1
|
Rodríguez C, Pan D, Natan RG, Mohr MA, Miao M, Chen X, Northen TR, Vogel JP, Ji N. Adaptive optical third-harmonic generation microscopy for in vivo imaging of tissues. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.02.592275. [PMID: 38746456 PMCID: PMC11092640 DOI: 10.1101/2024.05.02.592275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2024]
Abstract
Third-harmonic generation microscopy is a powerful label-free nonlinear imaging technique, providing essential information about structural characteristics of cells and tissues without requiring external labelling agents. In this work, we integrated a recently developed compact adaptive optics module into a third-harmonic generation microscope, to measure and correct for optical aberrations in complex tissues. Taking advantage of the high sensitivity of the third-harmonic generation process to material interfaces and thin membranes, along with the 1,300-nm excitation wavelength used here, our adaptive optical third-harmonic generation microscope enabled high-resolution in vivo imaging within highly scattering biological model systems. Examples include imaging of myelinated axons and vascular structures within the mouse spinal cord and deep cortical layers of the mouse brain, along with imaging of key anatomical features in the roots of the model plant Brachypodium distachyon. In all instances, aberration correction led to significant enhancements in image quality.
Collapse
Affiliation(s)
- Cristina Rodríguez
- Department of Physics, University of California, Berkeley, CA, USA
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
- Present address: Department of Biomedical Engineering, Yale University, New Haven, CT, USA
| | - Daisong Pan
- Department of Physics, University of California, Berkeley, CA, USA
| | - Ryan G. Natan
- Department of Physics, University of California, Berkeley, CA, USA
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Manuel A. Mohr
- Department of Biology, Stanford University, Stanford, CA, USA
- Present address: Yale Ventures, Yale University, New Haven, CT, USA
| | - Max Miao
- Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Xiaoke Chen
- Department of Biology, Stanford University, Stanford, CA, USA
| | - Trent R. Northen
- Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - John P. Vogel
- Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Na Ji
- Department of Physics, University of California, Berkeley, CA, USA
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
- Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA
- Helen Wills Neuroscience Institute, University of California, Berkeley, CA, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| |
Collapse
|
2
|
Goswami N, Winston N, Choi W, Lai NZE, Arcanjo RB, Chen X, Sobh N, Nowak RA, Anastasio MA, Popescu G. EVATOM: an optical, label-free, machine learning assisted embryo health assessment tool. Commun Biol 2024; 7:268. [PMID: 38443460 PMCID: PMC10915136 DOI: 10.1038/s42003-024-05960-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 02/22/2024] [Indexed: 03/07/2024] Open
Abstract
The combination of a good quality embryo and proper maternal health factors promise higher chances of a successful in vitro fertilization (IVF) procedure leading to clinical pregnancy and live birth. Of these two factors, selection of a good embryo is a controllable aspect. The current gold standard in clinical practice is visual assessment of an embryo based on its morphological appearance by trained embryologists. More recently, machine learning has been incorporated into embryo selection "packages". Here, we report EVATOM: a machine-learning assisted embryo health assessment tool utilizing an optical quantitative phase imaging technique called artificial confocal microscopy (ACM). We present a label-free nucleus detection method with, to the best of our knowledge, novel quantitative embryo health biomarkers. Two viability assessment models are presented for grading embryos into two classes: healthy/intermediate (H/I) or sick (S) class. The models achieve a weighted F1 score of 1.0 and 0.99 respectively on the in-distribution test set of 72 fixed embryos and a weighted F1 score of 0.9 and 0.95 respectively on the out-of-distribution test dataset of 19 time-instances from 8 live embryos.
Collapse
Affiliation(s)
- Neha Goswami
- Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
- Beckman Institute of Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
| | - Nicola Winston
- Division of Reproductive Endocrinology and Infertility, Department of Obstetrics and Gynecology, University of Illinois at Chicago College of Medicine, Chicago, IL, 60612, USA
| | - Wonho Choi
- Department of Animal Sciences, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
| | - Nastasia Z E Lai
- Department of Animal Sciences, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
| | - Rachel B Arcanjo
- Department of Animal Sciences, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
- Department of Animal Science, University of California, Davis, CA, 95616, USA
| | - Xi Chen
- Beckman Institute of Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
- School of Applied and Engineering Physics, Cornell University, Ithaca, NY, 14850, USA
| | - Nahil Sobh
- NCSA Center for Artificial Intelligence Innovation, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
| | - Romana A Nowak
- Department of Animal Sciences, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
| | - Mark A Anastasio
- Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
- Beckman Institute of Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
- Department of Electrical and Computer Engineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
| | - Gabriel Popescu
- Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
- Beckman Institute of Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
- Department of Electrical and Computer Engineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
| |
Collapse
|
3
|
Goswami N, Winston N, Choi W, Lai NZE, Arcanjo RB, Chen X, Sobh N, Nowak RA, Anastasio MA, Popescu G. Machine learning assisted health viability assay for mouse embryos with artificial confocal microscopy (ACM). BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.07.30.550591. [PMID: 37547014 PMCID: PMC10402120 DOI: 10.1101/2023.07.30.550591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/08/2023]
Abstract
The combination of a good quality embryo and proper maternal health factors promise higher chances of a successful in vitro fertilization (IVF) procedure leading to clinical pregnancy and live birth. Of these two factors, selection of a good embryo is a controllable aspect. The current gold standard in clinical practice is visual assessment of an embryo based on its morphological appearance by trained embryologists. More recently, machine learning has been incorporated into embryo selection "packages". Here, we report a machine-learning assisted embryo health assessment tool utilizing a quantitative phase imaging technique called artificial confocal microscopy (ACM). We present a label-free nucleus detection method with novel quantitative embryo health biomarkers. Two viability assessment models are presented for grading embryos into two classes: healthy/intermediate (H/I) or sick (S) class. The models achieve a weighted F1 score of 1.0 and 0.99 respectively on the in-distribution test set of 72 fixed embryos and a weighted F1 score of 0.9 and 0.95 respectively on the out-of-distribution test dataset of 19 time-instances from 8 live embryos.
Collapse
|
4
|
Martínez-Ojeda RM, Mugnier LM, Artal P, Bueno JM. Blind deconvolution of second harmonic microscopy images of the living human eye. BIOMEDICAL OPTICS EXPRESS 2023; 14:2117-2128. [PMID: 37206134 PMCID: PMC10191662 DOI: 10.1364/boe.486989] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Revised: 03/17/2023] [Accepted: 03/19/2023] [Indexed: 05/21/2023]
Abstract
Second harmonic generation (SHG) imaging microscopy of thick biological tissues is affected by the presence of aberrations and scattering within the sample. Moreover, additional problems, such as uncontrolled movements, appear when imaging in-vivo. Deconvolution methods can be used to overcome these limitations under some conditions. In particular, we present here a technique based on a marginal blind deconvolution approach for improving SHG images obtained in vivo in the human eye (cornea and sclera). Different image quality metrics are used to quantify the attained improvement. Collagen fibers in both cornea and sclera are better visualized and their spatial distributions accurately assessed. This might be a useful tool to better discriminate between healthy and pathological tissues, especially those where changes in collagen distribution occur.
Collapse
Affiliation(s)
- Rosa M. Martínez-Ojeda
- Laboratorio de Óptica,
Instituto Universitario de Investigación en
Óptica y Nanofísica, Universidad de
Murcia, Campus de Espinardo (Ed. 34), 30100 Murcia, Spain
| | | | - Pablo Artal
- Laboratorio de Óptica,
Instituto Universitario de Investigación en
Óptica y Nanofísica, Universidad de
Murcia, Campus de Espinardo (Ed. 34), 30100 Murcia, Spain
| | - Juan M. Bueno
- Laboratorio de Óptica,
Instituto Universitario de Investigación en
Óptica y Nanofísica, Universidad de
Murcia, Campus de Espinardo (Ed. 34), 30100 Murcia, Spain
| |
Collapse
|
5
|
Sohmen M, Muñoz-Bolaños JD, Rajaeipour P, Ritsch-Marte M, Ataman Ç, Jesacher A. Optofluidic adaptive optics in multi-photon microscopy. BIOMEDICAL OPTICS EXPRESS 2023; 14:1562-1578. [PMID: 37078059 PMCID: PMC10110297 DOI: 10.1364/boe.481453] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Revised: 02/02/2023] [Accepted: 02/06/2023] [Indexed: 05/03/2023]
Abstract
Adaptive optics, in combination with multi-photon techniques, is a powerful approach to image deep into a specimen. Remarkably, virtually all adaptive optics schemes today rely on wavefront modulators that are reflective, diffractive or both. This, however, can pose a severe limitation for applications. Here, we present a fast and robust sensorless adaptive optics scheme adapted for transmissive wavefront modulators. We study our scheme in numerical simulations and in experiments with a novel, optofluidic wavefront shaping device that is transmissive, refractive, polarisation-independent, and broadband. We demonstrate scatter correction of two-photon-excited fluorescence images of microbeads as well as brain cells and benchmark our device against a liquid-crystal spatial light modulator. Our method and technology could open new routes for adaptive optics in scenarios where previously, the restriction to reflective and diffractive devices may have staggered innovation and progress.
Collapse
Affiliation(s)
- Maximilian Sohmen
- Institute for Biomedical Physics, Medical University of Innsbruck, Müllerstraße 44, 6020 Innsbruck, Austria
| | - Juan D. Muñoz-Bolaños
- Institute for Biomedical Physics, Medical University of Innsbruck, Müllerstraße 44, 6020 Innsbruck, Austria
| | - Pouya Rajaeipour
- Phaseform GmbH, Georges-Köhler-Allee 102, 79110 Freiburg, Germany
| | | | - Çağlar Ataman
- Phaseform GmbH, Georges-Köhler-Allee 102, 79110 Freiburg, Germany
- Microsystems for Biomedical Imaging Laboratory, Department of Microsystems Engineering, University of Freiburg, Georges-Köhler-Allee 101, 79110 Freiburg, Germany
| | - Alexander Jesacher
- Institute for Biomedical Physics, Medical University of Innsbruck, Müllerstraße 44, 6020 Innsbruck, Austria
| |
Collapse
|
6
|
Zhang Q, Hu Q, Berlage C, Kner P, Judkewitz B, Booth M, Ji N. Adaptive optics for optical microscopy [Invited]. BIOMEDICAL OPTICS EXPRESS 2023; 14:1732-1756. [PMID: 37078027 PMCID: PMC10110298 DOI: 10.1364/boe.479886] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Revised: 03/06/2023] [Accepted: 03/06/2023] [Indexed: 05/03/2023]
Abstract
Optical microscopy is widely used to visualize fine structures. When applied to bioimaging, its performance is often degraded by sample-induced aberrations. In recent years, adaptive optics (AO), originally developed to correct for atmosphere-associated aberrations, has been applied to a wide range of microscopy modalities, enabling high- or super-resolution imaging of biological structure and function in complex tissues. Here, we review classic and recently developed AO techniques and their applications in optical microscopy.
Collapse
Affiliation(s)
- Qinrong Zhang
- Department of Physics, Department of Molecular & Cellular Biology, University of California, Berkeley, CA 94720, USA
| | - Qi Hu
- Department of Engineering Science, University of Oxford, Oxford OX1 3PJ, UK
| | - Caroline Berlage
- Charité - Universitätsmedizin Berlin, Einstein Center for Neurosciences, NeuroCure Cluster of Excellence, 10117 Berlin, Germany
- Humboldt-Universität zu Berlin, Institute for Biology, 10099 Berlin, Germany
| | - Peter Kner
- School of Electrical and Computer Engineering, University of Georgia, Athens, GA 30602, USA
| | - Benjamin Judkewitz
- Charité - Universitätsmedizin Berlin, Einstein Center for Neurosciences, NeuroCure Cluster of Excellence, 10117 Berlin, Germany
| | - Martin Booth
- Department of Engineering Science, University of Oxford, Oxford OX1 3PJ, UK
| | - Na Ji
- Department of Physics, Department of Molecular & Cellular Biology, University of California, Berkeley, CA 94720, USA
| |
Collapse
|
7
|
Akyol E, Hagag AM, Sivaprasad S, Lotery AJ. Adaptive optics: principles and applications in ophthalmology. Eye (Lond) 2021; 35:244-264. [PMID: 33257798 PMCID: PMC7852593 DOI: 10.1038/s41433-020-01286-z] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2020] [Revised: 10/19/2020] [Accepted: 11/04/2020] [Indexed: 12/26/2022] Open
Abstract
This is a comprehensive review of the principles and applications of adaptive optics (AO) in ophthalmology. It has been combined with flood illumination ophthalmoscopy, scanning laser ophthalmoscopy, as well as optical coherence tomography to image photoreceptors, retinal pigment epithelium (RPE), retinal ganglion cells, lamina cribrosa and the retinal vasculature. In this review, we highlight the clinical studies that have utilised AO to understand disease mechanisms. However, there are some limitations to using AO in a clinical setting including the cost of running an AO imaging service, the time needed to scan patients, the lack of normative databases and the very small size of area imaged. However, it is undoubtedly an exceptional research tool that enables visualisation of the retina at a cellular level.
Collapse
Affiliation(s)
- Engin Akyol
- Faculty of Medicine, University of Southampton, Southampton, SO17 1BJ, UK
| | - Ahmed M Hagag
- NIHR Moorfields Biomedical Research Centre, Moorfields Eye Hospital NHS Foundation Trust, London, EC1V 2PD, UK
- UCL Institute of Ophthalmology, London, EC1V 9EL, UK
| | - Sobha Sivaprasad
- NIHR Moorfields Biomedical Research Centre, Moorfields Eye Hospital NHS Foundation Trust, London, EC1V 2PD, UK
- UCL Institute of Ophthalmology, London, EC1V 9EL, UK
| | - Andrew J Lotery
- Faculty of Medicine, University of Southampton, Southampton, SO17 1BJ, UK.
| |
Collapse
|
8
|
Wang S, Larina IV, Larin KV. Label-free optical imaging in developmental biology [Invited]. BIOMEDICAL OPTICS EXPRESS 2020; 11:2017-2040. [PMID: 32341864 PMCID: PMC7173889 DOI: 10.1364/boe.381359] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Revised: 01/30/2020] [Accepted: 02/25/2020] [Indexed: 05/03/2023]
Abstract
Application of optical imaging in developmental biology marks an exciting frontier in biomedical optics. Optical resolution and imaging depth allow for investigation of growing embryos at subcellular, cellular, and whole organism levels, while the complexity and variety of embryonic processes set multiple challenges stimulating the development of various live dynamic embryonic imaging approaches. Among other optical methods, label-free optical techniques attract an increasing interest as they allow investigation of developmental mechanisms without application of exogenous markers or fluorescent reporters. There has been a boost in development of label-free optical imaging techniques for studying embryonic development in animal models over the last decade, which revealed new information about early development and created new areas for investigation. Here, we review the recent progress in label-free optical embryonic imaging, discuss specific applications, and comment on future developments at the interface of photonics, engineering, and developmental biology.
Collapse
Affiliation(s)
- Shang Wang
- Department of Biomedical Engineering, Stevens Institute of Technology, 1 Castle Point Terrace, Hoboken, NJ 07030, USA
| | - Irina V. Larina
- Department of Molecular Physiology and Biophysics, Baylor College of Medicine, 1 Baylor Plaza, Houston, TX 77030, USA
| | - Kirill V. Larin
- Department of Molecular Physiology and Biophysics, Baylor College of Medicine, 1 Baylor Plaza, Houston, TX 77030, USA
- Department of Biomedical Engineering, University of Houston, 3605 Cullen Boulevard, Houston, TX 77204, USA
| |
Collapse
|
9
|
Abstract
Embryonic development is highly complex and dynamic, requiring the coordination of numerous molecular and cellular events at precise times and places. Advances in imaging technology have made it possible to follow developmental processes at cellular, tissue, and organ levels over time as they take place in the intact embryo. Parallel innovations of in vivo probes permit imaging to report on molecular, physiological, and anatomical events of embryogenesis, but the resulting multidimensional data sets pose significant challenges for extracting knowledge. In this review, we discuss recent and emerging advances in imaging technologies, in vivo labeling, and data processing that offer the greatest potential for jointly deciphering the intricate cellular dynamics and the underlying molecular mechanisms. Our discussion of the emerging area of “image-omics” highlights both the challenges of data analysis and the promise of more fully embracing computation and data science for rapidly advancing our understanding of biology.
Collapse
Affiliation(s)
- Francesco Cutrale
- Department of Biomedical Engineering, University of Southern California, Los Angeles, California 90089, USA
- Translational Imaging Center, University of Southern California, Los Angeles, California 90089, USA
| | - Scott E. Fraser
- Department of Biomedical Engineering, University of Southern California, Los Angeles, California 90089, USA
- Translational Imaging Center, University of Southern California, Los Angeles, California 90089, USA
- Division of Molecular and Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, California 90089, USA
| | - Le A. Trinh
- Translational Imaging Center, University of Southern California, Los Angeles, California 90089, USA
- Division of Molecular and Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, California 90089, USA
| |
Collapse
|
10
|
Morgado Brajones J, Clouvel G, Dovillaire G, Levecq X, Lorenzo C. Highly Sensitive Shack-Hartmann Wavefront Sensor: Application to Non-Transparent Tissue Mimic Imaging with Adaptive Light-Sheet Fluorescence Microscopy. Methods Protoc 2019; 2:mps2030059. [PMID: 31336779 PMCID: PMC6789751 DOI: 10.3390/mps2030059] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2019] [Revised: 06/25/2019] [Accepted: 07/08/2019] [Indexed: 01/01/2023] Open
Abstract
High-quality in-depth imaging of three-dimensional samples remains a major challenge in modern microscopy. Selective plane illumination microscopy (SPIM) is a widely used technique that enables imaging of living tissues with subcellular resolution. However, scattering, absorption, and optical aberrations limit the depth at which useful imaging can be done. Adaptive optics (AOs) is a method capable of measuring and correcting aberrations in different kinds of fluorescence microscopes, thereby improving the performance of the optical system. We have incorporated a wavefront sensor adaptive optics scheme to SPIM (WAOSPIM) to correct aberrations induced by optically-thick samples, such as multi-cellular tumor spheroids (MCTS). Two-photon fluorescence provides us with a tool to produce a weak non-linear guide star (NGS) in any region of the field of view. The faintness of NGS; however, led us to develop a high-sensitivity Shack–Hartmann wavefront sensor (SHWS). This paper describes this newly developed SHWS and shows the correction capabilities of WAOSPIM using NGS in thick, inhomogeneous samples like MCTS. We report improvements of up to 79% for spatial frequencies corresponding to cellular and subcellular size features.
Collapse
|
11
|
Guan J, Liu X, Booth MJ. Investigation of structural mechanisms of laser-written waveguide formation through third-harmonic microscopy. OPTICS LETTERS 2019; 44:1039-1042. [PMID: 30768050 DOI: 10.1364/ol.44.001039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2018] [Accepted: 12/04/2018] [Indexed: 06/09/2023]
Abstract
The mechanisms of laser-induced modification of transparent materials are complex combinations of different processes that depend on the material itself and a range of processing parameters. As such, the mechanisms are still subject to ongoing study. We use a custom-built adaptive third-harmonic generation (THG) microscope to study those mechanisms. New femtosecond-laser-written phenomena are revealed through this method of imaging. This Letter, together with previous reports by Miyamoto Opt. Express24, 25718 (2016)OPEXFF1094-408710.1364/OE.24.025718 and Fernandez J. Phys. D48, 155101 (2015)JPAPBE0022-372710.1088/0022-3727/48/15/155101 suggest that the distribution of the generated plasma during writing is responsible for the newly revealed phenomena.
Collapse
|
12
|
Park K, Yang TD, Kim HJ, Kong T, Lee JM, Choi HS, Chun HJ, Kim BM, Choi Y. Inversion-free image recovery from strong aberration using a minimally sampled transmission matrix. Sci Rep 2019; 9:1206. [PMID: 30718906 PMCID: PMC6361891 DOI: 10.1038/s41598-018-38027-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2018] [Accepted: 12/19/2018] [Indexed: 11/30/2022] Open
Abstract
A transmission matrix (TM), a characteristic response for an input-output relation of an optical system, has been used for achieving diffraction-limited and aberration-free images through highly-aberrant imaging systems. However, its requirement of acquiring a huge-size TM along with its heavy computational load limit its widespread applications. Here we propose a method for TM-based image reconstruction, which is more efficient in terms of data manipulation and computational time. Only 10% of the TM elements for a fish-eye (FE) lens with strong aberration were sampled compared to that required for the image reconstruction by the conventional inversion method. The missing information was filled in by an iterative interpolation algorithm working in k-space. In addition, as a replacement of the time-consuming matrix inversion process, a phase pattern was created from the minimally sampled TM in order to compensate for the angle-dependent phase retardation caused by the FE lens. The focal distortion could be corrected by applying the phase correction pattern to the angular spectrums of the measured object images. The remaining spatial distortion could also be determined through the geometrical transformation also determined by the minimally sampled TM elements. Through the use of these procedures, the object image can be reconstructed 55 times faster than through the use of the usual inversion method using the full-sized TM, without compromising the reconstruction performances.
Collapse
Affiliation(s)
- Kwanjun Park
- Department of Bio-convergence Engineering, Korea University, Seoul, 02841, South Korea
| | - Taeseok Daniel Yang
- School of Biomedical Engineering, Korea University, Seoul, 02841, South Korea
| | - Hyung-Jin Kim
- Department of Bio-convergence Engineering, Korea University, Seoul, 02841, South Korea
| | - Taedong Kong
- Department of Bio-convergence Engineering, Korea University, Seoul, 02841, South Korea
| | - Jung Min Lee
- Department of Gastroenterology and Hepatology, Korea University, Seoul, 02841, South Korea
| | - Hyuk Soon Choi
- Department of Gastroenterology and Hepatology, Korea University, Seoul, 02841, South Korea
| | - Hoon Jai Chun
- Department of Gastroenterology and Hepatology, Korea University, Seoul, 02841, South Korea
| | - Beop-Min Kim
- Department of Bio-convergence Engineering, Korea University, Seoul, 02841, South Korea.,School of Biomedical Engineering, Korea University, Seoul, 02841, South Korea
| | - Youngwoon Choi
- Department of Bio-convergence Engineering, Korea University, Seoul, 02841, South Korea. .,School of Biomedical Engineering, Korea University, Seoul, 02841, South Korea.
| |
Collapse
|
13
|
Guan J, Liu X, Booth MJ. Ultrafast laser writing quill effect in low loss waveguide fabrication regime. OPTICS EXPRESS 2018; 26:30716-30723. [PMID: 30469964 DOI: 10.1364/oe.26.030716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Accepted: 10/22/2018] [Indexed: 06/09/2023]
Abstract
The quill effect is a laser writing phenomenon in which different fabrication effects occur, depending upon the direction of laser translation. It has not yet, to our knowledge, been studied in the low-loss-waveguide (LLW) writing regime, probably due to its very weak visibility under conventional transmission microscope in that regime. In this report, with the help of adaptive third harmonic generation microscopy, we reveal the quill effect in the LLW writing regime and show its influences on the properties of laser-written photonic integrated components, in terms of polarization-related properties in fused silica and beam-splitting ratios of three-waveguide-coupler in borosilicate glass.
Collapse
|
14
|
Gallagher J, Delon A, Moreau P, Wang I. Optimizing the metric in sensorless adaptive optical microscopy with fluorescence fluctuations. OPTICS EXPRESS 2017; 25:15558-15571. [PMID: 28788978 DOI: 10.1364/oe.25.015558] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Adaptive optics (AO) strategies using optimization-based, sensorless approaches are widely used, especially for microscopy applications. To converge rapidly to the best correction, such approaches require that a quality metric and a set of modes be chosen optimally. Fluorescence fluctuations microscopy, a family of methods that provides quantitative measurements of molecular concentration and mobility in living specimen, is in particular need of adaptive optics, since its results can be strongly biased by optical aberrations. We examined two possible metrics for sensorless AO, measured in a solution of fluorophores diffusing in 3D: the fluorescence count rate and the molecular brightness (or number of photons detected per molecule in the observation volume). We studied their respective measurement noise and sensitivity to aberrations. Then, AO correction accuracy was experimentally assessed by measuring the residual aberration after correcting a known wavefront. We proposed a theoretical framework to predict the correction accuracy, knowing the metric measurement noise and sensitivity. In the small aberration range, the brightness allows more accurate corrections when fluorophores are few but bright, whereas the count rate performs better in more concentrated solutions. When correcting large aberrations, the count rate is expected to be a more reliable metric.
Collapse
|
15
|
Adaptive optical fluorescence microscopy. Nat Methods 2017; 14:374-380. [DOI: 10.1038/nmeth.4218] [Citation(s) in RCA: 295] [Impact Index Per Article: 42.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2016] [Accepted: 02/06/2017] [Indexed: 12/24/2022]
|
16
|
Guan J, Liu X, Salter PS, Booth MJ. Hybrid laser written waveguides in fused silica for low loss and polarization independence. OPTICS EXPRESS 2017; 25:4845-4859. [PMID: 28380753 DOI: 10.1364/oe.25.004845] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Photonic integrated circuits (PICs) written with an ultrashort pulsed laser provide advantages in a range of applications, such as photon-based quantum information processing, where low insertion loss and low polarization dependence are critical concerns. Here we demonstrate the inscription of hybrid waveguides in fused silica at a pulse repetition rate of 1MHz that fulfill both these criteria. The mechanisms for propagation and coupling losses are identified and decoupled, with separate sections of the waveguide minimizing for each and an adiabatic mode conversion between the two. Moreover, differing sources of birefringence were revealed to be non-parallel for the waveguides, such that structures can be designed where these competing sources cancel to remove any polarization dependence.
Collapse
|
17
|
Swain JE. Novel Imaging Techniques to Assess Gametes and Preimplantation Embryos. Hum Reprod 2016. [DOI: 10.1002/9781118849613.ch6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Affiliation(s)
- Jason E. Swain
- Center for Reproductive Medicine, Department of Obstetrics & Gynecology; University of Michigan; Ann Arbor MI USA
| |
Collapse
|
18
|
MacLachlan DG, Harris RJ, Choudhury D, Simmonds RD, Salter PS, Booth MJ, Allington-Smith JR, Thomson RR. Development of integrated mode reformatting components for diffraction-limited spectroscopy. OPTICS LETTERS 2016; 41:76-9. [PMID: 26696162 DOI: 10.1364/ol.41.000076] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
We present the results of our work on developing fully integrated devices (photonic dicers) for reformatting multimode light to a diffraction limited pseudo-slit. These devices can be used to couple a seeing limited telescope point spread function to a spectrograph operating at the diffraction limit, thus potentially enabling compact, high-resolution spectrographs that are free of modal noise.
Collapse
|
19
|
SKORSETZ MARTIN, ARTAL PABLO, BUENO JUANM. Performance evaluation of a sensorless adaptive optics multiphoton microscope. J Microsc 2015; 261:249-58. [DOI: 10.1111/jmi.12325] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2014] [Accepted: 09/02/2015] [Indexed: 01/26/2023]
Affiliation(s)
- MARTIN SKORSETZ
- Laboratorio de Óptica, Instituto Universitario de Investigación en Óptica y Nanofísica; Universidad de Murcia; Murcia Spain
| | - PABLO ARTAL
- Laboratorio de Óptica, Instituto Universitario de Investigación en Óptica y Nanofísica; Universidad de Murcia; Murcia Spain
| | - JUAN M. BUENO
- Laboratorio de Óptica, Instituto Universitario de Investigación en Óptica y Nanofísica; Universidad de Murcia; Murcia Spain
| |
Collapse
|
20
|
Gavgiotaki E, Filippidis G, Kalognomou M, Tsouko AA, Skordos I, Fotakis C, Athanassakis I. Third Harmonic Generation microscopy as a reliable diagnostic tool for evaluating lipid body modification during cell activation: the example of BV-2 microglia cells. J Struct Biol 2014; 189:105-13. [PMID: 25486610 DOI: 10.1016/j.jsb.2014.11.011] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2014] [Revised: 11/22/2014] [Accepted: 11/30/2014] [Indexed: 10/24/2022]
Abstract
Nonlinear optical processes have found widespread applications in fields ranging from fundamental physics to biomedicine. In this study, we attempted to evaluate cell activation by using the Third Harmonic Generation (THG) imaging microscopy as a new diagnostic tool. The BV-2 microglia cell line with or without activation by lipopolysaccharide was chosen as a representative biological model. The results showed that THG imaging could discriminate between the control versus activated state of BV-2 cells not only as to THG signal intensity but also as to THG signal area, while verifying once more that the majority of the intracellular detected signal corresponds to lipid bodies. Since THG imaging is a real time, non-destructive modality and does not require any prior cell processing and staining, the results presented here provide an important tool for normal versus activated cell discrimination, which could be proved very useful in the study of inflammation.
Collapse
Affiliation(s)
- E Gavgiotaki
- Institute of Electronic Structure and Laser, Foundation for Research and Technology Hellas, 71110 Heraklion, Greece; Department of Physics, University of Crete, Greece
| | - G Filippidis
- Institute of Electronic Structure and Laser, Foundation for Research and Technology Hellas, 71110 Heraklion, Greece
| | - M Kalognomou
- Department of Biology, University of Crete, Heraklion 71409, Crete, Greece
| | - A A Tsouko
- Institute of Electronic Structure and Laser, Foundation for Research and Technology Hellas, 71110 Heraklion, Greece; Department of Physics, University of Crete, Greece
| | - I Skordos
- Department of Biology, University of Crete, Heraklion 71409, Crete, Greece
| | - C Fotakis
- Institute of Electronic Structure and Laser, Foundation for Research and Technology Hellas, 71110 Heraklion, Greece; Department of Physics, University of Crete, Greece
| | - I Athanassakis
- Department of Biology, University of Crete, Heraklion 71409, Crete, Greece.
| |
Collapse
|
21
|
Antonello J, van Werkhoven T, Verhaegen M, Truong HH, Keller CU, Gerritsen HC. Optimization-based wavefront sensorless adaptive optics for multiphoton microscopy. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2014; 31:1337-47. [PMID: 24977374 DOI: 10.1364/josaa.31.001337] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Optical aberrations have detrimental effects in multiphoton microscopy. These effects can be curtailed by implementing model-based wavefront sensorless adaptive optics, which only requires the addition of a wavefront shaping device, such as a deformable mirror (DM) to an existing microscope. The aberration correction is achieved by maximizing a suitable image quality metric. We implement a model-based aberration correction algorithm in a second-harmonic microscope. The tip, tilt, and defocus aberrations are removed from the basis functions used for the control of the DM, as these aberrations induce distortions in the acquired images. We compute the parameters of a quadratic polynomial that is used to model the image quality metric directly from experimental input-output measurements. Finally, we apply the aberration correction by maximizing the image quality metric using the least-squares estimate of the unknown aberration.
Collapse
|
22
|
Rahman SA, Booth MJ. Direct wavefront sensing in adaptive optical microscopy using backscattered light. APPLIED OPTICS 2013; 52:5523-32. [PMID: 23913074 DOI: 10.1364/ao.52.005523] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2013] [Accepted: 07/05/2013] [Indexed: 05/18/2023]
Abstract
Adaptive optics has been used to compensate the detrimental effects of aberrations in a range of high-resolution microscopes. We investigate how backscattered laser illumination can be used as the source for direct wavefront sensing using a pinhole-filtered Shack-Hartmann wavefront sensor. It is found that the sensor produces linear response to input aberrations for a given specimen. The gradient of this response is dependent upon experimental configuration and specimen structure. Cross sensitivity between modes is also observed. The double pass nature of the microscope system leads in general to lower sensitivity to odd-symmetry aberration modes. The results show that there is potential for use of this type of wavefront sensing in microscopes.
Collapse
Affiliation(s)
- Saad A Rahman
- Department of Engineering Science, University of Oxford, Oxford, UK
| | | |
Collapse
|
23
|
Kyvelidou C, Tserevelakis GJ, Filippidis G, Ranella A, Kleovoulou A, Fotakis C, Athanassakis I. Following the course of pre-implantation embryo patterning by non-linear microscopy. J Struct Biol 2011; 176:379-86. [DOI: 10.1016/j.jsb.2011.09.007] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2011] [Revised: 09/11/2011] [Accepted: 09/19/2011] [Indexed: 02/04/2023]
|
24
|
Advances in multiphoton microscopy for imaging embryos. Curr Opin Genet Dev 2011; 21:538-48. [PMID: 21917444 DOI: 10.1016/j.gde.2011.08.003] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2011] [Revised: 08/08/2011] [Accepted: 08/12/2011] [Indexed: 01/12/2023]
Abstract
Multiphoton imaging is a promising approach for addressing current issues in systems biology and high-content investigation of embryonic development. Recent advances in multiphoton microscopy, including light-sheet illumination, optimized laser scanning, adaptive and label-free strategies, open new opportunities for embryo imaging. However, the literature is often unclear about which microscopy technique is most adapted for achieving specific experimental goals. In this review, we describe and discuss the key concepts of imaging speed, imaging depth, photodamage, and nonlinear contrast mechanisms in the context of recent advances in live embryo imaging. We illustrate the potentials of these new imaging approaches with a selection of recent applications in developmental biology.
Collapse
|
25
|
Truong TV, Supatto W. Toward high-content/high-throughput imaging and analysis of embryonic morphogenesis. Genesis 2011; 49:555-69. [PMID: 21504047 DOI: 10.1002/dvg.20760] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2010] [Revised: 04/08/2011] [Accepted: 04/14/2011] [Indexed: 01/22/2023]
Abstract
In vivo study of embryonic morphogenesis tremendously benefits from recent advances in live microscopy and computational analyses. Quantitative and automated investigation of morphogenetic processes opens the field to high-content and high-throughput strategies. Following experimental workflow currently developed in cell biology, we identify the key challenges for applying such strategies in developmental biology. We review the recent progress in embryo preparation and manipulation, live imaging, data registration, image segmentation, feature computation, and data mining dedicated to the study of embryonic morphogenesis. We discuss a selection of pioneering studies that tackled the current methodological bottlenecks and illustrated the investigation of morphogenetic processes in vivo using quantitative and automated imaging and analysis of hundreds or thousands of cells simultaneously, paving the way for high-content/high-throughput strategies and systems analysis of embryonic morphogenesis.
Collapse
Affiliation(s)
- Thai V Truong
- California Institute of Technology, Division of Biology, Beckman Institute, Pasadena, California 91125, USA
| | | |
Collapse
|
26
|
Thayil A, Watanabe T, Jesacher A, Wilson T, Srinivas S, Booth M. Long-term imaging of mouse embryos using adaptive harmonic generation microscopy. JOURNAL OF BIOMEDICAL OPTICS 2011; 16:046018. [PMID: 21529087 PMCID: PMC3321263 DOI: 10.1117/1.3569614] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
We present a detailed description of an adaptive harmonic generation (HG) microscope and culture techniques that permit long-term, three-dimensional imaging of mouse embryos. HG signal from both pre- and postimplantation stage (0.5-5.5 day-old) mouse embryos are fully characterized. The second HG images reveal central spindles during cytokinesis whereas third HG images show several features, such as lipid droplets, nucleoli, and plasma membranes. The embryos are found to develop normally during one-day-long discontinuous HG imaging, permitting the observation of several dynamic events, such as morula compaction and blastocyst formation.
Collapse
Affiliation(s)
- Anisha Thayil
- Department of Engineering Science, University of Oxford, Parks Road, Oxford, Oxfordshire OX1 3PJ, United Kingdom
| | | | | | | | | | | |
Collapse
|
27
|
Marshall GD, Jesacher A, Thayil A, Withford MJ, Booth M. Three-dimensional imaging of direct-written photonic structures. OPTICS LETTERS 2011; 36:695-697. [PMID: 21368952 DOI: 10.1364/ol.36.000695] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Third-harmonic generation microscopy has been used to analyze the morphology of photonic structures created using the femtosecond laser direct-write technique. Three-dimensional waveguide arrays and waveguide-Bragg gratings written in fused-silica and doped phosphate glass were investigated. A sensorless adaptive-optical system was used to correct the optical aberrations occurring in the sample and microscope system, which had a lateral resolution of less than 500 nm. This nondestructive testing method creates volume reconstructions of photonic devices and reveals details invisible to other linear microscopy and index profilometry techniques.
Collapse
Affiliation(s)
- Graham D Marshall
- Centre for Ultrahigh bandwidth Devices for Optical Systems, Department of Physics and Astronomy, Macquarie University, NSW, Australia.
| | | | | | | | | |
Collapse
|
28
|
Fruhwirth GO, Fernandes LP, Weitsman G, Patel G, Kelleher M, Lawler K, Brock A, Poland SP, Matthews DR, Kéri G, Barber PR, Vojnovic B, Ameer‐Beg SM, Coolen ACC, Fraternali F, Ng T. How Förster Resonance Energy Transfer Imaging Improves the Understanding of Protein Interaction Networks in Cancer Biology. Chemphyschem 2011; 12:442-61. [DOI: 10.1002/cphc.201000866] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2010] [Revised: 01/07/2011] [Indexed: 01/22/2023]
Affiliation(s)
- Gilbert O. Fruhwirth
- Richard Dimbleby Department of Cancer Research, Division of Cancer Studies, King's College London, Guy's Medical School Campus, NHH, SE1 1UL (UK), Fax: (+44) (0) 20 7848 6220, Fax: (+44) (0) 20 7848 8056
- Comprehensive Cancer Imaging Centre, New Hunt's House, Guy's Medical School Campus, NHH, SE1 1UL (UK)
| | - Luis P. Fernandes
- Randall Division of Cell & Molecular Biophysics, King's College London, Guy's Medical School Campus, NHH, SE1 1UL (UK)
| | - Gregory Weitsman
- Richard Dimbleby Department of Cancer Research, Division of Cancer Studies, King's College London, Guy's Medical School Campus, NHH, SE1 1UL (UK), Fax: (+44) (0) 20 7848 6220, Fax: (+44) (0) 20 7848 8056
| | - Gargi Patel
- Richard Dimbleby Department of Cancer Research, Division of Cancer Studies, King's College London, Guy's Medical School Campus, NHH, SE1 1UL (UK), Fax: (+44) (0) 20 7848 6220, Fax: (+44) (0) 20 7848 8056
| | - Muireann Kelleher
- Richard Dimbleby Department of Cancer Research, Division of Cancer Studies, King's College London, Guy's Medical School Campus, NHH, SE1 1UL (UK), Fax: (+44) (0) 20 7848 6220, Fax: (+44) (0) 20 7848 8056
| | - Katherine Lawler
- Comprehensive Cancer Imaging Centre, New Hunt's House, Guy's Medical School Campus, NHH, SE1 1UL (UK)
| | - Adrian Brock
- Richard Dimbleby Department of Cancer Research, Division of Cancer Studies, King's College London, Guy's Medical School Campus, NHH, SE1 1UL (UK), Fax: (+44) (0) 20 7848 6220, Fax: (+44) (0) 20 7848 8056
| | - Simon P. Poland
- Comprehensive Cancer Imaging Centre, New Hunt's House, Guy's Medical School Campus, NHH, SE1 1UL (UK)
| | - Daniel R. Matthews
- Richard Dimbleby Department of Cancer Research, Division of Cancer Studies, King's College London, Guy's Medical School Campus, NHH, SE1 1UL (UK), Fax: (+44) (0) 20 7848 6220, Fax: (+44) (0) 20 7848 8056
| | - György Kéri
- Vichem Chemie Research Ltd. Herman Ottó utca 15, Budapest, Hungary and Pathobiochemistry Research Group of Hungarian Academy of Science, Semmelweis University, Budapest, 1444 Bp 8. POB 260 (Hungary)
| | - Paul R. Barber
- Gray Institute for Radiation Oncology & Biology, University of Oxford, Old Road Campus Research Building, Roosevelt Drive, Oxford, OX3 7DQ (UK)
| | - Borivoj Vojnovic
- Randall Division of Cell & Molecular Biophysics, King's College London, Guy's Medical School Campus, NHH, SE1 1UL (UK)
- Gray Institute for Radiation Oncology & Biology, University of Oxford, Old Road Campus Research Building, Roosevelt Drive, Oxford, OX3 7DQ (UK)
| | - Simon M. Ameer‐Beg
- Richard Dimbleby Department of Cancer Research, Division of Cancer Studies, King's College London, Guy's Medical School Campus, NHH, SE1 1UL (UK), Fax: (+44) (0) 20 7848 6220, Fax: (+44) (0) 20 7848 8056
- Randall Division of Cell & Molecular Biophysics, King's College London, Guy's Medical School Campus, NHH, SE1 1UL (UK)
| | - Anthony C. C. Coolen
- Randall Division of Cell & Molecular Biophysics, King's College London, Guy's Medical School Campus, NHH, SE1 1UL (UK)
- Department of Mathematics, King's College London, Strand Campus, London, WC2R 2LS (UK)
| | - Franca Fraternali
- Randall Division of Cell & Molecular Biophysics, King's College London, Guy's Medical School Campus, NHH, SE1 1UL (UK)
| | - Tony Ng
- Richard Dimbleby Department of Cancer Research, Division of Cancer Studies, King's College London, Guy's Medical School Campus, NHH, SE1 1UL (UK), Fax: (+44) (0) 20 7848 6220, Fax: (+44) (0) 20 7848 8056
- Randall Division of Cell & Molecular Biophysics, King's College London, Guy's Medical School Campus, NHH, SE1 1UL (UK)
- Comprehensive Cancer Imaging Centre, New Hunt's House, Guy's Medical School Campus, NHH, SE1 1UL (UK)
| |
Collapse
|
29
|
Cha JW, Ballesta J, So PTC. Shack-Hartmann wavefront-sensor-based adaptive optics system for multiphoton microscopy. JOURNAL OF BIOMEDICAL OPTICS 2010; 15:046022. [PMID: 20799824 PMCID: PMC2937046 DOI: 10.1117/1.3475954] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2010] [Revised: 06/12/2010] [Accepted: 06/23/2010] [Indexed: 05/18/2023]
Abstract
The imaging depth of two-photon excitation fluorescence microscopy is partly limited by the inhomogeneity of the refractive index in biological specimens. This inhomogeneity results in a distortion of the wavefront of the excitation light. This wavefront distortion results in image resolution degradation and lower signal level. Using an adaptive optics system consisting of a Shack-Hartmann wavefront sensor and a deformable mirror, wavefront distortion can be measured and corrected. With adaptive optics compensation, we demonstrate that the resolution and signal level can be better preserved at greater imaging depth in a variety of ex-vivo tissue specimens including mouse tongue muscle, heart muscle, and brain. However, for these highly scattering tissues, we find signal degradation due to scattering to be a more dominant factor than aberration.
Collapse
Affiliation(s)
- Jae Won Cha
- Massachusetts Institute of Technology, Department of Mechanical Engineering, Cambridge, Massachusetts 02139, USA
| | | | | |
Collapse
|
30
|
Aviles-Espinosa R, Santos SICO, Brodschelm A, Kaenders WG, Alonso-Ortega C, Artigas D, Loza-Alvarez P. Third-harmonic generation for the study of Caenorhabditis elegans embryogenesis. JOURNAL OF BIOMEDICAL OPTICS 2010; 15:046020. [PMID: 20799822 DOI: 10.1117/1.3477535] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Live microscopy techniques (i.e., differential interference contrast, confocal microscopy, etc.) have enabled the understanding of the mechanisms involved in cells and tissue formation. In long-term studies, special care must be taken in order to avoid sample damage, restricting the applicability of the different microscopy techniques. We demonstrate the potential of using third-harmonic generation (THG) microscopy for morphogenesis/embryogenesis studies in living Caenorhabditis elegans (C. elegans). Moreover, we show that the THG signal is obtained in all the embryo development stages, showing different tissue/structure information. For this research, we employ a 1550-nm femtosecond fiber laser and demonstrate that the expected water absorption at this wavelength does not severely compromise sample viability. Additionally, this has the important advantage that the THG signal is emitted at visible wavelengths (516 nm). Therefore, standard collection optics and detectors operating near maximum efficiency enable an optimal signal reconstruction. All this, to the best of our knowledge, demonstrates for the first time the noninvasiveness and strong potential of this particular wavelength to be used for high-resolution four-dimensional imaging of embryogenesis using unstained C. elegans in vivo samples.
Collapse
Affiliation(s)
- Rodrigo Aviles-Espinosa
- Institut de Ciencies Fotoniques, The Institute of Photonic Sciences, Mediterranean Technology Park, Barcelona, Spain
| | | | | | | | | | | | | |
Collapse
|
31
|
Watanabe T, Thayil A, Jesacher A, Grieve K, Debarre D, Wilson T, Booth M, Srinivas S. Characterisation of the dynamic behaviour of lipid droplets in the early mouse embryo using adaptive harmonic generation microscopy. BMC Cell Biol 2010; 11:38. [PMID: 20525231 PMCID: PMC3238212 DOI: 10.1186/1471-2121-11-38] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2010] [Accepted: 06/03/2010] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Lipid droplets (LD) are organelles with an important role in normal metabolism and disease. The lipid content of embryos has a major impact on viability and development. LD in Drosophila embryos and cultured cell lines have been shown to move and fuse in a microtubule dependent manner. Due to limitations in current imaging technology, little is known about the behaviour of LD in the mammalian embryo. Harmonic generation microscopy (HGM) allows one to image LD without the use of exogenous labels. Adaptive optics can be used to correct aberrations that would otherwise degrade the quality and information content of images. RESULTS We have built a harmonic generation microscope with adaptive optics to characterise early mouse embryogenesis. At fertilization, LD are small and uniformly distributed, but in the implanting blastocyst, LD are larger and enriched in the invading giant cells of the trophectoderm. Time-lapse studies reveal that LD move continuously and collide but do not fuse, instead forming aggregates that subsequently behave as single units. Using specific inhibitors, we show that the velocity and dynamic behaviour of LD is dependent not only on microtubules as in other systems, but also on microfilaments. We explore the limits within which HGM can be used to study living embryos without compromising viability and make the counterintuitive finding that 16 J of energy delivered continuously over a period of minutes can be less deleterious than an order of magnitude lower energy delivered dis-continuously over a period of hours. CONCLUSIONS LD in pre-implantation mouse embryos show a previously unappreciated complexity of behaviour that is dependent not only on microtubules, but also microfilaments. Unlike LD in other systems, LD in the mouse embryo do not fuse but form aggregates. This study establishes HGM with adaptive optics as a powerful tool for the study of LD biology and provides insights into the photo-toxic effects of imaging embryos.
Collapse
Affiliation(s)
- Tomoko Watanabe
- Department of Physiology Anatomy and Genetics, University of Oxford, Oxford OX1 3QX, UK
| | - Anisha Thayil
- Department of Engineering Science, University of Oxford, Oxford, OX1 3PJ, UK
| | - Alexander Jesacher
- Department of Engineering Science, University of Oxford, Oxford, OX1 3PJ, UK
| | - Kate Grieve
- Department of Engineering Science, University of Oxford, Oxford, OX1 3PJ, UK
| | - Delphine Debarre
- Department of Engineering Science, University of Oxford, Oxford, OX1 3PJ, UK
| | - Tony Wilson
- Department of Engineering Science, University of Oxford, Oxford, OX1 3PJ, UK
| | - Martin Booth
- Department of Engineering Science, University of Oxford, Oxford, OX1 3PJ, UK
| | - Shankar Srinivas
- Department of Physiology Anatomy and Genetics, University of Oxford, Oxford OX1 3QX, UK
| |
Collapse
|