1
|
Nelmark CE, Serrano AL. A Simple Doublet Lens Design for Mid-Infrared Imaging. APPLIED SPECTROSCOPY 2024:37028241250030. [PMID: 38693755 DOI: 10.1177/00037028241250030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2024]
Abstract
Wide-field mid-infrared (MIR) hyperspectral imaging offers a promising approach for studying heterogeneous chemical systems due to its ability to independently characterize the molecular properties of different regions of a sample. However, applications of wide-field MIR microscopy are limited to spatial resolutions no better than ∼1 μm. While methods exist to overcome the classical diffraction limit of ∼λ/2, chromatic aberration from transmissive imaging reduces the achievable resolution. Here we describe the design and implementation of a simple MIR achromatic lens combination that we believe will aid in the development of resolution-enhanced wide-field MIR hyperspectral optical and chemical absorption imaging. We also examine the use of this doublet lens to image through polystyrene microspheres, an emerging and simple means for enhancing spatial resolution.
Collapse
Affiliation(s)
- Claire E Nelmark
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana, USA
| | - Arnaldo L Serrano
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana, USA
| |
Collapse
|
2
|
Bhargava R. Digital Histopathology by Infrared Spectroscopic Imaging. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2023; 16:205-230. [PMID: 37068745 PMCID: PMC10408309 DOI: 10.1146/annurev-anchem-101422-090956] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Infrared (IR) spectroscopic imaging records spatially resolved molecular vibrational spectra, enabling a comprehensive measurement of the chemical makeup and heterogeneity of biological tissues. Combining this novel contrast mechanism in microscopy with the use of artificial intelligence can transform the practice of histopathology, which currently relies largely on human examination of morphologic patterns within stained tissue. First, this review summarizes IR imaging instrumentation especially suited to histopathology, analyses of its performance, and major trends. Second, an overview of data processing methods and application of machine learning is given, with an emphasis on the emerging use of deep learning. Third, a discussion on workflows in pathology is provided, with four categories proposed based on the complexity of methods and the analytical performance needed. Last, a set of guidelines, termed experimental and analytical specifications for spectroscopic imaging in histopathology, are proposed to help standardize the diversity of approaches in this emerging area.
Collapse
Affiliation(s)
- Rohit Bhargava
- Department of Bioengineering; Department of Electrical and Computer Engineering; Department of Mechanical Science and Engineering; Department of Chemical and Biomolecular Engineering; Department of Chemistry; Cancer Center at Illinois; and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA;
| |
Collapse
|
3
|
Brès CS, Della Torre A, Grassani D, Brasch V, Grillet C, Monat C. Supercontinuum in integrated photonics: generation, applications, challenges, and perspectives. NANOPHOTONICS 2023; 12:1199-1244. [PMID: 36969949 PMCID: PMC10031268 DOI: 10.1515/nanoph-2022-0749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Revised: 01/20/2023] [Accepted: 01/27/2023] [Indexed: 06/18/2023]
Abstract
Frequency conversion in nonlinear materials is an extremely useful solution to the generation of new optical frequencies. Often, it is the only viable solution to realize light sources highly relevant for applications in science and industry. In particular, supercontinuum generation in waveguides, defined as the extreme spectral broadening of an input pulsed laser light, is a powerful technique to bridge distant spectral regions based on single-pass geometry, without requiring additional seed lasers or temporal synchronization. Owing to the influence of dispersion on the nonlinear broadening physics, supercontinuum generation had its breakthrough with the advent of photonic crystal fibers, which permitted an advanced control of light confinement, thereby greatly improving our understanding of the underlying phenomena responsible for supercontinuum generation. More recently, maturing in fabrication of photonic integrated waveguides has resulted in access to supercontinuum generation platforms benefiting from precise lithographic control of dispersion, high yield, compact footprint, and improved power consumption. This Review aims to present a comprehensive overview of supercontinuum generation in chip-based platforms, from underlying physics mechanisms up to the most recent and significant demonstrations. The diversity of integrated material platforms, as well as specific features of waveguides, is opening new opportunities, as will be discussed here.
Collapse
Affiliation(s)
- Camille-Sophie Brès
- Photonic Systems Laboratory (PHOSL), Ecole Polytechnique Fédérale de Lausanne, 1015Lausanne, Switzerland
| | - Alberto Della Torre
- Université de Lyon, Institut des Nanotechnologies de Lyon (INL) UMR CNRS 5270, Ecole Centrale de Lyon, 69131Ecully, France
| | - Davide Grassani
- Centre Suisse d’Electronique et de Microtechnique (CSEM), 2000Neuchâtel, Switzerland
| | | | - Christian Grillet
- Université de Lyon, Institut des Nanotechnologies de Lyon (INL) UMR CNRS 5270, Ecole Centrale de Lyon, 69131Ecully, France
| | - Christelle Monat
- Université de Lyon, Institut des Nanotechnologies de Lyon (INL) UMR CNRS 5270, Ecole Centrale de Lyon, 69131Ecully, France
| |
Collapse
|
4
|
Diffraction-limited hyperspectral mid-infrared single-pixel microscopy. Sci Rep 2023; 13:281. [PMID: 36609672 PMCID: PMC9822906 DOI: 10.1038/s41598-022-26718-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 12/19/2022] [Indexed: 01/09/2023] Open
Abstract
In this contribution, we demonstrate a wide-field hyperspectral mid-infrared (MIR) microscope based on multidimensional single-pixel imaging (SPI). The microscope employs a high brightness MIR supercontinuum source for broadband (1.55 [Formula: see text]-4.5 [Formula: see text]) sample illumination. Hyperspectral imaging capability is achieved by a single micro-opto-electro-mechanical digital micromirror device (DMD), which provides both spatial and spectral differentiation. For that purpose the operational spectral bandwidth of the DMD was significantly extended into the MIR spectral region. In the presented design, the DMD fulfills two essential tasks. On the one hand, as standard for the SPI approach, the DMD sequentially masks captured scenes enabling diffraction-limited imaging in the tens of millisecond time-regime. On the other hand, the diffraction at the micromirrors leads to dispersion of the projected field and thus allows for wavelength selection without the application of additional dispersive optical elements, such as gratings or prisms. In the experimental part, first of all, the imaging and spectral capabilities of the hyperspectral microscope are characterized. The spatial and spectral resolution is assessed by means of test targets and linear variable filters, respectively. At a wavelength of 4.15 [Formula: see text] a spatial resolution of 4.92 [Formula: see text] is achieved with a native spectral resolution better than 118.1 nm. Further, a post-processing method for drastic enhancement of the spectral resolution is proposed and discussed. The performance of the MIR hyperspectral microsopce is demonstrated for label-free chemical imaging and examination of polymer compounds and red blood cells. The acquisition and reconstruction of Hadamard sampled 64 [Formula: see text] 64 images is achieved in 450 ms and 162 ms, respectively. Thus, combined with an unprecedented intrinsic flexibiliy gained by a tunable field of view and adjustable spatial resolution, the demonstrated design drastically improves the sample throughput in MIR chemical and biomedical imaging.
Collapse
|
5
|
A mid-infrared lab-on-a-chip for dynamic reaction monitoring. Nat Commun 2022; 13:4753. [PMID: 35963870 PMCID: PMC9376098 DOI: 10.1038/s41467-022-32417-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Accepted: 07/29/2022] [Indexed: 11/08/2022] Open
Abstract
Mid-infrared spectroscopy is a sensitive and selective technique for probing molecules in the gas or liquid phase. Investigating chemical reactions in bio-medical applications such as drug production is recently gaining particular interest. However, monitoring dynamic processes in liquids is commonly limited to bulky systems and thus requires time-consuming offline analytics. In this work, we show a next-generation, fully-integrated and robust chip-scale sensor for online measurements of molecule dynamics in a liquid solution. Our fingertip-sized device utilizes quantum cascade technology, combining the emitter, sensing section and detector on a single chip. This enables real-time measurements probing only microliter amounts of analyte in an in situ configuration. We demonstrate time-resolved device operation by analyzing temperature-induced conformational changes of the model protein bovine serum albumin in heavy water. Quantitative measurements reveal excellent performance characteristics in terms of sensor linearity, wide coverage of concentrations, extending from 0.075 mg ml-1 to 92 mg ml-1 and a 55-times higher absorbance than state-of-the-art bulky and offline reference systems.
Collapse
|
6
|
Tong HT, Koumura A, Nakatani A, Nguyen HPT, Matsumoto M, Sakai G, Suzuki T, Ohishi Y. Chalcogenide all-solid hybrid microstructured optical fiber with polarization maintaining properties and its mid-infrared supercontinuum generation. OPTICS EXPRESS 2022; 30:25433-25449. [PMID: 36237074 DOI: 10.1364/oe.459745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Accepted: 06/02/2022] [Indexed: 06/16/2023]
Abstract
In this paper, we report a successful fabrication of a highly nonlinear chalcogenide all-solid hybrid microstructured optical fiber with polarization maintaining properties and a mid-infrared SC generation. Up to 4.5 × 10-4 at 10 µm of the fiber birefringence can be realized by employing a single As2Se3 core and two As2S5 rods horizontally aligned in the AsSe2 cladding. The fiber possesses a near-zero and flattened all-normal chromatic dispersion profile over the wavelength range from 5 to 10 µm. The polarization maintaining properties of the fiber is experimentally confirmed and a broadband supercontinuum spectrum from 2 to 10 µm in the mid-infrared window was experimentally demonstrated.
Collapse
|
7
|
Mid-infrared supercontinuum-based Fourier transform spectroscopy for plasma analysis. Sci Rep 2022; 12:9642. [PMID: 35688925 PMCID: PMC9187747 DOI: 10.1038/s41598-022-13787-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Accepted: 05/27/2022] [Indexed: 11/21/2022] Open
Abstract
Broadband mid-infrared (MIR) spectroscopy is a well-established and valuable diagnostic technique for reactive plasmas. Plasmas are complex systems and consist of numerous (reactive) types of molecules; it is challenging to measure and control reaction specificity with a good sensitivity. Here, we demonstrate the first use of a novel MIR supercontinuum (SC) source for quantitative plasma spectroscopy. The SC source has a wide spectral coverage of 1300–2700 cm−1 (wavelength range 3.7–7.7 μm), thus enabling broadband multispecies detection. The high spatial coherence of the MIR SC source provides long interaction path lengths, thereby increasing the sensitivity for molecular species. The combination of such a SC source with a custom-built FTIR spectrometer (0.1 cm−1 spectral resolution) allows detection of various gases with high spectral resolution. We demonstrate its potential in plasma applications by accurate identification and quantification of a variety of reaction products (e.g. nitrogen oxides and carbon oxides) under low-pressure conditions, including the molecular species with overlapping absorbance features (e.g. acetone, acetaldehyde, formaldehyde, etc.).
Collapse
|
8
|
Eslami Z, Salmela L, Filipkowski A, Pysz D, Klimczak M, Buczynski R, Dudley JM, Genty G. Two octave supercontinuum generation in a non-silica graded-index multimode fiber. Nat Commun 2022; 13:2126. [PMID: 35440639 PMCID: PMC9018909 DOI: 10.1038/s41467-022-29776-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Accepted: 03/21/2022] [Indexed: 11/15/2022] Open
Abstract
The generation of a two-octave supercontinuum from the visible to mid-infrared (700-2800 nm) in a non-silica graded-index multimode fiber is reported. The fiber design is based on a nanostructured core comprised of two types of drawn lead-bismuth-gallate glass rods with different refractive indices. This yields an effective parabolic index profile and ten times increased nonlinearity when compared to silica fibers. Using femtosecond pulse pumping at wavelengths in both normal and anomalous dispersion regimes, a detailed study is carried out into the supercontinuum generating mechanisms and instabilities seeded by periodic self-imaging. Significantly, suitable injection conditions in the high power regime are found to result in the output beam profile showing clear signatures of beam self-cleaning from nonlinear mode mixing. Experimental observations are interpreted using spatio-temporal 3+1D numerical simulations of the generalized nonlinear Schrödinger equation, and simulated spectra are in excellent agreement with experiment over the full two-octave spectral bandwidth. Experimental comparison with the generation of supercontinuum in a silica graded-index multimode fiber shows that the enhanced nonlinear refractive index of the lead-bismuth-gallate fiber yields a spectrum with a significantly larger bandwidth. These results demonstrate a new pathway towards the generation of bright, ultrabroadband light sources in the mid-infrared.
Collapse
Affiliation(s)
- Zahra Eslami
- Photonics Laboratory, Physics Unit, Tampere University, 33014, Tampere, Finland
| | - Lauri Salmela
- Photonics Laboratory, Physics Unit, Tampere University, 33014, Tampere, Finland
| | - Adam Filipkowski
- Łukasiewicz Research Network - Institute of Microelectronics and Photonics, 02-668, Warsaw, Poland
- University of Warsaw, Faculty of Physics, 02-093, Warsaw, Poland
| | - Dariusz Pysz
- Łukasiewicz Research Network - Institute of Microelectronics and Photonics, 02-668, Warsaw, Poland
| | - Mariusz Klimczak
- University of Warsaw, Faculty of Physics, 02-093, Warsaw, Poland
| | - Ryszard Buczynski
- Łukasiewicz Research Network - Institute of Microelectronics and Photonics, 02-668, Warsaw, Poland
- University of Warsaw, Faculty of Physics, 02-093, Warsaw, Poland
| | - John M Dudley
- Institut FEMTO-ST, Université Bourgogne Franche-Comté CNRS UMR 6174, 25000, Besançon, France
| | - Goëry Genty
- Photonics Laboratory, Physics Unit, Tampere University, 33014, Tampere, Finland.
| |
Collapse
|
9
|
Dong C, Richardson LT, Solouki T, Murray KK. Infrared Laser Ablation Microsampling with a Reflective Objective. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2022; 33:463-470. [PMID: 35104132 PMCID: PMC8895455 DOI: 10.1021/jasms.1c00306] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Revised: 01/19/2022] [Accepted: 01/20/2022] [Indexed: 06/14/2023]
Abstract
A Schwarzschild reflective objective with a numerical aperture of 0.3 and working distance of 10 cm was used for laser ablation sampling of tissue for off-line mass spectrometry. The objective focused the laser to a diameter of 5 μm and produced 10 μm ablation spots on thin ink films and tissue sections. Rat brain tissue sections 50 μm thick were ablated in transmission geometry, and the ablated material was captured in a microcentrifuge tube containing solvent. Proteins from ablated tissue sections were quantified with a Bradford assay, which indicated that approximately 300 ng of protein was captured from a 1 mm2 area of ablated tissue. Areas of tissue ranging from 0.01 to 1 mm2 were ablated and captured for bottom-up proteomics. Proteins were extracted from the captured tissue and digested for liquid chromatography tandem mass spectrometry (LC-MS/MS) analysis for peptide and protein identification.
Collapse
Affiliation(s)
- Chao Dong
- Department
of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | - Luke T. Richardson
- Department
of Chemistry and Biochemistry, Baylor University, Waco, Texas 76706, United States
| | - Touradj Solouki
- Department
of Chemistry and Biochemistry, Baylor University, Waco, Texas 76706, United States
| | - Kermit K. Murray
- Department
of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| |
Collapse
|
10
|
Gattinger P, Zorin I, Ebner A, Rankl C, Brandstetter M. Mid-infrared DMD-based spectral-coding spectroscopy with a supercontinuum laser source. OPTICS EXPRESS 2022; 30:6440-6449. [PMID: 35209582 DOI: 10.1364/oe.452221] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2021] [Accepted: 02/03/2022] [Indexed: 06/14/2023]
Abstract
We present a mid-infrared spectroscopic system based on a spectral-coding approach enabled by a modified digital micromirror device (DMD). A supercontinuum source offering a confined mid-infrared laser beam is employed to perform gas measurements with this system. The performance, flexibility, and programmability enabled by the DMD is experimentally demonstrated by gas-cell measurements (CO2, CH4, N2O, NO2 and CO). Full spectra are acquired in 14 ms at 10 nm spectral resolution and in 3.5 ms at 40 nm spectral resolution. Further, we employ the system for stand-off open-path spatially resolved CO2 measurements that fully exploit the laser emission properties - the bright and highly-collimated supercontinuum beam is scanned by a galvo mirror over a retroreflector array at a scalable remote distance. The measurement concept models a passing gas emitter under lab conditions; time and spatially resolved CO2 absorbance gas-plume images in the mid-infrared range are obtained.
Collapse
|
11
|
Zorin I, Gattinger P, Ebner A, Brandstetter M. Advances in mid-infrared spectroscopy enabled by supercontinuum laser sources. OPTICS EXPRESS 2022; 30:5222-5254. [PMID: 35209491 DOI: 10.1364/oe.447269] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Accepted: 12/15/2021] [Indexed: 06/14/2023]
Abstract
Supercontinuum sources are all-fiber pulsed laser-driven systems that provide high power spectral densities within ultra-broadband spectral ranges. The tailored process of generating broadband, bright, and spectrally flat supercontinua-through a complex interplay of linear and non-linear processes-has been recently pushed further towards longer wavelengths and has evolved enough to enter the field of mid-infrared (mid-IR) spectroscopy. In this work, we review the current state and perspectives of this technology that offers laser-like emission properties and instantaneous broadband spectral coverage comparable to thermal emitters. We aim to go beyond a literature review. Thus, we first discuss the basic principles of supercontinuum sources and then provide an experimental part focusing on the quantification and analysis of intrinsic emission properties such as typical power spectral densities, brightness levels, spectral stability, and beam quality (to the best of the authors' knowledge, the M2 factor for a mid-IR supercontinuum source is characterized for the first time). On this basis, we identify key competitive advantages of these alternative emitters for mid-IR spectroscopy over state-of-the-art technologies such as thermal sources or quantum cascade lasers. The specific features of supercontinuum radiation open up prospects of improving well-established techniques in mid-IR spectroscopy and trigger developments of novel analytical methods and instrumentation. The review concludes with a structured summary of recent advances and applications in various routine mid-IR spectroscopy scenarios that have benefited from the use of supercontinuum sources.
Collapse
|
12
|
Ebner A, Zimmerleiter R, Hingerl K, Brandstetter M. Towards Real-Time In-Situ Mid-Infrared Spectroscopic Ellipsometry in Polymer Processing. Polymers (Basel) 2021; 14:7. [PMID: 35012030 PMCID: PMC8747145 DOI: 10.3390/polym14010007] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Revised: 12/16/2021] [Accepted: 12/18/2021] [Indexed: 01/13/2023] Open
Abstract
Recent developments in mid-infrared (MIR) spectroscopic ellipsometry enabled by quantum cascade lasers (QCLs) have resulted in a drastic improvement in signal-to-noise ratio compared to conventional thermal emitter based instrumentation. Thus, it was possible to reduce the acquisition time for high-resolution broadband ellipsometric spectra from multiple hours to less than 1 s. This opens up new possibilities for real-time in-situ ellipsometry in polymer processing. To highlight these evolving capabilities, we demonstrate the benefits of a QCL based MIR ellipsometer by investigating single and multilayered polymer films. The molecular structure and reorientation of a 2.5 µm thin biaxially oriented polyethylene terephthalate film is monitored during a stretching process lasting 24.5 s to illustrate the perspective of ellipsometric measurements in dynamic processes. In addition, a polyethylene/ethylene vinyl alcohol/polyethylene multilayer film is investigated at a continuously varying angle of incidence (0∘- 50∘) in 17.2 s, highlighting an unprecedented sample throughput for the technique of varying angle spectroscopic ellipsometry in the MIR spectral range. The obtained results underline the superior spectral and temporal resolution of QCL ellipsometry and qualify this technique as a suitable method for advanced in-situ monitoring in polymer processing.
Collapse
Affiliation(s)
- Alexander Ebner
- RECENDT—Research Center for Non-Destructive Testing GmbH, 4040 Linz, Austria; (A.E.); (R.Z.)
| | - Robert Zimmerleiter
- RECENDT—Research Center for Non-Destructive Testing GmbH, 4040 Linz, Austria; (A.E.); (R.Z.)
| | - Kurt Hingerl
- Center for Surface and Nanoanalytics, Johannes Kepler University, 4040 Linz, Austria;
| | - Markus Brandstetter
- RECENDT—Research Center for Non-Destructive Testing GmbH, 4040 Linz, Austria; (A.E.); (R.Z.)
| |
Collapse
|
13
|
Spectral-Coding-Based Compressive Single-Pixel NIR Spectroscopy in the Sub-Millisecond Regime. SENSORS 2021; 21:s21165563. [PMID: 34451004 PMCID: PMC8401756 DOI: 10.3390/s21165563] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Revised: 08/13/2021] [Accepted: 08/14/2021] [Indexed: 11/16/2022]
Abstract
In this contribution, we present a high-speed, multiplex, grating spectrometer based on a spectral coding approach that is founded on principles of compressive sensing. The spectrometer employs a single-pixel InGaAs detector to measure the signals encoded by an amplitude spatial light modulator (digital micromirror device, DMD). This approach leads to a speed advantage and multiplex sensitivity advantage atypical for standard dispersive systems. Exploiting the 18.2 kHz pattern rate of the DMD, we demonstrated 4.2 ms acquisition times for full spectra with a bandwidth of 450 nm (5250–4300 cm−1; 1.9–2.33 µm). Due to the programmability of the DMD, spectral regions of interest can be chosen freely, thus reducing acquisition times further, down to the sub-millisecond regime. The adjustable resolving power of the system accessed by means of computer simulations is discussed, quantified for different measurement modes, and verified by comparison with a state-of-the-art Fourier-transform infrared spectrometer. We show measurements of characteristic polymer absorption bands in different operation regimes of the spectrometer. The theoretical multiplex advantage of 8 was experimentally verified by comparison of the noise behavior of the spectral coding approach and a standard line-scan approach.
Collapse
|
14
|
Rapid brain structure and tumour margin detection on whole frozen tissue sections by fast multiphotometric mid-infrared scanning. Sci Rep 2021; 11:11307. [PMID: 34050224 PMCID: PMC8163866 DOI: 10.1038/s41598-021-90777-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Accepted: 05/17/2021] [Indexed: 01/31/2023] Open
Abstract
Frozen section analysis is a frequently used method for examination of tissue samples, especially for tumour detection. In the majority of cases, the aim is to identify characteristic tissue morphologies or tumour margins. Depending on the type of tissue, a high number of misdiagnoses are associated with this process. In this work, a fast spectroscopic measurement device and workflow was developed that significantly improves the speed of whole frozen tissue section analyses and provides sufficient information to visualize tissue structures and tumour margins, dependent on their lipid and protein molecular vibrations. That optical and non-destructive method is based on selected wavenumbers in the mid-infrared (MIR) range. We present a measuring system that substantially outperforms a commercially available Fourier Transform Infrared (FT-IR) Imaging system, since it enables acquisition of reduced spectral information at a scan field of 1 cm2 in 3 s, with a spatial resolution of 20 µm. This allows fast visualization of segmented structure areas with little computational effort. For the first time, this multiphotometric MIR system is applied to biomedical tissue sections. We are referencing our novel MIR scanner on cryopreserved murine sagittal and coronal brain sections, especially focusing on the hippocampus, and show its usability for rapid identification of primary hepatocellular carcinoma (HCC) in mouse liver.
Collapse
|
15
|
Zorin I, Su R, Heise B, Lendl B, Brandstetter M. Correlative infrared optical coherence tomography and hyperspectral chemical imaging. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2020; 37:B19-B26. [PMID: 32902416 DOI: 10.1364/josaa.393580] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Accepted: 06/01/2020] [Indexed: 06/11/2023]
Abstract
Optical coherence tomography (OCT) is a high-resolution three-dimensional imaging technique that enables nondestructive measurements of surface and subsurface microstructures. Recent developments of OCT operating in the mid-infrared (MIR) range (around 4 µm) lifted fundamental scattering limitations and initiated applied material research in formerly inaccessible fields. The MIR spectral region, however, is also of great interest for spectroscopy and hyperspectral imaging, which allow highly selective and sensitive chemical studies of materials. In this contribution, we introduce an OCT system (dual-band, central wavelengths of 2 µm and 4 µm) combined with MIR spectroscopy that is implemented as a raster scanning chemical imaging modality. The fully integrated and cost-effective optical instrument is based on a single supercontinuum laser source (emission spectrum spanning from 1.1 µm to 4.4 µm). Capabilities of the in situ correlative measurements are experimentally demonstrated by obtaining complex multidimensional material data, comprising morphological and chemical information, from a multilayered composite ceramic-polymer specimen.
Collapse
|
16
|
Knez D, Hanninen AM, Prince RC, Potma EO, Fishman DA. Infrared chemical imaging through non-degenerate two-photon absorption in silicon-based cameras. LIGHT, SCIENCE & APPLICATIONS 2020; 9:125. [PMID: 32704358 PMCID: PMC7371741 DOI: 10.1038/s41377-020-00369-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Revised: 06/30/2020] [Accepted: 07/08/2020] [Indexed: 05/08/2023]
Abstract
Chemical imaging based on mid-infrared (MIR) spectroscopic contrast is an important technique with a myriad of applications, including biomedical imaging and environmental monitoring. Current MIR cameras, however, lack performance and are much less affordable than mature Si-based devices, which operate in the visible and near-infrared regions. Here, we demonstrate fast MIR chemical imaging through non-degenerate two-photon absorption (NTA) in a standard Si-based charge-coupled device (CCD). We show that wide-field MIR images can be obtained at 100 ms exposure times using picosecond pulse energies of only a few femtojoules per pixel through NTA directly on the CCD chip. Because this on-chip approach does not rely on phase matching, it is alignment-free and does not necessitate complex postprocessing of the images. We emphasize the utility of this technique through chemically selective MIR imaging of polymers and biological samples, including MIR videos of moving targets, physical processes and live nematodes.
Collapse
Affiliation(s)
- David Knez
- Department of Chemistry, University of California, Irvine, CA 92697 USA
| | - Adam M. Hanninen
- Department of Chemistry, University of California, Irvine, CA 92697 USA
| | - Richard C. Prince
- Department of Biomedical Engineering, University of California, Irvine, CA 92697 USA
| | - Eric O. Potma
- Department of Chemistry, University of California, Irvine, CA 92697 USA
- Department of Biomedical Engineering, University of California, Irvine, CA 92697 USA
| | - Dmitry A. Fishman
- Department of Chemistry, University of California, Irvine, CA 92697 USA
| |
Collapse
|
17
|
Nguyen HPT, Tuan TH, Xing L, Matsumoto M, Sakai G, Suzuki T, Ohishi Y. Supercontinuum generation in a chalcogenide all-solid hybrid microstructured optical fiber. OPTICS EXPRESS 2020; 28:17539-17555. [PMID: 32679961 DOI: 10.1364/oe.394968] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2020] [Accepted: 05/04/2020] [Indexed: 06/11/2023]
Abstract
We report the fabrication of a chalcogenide all-solid hybrid microstructured optical fiber and its application in supercontinuum generation for the first time, to the best of our knowledge. The fiber possesses all-normal and flattened chromatic dispersion, making it highly potential for broad and coherent supercontinuum generation. By pumping the fiber with a femtosecond laser at 3, 4, and 5 μm, broad supercontinua with good spectral flatness are generated. The broadest SC spectrum extending from 2.2 to 10 μm at -20 dB level was obtained when the fiber was pumped at 5 μm with an input power of 3.9 mW.
Collapse
|
18
|
Kwarkye K, Jensen M, Engelsholm RD, Dasa MK, Jain D, Bowen P, Moselund PM, Petersen CR, Bang O. In-amplifier and cascaded mid-infrared supercontinuum sources with low noise through gain-induced soliton spectral alignment. Sci Rep 2020; 10:8230. [PMID: 32427972 PMCID: PMC7237674 DOI: 10.1038/s41598-020-65150-6] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Accepted: 04/28/2020] [Indexed: 11/18/2022] Open
Abstract
The pulse-to-pulse relative intensity noise (RIN) of near-infrared (near-IR) in-amplifier supercontinuum (SC) sources and mid-IR cascaded SC sources was experimentally and numerically investigated and shown to have significantly lowered noise due to the fundamental effect of gain-induced soliton-spectral alignment. The mid-IR SC source is based on a near-IR in-amplifier SC pumping a cascade of thulium-doped and ZBLAN fibers. We demonstrate that the active thulium-doped fiber not only extend the spectrum, but also to significantly reduce the RIN by up to 22% in the long wavelength region above 2 μm. Using numerical simulations, we demonstrate that the noise reduction is the result of an interplay between absorption-emission processes and nonlinear soliton dynamics leading to the soliton-spectral alignment. In the same way we show that the RIN of the near-IR in-amplifier SC source is already significantly reduced because the spectral broadening takes place in an active fiber that also introduces soliton-spectral alignment. We further show that the low noise properties are transferred to the subsequent fluoride SC, which has a RIN lower than 10% (5%) in a broad region from 1.1-3.6 μm (1.4-3.0 μm). The demonstrated low noise significantly improves the applicability of these broadband sources for mid-IR imaging and spectroscopy.
Collapse
Affiliation(s)
- Kyei Kwarkye
- DTU Fotonik, Department of Photonics Engineering, Technical University of Denmark, 2800, Kgs. Lyngby, Denmark.
| | - Mikkel Jensen
- DTU Fotonik, Department of Photonics Engineering, Technical University of Denmark, 2800, Kgs. Lyngby, Denmark
| | | | - Manoj K Dasa
- DTU Fotonik, Department of Photonics Engineering, Technical University of Denmark, 2800, Kgs. Lyngby, Denmark
| | - Deepak Jain
- School of Physics, Sydney Nano Institute, University of Sydney, Sydney, 2006, NSW, Australia
| | - Patrick Bowen
- NKT Photonics A/S, Blokken 84, 3460, Birkerød, Denmark
| | | | - Christian R Petersen
- DTU Fotonik, Department of Photonics Engineering, Technical University of Denmark, 2800, Kgs. Lyngby, Denmark
- NORBLIS IVS, Virumgade 35D, 2830, Virum, Denmark
| | - Ole Bang
- DTU Fotonik, Department of Photonics Engineering, Technical University of Denmark, 2800, Kgs. Lyngby, Denmark
- NKT Photonics A/S, Blokken 84, 3460, Birkerød, Denmark
- NORBLIS IVS, Virumgade 35D, 2830, Virum, Denmark
| |
Collapse
|
19
|
Zorin I, Kilgus J, Duswald K, Lendl B, Heise B, Brandstetter M. Sensitivity-Enhanced Fourier Transform Mid-Infrared Spectroscopy Using a Supercontinuum Laser Source. APPLIED SPECTROSCOPY 2020; 74:485-493. [PMID: 32096412 DOI: 10.1177/0003702819893364] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Fourier transform infrared (FT-IR) spectrometers have been the dominant technology in the field of mid-infrared (mid-IR) spectroscopy for decades. Supercontinuum laser sources operating in the mid-IR spectral region now offer the potential to enrich the field of FT-IR spectroscopy due to their distinctive properties, such as high-brightness, broadband spectral coverage and enhanced stability. In our contribution, we introduce this advanced light source as a replacement for conventional thermal emitters. Furthermore, an approach to efficient coupling of pulsed mid-IR supercontinuum sources to FT-IR spectrometers is proposed and considered in detail. The experimental part is devoted to pulse-to-pulse energy fluctuations of the applied supercontinuum laser, performance of the system, as well as the noise and long-term stability. Comparative measurements performed with a conventional FT-IR instrument equipped with a thermal emitter illustrate that similar noise levels can be achieved with the supercontinuum-based system. The analytical performance of the supercontinuum-based FT-IR spectrometer was tested for a concentration series of aqueous formaldehyde solutions in a liquid flow cell (500 µm path length) and compared with the conventional FT-IR (130 µm path length). The results show a four-times-enhanced detection limit due to the extended path length enabled by the high brightness of the laser. In conclusion, FT-IR spectrometers equipped with novel broadband mid-IR supercontinuum lasers could outperform traditional systems providing superior performance, e.g., interaction path lengths formerly unattainable, while maintaining low noise levels known from highly stable thermal emitters.
Collapse
Affiliation(s)
- Ivan Zorin
- Research Center for Non-Destructive Testing, Linz, Austria
| | - Jakob Kilgus
- Research Center for Non-Destructive Testing, Linz, Austria
| | | | - Bernhard Lendl
- Institute for Chemical Technologies and Analytics, TU Wien, Vienna, Austria
| | - Bettina Heise
- Research Center for Non-Destructive Testing, Linz, Austria
| | | |
Collapse
|
20
|
Zorin I, Gattinger P, Brandstetter M, Heise B. Dual-band infrared optical coherence tomography using a single supercontinuum source. OPTICS EXPRESS 2020; 28:7858-7874. [PMID: 32225421 DOI: 10.1364/oe.386398] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Accepted: 02/22/2020] [Indexed: 06/10/2023]
Abstract
Recent developments and commercial availability of low-noise and bright infrared (IR) supercontinuum sources initiated intensive applied research in the last few years. Covering a significant part of near- and mid-infrared spectral ranges, supercontinuum radiation opened up unique possibilities and alternatives for the well-established imaging technique of optical coherence tomography (OCT). In this contribution, we demonstrate the development, performance, and maturity of a cost-efficient dual-band Fourier-domain IR OCT system (2 µm and 4 µm central wavelengths). The proposed OCT setup is elegantly employing a single supercontinuum source and a pyroelectric linear array. We discuss adapted application-oriented approaches to signal acquisition and post-processing when thermal detectors are applied in interferometers. In the experimental part, the efficiency of the dual-band detection is evaluated. Practical results and direct comparisons of the OCT system operating within the employed sub-bands are exhibited and discussed. Furthermore, we introduce the 2 µm OCT sub-system as an affordable alternative for art diagnosis; therefore, high resolution and sensitive measurements of the painting mock-ups are presented. Finally, potentials of the dual-band detection are demonstrated for lithography-based manufactured industrial ceramics.
Collapse
|
21
|
Probeless non-invasive near-infrared spectroscopic bioprocess monitoring using microspectrometer technology. Anal Bioanal Chem 2019; 412:2103-2109. [PMID: 31802180 PMCID: PMC7072045 DOI: 10.1007/s00216-019-02227-w] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2019] [Revised: 10/17/2019] [Accepted: 10/21/2019] [Indexed: 12/28/2022]
Abstract
Real-time measurements and adjustments of critical process parameters are essential for the precise control of fermentation processes and thus for increasing both quality and yield of the desired product. However, the measurement of some crucial process parameters such as biomass, product, and product precursor concentrations usually requires time-consuming offline laboratory analysis. In this work, we demonstrate the in-line monitoring of biomass, penicillin (PEN), and phenoxyacetic acid (POX) in a Penicilliumchrysogenum fed-batch fermentation process using low-cost microspectrometer technology operating in the near-infrared (NIR). In particular, NIR reflection spectra were taken directly through the glass wall of the bioreactor, which eliminates the need for an expensive NIR immersion probe. Furthermore, the risk of contaminations in the reactor is significantly reduced, as no direct contact with the investigated medium is required. NIR spectra were acquired using two sensor modules covering the spectral ranges 1350–1650 nm and 1550–1950 nm. Based on offline reference analytics, partial least squares (PLS) regression models were established for biomass, PEN, and POX either using data from both sensors separately or jointly. The established PLS models were tested on an independent validation fed-batch experiment. Root mean squared errors of prediction (RMSEP) were 1.61 g/L, 1.66 g/L, and 0.67 g/L for biomass, PEN, and POX, respectively, which can be considered an acceptable accuracy comparable with previously published results using standard process spectrometers with immersion probes. Altogether, the presented results underpin the potential of low-cost microspectrometer technology in real-time bioprocess monitoring applications. Graphical abstract ![]()
Collapse
|
22
|
Ebner A, Zimmerleiter R, Cobet C, Hingerl K, Brandstetter M, Kilgus J. Sub-second quantum cascade laser based infrared spectroscopic ellipsometry. OPTICS LETTERS 2019; 44:3426-3429. [PMID: 31305539 DOI: 10.1364/ol.44.003426] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2019] [Accepted: 06/05/2019] [Indexed: 05/20/2023]
Abstract
Laser-based infrared spectroscopic ellipsometry (SE) is demonstrated for the first time, to the best of our knowledge, by applying a tunable quantum cascade laser (QCL) as a mid-infrared light source. The fast tunability of the employed QCL, combined with phase-modulated polarization, enabled the acquisition of broadband (900-1204 cm-1), high-resolution (1 cm-1) ellipsometry spectra in less than 1 second. A comparison to a conventional Fourier-transform spectrometer-based IR ellipsometer resulted in an improved signal-to-noise ratio (SNR) by a factor of at least 290. The ellipsometry setup was finally applied for the real-time monitoring of molecular reorientation during the stretching process of an anisotropic polypropylene film, thereby illustrating the advantage of sub-second time resolution. The developed method exceeds existing instrumentation by its fast acquisition and high SNR, which could open up a set of new applications of SE such as ellipsometric inline process monitoring and quality control.
Collapse
|
23
|
Gattinger P, Kilgus J, Zorin I, Langer G, Nikzad-Langerodi R, Rankl C, Gröschl M, Brandstetter M. Broadband near-infrared hyperspectral single pixel imaging for chemical characterization. OPTICS EXPRESS 2019; 27:12666-12672. [PMID: 31052805 DOI: 10.1364/oe.27.012666] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Accepted: 04/01/2019] [Indexed: 06/09/2023]
Abstract
We introduce a compressive sensing based approach for single pixel hyperspectral chemical imaging in a broad spectral range in the near-infrared. Fully integrated MEMS based Fabry-Pérot tunable filter spectrometers and a digital micro-mirror device were employed to achieve spectral and spatial resolution, respectively. The available spectral range from 1500 to 2200 nm covers molecular overtone vibrations enabling chemical identification. Hyperspectral images of different adhesives deposited on a textile were recorded revealing their chemical composition. Furthermore, spectrally resolved near-infrared images with compression rates up to 90% are presented. The approach of single pixel imaging illustrates a promising technology for the infrared spectral range superior to conventionally used costly focal plane arrays.
Collapse
|
24
|
Zorin I, Su R, Prylepa A, Kilgus J, Brandstetter M, Heise B. Mid-infrared Fourier-domain optical coherence tomography with a pyroelectric linear array. OPTICS EXPRESS 2018; 26:33428-33439. [PMID: 30645495 DOI: 10.1364/oe.26.033428] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2018] [Accepted: 11/17/2018] [Indexed: 06/09/2023]
Abstract
Optical technology in the mid-infrared wavelength range is currently a rapidly developing field initiated by the availability of novel high-power and spatially coherent sources. Non-destructive testing techniques based on these sources are very promising for industrial and medical applications. However, there are still many engineering problems due to the technical challenges and high prices of the optical elements suitable for the mid-infrared region. In this paper, we report the development and performances of the first mid-infrared Fourier-domain optical coherence tomography based on a supercontinuum source and low-cost pyroelectric detector. The system is designed to operate in the spectral region around 4 μm. Experimental results are demonstrated for detections of embedded microstructures in ceramic materials and subsurface oil paint layers.
Collapse
|