and minerals. The instrument approach described in this paper builds on existing hardware and offers high scientific return for minimal cost for future missions.

Field trial of a dual-wavelength fluorescent emission (L.I.F.E.) instrument and the Magma White rover during the MARS2013 Mars analog mission

Abstract We have developed a portable dual-wavelength laser fluorescence spectrometer as part of a multi-instrument optical probe to characterize mineral, organic, and microbial species in extreme environments. Operating at 405 and 532 nm, the instrument was originally designed for use by human explorers to produce a laser-induced fluorescence emission (L.I.F.E.) spectral database of the mineral and organic molecules found in the microbial communities of Earth's cryosphere. Recently, our team had the opportunity to explore the strengths and limitations of the instrument when it was deployed on a remote-controlled Mars analog rover. In February 2013, the instrument was deployed on board the Magma White rover platform during the MARS2013 Mars analog field mission in the Kess Kess formation near Erfoud, Morocco. During these tests, we followed tele-science work flows pertinent to Mars surface missions in a simulated spaceflight environment. We report on the L.I.F.E. instrument setup, data processing, and performance during field trials. A pilot postmission laboratory analysis determined that rock samples acquired during the field mission exhibited a fluorescence signal from the Sun-exposed side characteristic of chlorophyll a following excitation at 405 nm. A weak fluorescence response to excitation at 532 nm may have originated from another microbial photosynthetic pigment, phycoerythrin, but final assignment awaits development of a comprehensive database of mineral and organic fluorescence spectra. No chlorophyll fluorescence signal was detected from the shaded underside of the samples.

Analysis of spectral excitation for measurements of fluorescence constituents in natural waters

Field measurements of chlorophyll-a (Chl), phycoerythrin (PE), chromophoric dissolved organic matter (CDOM), and variable fluorescence (F(v)/F(m)) in diverse waters of the California Current, Mediterranean Sea and Gulf of Mexico using 375, 405, 510 and 532 nm laser excitation wavelengths (EW) are analyzed. EW = 375 and 405 nm were found more suitable for Chl assessment in high-Chl (> 10 μg/l) waters. Both EW = 532 and 510 nm can be used to efficiently stimulate PE fluorescence for structural characterization of phytoplankton communities. EW = 375 nm and 405 nm can provide best results for CDOM assessments in offshore oceanic waters; the green EWs can be also used for CDOM measurements in fresh and estuarine water types in conjunction with spectral discrimination between CDOM and PE fluorescence. Both EW = 405 and 510 are suitable for photo-physiological F(v)/F(m) assessments, though using EW = 405 nm may result in underestimation of PE-containing phytoplankton groups present in mixed phytoplankton assemblages.

Next generation Advanced Laser Fluorometry (ALF) for characterization of natural aquatic environments: new instruments

The new optical design allows single- or multi-wavelength excitation of laser-stimulated emission (LSE), provides optimized LSE optical collection for spectral and temporal analyses, and incorporates swappable modules for flow-through and small-volume sample measurements. The basic instrument configuration uses 510 nm laser excitation for assessments of chlorophyll-a, phycobiliprotein pigments, variable fluorescence (F(v)/F(m)) and chromophoric dissolved organic matter (CDOM) in CDOM-rich waters. The three-laser instrument configuration (375, 405, and 510 nm excitation) provides additional Fv/Fm measurements with 405 nm excitation, CDOM assessments in a broad concentration range, and potential for spectral discrimination between oil and CDOM fluorescence. The new measurement protocols, analytical algorithms and examples of laboratory and field measurements are discussed.

Genesis and evolution of polarization of light in the ocean [invited]

The radiative transfer of sunlight through the deep oceans of the world is a complex and only partially solved environmental optical problem. Empirically, in situ systematic measurements of key parameters such as polarization of deep open seawater have been very sparse in recent decades. Although we have the necessary equation of transfer to solve this complex problem, until it can be solved explicitly, only approximations and partial analytic solutions are possible in addition to some successful computer modeling. Further complexity is added by the diversity of researchers' interests from academic to international policy making, as well as the ineffective communication between the different disciplines concerned, ranging from mathematics to endangered species. As a result, isolated focused pockets of good data and theory have been developed in recent decades without the needed breadth of understanding. This present review intends to bring together some visual biology and optical physics in order to understand the role of polarization in navigation, communication, and identification of marine animals as well as a possible tool for remotely sensing underwater objects.

Photo-physiological variability in phytoplankton chlorophyll fluorescence and assessment of chlorophyll concentration

Photo-physiological variability of in vivo chlorophyll fluorescence (CF) per unit of chlorophyll concentration (CC) is analyzed using a biophysical model to improve the accuracy of CC assessments. Field measurements of CF and photosystem II (PSII) photochemical yield (PY) with the Advanced Laser Fluorometer (ALF) in the Delaware and Chesapeake Bays are analyzed vs. high-performance liquid chromatography (HPLC) CC retrievals. It is shown that isolation from ambient light, PSII saturating excitation, optimized phytoplankton exposure to excitation, and phytoplankton dark adaptation may provide accurate in vivo CC fluorescence measurements (R2 = 0.90-0.95 vs. HPLC retrievals). For in situ or flow-through measurements that do not allow for dark adaptation, concurrent PY measurements can be used to adjust for CF non-photochemical quenching (NPQ) and improve the accuracy of CC fluorescence assessments. Field evaluation has shown the NPQ-invariance of CF/PY and CF(PY-1-1) parameters and their high correlation with HPLC CC retrievals (R2 = 0.74-0.96), while the NPQ-affected CF measurements correlated poorly with CC (R2 = -0.22).

Mineral-microbe interactions in deep-sea hydrothermal systems: a challenge for Raman spectroscopy

In deep-sea hydrothermal environments, steep chemical and thermal gradients, rapid and turbulent mixing and biologic processes produce a multitude of diverse mineral phases and foster the growth of a variety of chemosynthetic micro-organisms. Many of these microbial species are associated with specific mineral phases, and the interaction of mineral and microbial processes are of only recently recognized importance in several areas of hydrothermal research. Many submarine hydrothermal mineral phases form during kinetically limited reactions and are either metastable or are only thermodynamically stable under in situ conditions. Laser Raman spectroscopy is well suited to mineral speciation measurements in the deep sea in many ways, and sea-going Raman systems have been built and used to make a variety of in situ measurements. However, the full potential of this technique for hydrothermal science has yet to be realized. In this focused review, we summarize both the need for in situ mineral speciation measurements in hydrothermal research and the development of sea-going Raman systems to date; we describe the rationale for further development of a small, low-cost sea-going Raman system optimized for mineral identification that incorporates a fluorescence-minimizing design; and we present three experimental applications that such a tool would enable.

Laser-induced fluorescence emission (L.I.F.E.): in situ nondestructive detection of microbial life in the ice covers of Antarctic lakes

Laser-induced fluorescence emission (L.I.F.E.) images were obtained in situ following 532 nm excitation of cryoconite assemblages in the ice covers of annual and perennially frozen Antarctic lakes during the 2008 Tawani International Expedition to Schirmacher Oasis and Lake Untersee in Dronning Maud Land, Antarctica. Laser targeting of a single millimeter-scale cryoconite results in multiple neighboring excitation events secondary to ice/air interface reflection and refraction in the bubbles surrounding the primary target. Laser excitation at 532 nm of cyanobacteria-dominated assemblages produced red and infrared autofluorescence activity attributed to the presence of phycoerythrin photosynthetic pigments. The method avoids destruction of individual target organisms and does not require the disruption of either the structure of the microbial community or the surrounding ice matrix. L.I.F.E. survey strategies described may be of interest for orbital monitoring of photosynthetic primary productivity in polar and alpine glaciers, ice sheets, snow, and lake ice of Earth's cryosphere. The findings open up the possibility of searching from either a rover or from orbit for signs of life in the polar regions of Mars and the frozen regions of exoplanets in neighboring star systems.

New trends in telescopic remote Raman spectroscopic instrumentation

Raman spectroscopy is a powerful analytical technique in many areas of research for several reasons. These include the sensitivity to small structural changes, non-invasive sampling capability, minimal sample preparation, narrow line widths of Raman lines, and high spatial resolution in the case of micro-Raman spectroscopy. Advancements in lasers, spectrographs and holographic optical components have made Raman spectroscopy an effective tool for analyzing natural and synthetic materials. These advances have led to the development of both in situ Raman spectroscopy and telescopic remote Raman spectroscopy for a lander or rover for planetary exploration. A telescopic Raman spectroscopic system capable of measuring Raman spectra of minerals, inorganic and organic chemicals, and biogenic materials to radial distances in the range 10-100 m has been developed. In this work, the author reviews the current status of telescopic remote Raman spectroscopic instrumentation and examines new trends in the field of remote Raman spectroscopy and its combination with time-resolved remote laser-induced native fluorescence (LINF) and laser-induced breakdown spectroscopy (LIBS), and their applications in earth and planetary science.

Fungus covered insulator materials studied with laser-induced fluorescence and principal component analysis

A method combining laser-induced fluorescence and principal component analysis to detect and discriminate between algal and fungal growth on insulator materials has been studied. Eight fungal cultures and four insulator materials have been analyzed. Multivariate classifications were utilized to characterize the insulator material, and fungal growth could readily be distinguished from a clean surface. The results of the principal component analyses make it possible to distinguish between algae infected, fungi infected, and clean silicone rubber materials. The experiments were performed in the laboratory using a fiber-optic fluorosensor that consisted of a nitrogen laser and an optical multi-channel analyzer system.

Chlorophyll biomass in the global oceans: airborne lidar retrieval using fluorescence of both chlorophyll and chromophoric dissolved organic matter

For three decades airborne laser-induced fluorescence has demonstrated value for chlorophyll biomass retrieval in wide-area oceanic field experiments, satellite validation, and algorithm development. A new chlorophyll biomass retrieval theory is developed using laser-induced and water Raman normalized fluorescence of both (a) chlorophyll and (b) chromophoric dissolved organic matter (CDOM). This airborne lidar retrieval theory is then independently confirmed by chlorophyll biomass obtained from concurrent (1) ship-cruise retrievals, (2) satellite inherent optical property (IOP) biomass retrievals, and (3) satellite standard band-ratio chlorophyll biomass retrievals. The new airborne lidar chlorophyll and CDOM fluorescence-based chlorophyll biomass retrieval is found to be more robust than prior lidar methods that used chlorophyll fluorescence only. Future research is recommended to further explain the underlying influence of CDOM on chlorophyll production.

Retrieving seawater-backscattering profiles from coupling Raman and elastic lidar data

We propose a technique for retrieving seawater-backscattering profiles that is based on the joint use of elastic and Raman lidar returns. We suggest using two lidar channels: the Raman channel and the elastic channel with a light frequency equal to a half-sum of initial and Raman-shifted frequencies of the Raman channel. These specific wavelengths provide the same attenuation laws for elastic and Raman signals if absorption and scattering spectra can be approximated by a power law. In particular, seawater supplies such a possibility in the region of 400-500 nm if extremely bioproductive waters are not considered and the chlorophyll absorption peak at 440 nm does not come out of the background of dissolved organic matter absorption. With these specific initial wavelengths, the elastic and Raman lidar returns differ only in the backscattering coefficients. Because the Raman-backscattering coefficient is constant along the profile, the (elastic-to-Raman) ratio of these lidar returns directly produces the profile of the elastic-backscattering coefficient. This technique stays valid even under multiple-scattering conditions, which is of great importance for seawater sounding.

Next-Generation NASA Airborne Oceanographic Lidar System

The complete design and flight test of the next-generation Airborne Oceanographic Lidar (AOL-3) is detailed. The application of new technology has allowed major reductions in weight, volume, and power requirements compared with the earlier AOL sensor. Subsystem designs for the new AOL sensor include new technology in fiber optics, spectrometer detector optical train, miniature photomultiplier modules, dual-laser wavelength excitation from a single small laser source, and new receiver optical configuration. The new design reduced telescope size and maintained the same principal fluorescence and water Raman bands but essentially retained a comparable measurement accuracy. A major advancement is the implementation of single-laser simultaneous excitation of two physically separate oceanic target areas: one stimulated by 532 nm and the other by 355 nm. Backscattered fluorescence and Raman signals from both targets are acquired simultaneously by use of the same telescope and spectrometer-detector system. Two digital oscilloscopes provide temporal- and depth-resolved data from each of seven spectral emission bands.

Satellite retrieval of the absorption coefficient of phytoplankton phycoerythrin pigment: theory and feasibility status

Oceanic radiance model inversion methods are used to develop a comprehensive algorithm for retrieval of the absorption coefficients of phycourobilin (PUB) pigment, type I phycoerythrobilin (PEB) pigment rich in PUB, and type II PEB deficient in PUB pigment (together with the usual "big three" inherent optical properties: the total backscattering coefficient and the absorption coefficients of chromophoric dissolved organic matter (CDOM)-detritus and phytoplankton). This fully modeled inversion algorithm is then simplified to yield a hybrid modeled-unmodeled inversion algorithm in which the phycoerythrin (PE) absorption coefficient is retrieved as unmodeled 488-nm absorption (which exceeds the modeled phytoplankton and the CDOM-detritus absorption coefficients). Each algorithm was applied to water-leaving radiances, but only hybrid modeled-unmodeled inversions yielded viable retrievals of the PE absorption coefficient. Validation of the PE absorption coefficient retrieval was achieved by relative comparison with airborne laser-induced PEB fluorescence. The modeled-unmodeled retrieval of four inherent optical properties by direct matrix inversion is rapid and well conditioned, but the accuracy is strongly limited by the accuracy of the three principal inherent optical property models across all four spectral bands. Several research areas are identified to enhance the radiance-model-based retrievals: (a) improved PEB and PUB absorption coefficient models, (b) PE spectral shifts induced by PUB chromophore substitution at chromophore binding sites, (c) specific absorption-sensitive phytoplankton absorption modeling, (d) total constituent backscattering modeling, (e) unmodeled carotinoid and phycocyanin absorption that are not now accounted for in the chlorophyll-dominated phytoplankton absorption coefficient model, and (f) iterative inversion techniques to solve for six constituents with only five radiances. Although considerable progress has been made toward the satellite recovery of PE absorption, the maturity of the retrieval is presently insufficient for routine global application. Instead it must currently be used on a regional basis where localized ship and aircraft validation can be made available. The algorithm was developed for the MODIS (Moderate-Resolution Imaging Spectroradiometer) sensor but is applicable to any sensor having comparable band locations.

Satellite retrieval of inherent optical properties by inversion of an oceanic radiance model: a preliminary algorithm

A previously published radiance model inversion theory has been field tested by using airborne water-leaving radiances to retrieve the chromophoric dissolved organic matter (CDOM) and detritus absorption coefficient, the phytoplankton absorption coefficient, and the total backscattering coefficient. The radiance model inversion theory was tested for potential satellite use by comparing two of the retrieved inherent optical properties with concurrent airborne laser-derived truth data. It was found that (1) matrix inversion of water-leaving radiances is well conditioned even in the presence of instrument-induced noise, (2) retrieved CDOM and detritus and phytoplankton absorption coefficients are both in reasonable agreement with absorption coefficients derived from airborne laser-induced fluorescence spectral emissions, (3) the total backscattering retrieval magnitude and variability are consistent with expected values for the Middle Atlantic Bight, and (4) the algorithm performs reasonably well in Sargasso Sea, Gulf Stream, slope, and shelf waters but is less consistent in coastal waters.

Spatial variability of oceanic phycoerythrin spectral types derived from airborne laser-induced fluorescence emissions

We report spatial variability of oceanic phycoerythrin spectral types detected by means of a blue spectral shift in airborne laser-induced fluorescence emission. The blue shift of the phycoerythrobilin fluorescence is known from laboratory studies to be induced by phycourobilin chromophore substitution at phycoerythrobilin chromophore sites in some strains of phycoerythrin-containing marine cyanobacteria. The airborne 532-nm laser-induced phycoerythrin fluorescence of the upper oceanic volume showed distinct segregation of cyanobacterial chromophore types in a flight transect from coastal water to the Sargasso Sea in the western North Atlantic. High phycourobilin levels were restricted to the oceanic (oligotrophic) end of the flight transect, in agreement with historical ship findings. These remotely observed phycoerythrin spectral fluorescence shifts have the potential to permit rapid, wide-area studies of the spatial variability of spectrally distinct cyanobacteria, especially across interfacial regions of coastal and oceanic water masses. Airborne laser-induced phytoplankton spectral fluorescence observations also further the development of satellite algorithms for passive detection of phytoplankton pigments. Optical modifications to the NASA Airborne Oceanographic Lidar are briefly described that permitted observation of the fluorescence spectral shifts.

Airborne laser-induced oceanic chlorophyll fluorescence: solar-induced quenching corrections by use of concurrent downwelling irradiance measurements

Airborne laser-induced (and water Raman-normalized) spectral fluorescence emissions from oceanic chlorophyll were obtained during variable downwelling irradiance conditions induced by diurnal variability and patchy clouds. Chlorophyll fluorescence profiles along geographically repeated inbound and outbound flight track lines, separated in time by approximately 3-6 h and subject to overlying cloud movement, were found to be identical after corrections made with concurrent downwelling irradiance measurements. The corrections were accomplished by a mathematical model containing an exponential of the ratio of the instantaneous-to-average downwelling irradiance. Concurrent laser-induced phycoerythrin fluorescence and chromophoric dissolved organic matter fluorescence were found to be invariant to downwelling irradiance and thus, along with sea-surface temperature, established the near constancy of the oceanic surface layer during the experiment and validated the need for chlorophyll fluorescence quenching corrections over wide areas of the ocean.

In situ measurements of Raman scattering in clear ocean water

We have further developed and improved the prototype oceanic Fraunhofer line discriminator by using a well-protected fiber-optic-wire cable and in-water electronic housing. We conducted a series of in situ measurements in clear ocean water in the Florida Straits. By comparing the reduced data with the Monte Carlo simulation results, we verify the Raman scattering coefficient B(r) with an excitation wavelength at 488 nm to be 2.6 x 10(-4) m(-1) [Appl. Opt. 29, 71-84 (1990)], as opposed to 14.4 x 10(-4) m(-1) [Appl. Opt.14, 2116-2120 (1975)]. The wavelength dependence of the Raman scattering coefficient is found to have an insignificant effect on the in-water light field. We also discuss factors that lead to errors. This study can be used as a basis for inelastic light scattering in the radiative transfer theory and will allow other inelastic light, e.g., fluorescence, to be detected with in situ measurements.

Inherent optical properties of the ocean: retrieval of the absorption coefficient of chromophoric dissolved organic matter from airborne laser spectral fluorescence measurements

The absorption coefficient of chromophoric dissolved organic matter (CDOM) at 355 nm has been retrieved from airborne laser-induced and water Raman-normalized CDOM fluorescence. Four combined airborne and ship field experiments have demonstrated that (1) the airborne CDOM fluorescence-to--water Raman ratio is linearly related to concurrent quinine-sulfate-standardized CDOM shipboard fluorescence measurements over a wide range of water masses (coastal to blue water); (2) the vicarious calibration of the airborne fluorosensor in units traceable to a fluorescence standard can be established and then maintained over an extended time period by tungsten lamp calibration; (3) the vicariously calibrated airborne CDOM fluorescence-to-water Raman ratio can be directly applied to previously developed shipboard fluorescence-to-absorption algorithms to retrieve CDOM absorption; and (4) the retrieval is not significantly affected by long-path multiple scattering, differences in attenuation at the excitation and emission wavelengths, or measurement in the 180° backscatter configuration. Airborne CDOM absorption measurements will find immediate application to (a) forward and inverse modeling of oceanic water-leaving radiance and (b) validation of satellite-retrieved products such as CDOM absorption.

Oceanic radiance model development and validation: application of airborne active-passive ocean color spectral measurements

It is shown that airborne active-passive (laser-solar) ocean color data can be used to develop and validate oceanic radiance models. The two principal inputs to the oceanic radiance model, chlorophyll pigment and incident solar irradiance, are obtained from a nadir-viewing laser-induced fluorescence spectrometer and a zenith-viewing radiometer, respectively. The computed water-leaving radiances are validated by comparison with the calibrated output of a separate nadir-viewing radiometer subsystem. In the North Atlantic Ocean, the calculated and the observed airborne radiances are found to compare very favorably for the 443-, 520-, and 550-nm wavelengths over an ∼ 170-km flight track east of St. John's, Newfoundland. The results further suggest that the semianalytical radiance model of ocean color, the airborne active (laser) fluorescence spectrometer, and the passive (solar) radiometric instrumentation are all remarkably precise.

Fluorescence lidar multicolor imaging of vegetation

Multicolor imaging of vegetation fluorescence following laser excitation is reported for distances of 50 m. A mobile laser-radar system equipped with a Nd:YAG laser transmitter and a 40-cm-diameter telescope was utilized. The laser light was Raman shifted to 397 nm with pulse energies of ˜ 30 mJ. An image-intensified CCD camera with a specially designed split-mirror Cassegrainian telescope was utilized for the simultaneous recording of fluorescence images of leaves and branches in four different spectral bands. Additionally, fluorescence spectra at selected points within the detection area were measured with an image-intensified diode array system. Image processing permits extraction of information related to the physiological status of the vegetation and might prove useful in forest decline research.

In situ monitoring of ocean chlorophyll via laser-induced fluorescence backscattering through an optical fiber

The first seagoing test of a prototype laser/fiber-optic system for in situ detection of ocean chlorophyll fluorescence is described. Radiation at 488 nm originating from a shipboard argon laser was transmitted through 20 of 200-microm core optical fiber to the distal tip mounted on the microstructure profiler, the Rapid Sampling Vertical Profiler. The backscattered fluorescence emission signal was collected through the same fiber and processed on board ship. A series of measurements indicated that (1) successful isolation of shipinduced vibrations could be achieved using our optical bench framework to maintain optical alignments; (2) ambient chlorophyll concentrations could be detected in situ; (3) a Raman scattering signal from water could also be detected and should provide an internal standard against which chlorophyll fluorescence may be calibrated.

Airborne lidar detection of subsurface oceanic scattering layers

The airborne lidar detection and cross-sectional mapping of submerged oceanic scattering layers are reported. The field experiment was conducted in the Atlantic Ocean southeast of Assateague Island, VA. NASA's Airborne Oceanographic Lidar was operated in the bathymetric mode to acquire on-wavelength 532-nm depth-resolved backscatter signals from shelf/slope waters. Unwanted laser pulse reflection from the airwater interface was minimized by spatial filtering and off-nadir operation. The presence of thermal stratification over the shelf was verified by the deployment of airborne expendable bathythermographs. Optical beam transmission measurements acquired from a surface truthing vessel indicated the presence of a layer of turbid water near the sea floor over the inner portion of the shelf.

Optical modeling of clear ocean light fields: Raman scattering effects

A Monte Carlo simulation (the NORDA optical model) and the Three-Parameter Model of the submarine light field are used to analyze the effect of water Raman emission at 520 nm in clear ocean waters. Reported optical anomalies for clear ocean waters at longer wavelengths (520 nm +) are explained by the effects of water Raman emission, and the simulation results are confirmed by Biowatt-NORDA observations made in the Sargasso Sea. A new optical parametrization for clear ocean water is proposed.