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For: Li J, Jew B, Zhan L, Hwang S, Coppola G, Freimer NB, Sul JH. ForestQC: Quality control on genetic variants from next-generation sequencing data using random forest. PLoS Comput Biol 2019;15:e1007556. [PMID: 31851693 PMCID: PMC6938691 DOI: 10.1371/journal.pcbi.1007556] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2019] [Revised: 01/01/2020] [Accepted: 11/21/2019] [Indexed: 12/30/2022]  Open
Number Cited by Other Article(s)
1
Perschinka F, Peer A, Joannidis M. [Artificial intelligence and acute kidney injury]. Med Klin Intensivmed Notfmed 2024;119:199-207. [PMID: 38396124 PMCID: PMC10995052 DOI: 10.1007/s00063-024-01111-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 01/17/2024] [Indexed: 02/25/2024]
2
Mehmetbeyoglu E, Duman A, Taheri S, Ozkul Y, Rassoulzadegan M. From Data to Insights: Machine Learning Empowers Prognostic Biomarker Prediction in Autism. J Pers Med 2023;13:1713. [PMID: 38138941 PMCID: PMC10744627 DOI: 10.3390/jpm13121713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Revised: 12/10/2023] [Accepted: 12/12/2023] [Indexed: 12/24/2023]  Open
3
Kolb KL, Mira ALS, Auer ED, Bucco ID, de Lima e Silva CE, dos Santos PI, Hoch VBB, Oliveira LC, Hauser AB, Hundt JE, Shuldiner AR, Lopes FL, Boysen TJ, Franke A, Pinto LFR, Soares-Lima SC, Kretzschmar GC, Boldt ABW. Glucocorticoid Receptor Gene (NR3C1) Polymorphisms and Metabolic Syndrome: Insights from the Mennonite Population. Genes (Basel) 2023;14:1805. [PMID: 37761945 PMCID: PMC10530687 DOI: 10.3390/genes14091805] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2023] [Revised: 09/06/2023] [Accepted: 09/12/2023] [Indexed: 09/29/2023]  Open
4
Barbosa CFC, Asunto JC, Koh RBL, Santos DMC, Zhang D, Cao EP, Galvez LC. Genome-Wide SNP and Indel Discovery in Abaca (Musa textilis Née) and among Other Musa spp. for Abaca Genetic Resources Management. Curr Issues Mol Biol 2023;45:5776-5797. [PMID: 37504281 PMCID: PMC10377871 DOI: 10.3390/cimb45070365] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 07/05/2023] [Accepted: 07/07/2023] [Indexed: 07/29/2023]  Open
5
Atkinson EG, Artomov M, Loboda AA, Rehm HL, MacArthur DG, Karczewski KJ, Neale BM, Daly MJ. Discordant calls across genotype discovery approaches elucidate variants with systematic errors. Genome Res 2023;33:999-1005. [PMID: 37253541 PMCID: PMC10519400 DOI: 10.1101/gr.277908.123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Accepted: 05/19/2023] [Indexed: 06/01/2023]
6
Vaisband M, Schubert M, Gassner FJ, Geisberger R, Greil R, Zaborsky N, Hasenauer J. Validation of genetic variants from NGS data using deep convolutional neural networks. BMC Bioinformatics 2023;24:158. [PMID: 37081386 PMCID: PMC10116675 DOI: 10.1186/s12859-023-05255-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Accepted: 03/27/2023] [Indexed: 04/22/2023]  Open
7
FVC as an adaptive and accurate method for filtering variants from popular NGS analysis pipelines. Commun Biol 2022;5:975. [PMID: 36114280 PMCID: PMC9481582 DOI: 10.1038/s42003-022-03397-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Accepted: 04/22/2022] [Indexed: 11/08/2022]  Open
8
Fernández-Orth D, Rueda M, Singh B, Moldes M, Jene A, Ferri M, Vasallo C, Fromont LA, Navarro A, Rambla J. A quality control portal for sequencing data deposited at the European genome-phenome archive. Brief Bioinform 2022;23:6570012. [PMID: 35438138 PMCID: PMC9116225 DOI: 10.1093/bib/bbac136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Revised: 03/01/2022] [Accepted: 03/23/2022] [Indexed: 11/15/2022]  Open
9
Artificial Intelligence and Cardiovascular Genetics. Life (Basel) 2022;12:life12020279. [PMID: 35207566 PMCID: PMC8875522 DOI: 10.3390/life12020279] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Revised: 01/26/2022] [Accepted: 02/09/2022] [Indexed: 12/13/2022]  Open
10
Musolf AM, Holzinger ER, Malley JD, Bailey-Wilson JE. What makes a good prediction? Feature importance and beginning to open the black box of machine learning in genetics. Hum Genet 2021;141:1515-1528. [PMID: 34862561 PMCID: PMC9360120 DOI: 10.1007/s00439-021-02402-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Accepted: 11/08/2021] [Indexed: 01/26/2023]
11
Machine learning random forest for predicting oncosomatic variant NGS analysis. Sci Rep 2021;11:21820. [PMID: 34750410 PMCID: PMC8575902 DOI: 10.1038/s41598-021-01253-y] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Accepted: 10/21/2021] [Indexed: 12/02/2022]  Open
12
Survey of artificial intelligence approaches in the study of anthropogenic impacts on symbiotic organisms – a holistic view. Symbiosis 2021. [DOI: 10.1007/s13199-021-00778-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
13
Suehiro Y, Yoshina S, Motohashi T, Iwata S, Dejima K, Mitani S. Efficient collection of a large number of mutations by mutagenesis of DNA damage response defective animals. Sci Rep 2021;11:7630. [PMID: 33828169 PMCID: PMC8027614 DOI: 10.1038/s41598-021-87226-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Accepted: 03/24/2021] [Indexed: 02/01/2023]  Open
14
Albrecht S, Sprang M, Andrade-Navarro MA, Fontaine JF. seqQscorer: automated quality control of next-generation sequencing data using machine learning. Genome Biol 2021;22:75. [PMID: 33673854 PMCID: PMC7934511 DOI: 10.1186/s13059-021-02294-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Accepted: 02/10/2021] [Indexed: 01/03/2023]  Open
15
Veeramachaneni V. Data Analysis in Rare Disease Diagnostics. J Indian Inst Sci 2020. [DOI: 10.1007/s41745-020-00189-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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